Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold110
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1159294
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
File 2 of 6
Found at i:133390 original size:61 final size:59
Alignment explanation
Indices: 133319--133454 Score: 175
Period size: 61 Copynumber: 2.3 Consensus size: 59
133309 CATCTTTCCC
* * * * * *
133319 TTTTAAGTCCATAACTCCGTGGTACCTTTTTCTTTTAAAGTCCACAGCTCCGTGGCA-CTCT
1 TTTTAAGTCCACAACTCCGTAGCACC--TTT-TTTTAAAGTCCACAGCACCATGGCATCTAT
*
133380 TTTTAAGTCCACAACTCCGTAGCACCTTTTTTTAAAGTCCATAGCACCATGGCATCTAT
1 TTTTAAGTCCACAACTCCGTAGCACCTTTTTTTAAAGTCCACAGCACCATGGCATCTAT
133439 TTTTAAGTCCACAACT
1 TTTTAAGTCCACAACT
133455 TTATGGTATC
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
58 22 0.33
59 22 0.33
61 23 0.34
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.36
Consensus pattern (59 bp):
TTTTAAGTCCACAACTCCGTAGCACCTTTTTTTAAAGTCCACAGCACCATGGCATCTAT
Found at i:133442 original size:93 final size:91
Alignment explanation
Indices: 133209--133442 Score: 224
Period size: 93 Copynumber: 2.6 Consensus size: 91
133199 TTGTAAGCCT
* * * ** *
133209 ACAACTCCGTGGCACC--T-TTTTAAGCCCATAACTCTGTGGCACCTTTTTCTTTTAAAGTCCAC
1 ACAACTCCGTAGCACCTTTCTTTTAAGTCCATAACACCATGGCACATTTTTCTTTTAAAGTCCAC
*
133271 AACTCTATGGCACCCTTTTTAACTCC
66 AACTCCATGGCACCCTTTTTAACTCC
** * * * * *
133297 ACAACTTTGTAGCATCTTTCCCTTTTAAGTCCATAACTCCGTGGTACCTTTTTCTTTTAAAGTCC
1 ACAACTCCGTAGCACCTTT--CTTTTAAGTCCATAACACCATGGCACATTTTTCTTTTAAAGTCC
* * * *
133362 ACAGCTCCGTGGCACTCTTTTTAAGTCC
64 ACAACTCCATGGCACCCTTTTTAACTCC
*
133390 ACAACTCCGTAGCACCTTT-TTTTAAAGTCCATAGCACCATGGCATCTATTTTT
1 ACAACTCCGTAGCACCTTTCTTTT-AAGTCCATAACACCATGGCA-C-ATTTTT
133443 AAGTCCACAA
Statistics
Matches: 118, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
88 12 0.10
90 5 0.04
91 16 0.14
92 1 0.01
93 84 0.71
ACGTcount: A:0.23, C:0.29, G:0.12, T:0.36
Consensus pattern (91 bp):
ACAACTCCGTAGCACCTTTCTTTTAAGTCCATAACACCATGGCACATTTTTCTTTTAAAGTCCAC
AACTCCATGGCACCCTTTTTAACTCC
Found at i:133470 original size:58 final size:58
Alignment explanation
Indices: 133351--133506 Score: 174
Period size: 58 Copynumber: 2.7 Consensus size: 58
133341 TACCTTTTTC
* * *
133351 TTTTAAAGTCCACAGCTCCGTGGCA-CTCTTTTTAAGTCCACAACTCCGTAGCACCTTT
1 TTTTAAAGTCCATAGCTCCATGGCATCTCTTTTTAAGTCCACAACTCCATAGCACC-TT
* * ** * *
133409 TTTTAAAGTCCATAGCACCATGGCATCTATTTTTAAGTCCACAACTTTATGGTATCCTT
1 TTTTAAAGTCCATAGCTCCATGGCATCTCTTTTTAAGTCCACAACTCCATAGCA-CCTT
* *
133468 TTTT-AAGTCCGTAACTCCATGGCATC-CTTTTTAAGTCCA
1 TTTTAAAGTCCATAGCTCCATGGCATCTCTTTTTAAGTCCA
133507 TAAATTTGTG
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
57 12 0.14
58 41 0.49
59 28 0.34
60 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (58 bp):
TTTTAAAGTCCATAGCTCCATGGCATCTCTTTTTAAGTCCACAACTCCATAGCACCTT
Found at i:133623 original size:31 final size:32
Alignment explanation
Indices: 133558--133685 Score: 118
Period size: 31 Copynumber: 4.0 Consensus size: 32
133548 CCCTTTTTTG
* * * *
133558 AAGCCTACACAAGTCGGTGACAACCCTT-TCA
1 AAGCCCACACAAGTCGGTGGCAACTCTTCTAA
*
133589 AAGCCCATACAAGTCGGTGGCAACTCTTCT-A
1 AAGCCCACACAAGTCGGTGGCAACTCTTCTAA
* * * *
133620 AAGCTCACATAAGTTGGTGGTAAC-CTTCTTAA
1 AAGCCCACACAAGTCGGTGGCAACTCTTC-TAA
* *
133652 AAGCCCACAAAAGTCGGTGGCATCTCATTCTAA
1 AAGCCCACACAAGTCGGTGGCAACTC-TTCTAA
133685 A
1 A
133686 CCTAATATCG
Statistics
Matches: 78, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
30 4 0.05
31 45 0.58
32 21 0.27
33 5 0.06
34 3 0.04
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (32 bp):
AAGCCCACACAAGTCGGTGGCAACTCTTCTAA
Found at i:138323 original size:13 final size:13
Alignment explanation
Indices: 138305--138330 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
138295 ACATTAAAAT
138305 TATATCGATATAA
1 TATATCGATATAA
138318 TATATCGATATAA
1 TATATCGATATAA
138331 ATTTGATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
TATATCGATATAA
Found at i:139872 original size:21 final size:21
Alignment explanation
Indices: 139806--139865 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
139796 TTTTTATTAG
139806 CTAACTCA-TCATTTTCATTTT
1 CTAACTCATTCATTTTC-TTTT
*
139827 CCAACTCATTTC-TTTTCTTTT
1 CTAACTCA-TTCATTTTCTTTT
139848 CTAACTCATTCATTTTCT
1 CTAACTCATTCATTTTCT
139866 CCTCTAATTC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 3 0.09
21 24 0.71
22 5 0.15
23 2 0.06
ACGTcount: A:0.20, C:0.27, G:0.00, T:0.53
Consensus pattern (21 bp):
CTAACTCATTCATTTTCTTTT
Found at i:141961 original size:19 final size:20
Alignment explanation
Indices: 141918--141961 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
141908 TTGTTAGACT
**
141918 CAATGTATCGATACTATTCA
1 CAATGTATCGATACTATGAA
141938 CAATGTATCGATAC-ATGAA
1 CAATGTATCGATACTATGAA
141957 CAATG
1 CAATG
141962 ATAAACAGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.30
Consensus pattern (20 bp):
CAATGTATCGATACTATGAA
Found at i:141976 original size:52 final size:56
Alignment explanation
Indices: 141920--142060 Score: 182
Period size: 52 Copynumber: 2.5 Consensus size: 56
141910 GTTAGACTCA
*
141920 ATGTATCGATACTATTCACAATGTATCGATACATGAACA-ATG-AT-A-AACAGTG
1 ATGTATCGATACTATTCACAATGTATCCATACATGAACAGATGAATAAGAACAGTG
141972 ATGTATCGATACTATTCACAATGTATCCATACATGAACAGTGATGAATAGACATGAACAGTG
1 ATGTATCGATACTATTCACAATGTATCCATACATGAACA--GATGAAT--A-A-GAACAGTG
*
142034 ATGTATCGATACTATTCATAATGTATC
1 ATGTATCGATACTATTCACAATGTATC
142061 AATAAAGTCC
Statistics
Matches: 77, Mismatches: 2, Indels: 10
0.87 0.02 0.11
Matches are distributed among these distances:
52 38 0.49
55 3 0.04
56 2 0.03
60 1 0.01
62 33 0.43
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (56 bp):
ATGTATCGATACTATTCACAATGTATCCATACATGAACAGATGAATAAGAACAGTG
Found at i:143184 original size:22 final size:22
Alignment explanation
Indices: 143159--143209 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
143149 AAAAATCAAA
*
143159 AAAACAAAAGCAA-AAGAAAAAT
1 AAAA-AAAAGCAACAACAAAAAT
* *
143181 AAAAAAAGGGAACAACAAAAAT
1 AAAAAAAAGCAACAACAAAAAT
143203 AAAAAAA
1 AAAAAAA
143210 TAAGGCCATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.78, C:0.08, G:0.10, T:0.04
Consensus pattern (22 bp):
AAAAAAAAGCAACAACAAAAAT
Found at i:144435 original size:31 final size:30
Alignment explanation
Indices: 144397--144459 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
144387 ATCTTTCTCC
* *
144397 TTCTTCAAAATCCACGATTTAGTGGCATCTT
1 TTCTTCAAAATCCAC-ACTCAGTGGCATCTT
*
144428 TTCTTCAAAGTCCACACTCAGTGGCATCTT
1 TTCTTCAAAATCCACACTCAGTGGCATCTT
144458 TT
1 TT
144460 TCTTTTAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 15 0.52
31 14 0.48
