Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5230303
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 140504 characters in sequence are not A, C, G, or T
File 6 of 29
Found at i:805341 original size:10 final size:10
Alignment explanation
Indices: 805326--805687 Score: 91
Period size: 10 Copynumber: 37.2 Consensus size: 10
805316 TTTTAAATTT
*
805326 AAAATTTTAA
1 AAAATTATAA
805336 AAAATTAT-A
1 AAAATTATAA
*
805345 AAACTTA-AA
1 AAAATTATAA
805354 ATAAA-TAT--
1 A-AAATTATAA
*
805362 AAAATTCA-AT
1 AAAATT-ATAA
805372 AAAATTATAA
1 AAAATTATAA
*
805382 AAAACTA-ATA
1 AAAATTATA-A
805392 AAAATTAT-A
1 AAAATTATAA
805401 AAAA-TATAA
1 AAAATTATAA
805410 AAAATTATAA
1 AAAATTATAA
*
805420 AAGAATTAAAA
1 AA-AATTATAA
**
805431 AAAAAAATAA
1 AAAATTATAA
*
805441 AAAA-T-TCA
1 AAAATTATAA
* *
805449 GAACTTA-AA
1 AAAATTATAA
805458 AAAATTAT-A
1 AAAATTATAA
*
805467 AGAATCTAT-A
1 AAAAT-TATAA
**
805477 AATTTTAT-A
1 AAAATTATAA
*
805486 AAAATTAT-G
1 AAAATTATAA
* *
805495 AACATTATACT
1 AAAATTATA-A
805506 AAAATTATAAA
1 AAAATTAT-AA
805517 AAAATCTATAAAA
1 AAAAT-TAT--AA
*
805530 TTAAAATTTTCAA
1 --AAAATTAT-AA
*
805543 AAAATT-CAA
1 AAAATTATAA
805552 AAAATTATAA
1 AAAATTATAA
*
805562 CAAATCTAT--
1 AAAAT-TATAA
805571 AAAATTCA-AA
1 AAAATT-ATAA
805581 AAAA-TATAAA
1 AAAATTAT-AA
** *
805591 AATCAAAAATCA
1 AA--AATTATAA
805603 AAAATTATAA
1 AAAATTATAA
*
805613 TAAATCTAT-A
1 AAAAT-TATAA
805623 AAAA-T-T-A
1 AAAATTATAA
*
805630 AAAATTGTAA
1 AAAATTATAA
805640 AAAA-TAT--
1 AAAATTATAA
*
805647 AAAATT-TAC
1 AAAATTATAA
*
805656 AAAATTACAA
1 AAAATTATAA
805666 AAACA-TATAA
1 AAA-ATTATAA
*
805676 AAAAGTATAA
1 AAAATTATAA
805686 AA
1 AA
805688 TTCAAAAAAC
Statistics
Matches: 263, Mismatches: 45, Indels: 88
0.66 0.11 0.22
Matches are distributed among these distances:
7 14 0.05
8 14 0.05
9 77 0.29
10 101 0.38
11 34 0.13
12 9 0.03
13 7 0.03
14 2 0.01
15 5 0.02
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.28
Consensus pattern (10 bp):
AAAATTATAA
Found at i:805347 original size:9 final size:9
Alignment explanation
Indices: 805335--805678 Score: 117
Period size: 9 Copynumber: 38.6 Consensus size: 9
805325 TAAAATTTTA
805335 AAAAATTAT
1 AAAAATTAT
*
805344 AAAACTTA-
1 AAAAATTAT
*
805352 AAATAAATAT
1 AAA-AATTAT
805362 -AAAATTCA-
1 AAAAATT-AT
805370 ATAAAATTAT
1 A-AAAATTAT
*
805380 AAAAAACTAAT
1 -AAAAA-TTAT
805391 AAAAATTAT
1 AAAAATTAT
805400 AAAAA-TAT
1 AAAAATTAT
805408 AAAAAATTAT
1 -AAAAATTAT
*
805418 AAAAGAAT-T
1 AAAA-ATTAT
805427 AAAAA--A-
1 AAAAATTAT
805433 AAAAA-TA-
1 AAAAATTAT
*
805440 AAAAATT-C
1 AAAAATTAT
* * *
805448 AGAACTTAA
1 AAAAATTAT
805457 AAAAATTAT
1 AAAAATTAT
*
805466 AAGAATCTAT
1 AAAAAT-TAT
**
805476 AAATTTTAT
1 AAAAATTAT
805485 AAAAATTAT
1 AAAAATTAT
* *
805494 GAACATTAT
1 AAAAATTAT
805503 ACTAAAATTAT
1 A--AAAATTAT
805514 AAAAAAATCTAT
1 --AAAAAT-TAT
805526 -AAAATTA-
1 AAAAATTAT
**
805533 AAATTTTCA-
1 AAAAATT-AT
805542 AAAAATTCA-
1 AAAAATT-AT
805551 AAAAATTAT
1 AAAAATTAT
805560 AACAAATCTAT
1 AA-AAAT-TAT
805571 -AAAATTCA-
1 AAAAATT-AT
*
805579 AAAAAATAT
1 AAAAATTAT
*
805588 AAAAA-T-C
1 AAAAATTAT
*
805595 AAAAA-T-C
1 AAAAATTAT
805602 AAAAATTAT
1 AAAAATTAT
805611 AATAAATCTAT
1 AA-AAAT-TAT
805622 AAAAA-T-T
1 AAAAATTAT
*
805629 AAAAATTGT
1 AAAAATTAT
*
805638 AAAAAATAT
1 AAAAATTAT
805647 -AAAATT-T
1 AAAAATTAT
*
805654 ACAAAATTAC
1 A-AAAATTAT
*
805664 AAAAACATAT
1 AAAAA-TTAT
805674 AAAAA
1 AAAAA
805679 AGTATAAAAT
Statistics
Matches: 259, Mismatches: 36, Indels: 79
0.69 0.10 0.21
Matches are distributed among these distances:
6 5 0.02
7 25 0.10
8 34 0.13
9 121 0.47
10 46 0.18
11 24 0.09
12 3 0.01
13 1 0.00
ACGTcount: A:0.65, C:0.06, G:0.01, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:805359 original size:36 final size:35
Alignment explanation
Indices: 805319--805421 Score: 102
Period size: 36 Copynumber: 2.8 Consensus size: 35
805309 AATTATTTTT
805319 TAAATTTAAAATTTTAAAAAATTATAAAACTTAA-AA
1 TAAATTTAAAA-TTTAAAAAATTATAAAAC-TAATAA
* *
805355 TAAATATAAAATTCAATAAAATTATAAAAAACTAATAA
1 TAAATTTAAAATTTAA-AAAATTAT--AAAACTAATAA
*
805393 -AAATTATAAAAATATAAAAAATTATAAAA
1 TAAATT-T-AAAATTTAAAAAATTATAAAA
805422 GAATTAAAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
35 4 0.07
36 22 0.39
37 7 0.12
38 16 0.29
39 7 0.12
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (35 bp):
TAAATTTAAAATTTAAAAAATTATAAAACTAATAA
Found at i:805364 original size:28 final size:26
Alignment explanation
Indices: 805333--805432 Score: 71
Period size: 28 Copynumber: 3.6 Consensus size: 26
805323 TTTAAAATTT
805333 TAAAAAATTATAAAACTTAAAATAAATA
1 TAAAAAATTATAAAA-TTAAAA-AAATA
805361 T--AAAATTCAATAAAATTATAAAAAACTA
1 TAAAAAATT--ATAAAATTA-AAAAAA-TA
*
805389 -ATAAAAATTATAAAAATATAAAAAATTA
1 TA-AAAAATTAT-AAAAT-TAAAAAAATA
*
805417 TAAAAGAATTAAAAAA
1 TAAAA-AATTATAAAA
805433 AAAAATAAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 22
0.71 0.02 0.27
Matches are distributed among these distances:
26 6 0.10
27 6 0.10
28 23 0.39
29 16 0.27
30 8 0.14
ACGTcount: A:0.69, C:0.03, G:0.01, T:0.27
Consensus pattern (26 bp):
TAAAAAATTATAAAATTAAAAAAATA
Found at i:805375 original size:38 final size:36
Alignment explanation
Indices: 805333--805421 Score: 96
Period size: 38 Copynumber: 2.4 Consensus size: 36
805323 TTTAAAATTT
805333 TAAAAAATTATAAAACTTAA-AATAAA-TAT-AAAAT-
1 TAAAAAATTATAAAAC-TAATAA-AAATTATAAAAATA
805367 TCAATAAAATTATAAAAAACTAATAAAAATTATAAAAATA
1 T-AA-AAAATTAT--AAAACTAATAAAAATTATAAAAATA
805407 TAAAAAATTATAAAA
1 TAAAAAATTATAAAA
805422 GAATTAAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
34 1 0.02
35 2 0.04
36 12 0.26
37 6 0.13
38 18 0.38
39 7 0.15
40 1 0.02
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (36 bp):
TAAAAAATTATAAAACTAATAAAAATTATAAAAATA
Found at i:805634 original size:17 final size:17
Alignment explanation
Indices: 805563--805678 Score: 64
Period size: 17 Copynumber: 6.8 Consensus size: 17
805553 AAATTATAAC
805563 AAATCTAT-AAAATTCAA
1 AAATCTATAAAAATT-AA
** *
805580 AAAAATATAAAAATCAA
1 AAATCTATAAAAATTAA
*
805597 AAATC-A-AAAATTATAA
1 AAATCTATAAAAAT-TAA
805613 TAAATCTATAAAAATTAA
1 -AAATCTATAAAAATTAA
* *
805631 AAAT-TGTAAAAAATATA
1 AAATCTATAAAAATTA-A
805648 AAAT-T-TACAAAATTACA
1 AAATCTATA-AAAATTA-A
*
805665 AAAACATATAAAAA
1 AAATC-TATAAAAA
805679 AGTATAAAAT
Statistics
Matches: 76, Mismatches: 13, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
15 5 0.07
16 14 0.18
17 36 0.47
18 9 0.12
19 10 0.13
20 2 0.03
ACGTcount: A:0.66, C:0.07, G:0.01, T:0.26
Consensus pattern (17 bp):
AAATCTATAAAAATTAA
Found at i:805704 original size:36 final size:36
Alignment explanation
Indices: 805637--805710 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 36
805627 TTAAAAATTG
* ** *
805637 TAAAAAATATAAAATTTACAAAATTACAAAAACATA
1 TAAAAAATATAAAATTCACAAAAACAAAAAAACATA
*
805673 TAAAAAAGTATAAAATTCA-AAAAACAAAAAAATATA
1 TAAAAAA-TATAAAATTCACAAAAACAAAAAAACATA
805709 TA
1 TA
805711 TCTTTGTTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
36 22 0.69
37 10 0.31
ACGTcount: A:0.69, C:0.07, G:0.01, T:0.23
Consensus pattern (36 bp):
TAAAAAATATAAAATTCACAAAAACAAAAAAACATA
Found at i:805763 original size:25 final size:26
Alignment explanation
Indices: 805734--805822 Score: 76
Period size: 25 Copynumber: 3.4 Consensus size: 26
805724 TTTTTTTCTT
**
805734 TTTTTAATTTTAT-ATTATTTTCTAAA
1 TTTTTAATTTTATAATT-TTTTAAAAA
*
805760 -TTTTGATTTT-TAATTTTTTAAAAA
1 TTTTTAATTTTATAATTTTTTAAAAA
* *
805784 TTTTTAATTTTATTGATTTTTTATAATA
1 TTTTTAATTTTA-TAATTTTTTA-AAAA
805812 TTTTGTAATTT
1 TTTT-TAATTT
805823 CTCAAAATTT
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
24 8 0.16
25 21 0.41
27 9 0.18
28 7 0.14
29 6 0.12
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.66
Consensus pattern (26 bp):
TTTTTAATTTTATAATTTTTTAAAAA
Found at i:805853 original size:11 final size:11
Alignment explanation
Indices: 805828--805877 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
805818 AATTTCTCAA
*
805828 AATTTATTT-T
1 AATTTTTTTAT
805838 AATTTTTTTAT
1 AATTTTTTTAT
* *
805849 AA-TTTTATAG
1 AATTTTTTTAT
*
805859 ATTTTTTTTAT
1 AATTTTTTTAT
805870 AATTTTTT
1 AATTTTTT
805878 GGAATTTATA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
10 15 0.48
11 16 0.52
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (11 bp):
AATTTTTTTAT
Found at i:805854 original size:8 final size:8
Alignment explanation
Indices: 805843--806131 Score: 52
Period size: 8 Copynumber: 34.5 Consensus size: 8
805833 ATTTTAATTT
805843 TTTTATAA
1 TTTTATAA
805851 TTTTATAGA
1 TTTTATA-A
805860 -TTT-T--
1 TTTTATAA
805864 TTTTATAA
1 TTTTATAA
*
805872 TTTTTTGGAA
1 TTTTAT--AA
805882 -TTTAT-A
1 TTTTATAA
805888 TTGTTATAAA
1 TT-TTAT-AA
*
805898 TTTTTTAA
1 TTTTATAA
805906 TTTTATAGA
1 TTTTATA-A
*
805915 TTTT-TCA
1 TTTTATAA
*
805922 TTTTATTGTA
1 TTTTA-T-AA
**
805932 TTTT-TTG
1 TTTTATAA
*
805939 TATT-TAA
1 TTTTATAA
805946 TTTT--AA
1 TTTTATAA
805952 TTTTATAA
1 TTTTATAA
*
805960 TTTTTTATA
1 TTTTATA-A
*
805969 TTTTTTGAA
1 TTTTAT-AA
*
805978 TTTTAAATAT
1 TTTT--ATAA
*
805988 TTTTAAATAT
1 TTTT--ATAA
805998 TTTTATAA
1 TTTTATAA
806006 TTTT-TGAA
1 TTTTAT-AA
806014 TTTT-T-A
1 TTTTATAA
806020 TTTT-TAGA
1 TTTTATA-A
*
806028 TTTCATAA
1 TTTTATAA
*
806036 TTTTTTTGAA
1 -TTTTAT-AA
*
806046 TTTCATATAT
1 TTT--TATAA
*
806056 TTTTATAT
1 TTTTATAA
806064 TTTTA-AA
1 TTTTATAA
*
806071 CTTATTTTTAA
1 --T-TTTATAA
806082 TTTTATATAA
1 -TTT-TATAA
*
806092 TTATTTTAA
1 TT-TTATAA
806101 TTTTATAA
1 TTTTATAA
806109 TTTTAAATAA
1 TTTT--ATAA
806119 TTTGTATAA
1 TTT-TATAA
806128 TTTT
1 TTTT
806132 TTATATTTTT
Statistics
Matches: 218, Mismatches: 25, Indels: 76
0.68 0.08 0.24
Matches are distributed among these distances:
5 3 0.01
6 14 0.06
7 17 0.08
8 76 0.35
9 53 0.24
10 49 0.22
11 6 0.03
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.64
Consensus pattern (8 bp):
TTTTATAA
Found at i:805854 original size:10 final size:10
Alignment explanation
Indices: 805766--806141 Score: 56
Period size: 10 Copynumber: 40.3 Consensus size: 10
805756 TAAATTTTGA
805766 TTTT-TAATT
1 TTTTATAATT
**
805775 TTTTA-AAAA
1 TTTTATAATT
805784 TTTT-TAATT
1 TTTTATAATT
* *
805793 TTAT-TGATT
1 TTTTATAATT
*
805802 TTTTATAATA
1 TTTTATAATT
*
805812 TTTTGTAATT
1 TTTTATAATT
* * *
805822 TCTCAAAATT
1 TTTTATAATT
805832 TATTT-TAATTT
1 T-TTTATAA-TT
805843 TTTTATAATT
1 TTTTATAATT
* * *
805853 TTATAGATTTT
1 TTTTATA-ATT
805864 TTTTATAATT
1 TTTTATAATT
**
805874 TTTTGGAA--
1 TTTTATAATT
805882 -TTTAT-A-T
1 TTTTATAATT
* *
805889 TGTTATAAAT
1 TTTTATAATT
805899 TTTT-TAA--
1 TTTTATAATT
805906 TTTTATAGATT
1 TTTTATA-ATT
*
805917 TTTCAT--TT
1 TTTTATAATT
* *
805925 TATTGT-ATT
1 TTTTATAATT
*
805934 TTTTGT-ATT
1 TTTTATAATT
805943 TAATTT-TAA-T
1 T--TTTATAATT
805953 T-TTATAATT
1 TTTTATAATT
805962 TTTTAT-ATT
1 TTTTATAATT
*
805971 TTTT-GAA--
1 TTTTATAATT
805978 TTTTA-AATAT
1 TTTTATAAT-T
805988 TTTTA-AATAT
1 TTTTATAAT-T
805998 TTTTATAATT
1 TTTTATAATT
* *
806008 TTTGA-ATTT
1 TTTTATAATT
* * **
806017 TTATTTTTAGA
1 TT-TTATAATT
*
806028 TTTCATAATT
1 TTTTATAATT
806038 TTTT-TGAATT
1 TTTTAT-AATT
**
806048 TCATAT-A-T
1 TTTTATAATT
806056 TTTTAT-A-T
1 TTTTATAATT
806064 TTTTA-AACTT
1 TTTTATAA-TT
806074 ATTTT-TAATT
1 -TTTTATAATT
*
806084 TTATATAATT
1 TTTTATAATT
*
806094 ATTT-TAA--
1 TTTTATAATT
806101 TTTTATAATT
1 TTTTATAATT
**
806111 TTAAATAA-T
1 TTTTATAATT
*
806120 TTGTATAATT
1 TTTTATAATT
806130 TTTTAT-ATT
1 TTTTATAATT
806139 TTT
1 TTT
806142 ATTTGTATTT
Statistics
Matches: 262, Mismatches: 63, Indels: 84
0.64 0.15 0.21
Matches are distributed among these distances:
6 1 0.00
7 18 0.07
8 30 0.11
9 74 0.28
10 104 0.40
11 35 0.13
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (10 bp):
TTTTATAATT
Found at i:805918 original size:16 final size:15
Alignment explanation
Indices: 805899--806132 Score: 68
Period size: 17 Copynumber: 14.3 Consensus size: 15
805889 TGTTATAAAT
805899 TTTTTAATTTTATAGA
1 TTTTTAATTTTATA-A
* *
805915 TTTTTCATTTTATTGTA
1 TTTTTAATTTTA-T-AA
** *
805932 TTTTTTGTATT-TAA
1 TTTTTAATTTTATAA
805946 -TTTTAATTTTATAA
1 TTTTTAATTTTATAA
*
805960 TTTTTTATATTTTTTGAA
1 -TTTTTA-ATTTTAT-AA
* *
805978 TTTTAAATATTTTTAA
1 TTTTTAAT-TTTATAA
* *
805994 ---ATATTTTTATAA
1 TTTTTAATTTTATAA
806006 TTTTTGAATTTT-T-A
1 TTTTT-AATTTTATAA
*
806020 TTTTTAGATTTCATAA
1 TTTTTA-ATTTTATAA
*
806036 TTTTTTTGAATTTCATATA
1 --TTTTT-AATTTTATA-A
*
806055 TTTTTATATTTTTAAACTTA
1 TTTTTA-A-TTTT--A-TAA
806075 TTTTTAATTTTATATAA
1 TTTTTAA-TTT-TATAA
806092 TTATTTTAATTTTATAA
1 -T-TTTTAATTTTATAA
806109 TTTTAAATAATTTGTATAA
1 TTTT---TAATTT-TATAA
806128 TTTTT
1 TTTTT
806133 TATATTTTTA
Statistics
Matches: 166, Mismatches: 21, Indels: 62
0.67 0.08 0.25
Matches are distributed among these distances:
12 6 0.04
13 10 0.06
14 14 0.08
15 7 0.04
16 29 0.17
17 39 0.23
18 29 0.17
19 22 0.13
20 9 0.05
21 1 0.01
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (15 bp):
TTTTTAATTTTATAA
Found at i:805962 original size:28 final size:25
Alignment explanation
Indices: 805931--806018 Score: 70
Period size: 28 Copynumber: 3.2 Consensus size: 25
805921 ATTTTATTGT
* *
805931 ATTTTTTGTATTTAATTTTAATTTTATA
1 ATTTTTTATATTT--TTTGAATTTTA-A
805959 ATTTTTTATATTTTTTGAATTTTAA
1 ATTTTTTATATTTTTTGAATTTTAA
*
805984 ATATTTTTAAATATTTTTAT-AATTTTTGA
1 AT-TTTTT--ATATTTTT-TGAA-TTTTAA
806013 ATTTTT
1 ATTTTT
806019 ATTTTTAGAT
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
25 3 0.06
26 15 0.29
28 26 0.50
29 8 0.15
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (25 bp):
ATTTTTTATATTTTTTGAATTTTAA
Found at i:805973 original size:18 final size:18
Alignment explanation
Indices: 805952--806143 Score: 89
Period size: 18 Copynumber: 10.3 Consensus size: 18
805942 TTAATTTTAA
805952 TTTTATAATTTTTTATAT
1 TTTTATAATTTTTTATAT
**
805970 TTTT-TGAATTTTAAATAT
1 TTTTAT-AATTTTTTATAT
805988 TTTTA-AATATTTTTATAAT
1 TTTTATAAT-TTTTTAT-AT
* *
806007 TTTT-GAA-TTTTTATTTT
1 TTTTATAATTTTTTA-TAT
*
806024 TAGATTTCATAATTTTTT-TGAA
1 T---TTT-ATAATTTTTTAT-AT
*
806046 TTTCAT-ATATTTTTATAT
1 TTTTATAAT-TTTTTATAT
806064 TTTTA-AACTTATTTT-TAAT
1 TTTTATAA-TT-TTTTAT-AT
806083 TTTATATAATTATTTTA-A-
1 TTT-TATAATT-TTTTATAT
**
806101 TTTTATAATTTTAAATAAT
1 TTTTATAATTTTTTAT-AT
*
806120 TTGTATAATTTTTTATAT
1 TTTTATAATTTTTTATAT
806138 TTTTAT
1 TTTTAT
806144 TTGTATTTTT
Statistics
Matches: 132, Mismatches: 17, Indels: 50
0.66 0.09 0.25
Matches are distributed among these distances:
16 3 0.02
17 21 0.16
18 50 0.38
19 35 0.27
20 12 0.09
21 3 0.02
22 3 0.02
23 5 0.04
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.65
Consensus pattern (18 bp):
TTTTATAATTTTTTATAT
Found at i:805989 original size:46 final size:46
Alignment explanation
Indices: 805900--805989 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
805890 GTTATAAATT
* ***
805900 TTTTAATTTTATAGATTTTTCATTTTATTGTATTTTTTGTATTTAA
1 TTTTAATTTTATAGATTTTTCATTTTATTGAATTTTAAATATTTAA
* *
805946 TTTTAATTTTATA-ATTTTTTATATTTTTTGAATTTTAAATATTT
1 TTTTAATTTTATAGATTTTTCAT-TTTATTGAATTTTAAATATTT
805990 TTAAATATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
45 8 0.22
46 29 0.78
ACGTcount: A:0.27, C:0.01, G:0.04, T:0.68
Consensus pattern (46 bp):
TTTTAATTTTATAGATTTTTCATTTTATTGAATTTTAAATATTTAA
Found at i:806041 original size:122 final size:122
Alignment explanation
Indices: 805899--806145 Score: 258
Period size: 123 Copynumber: 2.0 Consensus size: 122
805889 TGTTATAAAT
* * * * * **
805899 TTTTTAATTTTATAGA-TTTTT-CATTTTATTGTATTTTT-TGTATTTAATTTTAATTTTATAAT
1 TTTTTAATTTCATAGATTTTTTGAATTTCA-TATATTTTTATATATTTAAACTT-ATTTT-TAAT
* * *
805961 TTTTTAT-ATT-TTTTGAATTTTAAATATTTTTAAAT-ATTTTTATAATTTTTGA-ATTTTTA
63 TTTATATAATTATTTT-AATTTT--ATAATTTTAAATAATTTGTATAATTTTTGATATTTTTA
*
806020 TTTTTAGATTTCATA-ATTTTTTTGAATTTCATATATTTTTATATTTTTAAACTTATTTTTAATT
1 TTTTTA-ATTTCATAGA-TTTTTTGAATTTCATATATTTTTATATATTTAAACTTATTTTTAATT
*
806084 TTATATAATTATTTTAATTTTATAATTTTAAATAATTTGTATAATTTTTTATATTTTTA
64 TTATATAATTATTTTAATTTTATAATTTTAAATAATTTGTATAATTTTTGATATTTTTA
806143 TTT
1 TTT
806146 GTATTTTTGT
Statistics
Matches: 105, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
121 18 0.17
122 32 0.30
123 37 0.35
124 18 0.17
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.66
Consensus pattern (122 bp):
TTTTTAATTTCATAGATTTTTTGAATTTCATATATTTTTATATATTTAAACTTATTTTTAATTTT
ATATAATTATTTTAATTTTATAATTTTAAATAATTTGTATAATTTTTGATATTTTTA
Found at i:806076 original size:20 final size:20
Alignment explanation
Indices: 806053--806107 Score: 71
Period size: 19 Copynumber: 2.8 Consensus size: 20
806043 GAATTTCATA
806053 TATTTTTATATTTT-TA-AACT
1 TATTTTTA-ATTTTATATAA-T
806073 TATTTTTAATTTTATATAAT
1 TATTTTTAATTTTATATAAT
806093 TA-TTTTAATTTTATA
1 TATTTTTAATTTTATA
806108 ATTTTAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
19 18 0.55
20 13 0.39
21 2 0.06
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (20 bp):
TATTTTTAATTTTATATAAT
Found at i:806078 original size:19 final size:20
Alignment explanation
Indices: 806056--806140 Score: 60
Period size: 19 Copynumber: 4.5 Consensus size: 20
806046 TTTCATATAT
806056 TTTTATATTTT-TA-AACTTA
1 TTTTATATTTTATATAA-TTA
806075 TTTT-TAATTTTATATAATTA
1 TTTTAT-ATTTTATATAATTA
806095 TTTTA-A-TTT-TATAATT-
1 TTTTATATTTTATATAATTA
** * *
806111 TTAAATAATTTGTATAATT-
1 TTTTATATTTTATATAATTA
806130 TTTTATATTTT
1 TTTTATATTTT
806141 TATTTGTATT
Statistics
Matches: 54, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
16 3 0.06
17 8 0.15
18 7 0.13
19 25 0.46
20 9 0.17
21 2 0.04
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (20 bp):
TTTTATATTTTATATAATTA
Found at i:806128 original size:27 final size:26
Alignment explanation
Indices: 806074--806132 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 26
806064 TTTTAAACTT
* *
806074 ATTTTTAATTTTATATAATTATTTTA