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (30 bp):
TTCTTCAAAATCCACACTCAGTGGCATCTT
Found at i:144453 original size:30 final size:32
Alignment explanation
Indices: 144397--144486 Score: 103
Period size: 31 Copynumber: 2.8 Consensus size: 32
144387 ATCTTTCTCC
* * *
144397 TTCTTCAAAATCCACGATTTAGTGGCATC-TT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCTTT
144428 TTCTTCAAAGTCCAC-ACTCAGTGGCATCTTT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCTTT
* * *
144459 TTCTTTTAAAGTCCATGACTCCGTGGCA
1 TTC-TTCAAAGTCCACGACTCAGTGGCA
144487 CATTTTCCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
30 11 0.22
31 19 0.38
32 10 0.20
33 10 0.20
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (32 bp):
TTCTTCAAAGTCCACGACTCAGTGGCATCTTT
Found at i:144566 original size:27 final size:28
Alignment explanation
Indices: 144525--144577 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
144515 TGGGACATTT
144525 TTCTTTTTATGTCCACAACTCTGTGGCA
1 TTCTTTTTATGTCCACAACTCTGTGGCA
* *
144553 TTCTTTTTA-GTCCATAACTTTGTGG
1 TTCTTTTTATGTCCACAACTCTGTGG
144578 AACTTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (28 bp):
TTCTTTTTATGTCCACAACTCTGTGGCA
Found at i:144586 original size:27 final size:28
Alignment explanation
Indices: 144525--144588 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 28
144515 TGGGACATTT
*
144525 TTCTTTTTATGTCCACAACTCTGTGGCA
1 TTCTTTTTATGTCCACAACTCTGTGGAA
* *
144553 TTCTTTTTA-GTCCATAACTTTGTGGAA
1 TTCTTTTTATGTCCACAACTCTGTGGAA
*
144580 CT-TTTTTAT
1 TTCTTTTTAT
144589 TTTAAAGTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
26 6 0.19
27 16 0.52
28 9 0.29
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.50
Consensus pattern (28 bp):
TTCTTTTTATGTCCACAACTCTGTGGAA
Found at i:144795 original size:28 final size:28
Alignment explanation
Indices: 144752--145326 Score: 256
Period size: 28 Copynumber: 19.2 Consensus size: 28
144742 ACACTTTTTT
* * *
144752 CTTTTAAAGTCTACAACTCCGTAGCACC
1 CTTTTTAAGTCCACAACTCCGTGGCACC
* ** *
144780 CTTTTTAAGTCCACAATTTTGTGGTACC
1 CTTTTTAAGTCCACAACTCCGTGGCACC
*
144808 TTTTTTCTTTTTAAGTCCACAACTCCGTGGCATCTTTTT
1 ------CTTTTTAAGTCCACAACTCCGTGGCA-C----C
* * *
144847 CTTTTAAAGTTCACAACTTCGTGGCA-C
1 CTTTTTAAGTCCACAACTCCGTGGCACC
* **
144874 CTTTTTAAGTCCACAACTCCGTAGCATTTTTTT
1 CTTTTTAAGTCCACAACTCCGTGGCA-----CC
* * ** * *
144907 CTTTTAAAATCCATGACTTCATGGCA-C
1 CTTTTTAAGTCCACAACTCCGTGGCACC
* * * *
144934 TTTTTTATGTCCACAACTCTGCGGCA-C
1 CTTTTTAAGTCCACAACTCCGTGGCACC
* *
144961 CTTTTTAAGTCCACAACTCCATGGCACTTA
1 CTTTTTAAGTCCACAACTCCGTGGCAC--C
* * *
144991 TTTTTTAAAGTCAACAACTCTGTGGCACC
1 CTTTTT-AAGTCCACAACTCCGTGGCACC
* *
145020 TTTTTTAAGTCCACAACTCCATGGCACC
1 CTTTTTAAGTCCACAACTCCGTGGCACC
*
145048 CTTTTTCTTGTTAAGTCCACAACTCTGTGGCATCTCAC
1 C----T-TT-TTAAGTCCACAACTCCGTGGCA---C-C
* **
145086 CTTTTTAAGTCCAAAACTTTGTGGCACC
1 CTTTTTAAGTCCACAACTCCGTGGCACC
* * * *
145114 TTTTTCTTTTAATGTCCACAGCTCTGTGGCACT
1 ---CT-TTTTAA-GTCCACAACTCCGTGGCACC
*
145147 CTTTTTAAGTCCACAACTCCGTGCCACC
1 CTTTTTAAGTCCACAACTCCGTGGCACC
* * ** * *
145175 TTTTTTTAAAATCCACAACTGTGCGGCATCT
1 -CTTTTT-AAGTCCACAACTCCGTGGCA-CC
* * **
145206 TTTTTTAAGTCCACGACTTTGTGGCATCC
1 CTTTTTAAGTCCACAACTCCGTGGCA-CC
* * *
145235 TTTTTTAAGTCCACAACACCATGGCACC
1 CTTTTTAAGTCCACAACTCCGTGGCACC
* *
145263 CTTCTAAAGTCCACCCAACTCCGTGGCACC
1 CTTTTTAAGTCCA--CAACTCCGTGGCACC
* *
145293 CTTTTAAAGTCCACAACTCTGTGGCACC
1 CTTTTTAAGTCCACAACTCCGTGGCACC
145321 CTTTTT
1 CTTTTT
145327 TGAAGCCCAC
Statistics
Matches: 413, Mismatches: 93, Indels: 82
0.70 0.16 0.14
Matches are distributed among these distances:
27 60 0.15
28 88 0.21
29 57 0.14
30 52 0.13
31 20 0.05
32 27 0.07
33 62 0.15
34 43 0.10
35 1 0.00
37 1 0.00
38 2 0.00
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.37
Consensus pattern (28 bp):
CTTTTTAAGTCCACAACTCCGTGGCACC
Found at i:144886 original size:60 final size:60
Alignment explanation
Indices: 144814--144966 Score: 198
Period size: 60 Copynumber: 2.5 Consensus size: 60
144804 TACCTTTTTT
* * *
144814 CTTTTTAAGTCCACAACTCCGTGGCATCTTTTTCTTTTAAAGTTCACAACTTCGTGGCAC
1 CTTTTTAAGTCCACAACTCCGTGGCATCTTTTTCTTTTAAAATCCACAACTTCATGGCAC
* * **
144874 CTTTTTAAGTCCACAACTCCGTAGCATTTTTTTCTTTTAAAATCCATGACTTCATGGCAC
1 CTTTTTAAGTCCACAACTCCGTGGCATCTTTTTCTTTTAAAATCCACAACTTCATGGCAC
* * * * *
144934 TTTTTTATGTCCACAACTCTGCGGCACCTTTTT
1 CTTTTTAAGTCCACAACTCCGTGGCATCTTTTT
144967 AAGTCCACAA
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
60 79 1.00
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.41
Consensus pattern (60 bp):
CTTTTTAAGTCCACAACTCCGTGGCATCTTTTTCTTTTAAAATCCACAACTTCATGGCAC
Found at i:144911 original size:33 final size:33
Alignment explanation
Indices: 144435--145179 Score: 446
Period size: 33 Copynumber: 23.8 Consensus size: 33
144425 CTTTTCTTCA
* * *
144435 AAGTCCAC-ACTCAGTGGCATCTTTTTCTTTTA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
** * * *
144467 AAGTCCATGACTCCGTGGCACATTTTCCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* * * *
144500 AAGTCCATAACTCCATGGGACATTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
144533 ATGTCCACAACTCTGTGGCA-----TTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* ** * * * *
144561 -AGTCCATAACTTTGTGGAACTTTTTTATTTTA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
*
144593 AAGTCCACAACTTCGTGGCACCTTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACC-TTTTTCTTTTT
* * *
144627 AAGTCCACAACTCCATAGCACCTTTTTCTTTTA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* **
144660 AAGTCCACAACTCCGTAGCACCCCTTT-TTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* **
144692 AAGTCCACAACTCCGTGGCATCTTTTTCTTTCA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* * * * * *
144725 AAGTCTACGACTCTGTGACACTTTTTTCTTTTA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
144758 AAGTCTACAACTCCGTAGCACC-----CTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* ** *
144786 AAGTCCACAATTTTGTGGTACCTTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACC-TTTTTCTTTTT
* *
144820 AAGTCCACAACTCCGTGGCATCTTTTTCTTTTA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
144853 AAGTTCACAACTTCGTGGCA-C-----CTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* ** *
144880 AAGTCCACAACTCCGTAGCATTTTTTTCTTTTA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* ** * *
144913 AAATCCATGACTTCATGGCA-C----T-TTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
144940 ATGTCCACAACTCTGCGGCA-C-----CTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
144967 AAGTCCACAACTCCATGGCA-CTTATT-TTTTA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
144998 AAGTCAACAACTCTGTGGCACC----T-TTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