1 ATTTTTAATTTTAAATAATTATTATA
806100 ATTTTATAATTTTAAATAATT-TGTATA
1 ATTTT-TAATTTTAAATAATTAT-TATA
806127 ATTTTT
1 ATTTTT
806133 TATATTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.63
Consensus pattern (26 bp):
ATTTTTAATTTTAAATAATTATTATA
Found at i:806673 original size:5 final size:5
Alignment explanation
Indices: 806663--806687 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
806653 TAAAATTTTA
806663 AATAT AATAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT
806688 TAAATTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATAT
Found at i:806702 original size:27 final size:26
Alignment explanation
Indices: 806616--806702 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 26
806606 TTTTAAAGTG
806616 TTAATT-ATATAAATATAATA-T-AAT
1 TTAATTAATAT-AATATAATATTAAAT
* ** * *
806640 TTATTTAATATGTTAAAATTTTAAAT
1 TTAATTAATATAATATAATATTAAAT
*
806666 ATAATATAATATAATATAATATTAAAT
1 TTAAT-TAATATAATATAATATTAAAT
806693 TTAAATTAAT
1 TT-AATTAAT
806703 TATATTTTTT
Statistics
Matches: 46, Mismatches: 12, Indels: 7
0.71 0.18 0.11
Matches are distributed among these distances:
24 10 0.22
25 5 0.11
26 6 0.13
27 22 0.48
28 3 0.07
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (26 bp):
TTAATTAATATAATATAATATTAAAT
Found at i:806772 original size:13 final size:13
Alignment explanation
Indices: 806754--806778 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
806744 TATTCAATCA
806754 TTTATATTATATT
1 TTTATATTATATT
806767 TTTATATTATAT
1 TTTATATTATAT
806779 ATAAAATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTATATTATATT
Found at i:806845 original size:21 final size:22
Alignment explanation
Indices: 806811--806851 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
806801 TAATTTATTT
*
806811 ATTTCTTATCTTTTCTATTTAC
1 ATTTCTTATCTTTTATATTTAC
*
806833 ATTT-TTATTTTTTATATTT
1 ATTTCTTATCTTTTATATTT
806852 TATTTAGAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.71
Consensus pattern (22 bp):
ATTTCTTATCTTTTATATTTAC
Found at i:810520 original size:15 final size:15
Alignment explanation
Indices: 810500--810534 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
810490 AAAAAGTCAC
810500 AACTTATGTTATTCA
1 AACTTATGTTATTCA
810515 AACTTATGTTATTCA
1 AACTTATGTTATTCA
*
810530 GACTT
1 AACTT
810535 TTTTATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.46
Consensus pattern (15 bp):
AACTTATGTTATTCA
Found at i:810570 original size:134 final size:134
Alignment explanation
Indices: 810307--810570 Score: 302
Period size: 134 Copynumber: 2.0 Consensus size: 134
810297 ATGTATTTTC
*
810307 TTTAGAAAAAAAATCATGAAAATTTACAAAAATGAAAATTTTAAAATTGAAAAAGTCACAAGTTA
1 TTTAGAAAAAAAATCATGAAAATTTACAAAAATGAAAATTTTAAAATTGAAAAAGTCACAACTTA
** * *** *
810372 TATTATTCTGACTTTTTTTATATTTTAAAAGTATTCATATTCGTATTTATATTCGATATTTTTTT
66 TATTATTCAAACTTTTTTTAGATTTTAAAAGTATTCATAAAAGTATTCATATTCGATA-TTTTTT
810437 TATGT
130 TATGT
* * **
810442 TTTAG-AAAAAAATCATGAAACTTTATAAAAATGAAAATTTTAAGTTTGAAAAAGTCACAACTTA
1 TTTAGAAAAAAAATCATGAAAATTTACAAAAATGAAAATTTTAAAATTGAAAAAGTCACAACTTA
* ** *
810506 TGTTATTCAAACTTATGTTATTCAGACTTTT-TTA-TATT-TTAAAAGTATTCATATTCGATATT
66 TATTATTCAAACTT-T-TT-TT-AGA-TTTTAAAAGTATTCATAAAAGTATTCATATTCGATATT
810568 TTT
126 TTT
810571 ATTCAATATA
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
134 65 0.60
135 11 0.10
136 19 0.18
137 6 0.06
138 3 0.03
139 4 0.04
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.44
Consensus pattern (134 bp):
TTTAGAAAAAAAATCATGAAAATTTACAAAAATGAAAATTTTAAAATTGAAAAAGTCACAACTTA
TATTATTCAAACTTTTTTTAGATTTTAAAAGTATTCATAAAAGTATTCATATTCGATATTTTTTT
ATGT
Found at i:811843 original size:17 final size:16
Alignment explanation
Indices: 811815--811852 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 16
811805 TTCAAGGTGA
811815 ATAT-TACGTATAAAT
1 ATATATACGTATAAAT
811830 ATATATACGATATAAAT
1 ATATATACG-TATAAAT
811847 ATATAT
1 ATATAT
811853 TTAATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 4 0.19
16 4 0.19
17 13 0.62
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.39
Consensus pattern (16 bp):
ATATATACGTATAAAT
Found at i:814267 original size:16 final size:16
Alignment explanation
Indices: 814246--814289 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
814236 TAATTAATAT
814246 TATATATATTTTAAAA
1 TATATATATTTTAAAA
**
814262 TATATAT-TTTTATCA
1 TATATATATTTTAAAA
814277 TAT-TATATTTTAA
1 TATATATATTTTAA
814290 TTATTTTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 3 0.12
15 14 0.58
16 7 0.29
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (16 bp):
TATATATATTTTAAAA
Found at i:814298 original size:16 final size:16
Alignment explanation
Indices: 814250--814290 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
814240 TAATATTATA
*
814250 TATATTTTAA-AATA-
1 TATATTTTAATCATAT
*
814264 TATATTTTTATCATAT
1 TATATTTTAATCATAT
814280 TATATTTTAAT
1 TATATTTTAAT
814291 TATTTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
14 9 0.41
15 3 0.14
16 10 0.45
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (16 bp):
TATATTTTAATCATAT
Found at i:814352 original size:17 final size:17
Alignment explanation
Indices: 814330--814370 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
814320 TTTTTGTTAA
*
814330 AAAAATATATTTTCATT
1 AAAAATATATTTTCAAT
814347 AAAAATATATTTTCAAT
1 AAAAATATATTTTCAAT
814364 AAAAATA
1 AAAAATA
814371 CTTAAGTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAAATATATTTTCAAT
Found at i:814994 original size:2 final size:2
Alignment explanation
Indices: 814989--815014 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
814979 ATTTATTTTT
814989 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
815015 CGAAGCTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:815207 original size:13 final size:13
Alignment explanation
Indices: 815189--815216 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
815179 ATTGTGCCTG
815189 CATATGTTAATAA
1 CATATGTTAATAA
815202 CATATGTTAATAA
1 CATATGTTAATAA
815215 CA
1 CA
815217 AAAAATAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.36
Consensus pattern (13 bp):
CATATGTTAATAA
Found at i:815415 original size:17 final size:18
Alignment explanation
Indices: 815395--815429 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
815385 AATTTTATTA
815395 AAATATA-AATTATTTTT
1 AAATATATAATTATTTTT
815412 AAATATATAATTATTTTT
1 AAATATATAATTATTTTT
815430 TACAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
AAATATATAATTATTTTT
Found at i:815430 original size:19 final size:19
Alignment explanation
Indices: 815386--815437 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
815376 GCTACTTGAA
815386 ATTTTATTAAAATATAAATT
1 ATTTT-TTAAAATATAAATT
815406 A-TTTTT-AAATATATAATT
1 ATTTTTTAAAATATA-AATT
815424 ATTTTTTACAAATA
1 ATTTTTTA-AAATA
815438 AATAAAACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
17 7 0.25
18 7 0.25
19 8 0.29
20 1 0.04
21 5 0.18
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTTTTAAAATATAAATT
Found at i:815949 original size:22 final size:22
Alignment explanation
Indices: 815921--815962 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
815911 ATGAAAGCAA
815921 TTATTATTAAATAA-TAATTATT
1 TTATTATTAAA-AATTAATTATT
815943 TTATTATTAAAAATTAATTA
1 TTATTATTAAAAATTAATTA
815963 AATAGTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TTATTATTAAAAATTAATTATT
Found at i:821358 original size:20 final size:20
Alignment explanation
Indices: 821330--821404 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
821320 TCATACCCTG
821330 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
821350 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * * *
821370 ATGTATCAATATATTCTACA
1 ATGTATCGATACATTTTTCA
821390 ATGTATCGATACATT
1 ATGTATCGATACATT
821405 ATGTCTTTTT
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:821397 original size:40 final size:39
Alignment explanation
Indices: 821330--821407 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
821320 TCATACCCTG
* * *
821330 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCAATACATTCTACAATATATCGATACAT-TATGA
* *
821370 ATGTATCAATATATTCTACAATGTATCGATACATTATG
1 ATGTATCAATACATTCTACAATATATCGATACATTATG
821408 TCTTTTTACC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.40
Consensus pattern (39 bp):
ATGTATCAATACATTCTACAATATATCGATACATTATGA
Found at i:833847 original size:12 final size:11
Alignment explanation
Indices: 833825--833900 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
833815 AGAGAAAGAA
*
833825 GAGAGAGGAGG
1 GAGATAGGAGG
833836 GATGATAGGAGG
1 GA-GATAGGAGG
*
833848 AGAGACAGGA--
1 -GAGATAGGAGG
*
833858 GAGATAGTA--
1 GAGATAGGAGG
833867 GAGATAGGAGG
1 GAGATAGGAGG
833878 GATGATAGGAGG
1 GA-GATAGGAGG
*
833890 AGAGACAGGAG
1 -GAGATAGGAG
833901 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:833857 original size:24 final size:24
Alignment explanation
Indices: 833824--833909 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
833814 AAGAGAAAGA
*
833824 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
833848 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
833866 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
833890 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
833910 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:833876 original size:42 final size:42
Alignment explanation
Indices: 833815--833933 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
833805 TAGCCCTCAA
* *
833815 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
833857 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
833899 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
833934 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:842139 original size:13 final size:12
Alignment explanation
Indices: 842116--842161 Score: 65
Period size: 13 Copynumber: 3.6 Consensus size: 12
842106 TCGTTACACC
842116 CAAAAAAAAAAA
1 CAAAAAAAAAAA
842128 CAAAACAAAAAAA
1 CAAAA-AAAAAAA
842141 CAAAAAAAAAATA
1 CAAAAAAAAAA-A
842154 GCAAAAAA
1 -CAAAAAA
842162 TAGAAGGGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
12 11 0.35
13 13 0.42
14 7 0.23
ACGTcount: A:0.85, C:0.11, G:0.02, T:0.02
Consensus pattern (12 bp):
CAAAAAAAAAAA
Found at i:843925 original size:32 final size:32
Alignment explanation
Indices: 843385--844518 Score: 1235
Period size: 32 Copynumber: 37.2 Consensus size: 32
843375 TGTTCATCCC
*
843385 TTTCAAAG-CC-CACAAGTCAGTGGC-ACTCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAAC-CCA
* * *
843414 TTTCAAAGCCCACA-AA-TCAGTGGC-ACTCT
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
843443 TTTCAAAG-CC-CACAAGTCAGTGGC-ACCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
843471 TTTCAAAG-CC-CACAAGTCAGTGGC-ACTCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAAC-CCA
* ** * *
843500 TTTCAAAG-CC-TACAAGTTAGTGGC-ACTCT
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
* * *
843529 TTTCAAAGCCCACA-AA-TCAGTGGC-ACTCT
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
* *
843558 TTTTAAAG-CC-CACAAGTCAGTGGC-ACTCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAAC-CCA
*
843587 TTTCAAAG-CC-CACAAGTCAGTGGC-ACTCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAAC-CCA
* * *
843616 TTTCAAAGCCCACA-AA-TCAGTGGC-ACTCT
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
* *
843645 TTTTAAAG-CC-CACAAGTCAGTGGC-ACTCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAAC-CCA
*
843674 TTTCAAAG-CC-CACAAGTCAGTGGC-ACTCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAAC-CCA
* * *
843703 TTTCAAAGCCCACA-AA-TCAGTGGC-ACTCT
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
843732 TTTCAAAG-CC-CACAAGTCAGTGGC-ACCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
* ** *
843760 TTTCAAAG-CC-CACAACTCATTGGC-ATCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
843788 TTTCAAAG-CC-CACAAGTCAGTGGC-ACTCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAAC-CCA
* * * *
843817 TTTCAAAG-CC-CACAAGCCAGTGGC-ACTCT
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
* **
843846 TTTCAGAG-CC-CACAAGTTAGTGGC-ACCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
843874 TTTCAGAG-CC-CACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
843904 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
843936 TTCCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
843968 TTCCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
844000 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
844032 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
* *
844064 TTCCAAAGCCCACACAAGTCGGTGGCAACTCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
844096 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
844128 TTTCAAACCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
844160 TTTCAAAACCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
844192 TTCCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
844224 TTCCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
844256 TTGCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
844288 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
844320 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
844352 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
844384 TTTCAAAACCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
* * *
844416 TTCCAAAGCCCACACAAGTCGGTAGCAACTCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
844448 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
* ** * *
844480 TTTAAAAGCCCATGCAAGTCAGTGGCAACCCT
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
844512 TTTCAAA
1 TTTCAAA
844519 TCACCATATT
Statistics
Matches: 1019, Mismatches: 57, Indels: 55
0.90 0.05 0.05
Matches are distributed among these distances:
27 8 0.01
28 117 0.11
29 283 0.28
30 25 0.02
31 9 0.01
32 577 0.57
ACGTcount: A:0.30, C:0.34, G:0.17, T:0.19
Consensus pattern (32 bp):
TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
Found at i:845075 original size:20 final size:20
Alignment explanation
Indices: 845047--845121 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
845037 TCATACCCTG
845047 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
845067 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * * *
845087 ATGTATCAATATATTCTACA
1 ATGTATCGATACATTTTTCA
845107 ATGTATCGATACATT
1 ATGTATCGATACATT
845122 ATGTCTTTTT
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:845114 original size:40 final size:39
Alignment explanation
Indices: 845047--845124 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
845037 TCATACCCTG
* * *
845047 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCAATACATTCTACAATATATCGATACAT-TATGA
* *
845087 ATGTATCAATATATTCTACAATGTATCGATACATTATG
1 ATGTATCAATACATTCTACAATATATCGATACATTATG
845125 TCTTTTTACC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.40
Consensus pattern (39 bp):
ATGTATCAATACATTCTACAATATATCGATACATTATGA
Found at i:848647 original size:16 final size:16
Alignment explanation
Indices: 848626--848703 Score: 54
Period size: 17 Copynumber: 4.8 Consensus size: 16
848616 TGTTTTTACT
848626 TTTTATTATATAATAA
1 TTTTATTATATAATAA
*
848642 TTTTATT-TAAAAT-A
1 TTTTATTATATAATAA
* *
848656 TTTTATATTTATGCA-AA
1 TTTTAT-TATAT-AATAA
* *
848673 TTTTAATATATTCATAA
1 TTTTATTATA-TAATAA
848690 TTTATATTATATAA
1 TTT-TATTATATAA
848704 ACTTTAAAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
14 7 0.15
15 6 0.12
16 14 0.29
17 15 0.31
18 6 0.12
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (16 bp):
TTTTATTATATAATAA
Found at i:849152 original size:23 final size:23
Alignment explanation
Indices: 849136--849180 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 23
849126 ATTTTATTAT
849136 TTTTTAAAT-TTTTATTTTTAAC
1 TTTTTAAATATTTTATTTTTAAC
849158 TTTTTAAATATTTTTAATTTTTA
1 TTTTTAAATA-TTTT-ATTTTTA
849181 TTGATCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 9 0.45
24 4 0.20
25 7 0.35
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (23 bp):
TTTTTAAATATTTTATTTTTAAC
Found at i:849276 original size:26 final size:26
Alignment explanation
Indices: 849220--849338 Score: 71
Period size: 26 Copynumber: 4.5 Consensus size: 26
849210 TTTAACATTT
*
849220 TTTTATAATTTTATAAATTTTTTATA
1 TTTTATAATTTTATAAAGTTTTTATA
* * *
849246 ATTTATATTTTTATAAGCGTTTTTA-A
1 TTTTATAATTTTATAA-AGTTTTTATA
* ** *
849272 TTTTATAGATTTT-TCATTTTTTTGTA
1 TTTTATA-ATTTTATAAAGTTTTTATA
** * *
849298 TTTTATTTTTATTTTAAAATTTTTATA
1 TTTTATAATT-TTATAAAGTTTTTATA
*
849325 TTTTTTGAATTTTA
1 TTTTAT-AATTTTA
849339 AATATATTTT
Statistics
Matches: 67, Mismatches: 20, Indels: 11
0.68 0.20 0.11
Matches are distributed among these distances:
25 7 0.10
26 32 0.48
27 26 0.39
28 2 0.03
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (26 bp):
TTTTATAATTTTATAAAGTTTTTATA
Found at i:849320 original size:36 final size:38
Alignment explanation
Indices: 849265--849338 Score: 100
Period size: 36 Copynumber: 2.0 Consensus size: 38
849255 TTTATAAGCG
* *
849265 TTTTTAATTTTATAGATTTTTCAT-TTTTTTGTATTTTA
1 TTTTTAATTTTATAAATTTTT-ATATTTTTTGAATTTTA
849303 TTTTT-ATTTTA-AAATTTTTATATTTTTTGAATTTTA
1 TTTTTAATTTTATAAATTTTTATATTTTTTGAATTTTA
849339 AATATATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 2 0.06
36 20 0.61
37 6 0.18
38 5 0.15
ACGTcount: A:0.24, C:0.01, G:0.04, T:0.70
Consensus pattern (38 bp):
TTTTTAATTTTATAAATTTTTATATTTTTTGAATTTTA
Found at i:849347 original size:36 final size:37
Alignment explanation
Indices: 849271--849353 Score: 89
Period size: 36 Copynumber: 2.2 Consensus size: 37
849261 AGCGTTTTTA
* * ** *
849271 ATTTTATAGATTTTTCATTTTTTTGTATTTTATTTTT
1 ATTTTATAAATTTTTCATTTTTTTGAATTTTAAATAT
849308 ATTTTA-AAATTTTT-ATATTTTTTGAATTTTAAATAT
1 ATTTTATAAATTTTTCAT-TTTTTTGAATTTTAAATAT
849344 ATTTTTATAA
1 A-TTTTATAA