145026 AAGTCCACAACTCCATGGCACCCTTTTTCTTGTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTTCTTTTT
* * ***
145060 AAGTCCACAACTCTGTGGCATC-TCACCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* **
145092 AAGTCCAAAACTTTGTGGCACCTTTTTC-TTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
145124 AATGTCCACAGCTCTGTGGCA-C----TCTTTTT
1 AA-GTCCACAACTCCGTGGCACCTTTTTCTTTTT
*
145153 AAGTCCACAACTCCGTGCCACCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT
145180 TTAAAATCCA
Statistics
Matches: 547, Mismatches: 124, Indels: 83
0.73 0.16 0.11
Matches are distributed among these distances:
27 76 0.14
28 69 0.13
29 9 0.02
31 21 0.04
32 74 0.14
33 225 0.41
34 73 0.13
ACGTcount: A:0.22, C:0.27, G:0.12, T:0.39
Consensus pattern (33 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
Found at i:145366 original size:31 final size:31
Alignment explanation
Indices: 145329--145410 Score: 121
Period size: 31 Copynumber: 2.6 Consensus size: 31
145319 CCCTTTTTTG
145329 AAGCCCACACAAGTCGGTGGTAACCCCTTC-A
1 AAGCCCACACAAGTCGGTGGTAA-CCCTTCTA
* * *
145360 AGGCCCACACAAGTCGATTGTAACCCTTCTA
1 AAGCCCACACAAGTCGGTGGTAACCCTTCTA
145391 AAGCCCACACAAGTCGGTGG
1 AAGCCCACACAAGTCGGTGG
145411 CATCTCGTTC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
30 6 0.14
31 38 0.86
ACGTcount: A:0.29, C:0.33, G:0.21, T:0.17
Consensus pattern (31 bp):
AAGCCCACACAAGTCGGTGGTAACCCTTCTA
Found at i:145551 original size:52 final size:51
Alignment explanation
Indices: 145470--145629 Score: 146
Period size: 52 Copynumber: 3.1 Consensus size: 51
145460 TATTTTTTTA
* * *
145470 TTTAAGTCC-AATATCGCTAGCCTTGAATTAGCATATTGGCATCTT-T-ATC
1 TTTAAG-CCTAATATAGCTCGCTTTGAATTAGCATATTGGCATCTTCTCATC
* * * *
145519 ATTCCTAAGCCTAATGTAGCTGGCTTTGAATTAGTACATTGGCATTCTTCTCATC
1 -TT--TAAGCCTAATATAGCTCGCTTTGAATTAGCATATTGGCA-TCTTCTCATC
* * * *
145574 TTTAAGTCTAATATCGCTCGCTATGAATTAGCATATTGGCATTCTTCTCACC
1 TTTAAGCCTAATATAGCTCGCTTTGAATTAGCATATTGGCA-TCTTCTCATC
145626 TTTA
1 TTTA
145630 TCATTTTTTA
Statistics
Matches: 90, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
50 2 0.02
51 2 0.02
52 76 0.84
53 4 0.04
54 3 0.03
55 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.39
Consensus pattern (51 bp):
TTTAAGCCTAATATAGCTCGCTTTGAATTAGCATATTGGCATCTTCTCATC
Found at i:145763 original size:52 final size:52
Alignment explanation
Indices: 145683--145816 Score: 178
Period size: 52 Copynumber: 2.6 Consensus size: 52
145673 ATTTATCATT
* * **
145683 TTTAAGCCTAATGTTGCTGGCCTAGAATCAGCACATTGGCATGCTTCACATC
1 TTTAAGCCTAATATTGCTGGCCTTGAATCAGCACATTGGCACACTTCACATC
* * **
145735 TTTAAGCCCAATATTGCTGGCCTTGAATCAGCACATTGGCACATTTGTCATC
1 TTTAAGCCTAATATTGCTGGCCTTGAATCAGCACATTGGCACACTTCACATC
* *
145787 TTTAAGCCTAATATGGCTAGCCTTGAATCA
1 TTTAAGCCTAATATTGCTGGCCTTGAATCA
145817 ACATACTAGC
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (52 bp):
TTTAAGCCTAATATTGCTGGCCTTGAATCAGCACATTGGCACACTTCACATC
Found at i:146634 original size:20 final size:20
Alignment explanation
Indices: 146581--146634 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
146571 CACAATAATT
*
146581 TGTATCGATACAATAAGGCAA
1 TGTATAGATAC-ATAAGGCAA
* *
146602 TGTATTGAGACATAAGTG-AA
1 TGTATAGATACATAAG-GCAA
146622 TGTATAGATACAT
1 TGTATAGATACAT
146635 GCCTAAAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (20 bp):
TGTATAGATACATAAGGCAA
Found at i:146707 original size:20 final size:20
Alignment explanation
Indices: 146682--146755 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 20
146672 GGAAGGAAAT
*
146682 TGTATCGATACATTTTTAAA
1 TGTATCGATACATTTATAAA
* *
146702 TGTATCGATACA-TAAGAAA
1 TGTATCGATACATTTATAAA
* * *
146721 TTGTATCGATACATTTCTCAT
1 -TGTATCGATACATTTATAAA
146742 TGTATCGATACATT
1 TGTATCGATACATT
146756 ATGGGTTTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 4 0.09
20 38 0.86
21 2 0.05
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATTTATAAA
Found at i:146728 original size:40 final size:40
Alignment explanation
Indices: 146677--146754 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
146667 ATTTTGGAAG
*
146677 GAAATTGTATCGATACATTTTTAAATGTATCGATACATAA
1 GAAATTGTATCGATACATTTCTAAATGTATCGATACATAA
* *
146717 GAAATTGTATCGATACATTTCTCATTGTATCGATACAT
1 GAAATTGTATCGATACATTTCTAAATGTATCGATACAT
146755 TATGGGTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (40 bp):
GAAATTGTATCGATACATTTCTAAATGTATCGATACATAA
Found at i:147350 original size:13 final size:13
Alignment explanation
Indices: 147332--147356 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
147322 AACTCACTCA
147332 GTATCGATACATT
1 GTATCGATACATT
147345 GTATCGATACAT
1 GTATCGATACAT
147357 ACTTGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:147389 original size:20 final size:21
Alignment explanation
Indices: 147342--147395 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
147332 GTATCGATAC
*
147342 ATTGTATCGATACATACTTGA
1 ATTGTATCGATACATACGTGA
*
147363 ATTGTATCGATACATAGGT-A
1 ATTGTATCGATACATACGTGA
*
147383 TTTGTATCGATAC
1 ATTGTATCGATAC
147396 GTTGAGCCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 13 0.43
21 17 0.57
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (21 bp):
ATTGTATCGATACATACGTGA
Found at i:155443 original size:20 final size:19
Alignment explanation
Indices: 155420--155489 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 19
155410 TAATTTTTTA
155420 AAGGGGAGAAAAATTCTATT
1 AAGGGGAGAAAAATT-TATT
155440 AAGGGGGAGTACTAAATATTTCATT
1 AA-GGGGAG-A--AAA-ATTT-ATT
155465 AAGGGGAGAAAAATTTTATT
1 AAGGGGAGAAAAA-TTTATT
155485 AAGGG
1 AAGGG
155490 AGAGGATTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
20 11 0.26
21 12 0.28
22 1 0.02
23 1 0.02
24 10 0.23
25 8 0.19
ACGTcount: A:0.41, C:0.04, G:0.27, T:0.27
Consensus pattern (19 bp):
AAGGGGAGAAAAATTTATT
Found at i:156275 original size:21 final size:20
Alignment explanation
Indices: 156249--156304 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
156239 GTATCAATAC
*
156249 ATTGTATTGATACATACTTGA
1 ATTGTATTGATACATACAT-A
* * *
156270 ATTGTATCGACACATAGATA
1 ATTGTATTGATACATACATA
*
156290 TTTGTATTGATACAT
1 ATTGTATTGATACAT
156305 TAAGCCTAAT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (20 bp):
ATTGTATTGATACATACATA
Found at i:160702 original size:20 final size:21
Alignment explanation
Indices: 160673--160712 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
160663 GAGAGGTTGG
*
160673 ACATGTTAT-AAATGCATGAA
1 ACATGGTATAAAATGCATGAA
160693 ACATGGTATAAAATGCATGA
1 ACATGGTATAAAATGCATGA
160713 TCAAAGGCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.28
Consensus pattern (21 bp):
ACATGGTATAAAATGCATGAA
Found at i:163048 original size:74 final size:75