849354 TCTTTTGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
35 2 0.05
36 23 0.61
37 11 0.29
38 2 0.05
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (37 bp):
ATTTTATAAATTTTTCATTTTTTTGAATTTTAAATAT
Found at i:849426 original size:59 final size:56
Alignment explanation
Indices: 849304--849513 Score: 169
Period size: 58 Copynumber: 3.6 Consensus size: 56
849294 TGTATTTTAT
*
849304 TTTTATTTTAAAATTTTTATA-TTTTTTGAATTTTAAATATATTTTTATAATCTTTTGAAA
1 TTTTATTTT-TAATTTTTATATTTTTTTGAATTTT--ATA-A-TTTTATAATCTTTTGAAA
* *
849364 TTTTAGTTTTTAGTTTTTCATATTTTGTTTGAATTTTATAGATTTTAT-ATTTTTTGAAA
1 TTTTA-TTTTTAATTTTT-ATATTTT-TTTGAATTTTATA-ATTTTATAATCTTTTGAAA
* * **
849423 TTTTATTTTTAATTTATAAATTTTTTTTGTAATTTTATAATTTT-TAAATAATTTGAATA
1 TTTTATTTTTAATTTTTATA-TTTTTTTG-AATTTTATAATTTTAT-AATCTTTTGAA-A
* * * *
849482 ATTT-TTTTAAATTTTTTTATTTTCTT-AATTTT
1 TTTTATTTTTAATTTTTATATTTTTTTGAATTTT
849514 TAAAATTAAT
Statistics
Matches: 126, Mismatches: 15, Indels: 23
0.77 0.09 0.14
Matches are distributed among these distances:
55 6 0.05
56 1 0.01
57 17 0.13
58 42 0.33
59 19 0.15
60 17 0.13
61 11 0.09
62 3 0.02
63 10 0.08
ACGTcount: A:0.29, C:0.01, G:0.05, T:0.65
Consensus pattern (56 bp):
TTTTATTTTTAATTTTTATATTTTTTTGAATTTTATAATTTTATAATCTTTTGAAA
Found at i:849445 original size:20 final size:22
Alignment explanation
Indices: 849420--849468 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
849410 ATATTTTTTG
849420 AAATTTTATTTT-TAA-TTTAT
1 AAATTTTATTTTGTAATTTTAT
849440 AAATTTT-TTTTGTAATTTTAT
1 AAATTTTATTTTGTAATTTTAT
*
849461 AATTTTTA
1 AAATTTTA
849469 AATAATTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 4 0.16
20 10 0.40
21 11 0.44
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
AAATTTTATTTTGTAATTTTAT
Found at i:849459 original size:21 final size:19
Alignment explanation
Indices: 849420--849467 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 19
849410 ATATTTTTTG
849420 AAATTTTATTTTTAATTTAT
1 AAATTTT-TTTTTAATTTAT
849440 AAATTTTTTTTGTAATTT-T
1 AAATTTTTTTT-TAATTTAT
849459 ATAATTTTT
1 A-AATTTTT
849468 AAATAATTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.23
20 20 0.77
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
AAATTTTTTTTTAATTTAT
Found at i:849619 original size:24 final size:23
Alignment explanation
Indices: 849582--849638 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
849572 CGTTAAATTT
849582 TTAAAATTATTTAATAAAATAAAAA
1 TTAAAA-TATTTAATAAAA-AAAAA
* *
849607 TTAAAATATTTAATTAAAAAATA
1 TTAAAATATTTAATAAAAAAAAA
*
849630 TTATAATAT
1 TTAAAATAT
849639 AAAATTAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 12 0.41
24 11 0.38
25 6 0.21
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
TTAAAATATTTAATAAAAAAAAA
Found at i:849627 original size:15 final size:17
Alignment explanation
Indices: 849609--849642 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
849599 AATAAAAATT
849609 AAAATATT-TAAT-TAA
1 AAAATATTATAATATAA
849624 AAAATATTATAATATAA
1 AAAATATTATAATATAA
849641 AA
1 AA
849643 TTAATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 4 0.24
17 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAATATTATAATATAA
Found at i:850183 original size:2 final size:2
Alignment explanation
Indices: 850176--850218 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
850166 ATAGCTTTTA
850176 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
850218 A
1 A
850219 GAGAGAGAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:850223 original size:2 final size:2
Alignment explanation
Indices: 850218--850252 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
850208 ATATATATAT
850218 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
850253 AAAATGTTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:851934 original size:2 final size:2
Alignment explanation
Indices: 851915--851980 Score: 77
Period size: 2 Copynumber: 35.0 Consensus size: 2
851905 ATCTTTAAAT
* *
851915 TA TA TC TA TA TC TA TA TA TA TA TA TA TA -A T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
851955 -A T- TT TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
851981 ATTTTATCAA
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
1 4 0.07
2 51 0.93
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:851962 original size:26 final size:26
Alignment explanation
Indices: 851931--851987 Score: 96
Period size: 26 Copynumber: 2.1 Consensus size: 26
851921 TATATCTATA
851931 TATATATATATAATTATATATATAATTT
1 TATATATATAT-A-TATATATATAATTT
851959 TATATATATATATATATATATAATTT
1 TATATATATATATATATATATAATTT
851985 TAT
1 TAT
851988 CAACAAAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 17 0.59
27 1 0.03
28 11 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (26 bp):
TATATATATATATATATATATAATTT
Found at i:852201 original size:10 final size:11
Alignment explanation
Indices: 852186--852238 Score: 51
Period size: 11 Copynumber: 5.1 Consensus size: 11
852176 ATTATTTGAT
852186 ATTT-AATAAA
1 ATTTAAATAAA
852196 ATTTAAATAAA
1 ATTTAAATAAA
*
852207 A-TT--ATTAA
1 ATTTAAATAAA
*
852215 ATTTAAAAATAA
1 ATTTAAATA-AA
852227 ATTTAAATAAA
1 ATTTAAATAAA
852238 A
1 A
852239 AATTAATATT
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
8 5 0.15
9 2 0.06
10 6 0.18
11 11 0.32
12 10 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
ATTTAAATAAA
Found at i:852250 original size:18 final size:19
Alignment explanation
Indices: 852209--852250 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
852199 TAAATAAAAT
*
852209 TATTAAATTTAAAAATAAA
1 TATTAAATTAAAAAATAAA
*
852228 T-TTAAA-TAAAAAATTAA
1 TATTAAATTAAAAAATAAA
852245 TATTAA
1 TATTAA
852251 TATTTTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 10 0.50
18 9 0.45
19 1 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TATTAAATTAAAAAATAAA
Found at i:861785 original size:26 final size:26
Alignment explanation
Indices: 861749--861800 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
861739 AGAGTTCAAT
861749 CAACAATAAATCTTCAGCGACATGTC
1 CAACAATAAATCTTCAGCGACATGTC
861775 CAACAATAAATCTTCAGCGACATGTC
1 CAACAATAAATCTTCAGCGACATGTC
861801 AAGCAGGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.23
Consensus pattern (26 bp):
CAACAATAAATCTTCAGCGACATGTC
Found at i:867770 original size:21 final size:22
Alignment explanation
Indices: 867746--867794 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
867736 TAATTTTTTT
*
867746 AAAATTATTTATTTT-TATTAA
1 AAAATTATTAATTTTATATTAA
*
867767 AAAA-TATTAATTTTATTTTAA
1 AAAATTATTAATTTTATATTAA
867788 AAAATTA
1 AAAATTA
867795 CATAATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 9 0.38
21 13 0.54
22 2 0.08
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AAAATTATTAATTTTATATTAA
Found at i:867774 original size:20 final size:19
Alignment explanation
Indices: 867736--867792 Score: 62
Period size: 21 Copynumber: 2.9 Consensus size: 19
867726 TTTTTATTTA
*
867736 TAATTTTTTT-AAAATTAT
1 TAATTTTTTTAAAAAATAT
*
867754 TTATTTTTATTAAAAAATAT
1 TAATTTTT-TTAAAAAATAT
867774 TAATTTTATTTTAAAAAAT
1 TAA-TTT-TTTTAAAAAAT
867793 TACATAATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
18 7 0.22
19 2 0.06
20 9 0.28
21 12 0.38
22 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TAATTTTTTTAAAAAATAT
Found at i:867780 original size:19 final size:20
Alignment explanation
Indices: 867736--867783 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
867726 TTTTTATTTA
* *
867736 TAATTTT-TTTAAAATTATT
1 TAATTTTATTAAAAAATATT
*
867755 TATTTTTATTAAAAAATA-T
1 TAATTTTATTAAAAAATATT
867774 TAATTTTATT
1 TAATTTTATT
867784 TTAAAAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TAATTTTATTAAAAAATATT
Found at i:867789 original size:19 final size:19
Alignment explanation
Indices: 867742--867794 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
867732 TTTATAATTT
*
867742 TTTTAAAATTATTTATTTTTA
1 TTTTAAAA-TA-TTAATTTTA
**
867763 TTAAAAAATATTAATTTTA
1 TTTTAAAATATTAATTTTA
*
867782 TTTTAAAAAATTA
1 TTTTAAAATATTA
867795 CATAATTATA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 18 0.69
20 2 0.08
21 6 0.23
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTAAAATATTAATTTTA
Found at i:867922 original size:14 final size:16
Alignment explanation
Indices: 867903--867936 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
867893 ATCATTATTA
867903 ATAAAA-TTAAT-ATC
1 ATAAAATTTAATAATC
867917 ATAAAATTTAATAATC
1 ATAAAATTTAATAATC
867933 ATAA
1 ATAA
867937 TAATACTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 5 0.28
16 7 0.39
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (16 bp):
ATAAAATTTAATAATC
Found at i:869182 original size:15 final size:16
Alignment explanation
Indices: 869141--869185 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
869131 GTGAATATTC
*
869141 TTAATAAGAAAAAAATT
1 TTAATAA-ATAAAAATT
869158 TTAATAAATAAAAATT
1 TTAATAAATAAAAATT
869174 TTAAT-AATAAAA
1 TTAATAAATAAAA
869186 TAATAAGCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 7 0.26
16 13 0.48
17 7 0.26
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (16 bp):
TTAATAAATAAAAATT
Found at i:871950 original size:26 final size:27
Alignment explanation
Indices: 871893--871952 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
871883 TTTAATATTT
* * *
871893 TTTAAATATAAATATAAAAATATAATAT
1 TTTAAATAT-AATAAAAAAATATAAAAA
*
871921 TTTAAATAT-ATAAAAAAATTTAAAAA
1 TTTAAATATAATAAAAAAATATAAAAA
871947 TTTAAA
1 TTTAAA
871953 ATTTAATACT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 19 0.68
28 9 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (27 bp):
TTTAAATATAATAAAAAAATATAAAAA
Found at i:872392 original size:28 final size:25
Alignment explanation
Indices: 872355--872438 Score: 75
Period size: 28 Copynumber: 3.3 Consensus size: 25
872345 TATTCATATC
* *
872355 ATATTAATATTAT-TTTTATGTTATAAT
1 ATATTTATATTATATTTTA-ATTAT--T
872382 ATATTTTATATTATATTTTAATTATT
1 ATA-TTTATATTATATTTTAATTATT
*
872408 ATATTTATATTATATAATT--TTATT
1 ATATTTATATTATAT-TTTAATTATT
872432 ATATTTA
1 ATATTTA
872439 ACATTATCAG
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
24 12 0.24
25 12 0.24
26 6 0.12
27 3 0.06
28 13 0.25
29 5 0.10
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (25 bp):
ATATTTATATTATATTTTAATTATT
Found at i:872395 original size:5 final size:5
Alignment explanation
Indices: 872343--872436 Score: 50
Period size: 5 Copynumber: 18.2 Consensus size: 5
872333 TATATATTCA
* * * *
872343 TATAT TCATAT CATAT TAATAT TATTTT TATGT TATAAT ATATTT TATAT
1 TATAT T-ATAT TATAT T-ATAT TA-TAT TATAT TAT-AT -TATAT TATAT
* * *
872393 TATAT TTTAA T-TAT TATATT TATAT TATA- TA-AT TTTAT TATAT T
1 TATAT TATAT TATAT TATA-T TATAT TATAT TATAT TATAT TATAT T
872437 TAACATTATC
Statistics
Matches: 68, Mismatches: 12, Indels: 18
0.69 0.12 0.18
Matches are distributed among these distances:
3 1 0.01
4 6 0.09
5 38 0.56
6 20 0.29
7 3 0.04
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:872407 original size:14 final size:13
Alignment explanation
Indices: 872381--872433 Score: 65
Period size: 14 Copynumber: 4.0 Consensus size: 13
872371 TATGTTATAA
872381 TATATTTTA-TAT
1 TATATTTTATTAT
872393 TATATTTTAATTAT
1 TATATTTT-ATTAT
872407 TATATTTATATTA-
1 TATATTT-TATTAT
872420 TATAATTTTATTAT
1 TAT-ATTTTATTAT
872434 ATTTAACATT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
12 8 0.22
13 9 0.25
14 18 0.50
15 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TATATTTTATTAT
Found at i:872418 original size:11 final size:11
Alignment explanation
Indices: 872343--872438 Score: 58
Period size: 11 Copynumber: 8.7 Consensus size: 11
872333 TATATATTCA
*
872343 TATATTCATAT
1 TATATTTATAT
* *
872354 CATATTAATAT
1 TATATTTATAT
* *
872365 TATTTTTATGT
1 TATATTTATAT
872376 TATA---ATA-
1 TATATTTATAT
872383 TAT-TTTATAT
1 TATATTTATAT
872393 TATATTTTAATTAT
1 TATA-TTT-A-TAT
872407 TATATTTATAT
1 TATATTTATAT
*
872418 TATATAATTTTAT
1 TATAT--TTATAT
872431 TATATTTA
1 TATATTTA
872439 ACATTATCAG
Statistics
Matches: 65, Mismatches: 10, Indels: 20
0.68 0.11 0.21
Matches are distributed among these distances:
7 3 0.05
8 2 0.03
9 3 0.05
10 3 0.05
11 29 0.45
12 4 0.06
13 14 0.22
14 7 0.11
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.60
Consensus pattern (11 bp):
TATATTTATAT
Found at i:872894 original size:15 final size:17
Alignment explanation
Indices: 872861--872899 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
872851 ATTTTGTTAA
*
872861 ATATTGAATATGAATAT
1 ATATTTAATATGAATAT
872878 ATATTTAATAT-AA-AT
1 ATATTTAATATGAATAT
872893 ATATTTA
1 ATATTTA
872900 TTTTTTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
16 2 0.10
17 10 0.48
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (17 bp):
ATATTTAATATGAATAT
Found at i:872931 original size:16 final size:16
Alignment explanation
Indices: 872910--872940 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
872900 TTTTTTTAAA
*
872910 AAAAAATTATATATTT
1 AAAAAATCATATATTT
872926 AAAAAATCATATATT
1 AAAAAATCATATATT
872941 GTGAATTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (16 bp):
AAAAAATCATATATTT
Found at i:877434 original size:17 final size:16
Alignment explanation
Indices: 877411--877454 Score: 65
Period size: 17 Copynumber: 2.8 Consensus size: 16
877401 TTAAAAATTT
877411 AATATATTTATATTAA
1 AATATATTTATATTAA
877427 ATATATATTTATA-TAA
1 A-ATATATTTATATTAA
877443 AA-ATATTTATAT
1 AATATATTTATAT
877455 CTTATACTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 9 0.35
15 1 0.04
16 5 0.19
17 11 0.42
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
AATATATTTATATTAA
Found at i:877980 original size:22 final size:21
Alignment explanation
Indices: 877955--878008 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
877945 ATTATAATCT
*
877955 TTAATATATTAAAAAAGTATTA
1 TTAAAATATTAAAAAAGTA-TA
* *
877977 TTAAAATTATAAAAAAATTATA
1 TTAAAA-TATTAAAAAAGTATA
*
877999 TTAACATATT
1 TTAAAATATT
878009 TTGTTCATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 3 0.12
22 12 0.46
23 11 0.42
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
TTAAAATATTAAAAAAGTATA
Found at i:881437 original size:48 final size:46
Alignment explanation
Indices: 881366--881462 Score: 167
Period size: 48 Copynumber: 2.1 Consensus size: 46
881356 GGAAAATGCT
*
881366 CTTGCTCCGATGTTGTGGATGACCTTCAAGTACAAGTTTCAGCCCAAA
1 CTTGCTCCGAAGTTGTGGATGACCTTCAAGTACAAG-TT-AGCCCAAA
881414 CTTGCTCCGAAGTTGTGGATGACCTTCAAGTACAAGTTAGCCCAAA
1 CTTGCTCCGAAGTTGTGGATGACCTTCAAGTACAAGTTAGCCCAAA
881460 CTT
1 CTT
881463 CGATCGATGA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 11 0.23
47 2 0.04
48 35 0.73
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.29
Consensus pattern (46 bp):
CTTGCTCCGAAGTTGTGGATGACCTTCAAGTACAAGTTAGCCCAAA
Found at i:885317 original size:8 final size:8
Alignment explanation
Indices: 885304--885336 Score: 52
Period size: 7 Copynumber: 4.4 Consensus size: 8
885294 TGGGTGGTTT
885304 GGGGGG-G
1 GGGGGGAG
885311 GGGGGG-G
1 GGGGGGAG
885318 GGGGGGAG
1 GGGGGGAG
885326 GGGGGGAG
1 GGGGGGAG
885334 GGG
1 GGG
885337 TGGATTGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 13 0.52
8 12 0.48
ACGTcount: A:0.06, C:0.00, G:0.94, T:0.00
Consensus pattern (8 bp):
GGGGGGAG
Found at i:885671 original size:14 final size:15
Alignment explanation
Indices: 885593--885668 Score: 66
Period size: 14 Copynumber: 5.1 Consensus size: 15
885583 ATGAAAAAAT
*
885593 ATATATATAATATTAT
1 ATATATATAATA-TAA
* *
885609 ATAAAAATAATATAA
1 ATATATATAATATAA
885624 ATATATATAA-ATAA
1 ATATATATAATATAA
**
885638 ATATATATTTTA-AA
1 ATATATATAATATAA
* *
885652 ATTTATATAATACAA
1 ATATATATAATATAA
885667 AT
1 AT
885669 TATTAACGAA
Statistics
Matches: 48, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
14 23 0.48
15 15 0.31
16 10 0.21
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (15 bp):
ATATATATAATATAA
Found at i:885717 original size:18 final size:19
Alignment explanation
Indices: 885694--885731 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
885684 TTTTATATAA
885694 ATATATAA-TAAAATTTTT
1 ATATATAATTAAAATTTTT
*
885712 ATATATAATTATAATTTTT
1 ATATATAATTAAAATTTTT
885731 A
1 A
885732 AAATTAACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATATATAATTAAAATTTTT
Found at i:888200 original size:2 final size:2
Alignment explanation
Indices: 888186--888225 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
888176 ATCAATTAAT
* *
888186 TA TA TA TG T- TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
888226 TTGTGTGTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:889240 original size:12 final size:12
Alignment explanation
Indices: 889223--889252 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
889213 TATAATATTT
889223 TATAAAAAATAA
1 TATAAAAAATAA
*
889235 TATAAAAACTAA
1 TATAAAAAATAA
889247 TATAAA
1 TATAAA
889253 TATATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (12 bp):
TATAAAAAATAA
Found at i:889685 original size:13 final size:13
Alignment explanation
Indices: 889652--889685 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
889642 TTTTATTTTT
*
889652 TATTATTAATATT
1 TATTATTAATATA
*
889665 TATAATTAATATA
1 TATTATTAATATA
889678 TATTATTA
1 TATTATTA
889686 TTAATAATGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATTATTAATATA
Found at i:889866 original size:22 final size:21
Alignment explanation
Indices: 889820--889866 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
889810 ATTTATTGAG
889820 AAAGTAATTAACTTAATATACA
1 AAAGTAATTAACTTAATATA-A
*
889842 AAAGTAATTAATTTAGAGTATAA
1 AAAGTAATTAACTTA-A-TATAA
889865 AA
1 AA
889867 TTTATATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 14 0.64
23 4 0.18
24 4 0.18
ACGTcount: A:0.55, C:0.04, G:0.09, T:0.32
Consensus pattern (21 bp):
AAAGTAATTAACTTAATATAA