Alignment explanation
Indices: 162921--163065 Score: 186
Period size: 74 Copynumber: 1.9 Consensus size: 75
162911 CTCGGAAGAT
* * * * *
162921 AAGGTTGGAGTATCCTTGTGGGTAACAAATAATTTTGACAAAAGAGGAGTTCAAATGTTGATAAA
1 AAGGCTGGAGTATCCTTATGGATAACAAATAATTTTGACAAAAGAGGAGTTCAAATCTAGATAAA
162986 TTTTGAACAG
66 TTTTGAACAG
* ** *
162996 AAGGCTGGAGTGTCCTTATGGATAACAAA-AATTTTGGA-AAGGGAGGAGTTCAAATCTAGATAG
1 AAGGCTGGAGTATCCTTATGGATAACAAATAATTTT-GACAAAAGAGGAGTTCAAATCTAGATAA
163059 ATTTTGA
65 ATTTTGA
163066 TGAGCGGGGT
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
74 33 0.55
75 27 0.45
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.30
Consensus pattern (75 bp):
AAGGCTGGAGTATCCTTATGGATAACAAATAATTTTGACAAAAGAGGAGTTCAAATCTAGATAAA
TTTTGAACAG
Found at i:165699 original size:19 final size:20
Alignment explanation
Indices: 165656--165708 Score: 90
Period size: 19 Copynumber: 2.7 Consensus size: 20
165646 ATTTCAACGA
165656 TTTGTATCGATACATAAAGT
1 TTTGTATCGATACATAAAGT
*
165676 ATTGTATCGATACAT-AAGT
1 TTTGTATCGATACATAAAGT
165695 TTTGTATCGATACA
1 TTTGTATCGATACA
165709 ATGTAAGCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (20 bp):
TTTGTATCGATACATAAAGT
Found at i:165769 original size:13 final size:13
Alignment explanation
Indices: 165751--165775 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
165741 ATTACTCAAA
165751 TGTATCGATACAT
1 TGTATCGATACAT
165764 TGTATCGATACA
1 TGTATCGATACA
165776 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:165825 original size:52 final size:52
Alignment explanation
Indices: 165784--165912 Score: 249
Period size: 52 Copynumber: 2.5 Consensus size: 52
165774 CACTGATCTT
165784 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
165836 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
165888 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
165913 TCATATTTCG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:172812 original size:9 final size:9
Alignment explanation
Indices: 172798--172832 Score: 61
Period size: 9 Copynumber: 3.8 Consensus size: 9
172788 AAGTAAACAC
172798 AAAAACAAA
1 AAAAACAAA
172807 AAAAACAAA
1 AAAAACAAA
172816 ACAAAACAAA
1 A-AAAACAAA
172826 AAAAACA
1 AAAAACA
172833 CAGAAAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAACAAA
Found at i:172816 original size:5 final size:5
Alignment explanation
Indices: 172799--172832 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
172789 AGTAAACACA
172799 AAAAC AAAA- AAAAC AAAAC AAAAC AAAA- AAAAC A
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC A
172833 CAGAAAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 8 0.30
5 19 0.70
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:174152 original size:30 final size:30
Alignment explanation
Indices: 174051--174265 Score: 191
Period size: 30 Copynumber: 6.9 Consensus size: 30
174041 TTCAAATACC
* * *
174051 TTCTTAAAGTCTACGACTCAGTGGCAATCTC
1 TTCTTAAAGTCCACGACTTAGTGGC-ATCTT
* * * *
174082 TTCTCAAAGCCCATGACTCAGTGGCATCTTT
1 TTCTTAAAGTCCACGACTTAGTGGCATC-TT
174113 CCTTCTTAAAGTCCACGACTTAGTGGCATCTT
1 --TTCTTAAAGTCCACGACTTAGTGGCATCTT
* *
174145 GTCTTAAAGTCCAC-AATTCAGTGGCATCTCT
1 TTCTTAAAGTCCACGACTT-AGTGGCATCT-T
* *
174176 TTC-CAAAGTCCACGACTTAGTGGCATTTTT
1 TTCTTAAAGTCCACGACTTAGTGGCA-TCTT
*
174206 CCTTCTTAAAGTCCACGACATAGTGGCATCTT
1 --TTCTTAAAGTCCACGACTTAGTGGCATCTT
** * *
174238 GCCTCAAAGTCCACGACTCAGTGGCATC
1 TTCTTAAAGTCCACGACTTAGTGGCATC
174266 AAAGTCCACG
Statistics
Matches: 151, Mismatches: 23, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
29 3 0.02
30 66 0.44
31 30 0.20
32 8 0.05
33 44 0.29
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (30 bp):
TTCTTAAAGTCCACGACTTAGTGGCATCTT
Found at i:174212 original size:93 final size:93
Alignment explanation
Indices: 174052--174265 Score: 313
Period size: 93 Copynumber: 2.3 Consensus size: 93
174042 TCAAATACCT
* *
174052 TCTTAAAGTCTACGACTCAGTGGCAATCTCTTCTCAAAGCCCATGACTCAGTGGCATCTTTCCTT
1 TCTTAAAGTCCACGACTCAGTGGC-ATCTCTTCTCAAAGCCCACGACTCAGTGGCATCTTTCCTT
*
174117 CTTAAAGTCCACGACTTAGTGGCATCTTG
65 CTTAAAGTCCACGACATAGTGGCATCTTG
* * * * *
174146 TCTTAAAGTCCACAATTCAGTGGCATCTCTT-TCCAAAGTCCACGACTTAGTGGCATTTTTCCTT
1 TCTTAAAGTCCACGACTCAGTGGCATCTCTTCT-CAAAGCCCACGACTCAGTGGCATCTTTCCTT
174210 CTTAAAGTCCACGACATAGTGGCATCTTG
65 CTTAAAGTCCACGACATAGTGGCATCTTG
* *
174239 CCTCAAAGTCCACGACTCAGTGGCATC
1 TCTTAAAGTCCACGACTCAGTGGCATC
174266 AAAGTCCACG
Statistics
Matches: 107, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
92 1 0.01
93 85 0.79
94 21 0.20
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (93 bp):
TCTTAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGCCCACGACTCAGTGGCATCTTTCCTTC
TTAAAGTCCACGACATAGTGGCATCTTG
Found at i:174217 original size:63 final size:61
Alignment explanation
Indices: 174056--174264 Score: 178
Period size: 63 Copynumber: 3.4 Consensus size: 61
174046 ATACCTTCTT
* * * * * * *
174056 AAAGTCTACGACTCAGTGGCAATCTCT-TCTCAAAGCCCATGAC-TCAGTGGCATCTTTCCTTC
1 AAAGTCCACGACTTAGTGGCATTCT-TGTCTTAAAGTCCACGACAT-AGTGGCATCTTGCC-TC
**
174118 TTAAAGTCCACGACTTAGTGGCA-TCTTGTCTTAAAGTCCAC-A-ATTCAGTGGCATCTCTTTC-
1 --AAAGTCCACGACTTAGTGGCATTCTTGTCTTAAAGTCCACGACA-T-AGTGGCATCT-TGCCT
174179 C
61 C
* *
174180 AAAGTCCACGACTTAGTGGCATTTTTCCTTCTTAAAGTCCACGACATAGTGGCATCTTGCCTC
1 AAAGTCCACGACTTAGTGGCATTCTT--GTCTTAAAGTCCACGACATAGTGGCATCTTGCCTC
*
174243 AAAGTCCACGACTCAGTGGCAT
1 AAAGTCCACGACTTAGTGGCAT
174265 CAAAGTCCAC
Statistics
Matches: 124, Mismatches: 11, Indels: 21
0.79 0.07 0.13
Matches are distributed among these distances:
60 21 0.17
61 3 0.02
62 5 0.04
63 70 0.56
64 24 0.19
65 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (61 bp):
AAAGTCCACGACTTAGTGGCATTCTTGTCTTAAAGTCCACGACATAGTGGCATCTTGCCTC
Found at i:174271 original size:23 final size:23
Alignment explanation
Indices: 174241--174286 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
174231 GCATCTTGCC
174241 TCAAAGTCCACGACTCAGTGGCA
1 TCAAAGTCCACGACTCAGTGGCA
*
174264 TCAAAGTCCACGACTCCGTGGCA
1 TCAAAGTCCACGACTCAGTGGCA
174287 CCTTCTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.33, G:0.22, T:0.17
Consensus pattern (23 bp):
TCAAAGTCCACGACTCAGTGGCA
Found at i:174375 original size:34 final size:33
Alignment explanation
Indices: 174267--174521 Score: 194
Period size: 34 Copynumber: 7.8 Consensus size: 33
174257 AGTGGCATCA
* * *
174267 AAGTCCACGACTCCGTGGCAC-CTTCTT--TTCA
1 AAGTCCACAACT-CGTGGCACTCTTTTTCCTTCT
*
174298 AAGCCCACAACTCTGTGGCA-TCTTTTTCCTTCTT
1 AAGTCCACAACTC-GTGGCACTCTTTTTCCTTC-T
* *
174332 AAAGCCCACAACTACGTGGCACTTTTTTTCCTTCT
1 -AAGTCCACAACT-CGTGGCACTCTTTTTCCTTCT
**
174367 AAGTCCACAACTCTGTGGCAC-C-----GGTT-T
1 AAGTCCACAACTC-GTGGCACTCTTTTTCCTTCT
*
174394 AAG-CCTACAACTCCATGGCACTCTTTTTCCTTCT
1 AAGTCC-ACAACT-CGTGGCACTCTTTTTCCTTCT
* *
174428 AAGTCCACAACTTCGTGGCAC-CTTTTTCTTTTT
1 AAGTCCACAAC-TCGTGGCACTCTTTTTCCTTCT
* *
174461 AAGCCCACAACTCCGTGGCACTCTTTCTCCTTCT
1 AAGTCCACAACT-CGTGGCACTCTTTTTCCTTCT
*
174495 AAGTCCACAACTCTGTGGCACCCTTTT
1 AAGTCCACAACTC-GTGGCACTCTTTT
174522 ACGTCCACAG
Statistics
Matches: 179, Mismatches: 22, Indels: 43
0.73 0.09 0.18
Matches are distributed among these distances:
26 2 0.01
27 16 0.09
28 4 0.02
30 1 0.01
31 21 0.12
32 1 0.01
33 35 0.20
34 65 0.36
35 22 0.12
36 12 0.07
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.33
Consensus pattern (33 bp):
AAGTCCACAACTCGTGGCACTCTTTTTCCTTCT
Found at i:174404 original size:61 final size:61
Alignment explanation
Indices: 174333--174552 Score: 246
Period size: 61 Copynumber: 3.5 Consensus size: 61
174323 TTCCTTCTTA
* *
174333 AAGCCCACAACTACGTGGCACTTTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCGGTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCGGTTT
* * **
174394 AAGCCTACAACTCCATGGCACTCTTTTTCCTTCTAAGTCCACAACT-TCGTGGCACCTTTTTCTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCT-GTGGCA-C-----CGG
174458 TTT
59 TTT
* **
174461 AAGCCCACAACTCCGTGGCACTCTTTCTCCTTCTAAGTCCACAACTCTGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCGGTTT
* * * *
174522 ACGTCCACAGCTCCGTGGCA-TCTTTCTCCTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTT
174553 TTCAAAAGCC
Statistics
Matches: 138, Mismatches: 13, Indels: 17
0.82 0.08 0.10
Matches are distributed among these distances:
60 12 0.09
61 70 0.51
62 1 0.01
66 1 0.01
67 53 0.38
68 1 0.01
ACGTcount: A:0.19, C:0.34, G:0.14, T:0.33
Consensus pattern (61 bp):
AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCGGTTT
Found at i:174541 original size:128 final size:130
Alignment explanation
Indices: 174267--174582 Score: 362
Period size: 128 Copynumber: 2.4 Consensus size: 130
174257 AGTGGCATCA
* *
174267 AAGTCCAC-GACTCCGTGGCAC-CTTCTT--TTCAAAGCCCACAACTCTGTGGCATCTTTTTCCT
1 AAGTCCACAG-CTCCGTGGCACTCTTTTTCCTTCAAAGCCCACAACTCTGTGGCACCTTTTTCCT
* * *
174328 TCTTAAAGCCCACAACTACGTGGCACTTTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCGGTT
65 TCTTAAAGCCCACAACTACGTGGCACTCTTTCTCCTTCTAAGTCCACAACTCTGTGGCACCCGTT
174393 T
130 T
* * * *
174394 AAG-CCTACAACTCCATGGCACTCTTTTTCCTTCTAAGTCCACAACT-TCGTGGCACCTTTTT-C
1 AAGTCC-ACAGCTCCGTGGCACTCTTTTTCCTTCAAAGCCCACAACTCT-GTGGCACCTTTTTCC
* * *
174456 TT-TTTAAGCCCACAACTCCGTGGCACTCTTTCTCCTTCTAAGTCCACAACTCTGTGGCACCCTT
64 TTCTTAAAGCCCACAACTACGTGGCACTCTTTCTCCTTCTAAGTCCACAACTCTGTGGCACCCGT
174520 TT
129 TT
* * * *
174522 ACGTCCACAGCTCCGTGGCA-TCTTTCTCCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTT
1 AAGTCCACAGCTCCGTGGCACTCTTTTTCC--TTC-AAAGCCCACAACTCTGTGGC-ACCTT
174583 CAAAAGCCCA
Statistics
Matches: 157, Mismatches: 20, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
126 2 0.01
127 23 0.15
128 77 0.49
129 9 0.06
130 41 0.26
131 5 0.03
ACGTcount: A:0.21, C:0.34, G:0.14, T:0.32
Consensus pattern (130 bp):
AAGTCCACAGCTCCGTGGCACTCTTTTTCCTTCAAAGCCCACAACTCTGTGGCACCTTTTTCCTT
CTTAAAGCCCACAACTACGTGGCACTCTTTCTCCTTCTAAGTCCACAACTCTGTGGCACCCGTTT
Found at i:174576 original size:63 final size:61
Alignment explanation
Indices: 174337--174582 Score: 167
Period size: 61 Copynumber: 3.9 Consensus size: 61
174327 TTCTTAAAGC
* * * * * * * *
174337 CCACAACTACGTGGCACTTTTTTTCCTTCTAAGTCCACAACTCTGTGGC-ACCGGTTTAAG-
1 CCACAACTCCGTGGCACTCTTTCTCCTTCAAAGCCCACAACTCAGTGGCAACC-TTTTACGT
* * * * *
174397 CCTACAACTCCATGGCACTCTTTTTCCTTCTAAGTCCACAACTTC-GTGGCACCTTTTTCTTTTT
1 CC-ACAACTCCGTGGCACTCTTTCTCCTTCAAAGCCCACAAC-TCAGTGGCAAC-----C-TTTT
* *
174461 AAGC
58 ACGT
* * * *
174465 CCACAACTCCGTGGCACTCTTTCTCCTTCTAAGTCCACAACTCTGTGGCACCCTTTTACGT
1 CCACAACTCCGTGGCACTCTTTCTCCTTCAAAGCCCACAACTCAGTGGCAACCTTTTACGT
* *
174526 CCACAGCTCCGTGGCA-TCTTTCTCCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTT
1 CCACAACTCCGTGGCACTCTTTCTCC--TTC-AAAGCCCACAACTCAGTGGCAACCTT
174583 CAAAAGCCCA
Statistics
Matches: 157, Mismatches: 16, Indels: 23
0.80 0.08 0.12
Matches are distributed among these distances:
60 11 0.07
61 62 0.39
62 7 0.04
63 21 0.13
66 2 0.01
67 52 0.33
68 2 0.01
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (61 bp):
CCACAACTCCGTGGCACTCTTTCTCCTTCAAAGCCCACAACTCAGTGGCAACCTTTTACGT
Found at i:174626 original size:33 final size:32
Alignment explanation
Indices: 174549--174834 Score: 307
Period size: 33 Copynumber: 9.0 Consensus size: 32
174539 GCATCTTTCT
* **
174549 CCTTTTCAAAAG-CC-CACAAGTCAGTGGCAA
1 CCTTTTCTAAAGCCCACACAAGTTGGTGGCAA
* *
174579 CC--TTCAAAAGCCCACATAAGTTGGTGGCAA
1 CCTTTTCTAAAGCCCACACAAGTTGGTGGCAA
174609 CCATTTTCTAAAGCCCACACAAGTTGGTGGCAA
1 CC-TTTTCTAAAGCCCACACAAGTTGGTGGCAA
* *
174642 CCTTTTTCCAAAGCCCACACAAGTCGGTGGCAA
1 CC-TTTTCTAAAGCCCACACAAGTTGGTGGCAA
*** *
174675 CCCCCTC-AAAGCCCACACAAGTCGGTGGCAA
1 CCTTTTCTAAAGCCCACACAAGTTGGTGGCAA
174706 CCTTCTTCTAAAGCCCACACAAGTTGGTGGCAA
1 CCTT-TTCTAAAGCCCACACAAGTTGGTGGCAA
**
174739 TCC-CCTCTAAAGCCCACACAAGTTGGTGGCAA
1 -CCTTTTCTAAAGCCCACACAAGTTGGTGGCAA
** * *
174771 TCC-CCTCTAAAGCCCACACAAGTCGGTGGCAG
1 -CCTTTTCTAAAGCCCACACAAGTTGGTGGCAA
*
174803 CCTTCTTCAAAAGCCCACACAAGTTGGTGGCA
1 CCTT-TTCTAAAGCCCACACAAGTTGGTGGCA
174835 TCTTCCTTTA
Statistics
Matches: 223, Mismatches: 23, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
28 8 0.04
29 2 0.01
30 17 0.08
31 28 0.13
32 61 0.27
33 105 0.47
34 2 0.01
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.20
Consensus pattern (32 bp):
CCTTTTCTAAAGCCCACACAAGTTGGTGGCAA
Found at i:174702 original size:64 final size:64
Alignment explanation
Indices: 174563--174834 Score: 300
Period size: 64 Copynumber: 4.2 Consensus size: 64
174553 TTCAAAAGCC
** * * * ***
174563 CACAAGTCAGTGGCAA-CCTTCAAAAGCCCACATAAGTTGGTGGCAACCATTTTCTAAAGCCCA
1 CACAAGTTGGTGGCAACCCTTCTAAAGCCCACACAAGTCGGTGGCAACCACCCTCTAAAGCCCA
* *
174626 CACAAGTTGGTGGCAACCTTTTTCCAAAGCCCACACAAGTCGGTGGCAACC-CCCTC-AAAGCCC
1 CACAAGTTGGTGGCAACC--CTTCTAAAGCCCACACAAGTCGGTGGCAACCACCCTCTAAAGCCC
174689 A
64 A
* * *
174690 CACAAGTCGGTGGCAACCTTCTTCTAAAGCCCACACAAGTTGGTGGCAATC-CCCTCTAAAGCCC
1 CACAAGTTGGTGGCAACC--CTTCTAAAGCCCACACAAGTCGGTGGCAACCACCCTCTAAAGCCC
174754 A
64 A
* * ** * *
174755 CACAAGTTGGTGGCAATCCCCTCTAAAGCCCACACAAGTCGGTGGCAGCCTTCTTCAAAAGCCCA
1 CACAAGTTGGTGGCAA-CCCTTCTAAAGCCCACACAAGTCGGTGGCAACCACCCTCTAAAGCCCA
174820 CACAAGTTGGTGGCA
1 CACAAGTTGGTGGCA
174835 TCTTCCTTTA
Statistics
Matches: 181, Mismatches: 22, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
63 14 0.08
64 87 0.48
65 51 0.28
66 29 0.16