Found at i:890265 original size:2 final size:2
Alignment explanation
Indices: 890260--890330 Score: 56
Period size: 2 Copynumber: 36.5 Consensus size: 2
890250 TTGGACACAC
* * * * **
890260 AT AT AT AT AT AT AT AT AT AT A- AT TT AG AT A- AA AT TT GG AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
890300 AT AT AT AT AT AT AT AT AT AC AT AG AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
890331 ATTTGCAAGT
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
1 2 0.04
2 51 0.96
ACGTcount: A:0.49, C:0.01, G:0.06, T:0.44
Consensus pattern (2 bp):
AT
Found at i:890514 original size:15 final size:15
Alignment explanation
Indices: 890494--890523 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
890484 TATATTTTAA
*
890494 TTTTTAAATAATATT
1 TTTTTAAAAAATATT
890509 TTTTTAAAAAATATT
1 TTTTTAAAAAATATT
890524 GCACACTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTTTAAAAAATATT
Found at i:890548 original size:21 final size:20
Alignment explanation
Indices: 890508--890565 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
890498 TAAATAATAT
*
890508 TTTTTTAAAAAATATTGCACAC
1 TTTTTTAAAAAAT-TAGCAC-C
*
890530 TTTTTTACAAAATTAGCACC
1 TTTTTTAAAAAATTAGCACC
890550 TTTTCTTAAAAAATTA
1 TTTT-TTAAAAAATTA
890566 ACAATATATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.16
21 15 0.47
22 12 0.38
ACGTcount: A:0.40, C:0.14, G:0.03, T:0.43
Consensus pattern (20 bp):
TTTTTTAAAAAATTAGCACC
Found at i:891901 original size:16 final size:15
Alignment explanation
Indices: 891845--891901 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 15
891835 ATATTATTTA
* *
891845 ATTAAAATTTAATAA
1 ATTAAATTTTAATAT
891860 ATTAAATATTT-ATAT
1 ATTAAAT-TTTAATAT
891875 CATATAAATTTTAATAT
1 -AT-TAAATTTTAATAT
891892 ATTAATATTT
1 ATTAA-ATTT
891902 ATTAATATCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
15 12 0.34
16 14 0.40
17 9 0.26
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
ATTAAATTTTAATAT
Found at i:893319 original size:28 final size:28
Alignment explanation
Indices: 893265--893325 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
893255 TTTTATAAAA
*
893265 ATAATTATTATATTTATTTTTAAAAATT
1 ATAATTATTATATTTATTTATAAAAATT
*
893293 TTAATT-TT-TATTTATTTAATAATAAATT
1 ATAATTATTATATTTATTT-ATAA-AAATT
893321 ATAAT
1 ATAAT
893326 AACATAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
26 9 0.32
27 5 0.18
28 14 0.50
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (28 bp):
ATAATTATTATATTTATTTATAAAAATT
Found at i:893661 original size:20 final size:19
Alignment explanation
Indices: 893636--893695 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 19
893626 TAAACATATA
893636 TATTAATAAAAAATTATTTT
1 TATTAATAAAAAA-TATTTT
** *
893656 TATTAATTTAATATATTTT
1 TATTAATAAAAAATATTTT
*
893675 TAAATAATAAAAAAATATTTT
1 T-ATTAAT-AAAAAATATTTT
893696 CATGATTGAA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
19 7 0.23
20 15 0.48
21 9 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTAATAAAAAATATTTT
Found at i:894048 original size:19 final size:21
Alignment explanation
Indices: 894009--894048 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
893999 TAATTTATTG
894009 ATTTTAATTATGAAATATAAT
1 ATTTTAATTATGAAATATAAT
*
894030 ATTTT-ATTAT-AATTATAAT
1 ATTTTAATTATGAAATATAAT
894049 TTTAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 5 0.28
21 5 0.28
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (21 bp):
ATTTTAATTATGAAATATAAT
Found at i:896702 original size:15 final size:16
Alignment explanation
Indices: 896682--896713 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
896672 CTTTAAATAT
896682 AATAATAAT-ACAAAA
1 AATAATAATAACAAAA
896697 AATAATAATAACAAAA
1 AATAATAATAACAAAA
896713 A
1 A
896714 GCAAGCACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (16 bp):
AATAATAATAACAAAA
Found at i:897732 original size:19 final size:22
Alignment explanation
Indices: 897708--897756 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
897698 TAAAAATTAA
897708 TAAAATTT-TAT-TTTTAT-AT
1 TAAAATTTATATATTTTATAAT
897727 TAAAATTTATATATTTTATAAT
1 TAAAATTTATATATTTTATAAT
897749 T-AAATTTA
1 TAAAATTTA
897757 AATAAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 8 0.30
20 3 0.11
21 13 0.48
22 3 0.11
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TAAAATTTATATATTTTATAAT
Found at i:898478 original size:21 final size:20
Alignment explanation
Indices: 898439--898479 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
898429 GACACATTGG
*
898439 ATTAAAAAATAAATTTTTTA
1 ATTAAAAAATAAATATTTTA
*
898459 ATTAAAAAATACATAATTTTA
1 ATTAAAAAATAAAT-ATTTTA
898480 TAAGTGGATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
ATTAAAAAATAAATATTTTA
Found at i:904877 original size:11 final size:11
Alignment explanation
Indices: 904845--904923 Score: 87
Period size: 11 Copynumber: 7.5 Consensus size: 11
904835 ATTAAACACC
904845 ATAAAAA-AAT
1 ATAAAAATAAT
904855 -TAAAATATAAT
1 ATAAAA-ATAAT
904866 ATAAAAATAAT
1 ATAAAAATAAT
*
904877 ATAAATAT-AT
1 ATAAAAATAAT
904887 A-AAAAATAAT
1 ATAAAAATAAT
*
904897 -TAAAATATTAT
1 ATAAAA-ATAAT
904908 ATAAAAATAAT
1 ATAAAAATAAT
904919 ATAAA
1 ATAAA
904924 TATGTTTGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
9 10 0.17
10 10 0.17
11 28 0.48
12 10 0.17
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
ATAAAAATAAT
Found at i:904890 original size:31 final size:32
Alignment explanation
Indices: 904845--904926 Score: 89
Period size: 31 Copynumber: 2.6 Consensus size: 32
904835 ATTAAACACC
904845 ATAAAAA-AATTAAAATATAATATAAAA-ATAAT
1 ATAAAAATAA-TAAAATATAAT-TAAAATATAAT
* * *
904877 ATAAATAT-ATAAAAAATAATTAAAATATTAT
1 ATAAAAATAATAAAATATAATTAAAATATAAT
904908 ATAAAAATAATATAAATAT
1 ATAAAAATAATA-AAATAT
904927 GTTTGATTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
30 5 0.12
31 21 0.51
32 10 0.24
33 5 0.12
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (32 bp):
ATAAAAATAATAAAATATAATTAAAATATAAT
Found at i:904898 original size:42 final size:41
Alignment explanation
Indices: 904847--904926 Score: 142
Period size: 42 Copynumber: 1.9 Consensus size: 41
904837 TAAACACCAT
904847 AAAAAAATTAAAATATAATATAAAAATAATATAAATATATA
1 AAAAAAATTAAAATATAATATAAAAATAATATAAATATATA
*
904888 AAAAATAATTAAAATATTATATAAAAATAATATAAATAT
1 AAAAA-AATTAAAATATAATATAAAAATAATATAAATAT
904927 GTTTGATTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
41 5 0.14
42 32 0.86
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (41 bp):
AAAAAAATTAAAATATAATATAAAAATAATATAAATATATA
Found at i:905135 original size:3 final size:3
Alignment explanation
Indices: 905127--905155 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
905117 CATCTTTTTG
905127 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
905156 TTCCCTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:907340 original size:23 final size:23
Alignment explanation
Indices: 907314--907359 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
907304 TACTTAAACA
907314 TAAATATA-AAAATATAATTTTTT
1 TAAATATATAAAATA-AATTTTTT
907337 TAAATATATAAAATAAATTTTTT
1 TAAATATATAAAATAAATTTTTT
907360 AAAAATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
TAAATATATAAAATAAATTTTTT
Found at i:907950 original size:26 final size:26
Alignment explanation
Indices: 907921--907990 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 26
907911 TGAGGCAGTT
907921 AAATTTAAATTATTATTAAATAATAA
1 AAATTTAAATTATTATTAAATAATAA
* * * *
907947 AAATTTTAATTA-AATTTAATTATAA
1 AAATTTAAATTATTATTAAATAATAA
907972 AAATATATAAA-TATTATTA
1 AAAT-T-TAAATTATTATTA
907991 TAAAAATTAT
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
25 14 0.41
26 14 0.41
27 6 0.18
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
AAATTTAAATTATTATTAAATAATAA
Found at i:907982 original size:22 final size:22
Alignment explanation
Indices: 907957--908018 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
907947 AAATTTTAAT
907957 TAAATTTAATTATAAAAATATA
1 TAAATTTAATTATAAAAATATA
907979 TAAATATT-ATTATAAAAAT-TA
1 TAAAT-TTAATTATAAAAATATA
*
908000 T--ATTTAAATAATAAAAATA
1 TAAATTT-AATTATAAAAATA
908019 ATATGTTAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
18 2 0.06
19 2 0.06
20 10 0.29
21 3 0.09
22 16 0.46
23 2 0.06
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAATTTAATTATAAAAATATA
Found at i:908008 original size:25 final size:25
Alignment explanation
Indices: 907934--908009 Score: 79
Period size: 25 Copynumber: 3.1 Consensus size: 25
907924 TTTAAATTAT
* *
907934 TATTAAATAATAAAAATTTTAATTAAA
1 TATT-AATTATAAAAATTAT-ATTAAA
907961 T-TTAATTATAAAAA-TATA-TAAA
1 TATTAATTATAAAAATTATATTAAA
907983 TATT-ATTATAAAAATTATATTTAAA
1 TATTAATTATAAAAATTATA-TTAAA
908008 TA
1 TA
908010 ATAAAAATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
22 15 0.35
23 7 0.16
24 2 0.05
25 16 0.37
26 2 0.05
27 1 0.02
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