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.19
Consensus pattern (64 bp):
CACAAGTTGGTGGCAACCCTTCTAAAGCCCACACAAGTCGGTGGCAACCACCCTCTAAAGCCCA
Found at i:174702 original size:97 final size:97
Alignment explanation
Indices: 174548--174834 Score: 381
Period size: 97 Copynumber: 3.0 Consensus size: 97
174538 GGCATCTTTC
* * * *
174548 TCCTTTTCAAAAG-CC-CACAAGTCAGTGGCAA-CCTTCAAAAGCCCACATAAGTTGGTGGCAAC
1 TCCTTTTCAAAAGCCCACACAAGTCGGTGGCAACCCCTCAAAAGCCCACACAAGTCGGTGGCAAC
174610 CATT-TTCTAAAGCCCACACAAGTTGGTGGCAA
66 C-TTCTTCTAAAGCCCACACAAGTTGGTGGCAA
*
174642 -CCTTTTTCCAAAGCCCACACAAGTCGGTGGCAACCCCCTC-AAAGCCCACACAAGTCGGTGGCA
1 TCC-TTTTCAAAAGCCCACACAAGTCGGTGGCAA-CCCCTCAAAAGCCCACACAAGTCGGTGGCA
174705 ACCTTCTTCTAAAGCCCACACAAGTTGGTGGCAA
64 ACCTTCTTCTAAAGCCCACACAAGTTGGTGGCAA
** * * * *
174739 TCC-CCTCTAAAGCCCACACAAGTTGGTGGCAATCCCCTCTAAAGCCCACACAAGTCGGTGGCAG
1 TCCTTTTCAAAAGCCCACACAAGTCGGTGGCAA-CCCCTCAAAAGCCCACACAAGTCGGTGGCAA
*
174803 CCTTCTTCAAAAGCCCACACAAGTTGGTGGCA
65 CCTTCTTCTAAAGCCCACACAAGTTGGTGGCA
174835 TCTTCCTTTA
Statistics
Matches: 173, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
93 2 0.01
94 9 0.05
95 2 0.01
96 48 0.28
97 106 0.61
98 6 0.03
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.20
Consensus pattern (97 bp):
TCCTTTTCAAAAGCCCACACAAGTCGGTGGCAACCCCTCAAAAGCCCACACAAGTCGGTGGCAAC
CTTCTTCTAAAGCCCACACAAGTTGGTGGCAA
Found at i:174897 original size:49 final size:47
Alignment explanation
Indices: 174840--175553 Score: 682
Period size: 49 Copynumber: 15.1 Consensus size: 47
174830 TGGCATCTTC
*
174840 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTGT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TAT
* * * *
174889 CTTTAAGTCCAATGTAGCTGGCCTTAAATCAGCACATTGGCACC-CT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTAT
*
174935 -TTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-T-AT
* * * *
174983 CTTTAAGTCTAATGTAGCTAGCCTTGAATCAGCACATTGGCA-C---
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTAT
*
175026 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-T-AT
* *
175075 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---A-
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTAT
** * *
175118 CTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC-CT-AT
* *
175167 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C---
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTAT
*
175210 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-T-AT
* * * *
175259 CTTTAAGTCCAATGTAGTTGGCCTTGAATTAGCACATTGGCA---A-
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTAT
** * *
175302 CTCCAAGTCCAATATTGCTAGCCTTGAATCAGCATATTGGCACCCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCT-AT
* * * * *
175351 CTTTTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTAGCA-C--T
1 C-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTAT
175396 -TTTAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
1 CTTTAAGTCCAATAT-AGCTGGCCTTGAATCAGCATATTGGCACC----T-AT
* ***
175447 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGTCTTTGTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-G-C-ACCT-AT
* *
175499 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-T-AT
175548 CTTTAA
1 CTTTAA
175554 CATTCCTAAG
Statistics
Matches: 554, Mismatches: 66, Indels: 90
0.78 0.09 0.13
Matches are distributed among these distances:
43 182 0.33
44 5 0.01
45 42 0.08
46 1 0.00
48 5 0.01
49 204 0.37
50 34 0.06
51 2 0.00
52 76 0.14
53 1 0.00
54 1 0.00
55 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (47 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTAT
Found at i:175075 original size:92 final size:92
Alignment explanation
Indices: 174839--175553 Score: 1007
Period size: 92 Copynumber: 7.6 Consensus size: 92
174829 GTGGCATCTT
* **
174839 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
*
174904 AGCTGGCCTTAAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * *
174931 CCCTTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAAT
1 -CC-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAAT
*
174996 GTAGCTAGCCTTGAATCAGCACATTGGCA
64 GTAGCTGGCCTTGAATCAGCACATTGGCA
*
175025 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
175090 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* ** *
175117 ACTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
175182 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
175209 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
* *
175274 AGTTGGCCTTGAATTAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* ** * * * *
175301 ACTCCAAGTCCAATATTGCTAGCCTTGAATCAGCATATTGGCACCCTCATCTTTTAAGCCCAATG
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC-TTTAAGTCCAATG
* *
175366 TCGCTGGCCTTGAATCAGCACATTAGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
* *
175394 CTTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTTTAAGTCCAA
* * *
175459 TATCGCTGGCCTTGAATCAGCATATTGGTGTCTTTGTCA
63 TGTAGCTGGCCTTGAATCAGCACA-T--TG-----G-CA
* *
175498 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAA
175554 CATTCCTAAG
Statistics
Matches: 558, Mismatches: 50, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
92 302 0.54
93 78 0.14
94 84 0.15
95 32 0.06
96 6 0.01
98 1 0.00
101 10 0.02
102 1 0.00
103 1 0.00
104 43 0.08
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (92 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:175474 original size:52 final size:52
Alignment explanation
Indices: 175396--175544 Score: 253
Period size: 52 Copynumber: 2.9 Consensus size: 52
175386 CATTAGCACT
*
175396 TTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATC
***
175448 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGTCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATC
*
175500 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
175545 CATCTTTAAC
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 89 1.00
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (52 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATC
Found at i:176443 original size:19 final size:19
Alignment explanation
Indices: 176401--176471 Score: 115
Period size: 19 Copynumber: 3.7 Consensus size: 19
176391 TTTCAACGAT
176401 TTGTATCGATACATAAAGTA
1 TTGTATCGATACAT-AAGTA
*
176421 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTA
*
176440 TTGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTA
176459 TTGTATCGATACA
1 TTGTATCGATACA
176472 ATGTAAGCTA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
19 35 0.71
20 14 0.29
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (19 bp):
TTGTATCGATACATAAGTA
Found at i:176532 original size:13 final size:13
Alignment explanation
Indices: 176514--176538 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
176504 ATTACTCAAA
176514 TGTATCGATACAT
1 TGTATCGATACAT
176527 TGTATCGATACA
1 TGTATCGATACA
176539 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:178757 original size:24 final size:26
Alignment explanation
Indices: 178730--178780 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
178720 ATCAAAAATT
178730 TATTCAT-C-GGGGACACTCCAACCC
1 TATTCATCCAGGGGACACTCCAACCC
*
178754 TATTCCTCCGAGGGGACACTCCAACCC
1 TATTCATCC-AGGGGACACTCCAACCC
178781 CGTTTTTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 6 0.26
25 1 0.04
27 16 0.70
ACGTcount: A:0.24, C:0.39, G:0.18, T:0.20
Consensus pattern (26 bp):
TATTCATCCAGGGGACACTCCAACCC
Found at i:179712 original size:20 final size:20
Alignment explanation
Indices: 179687--179739 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
179677 TACGACAAGC
*
179687 ATGTATTGATACATTCACTT
1 ATGTATCGATACATTCACTT
179707 ATGTATCGATACATTCACTT
1 ATGTATCGATACATTCACTT
* *
179727 ATGCATCAATACA
1 ATGTATCGATACA
179740 AATTATTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTCACTT
Found at i:180584 original size:53 final size:52
Alignment explanation
Indices: 180492--180594 Score: 122
Period size: 51 Copynumber: 2.0 Consensus size: 52
180482 TGAAAAAGAG
180492 TGCCACTGACCTGTGAGCTTTAAAAGGATGCCACCAACTTATGGG-TTTGGA
1 TGCCACTGACCTGTGAGCTTTAAAAGGATGCCACCAACTTATGGGCTTTGGA
* * *
180543 TGCCACTGACTTGT-AGACTTTGAAAACGGATGCC-CATAACTTGTGGGCTTTG
1 TGCCACTGACCTGTGAG-CTTT-AAAA-GGATGCCAC-CAACTTATGGGCTTTG
180595 AAAAGGGTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
50 2 0.05
51 17 0.39
52 5 0.11
53 16 0.36
54 4 0.09
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (52 bp):
TGCCACTGACCTGTGAGCTTTAAAAGGATGCCACCAACTTATGGGCTTTGGA
Found at i:180756 original size:88 final size:89
Alignment explanation
Indices: 180414--180831 Score: 389
Period size: 88 Copynumber: 4.8 Consensus size: 89
180404 CCAATGACTC
* * * *
180414 GTGGGCTTTAAAGAATGG-TGCCACTAACTTGTGGGCTTTGAAAAAGGATACCACTGACTTGTGG
1 GTGGGCTTTGAA-AAGGGATGCCACTGACTTGTGGGCTTTG-AAAAGGATACCACTGACTTGTAG
* * *
180478 GCTTTGAAAAA-GAGTGCCACTGACCT
64 GCTTTGAAAAAGGA-TGCCATTAACTT
* ** * * *
180504 GTGAGCTTT-AAAA-GGATGCCACCAACTTATGGG-TTT-----GGATGCCACTGACTTGTAGAC
1 GTGGGCTTTGAAAAGGGATGCCACTGACTTGTGGGCTTTGAAAAGGATACCACTGACTTGTAGGC
*
180561 TTTGAAAACGGATGCCCA-TAACTT
66 TTTGAAAAAGGATG-CCATTAACTT
* * * *
180585 GTGGGCTTTGAAAAGGG-TGCCATTGATTTGTGGGCTTTGAAAGGGGGATGA-CATTGACTTGTA
1 GTGGGCTTTGAAAAGGGATGCCACTGACTTGTGGGCTTTGAAA--AGGAT-ACCACTGACTTGTA
180648 GGCTTTGAAAAAGGATGCCATTAACTT
63 GGCTTTGAAAAAGGATGCCATTAACTT
*
180675 GTGGGCTTT-AAAAGGGGATGTCACTGACTTGTGGGCTTTGAAAAGGATACCACTGACTTGT-GG
1 GTGGGCTTTGAAAA-GGGATGCCACTGACTTGTGGGCTTTGAAAAGGATACCACTGACTTGTAGG
** *
180738 CTTTGAAAGGGGATGCCATTGACTT
65 CTTTGAAAAAGGATGCCATTAACTT
* * ** * * *
180763 ATGGACTTTGAAAAGGGATATCACTGACTTGTGGGCTTTGAAAGATGATGCCACTAACTTGTAGG
1 GTGGGCTTTGAAAAGGGATGCCACTGACTTGTGGGCTTTGAAA-AGGATACCACTGACTTGTAGG
180828 CTTT
65 CTTT
180832 TTGGGAAAAA
Statistics
Matches: 274, Mismatches: 33, Indels: 42
0.79 0.09 0.12
Matches are distributed among these distances:
81 40 0.15
82 21 0.08
83 5 0.02
87 5 0.02
88 77 0.28
89 42 0.15
90 62 0.23
91 22 0.08
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (89 bp):
GTGGGCTTTGAAAAGGGATGCCACTGACTTGTGGGCTTTGAAAAGGATACCACTGACTTGTAGGC
TTTGAAAAAGGATGCCATTAACTT
Found at i:180796 original size:118 final size:120
Alignment explanation
Indices: 180434--180831 Score: 333
Period size: 118 Copynumber: 3.4 Consensus size: 120
180424 AAGAATGGTG
* * * *
180434 CCACTAACTTGTGGGCTTTGAAAA-AGGATACCACTGACTTGTGGGCTTTGAAAAAGAGTGCCAC
1 CCACTAACTTGTGGGCTTT-AAAAGAGGATGCCACTAACTTGTGGGCTTTGAAAAGGA-TACCAC
* * * * *** * *
180498 TGACCTGTGAGCTTT-AAA--AGGATGCCACCAACTTAT-GGGTTT------GGATG
64 TGACTTGTGGGCTTTGAAAGGGGGATGACATTGACTTATAGGCTTTGAAAAAGGATA
* * * * * * *
180545 CCACTGACTTGTAGACTTTGAAAA-CGGATGCC-CATAACTTGTGGGCTTTGAAAAGGGTGCCAT
1 CCACTAACTTGTGGGCTTT-AAAAGAGGATGCCAC-TAACTTGTGGGCTTTGAAAAGGATACCAC
* * *
180608 TGATTTGTGGGCTTTGAAAGGGGGATGACATTGACTTGTAGGCTTTGAAAAAGGATG
64 TGACTTGTGGGCTTTGAAAGGGGGATGACATTGACTTATAGGCTTTGAAAAAGGATA
* * * *
180665 CCATTAACTTGTGGGCTTTAAAAGGGGATGTCACTGACTTGTGGGCTTTGAAAAGGATACCACTG
1 CCACTAACTTGTGGGCTTTAAAAGAGGATGCCACTAACTTGTGGGCTTTGAAAAGGATACCACTG
* *
180730 ACTTGT-GGCTTTGAAA-GGGGATGCCATTGACTTAT-GGACTTTGAAAAGGGATA
66 ACTTGTGGGCTTTGAAAGGGGGATGACATTGACTTATAGG-CTTTGAAAAAGGATA
* * * * *
180783 TCACTGACTTGTGGGCTTTGAAAGATGATGCCACTAACTTGTAGGCTTT
1 CCACTAACTTGTGGGCTTTAAAAGAGGATGCCACTAACTTGTGGGCTTT
180832 TTGGGAAAAA
Statistics
Matches: 230, Mismatches: 43, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
110 18 0.08
111 50 0.22
113 12 0.05
114 5 0.02
117 2 0.01
118 70 0.30
119 14 0.06
120 58 0.25
121 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (120 bp):
CCACTAACTTGTGGGCTTTAAAAGAGGATGCCACTAACTTGTGGGCTTTGAAAAGGATACCACTG
ACTTGTGGGCTTTGAAAGGGGGATGACATTGACTTATAGGCTTTGAAAAAGGATA
Found at i:180823 original size:30 final size:29
Alignment explanation
Indices: 180402--180831 Score: 351
Period size: 30 Copynumber: 14.7 Consensus size: 29
180392 TTAAAAAAAG
* * *
180402 TGCCAATGACTCGTGGGCTTTAAAGAATGG-
1 TGCCACTGACTTGTGGGCTTTGAA-AA-GGA
*
180432 TGCCACTAACTTGTGGGCTTTGAAAAAGGA
1 TGCCACTGACTTGTGGGCTTTG-AAAAGGA
* *
180462 TACCACTGACTTGTGGGCTTTGAAAAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAAGGA
* *
180491 GTGCCACTGACCTGTGAGCTTT-AAAAGGA
1 -TGCCACTGACTTGTGGGCTTTGAAAAGGA
** *
180520 TGCCACCAACTTATGGG-TTT-----GGA
1 TGCCACTGACTTGTGGGCTTTGAAAAGGA
* *
180543 TGCCACTGACTTGTAGACTTTGAAAACGGA
1 TGCCACTGACTTGTGGGCTTTGAAAA-GGA
* *
180573 TGCC-CATAACTTGTGGGCTTTGAAAAGGG
1 TGCCAC-TGACTTGTGGGCTTTGAAAAGGA
* * *
180602 TGCCATTGATTTGTGGGCTTTGAAAGGGGGA
1 TGCCACTGACTTGTGGGCTTTGAAA--AGGA
* * *
180633 TGACATTGACTTGTAGGCTTTGAAAAAGGA
1 TGCCACTGACTTGTGGGCTTTG-AAAAGGA
* *
180663 TGCCATTAACTTGTGGGCTTT-AAAAGGGGA
1 TGCCACTGACTTGTGGGCTTTGAAAA--GGA
*
180693 TGTCACTGACTTGTGGGCTTTGAAAAGGA
1 TGCCACTGACTTGTGGGCTTTGAAAAGGA
* *
180722 TACCACTGACTTGT-GGCTTTGAAAGGGGA
1 TGCCACTGACTTGTGGGCTTTGAAA-AGGA
* * *
180751 TGCCATTGACTTATGGACTTTGAAAAGGGA
1 TGCCACTGACTTGTGGGCTTTGAAAA-GGA
** *
180781 TATCACTGACTTGTGGGCTTTGAAAGATGA
1 TGCCACTGACTTGTGGGCTTTGAAA-AGGA
* *
180811 TGCCACTAACTTGTAGGCTTT
1 TGCCACTGACTTGTGGGCTTT
180832 TTGGGAAAAA
Statistics
Matches: 320, Mismatches: 58, Indels: 44
0.76 0.14 0.10
Matches are distributed among these distances:
23 15 0.05
24 3 0.01
27 3 0.01
28 26 0.08
29 67 0.21
30 175 0.55
31 28 0.09
32 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (29 bp):