TATTAATTATAAAAATTATATTAAA
Found at i:908184 original size:15 final size:15
Alignment explanation
Indices: 908159--908195 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
908149 ATCCATTACC
*
908159 TAATCTATTATATAAG
1 TAAT-TATTATACAAG
908175 TAATTATTATACAAG
1 TAATTATTATACAAG
908190 TAATTA
1 TAATTA
908196 CTCAACTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.43
Consensus pattern (15 bp):
TAATTATTATACAAG
Found at i:912408 original size:22 final size:24
Alignment explanation
Indices: 912369--912417 Score: 75
Period size: 22 Copynumber: 2.1 Consensus size: 24
912359 TTGATTTAAA
912369 TTATTATTTATAAGTTAATAAATT
1 TTATTATTTATAAGTTAATAAATT
*
912393 TTATTATTTAT-A-TTAATATATT
1 TTATTATTTATAAGTTAATAAATT
912415 TTA
1 TTA
912418 ATAATTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 12 0.50
23 1 0.04
24 11 0.46
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (24 bp):
TTATTATTTATAAGTTAATAAATT
Found at i:914256 original size:22 final size:23
Alignment explanation
Indices: 914231--914277 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 23
914221 ATTTCATTCA
*
914231 TTATTAATAAAAATT-TTAAATT
1 TTATAAATAAAAATTATTAAATT
914253 TTATAAATAAAAATTAATTAAATT
1 TTATAAATAAAAATT-ATTAAATT
914277 T
1 T
914278 AAATTTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 14 0.64
24 8 0.36
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
TTATAAATAAAAATTATTAAATT
Found at i:914308 original size:14 final size:14
Alignment explanation
Indices: 914264--914312 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
914254 TATAAATAAA
*
914264 AATTAATTAAATTT
1 AATTTATTAAATTT
*
914278 AAATTTATTAAGTTT
1 -AATTTATTAAATTT
914293 AATTT-TTAAATATT
1 AATTTATTAAAT-TT
914307 AATTTA
1 AATTTA
914313 ATTTTTTACA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 5 0.17
14 12 0.41
15 12 0.41
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (14 bp):
AATTTATTAAATTT
Found at i:914681 original size:18 final size:18
Alignment explanation
Indices: 914660--914694 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
914650 ATAAATTTAA
914660 ATTAAATAATATAAAAAT
1 ATTAAATAATATAAAAAT
*
914678 ATTATATAATATAAAAA
1 ATTAAATAATATAAAAA
914695 ATTTATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
ATTAAATAATATAAAAAT
Found at i:914700 original size:18 final size:20
Alignment explanation
Indices: 914665--914711 Score: 66
Period size: 18 Copynumber: 2.5 Consensus size: 20
914655 TTTAAATTAA
914665 ATAATAT-AAAAATATTAT-
1 ATAATATAAAAAATATTATC
914683 ATAATATAAAAAAT-TTATC
1 ATAATATAAAAAATATTATC
914702 A-AATATAAAA
1 ATAATATAAAA
914712 GCTAGATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 20 0.74
19 7 0.26
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (20 bp):
ATAATATAAAAAATATTATC
Found at i:925513 original size:2 final size:2
Alignment explanation
Indices: 925506--925539 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
925496 CACAATTACA
925506 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
925540 GACAACTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:927062 original size:2 final size:2
Alignment explanation
Indices: 927055--927086 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
927045 GATGCAGTGA
927055 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
927087 TGTTAAGCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:927954 original size:38 final size:38
Alignment explanation
Indices: 927903--927978 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
927893 TTAATGTTTT
*
927903 AAATATGAATCCATCTATTAATTAGGTTCATTATTGTC
1 AAATATGAATCCATCTATTAATTAGGTTAATTATTGTC
927941 AAATAT-AATTCCATCTATTAATTAGGTTAATTATTGTC
1 AAATATGAA-TCCATCTATTAATTAGGTTAATTATTGTC
927979 GAAAGAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
37 2 0.06
38 34 0.94
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.43
Consensus pattern (38 bp):
AAATATGAATCCATCTATTAATTAGGTTAATTATTGTC
Found at i:935350 original size:20 final size:20
Alignment explanation
Indices: 935325--935365 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
935315 TATCTACGAT
935325 AAGAGACATAAAAAGAGAAA
1 AAGAGACATAAAAAGAGAAA
935345 AAGAGACATAAAAAGAGAAA
1 AAGAGACATAAAAAGAGAAA
935365 A
1 A
935366 GGACAATATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.71, C:0.05, G:0.20, T:0.05
Consensus pattern (20 bp):
AAGAGACATAAAAAGAGAAA
Found at i:937747 original size:21 final size:21
Alignment explanation
Indices: 937706--937757 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
937696 ATTTAATTTA
*
937706 TTAAAATAA-AATTTTAAATG
1 TTAAAAAAATAATTTTAAATG
*
937726 TTTAAAAAAATAATTTT-TATG
1 -TTAAAAAAATAATTTTAAATG
*
937747 TTAAATAAATA
1 TTAAAAAAATA
937758 TTAAATATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 10 0.37
21 11 0.41
22 6 0.22
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (21 bp):
TTAAAAAAATAATTTTAAATG
Found at i:938490 original size:28 final size:26
Alignment explanation
Indices: 938447--938502 Score: 67
Period size: 28 Copynumber: 2.1 Consensus size: 26
938437 GGTGCATCTT
*
938447 TTTACTTTAAACATAAAATTAAAATC
1 TTTACTTTAAACATAAAAATAAAATC
* *
938473 TTTACTATTAATATATAAAAATAAACTC
1 TTTACT-TTAA-ACATAAAAATAAAATC
938501 TT
1 TT
938503 AAAAATGTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.24
27 4 0.16
28 15 0.60
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (26 bp):
TTTACTTTAAACATAAAAATAAAATC
Found at i:940199 original size:2 final size:2
Alignment explanation
Indices: 940192--940217 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
940182 AAATTACATC
940192 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
940218 GCCCCTTCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:941180 original size:21 final size:22
Alignment explanation
Indices: 941153--941219 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
941143 CTCATATTAT
*
941153 TTTTTTAATTTTTTAAAATATA
1 TTTTTTAATATTTTAAAATATA
* *
941175 TTTTTAAATAATTTTAATATTATA
1 TTTTTTAAT-ATTTTAA-AATATA
941199 TTTTTTAA-ATTTTAAAATATA
1 TTTTTTAATATTTTAAAATATA
941220 AATAGCTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
21 5 0.13
22 15 0.39
23 6 0.16
24 12 0.32
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTTTTAATATTTTAAAATATA
Found at i:941287 original size:21 final size:22
Alignment explanation
Indices: 941234--941295 Score: 58
Period size: 25 Copynumber: 2.8 Consensus size: 22
941224 GCTTAACAAA
* *
941234 ATTTTTAATATTTATACTATAAT
1 ATTTTAAATATATATA-TATAAT
941257 ATTATATAAATATATATATAT-AT
1 ATT-T-TAAATATATATATATAAT
941280 ATTTTAAA-ATA-ATATA
1 ATTTTAAATATATATATA
941296 AATTACATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
19 5 0.14
20 3 0.09
21 4 0.11
22 1 0.03
23 8 0.23
24 4 0.11
25 10 0.29
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTTTAAATATATATATATAAT
Found at i:941298 original size:31 final size:29
Alignment explanation
Indices: 941246--941316 Score: 79
Period size: 31 Copynumber: 2.4 Consensus size: 29
941236 TTTTAATATT
* * * *
941246 TATACTATAATATTATATAAATATATATATA
1 TATATTATAAAATAATATAAAT-TACAT-TA
*
941277 TATATTTTAAAATAATATAAATTACATTA
1 TATATTATAAAATAATATAAATTACATTA
941306 TATATTATAAA
1 TATATTATAAA
941317 TTGAAAAACC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 12 0.35
30 4 0.12
31 18 0.53
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (29 bp):
TATATTATAAAATAATATAAATTACATTA
Found at i:942925 original size:27 final size:27
Alignment explanation
Indices: 942891--942949 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
942881 ATCAAAATTT
*
942891 ATATTTAATTTTTTAAATAAATA-AAAA
1 ATATTTAATTATTT-AATAAATATAAAA
*
942918 ATATTTAATTATTTATTAAATATAAAA
1 ATATTTAATTATTTAATAAATATAAAA
942945 A-ATTT
1 ATATTT
942950 TAACAATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 11 0.38
27 18 0.62
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (27 bp):
ATATTTAATTATTTAATAAATATAAAA
Found at i:942951 original size:27 final size:29
Alignment explanation
Indices: 942884--942952 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 29
942874 TTAATATATC
* *
942884 AAAATTTATATTTAATTTTTTAAATAAATAA
1 AAAATTT-TAATTAATTTATTAAAT-AATAA
942915 AAAATATTTAATT-ATTTATTAAAT-ATAA
1 AAAAT-TTTAATTAATTTATTAAATAATAA
942943 AAAATTTTAA
1 AAAATTTTAA
942953 CAATTAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
27 5 0.14
28 9 0.26
30 10 0.29
31 9 0.26
32 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (29 bp):
AAAATTTTAATTAATTTATTAAATAATAA
Found at i:946645 original size:17 final size:18
Alignment explanation
Indices: 946625--946665 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
946615 AAAATTAAAT
* *
946625 TATTTTT-ATATAGTTTA
1 TATTTTTAATATAATTGA
946642 TATTTTTAATATAATTGA
1 TATTTTTAATATAATTGA
946660 TATTTT
1 TATTTT
946666 AAAAAAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (18 bp):
TATTTTTAATATAATTGA
Done.