TGCCACTGACTTGTGGGCTTTGAAAAGGA
Found at i:199546 original size:20 final size:20
Alignment explanation
Indices: 199521--199575 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
199511 AATAGCTTGC
*
199521 ATGTATCGATACATTAAAGA
1 ATGTATTGATACATTAAAGA
*
199541 ATGTATTGATAGATTAAAGA
1 ATGTATTGATACATTAAAGA
199561 ATGTATTGATACATT
1 ATGTATTGATACATT
199576 TGGGTCAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.42, C:0.05, G:0.16, T:0.36
Consensus pattern (20 bp):
ATGTATTGATACATTAAAGA
Found at i:200200 original size:82 final size:82
Alignment explanation
Indices: 200114--200299 Score: 198
Period size: 82 Copynumber: 2.3 Consensus size: 82
200104 GGTGAAACCA
* * * *
200114 ATAAAATCAACCAATTAGAGGGGCTCGCCAAGGCAAAA-CTGATAAAGCTAACAAGTTAAAAGAG
1 ATAAAGTCAACCAATTAGAGGGGCTAGCCAAGGCAAAATC-AATAAAGCCAACAAGTTAAAAGAG
*
200178 TTGACCAGGGTAAAATCT-
65 TTGACCAGGGCAAAA-CTG
* * * * * * * * *
200196 ATAAAGTCAACCAATT-GAAAGGGTTAGCTAGGGCAAAATCAATAAAGCCAATAGGTTAGAGGGG
1 ATAAAGTCAACCAATTAG-AGGGGCTAGCCAAGGCAAAATCAATAAAGCCAACAAGTTAAAAGAG
200260 TTGACCAGGGCAAAACTG
65 TTGACCAGGGCAAAACTG
200278 ATAAAGTCAACCAATTAGAGGG
1 ATAAAGTCAACCAATTAGAGGG
200300 TAGGTTAACA
Statistics
Matches: 85, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
81 3 0.04
82 80 0.94
83 2 0.02
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.18
Consensus pattern (82 bp):
ATAAAGTCAACCAATTAGAGGGGCTAGCCAAGGCAAAATCAATAAAGCCAACAAGTTAAAAGAGT
TGACCAGGGCAAAACTG
Found at i:200296 original size:41 final size:41
Alignment explanation
Indices: 200114--200369 Score: 134
Period size: 41 Copynumber: 6.2 Consensus size: 41
200104 GGTGAAACCA
* * *
200114 ATAAAATCAACCAATTAGAGGGGCTCG-CCAAGGCAAAACTG
1 ATAAAGTCAACCAATTAGAGGGG-TTGACCAGGGCAAAACTG
* * * *
200155 ATAAAG-CTAA-CAAGTTAAAAGAGTTGACCAGGGTAAAATCT-
1 ATAAAGTC-AACCAA-TTAGAGGGGTTGACCAGGGCAAAA-CTG
* * *
200196 ATAAAGTCAACCAATT-GAAAGGGTT-AGCTAGGGCAAAA-TCA
1 ATAAAGTCAACCAATTAG-AGGGGTTGA-CCAGGGCAAAACT-G
* * *
200237 ATAAAGCCAA-TAGGTTAGAGGGGTTGACCAGGGCAAAACTG
1 ATAAAGTCAACCA-ATTAGAGGGGTTGACCAGGGCAAAACTG
* * * * *
200278 ATAAAGTCAACCAATTAGAGGGTAGGTTAACAAAGGTAAAATTG
1 ATAAAGTCAACCAATTAGA-GG--GGTTGACCAGGGCAAAACTG
* * * * *
200322 ATAAAGTGAATCAATTAAAGGGTTTGACTAAGGG-AAAACTG
1 ATAAAGTCAACCAATTAGAGGGGTTGAC-CAGGGCAAAACTG
200363 ATAAAGT
1 ATAAAGT
200370 TGAGTTGACC
Statistics
Matches: 164, Mismatches: 32, Indels: 38
0.70 0.14 0.16
Matches are distributed among these distances:
39 1 0.01
40 8 0.05
41 106 0.65
42 16 0.10
43 2 0.01
44 31 0.19
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.20
Consensus pattern (41 bp):
ATAAAGTCAACCAATTAGAGGGGTTGACCAGGGCAAAACTG
Found at i:200997 original size:50 final size:50
Alignment explanation
Indices: 200930--201028 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
200920 TGAAGGAAAT
* * *
200930 GAACATGATAGGGAATATGTTATTTCTAAAATTTT-TATCAATAGCTGAAG
1 GAACATGATAGGGAATAT-ATAGTTCTAAAATTTTCCATCAATAGCTGAAG
* * *
200980 GAACATGATGGGGAATATATGGTTCTAAAATTTTCCATTAATAGCTGAA
1 GAACATGATAGGGAATATATAGTTCTAAAATTTTCCATCAATAGCTGAA
201029 ACATATTGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 13 0.31
50 29 0.69
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.34
Consensus pattern (50 bp):
GAACATGATAGGGAATATATAGTTCTAAAATTTTCCATCAATAGCTGAAG
Found at i:201086 original size:126 final size:126
Alignment explanation
Indices: 200952--201222 Score: 375
Period size: 126 Copynumber: 2.2 Consensus size: 126
200942 GAATATGTTA
*
200952 TTTCTAAAATTTTTATCAATAGCTGAAGGAACATGATGGGGAATATATGGTTCTAAAATTTTCC-
1 TTTCTAAAATTTTTATCAATAGCTGAAGGAACATGATAGGGAATATATGGTTCTAAAA-TTTCCT
* * * * * * *
201016 ATTAA-TAGCTGAAACATATTGATAACAAGCTGAAGGATAGGAATATAATGGAAAATATATGG
65 ATCAACAATC-GAAACATACTAATAACAAGCTAAAGGAAAGGAATATAATGGAAAATATATGG
* *
201078 TTTCTAAAAATTTTATCAATAGTTGAAGGAACATGATAGGGAATATATGGTTCTAAAATTTCCTA
1 TTTCTAAAATTTTTATCAATAGCTGAAGGAACATGATAGGGAATATATGGTTCTAAAATTTCCTA
* * * **
201143 TCAACAATCGAAACTTGCTAATAACAAGCTAAAGGAAAGGAATATGATGGGGAATATATGG
66 TCAACAATCGAAACATACTAATAACAAGCTAAAGGAAAGGAATATAATGGAAAATATATGG
201204 TTTCTAAAATTTTTATCAA
1 TTTCTAAAATTTTTATCAA
201223 CAATAAAAAA
Statistics
Matches: 127, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
125 5 0.04
126 120 0.94
127 2 0.02
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.32
Consensus pattern (126 bp):
TTTCTAAAATTTTTATCAATAGCTGAAGGAACATGATAGGGAATATATGGTTCTAAAATTTCCTA
TCAACAATCGAAACATACTAATAACAAGCTAAAGGAAAGGAATATAATGGAAAATATATGG
Found at i:201545 original size:16 final size:16
Alignment explanation
Indices: 201526--201642 Score: 90
Period size: 16 Copynumber: 7.3 Consensus size: 16
201516 GAATCTAAAC
*
201526 TGACCCAAACCCGAAA
1 TGACCCAAACCCAAAA
* *
201542 TGACCCAAATCCAGAA
1 TGACCCAAACCCAAAA
* * *
201558 TAACCCGAACCCGAAA
1 TGACCCAAACCCAAAA
** * *
201574 TGACCTGAATCTAAAA
1 TGACCCAAACCCAAAA
*
201590 TAACCCAAACCCAAAA
1 TGACCCAAACCCAAAA
* * *
201606 TGTCCCAAATCCTAAA
1 TGACCCAAACCCAAAA
* *
201622 TGACCCGAACCAAAAA
1 TGACCCAAACCCAAAA
201638 TGACC
1 TGACC
201643 TTAATAATTA
Statistics
Matches: 74, Mismatches: 27, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
16 74 1.00
ACGTcount: A:0.44, C:0.32, G:0.10, T:0.13
Consensus pattern (16 bp):
TGACCCAAACCCAAAA
Found at i:201574 original size:32 final size:31
Alignment explanation
Indices: 201528--201642 Score: 113
Period size: 32 Copynumber: 3.6 Consensus size: 31
201518 ATCTAAACTG
*
201528 ACCCAAACCCGAAATGACCCAAATCCAGAATA
1 ACCCAAACCCAAAATGACCCAAATCCA-AATA
* * ** *
201560 ACCCGAACCCGAAATGACCTGAATCTAAAATA
1 ACCCAAACCCAAAATGACCCAAATC-CAAATA
* *
201592 ACCCAAACCCAAAATGTCCCAAATCCTAAATG
1 ACCCAAACCCAAAATGACCCAAATCC-AAATA
* *
201624 ACCCGAACCAAAAATGACC
1 ACCCAAACCCAAAATGACC
201643 TTAATAATTA
Statistics
Matches: 67, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
32 66 0.99
33 1 0.01
ACGTcount: A:0.45, C:0.33, G:0.10, T:0.12
Consensus pattern (31 bp):
ACCCAAACCCAAAATGACCCAAATCCAAATA
Found at i:201598 original size:64 final size:64
Alignment explanation
Indices: 201516--201643 Score: 177
Period size: 64 Copynumber: 2.0 Consensus size: 64
201506 TCAACAACCC
* * * **
201516 GAATCTAAACTGACCCAAACCCGAAATGACCCAAATCC-AGAATAACCCGAACCCGAAATGACCT
1 GAATCTAAAATAACCCAAACCCAAAATGACCCAAATCCTA-AATAACCCGAACCAAAAATGACCT
* *
201580 GAATCTAAAATAACCCAAACCCAAAATGTCCCAAATCCTAAATGACCCGAACCAAAAATGACCT
1 GAATCTAAAATAACCCAAACCCAAAATGACCCAAATCCTAAATAACCCGAACCAAAAATGACCT
201644 TAATAATTAA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
64 55 0.98
65 1 0.02
ACGTcount: A:0.45, C:0.31, G:0.10, T:0.14
Consensus pattern (64 bp):
GAATCTAAAATAACCCAAACCCAAAATGACCCAAATCCTAAATAACCCGAACCAAAAATGACCT
Found at i:202653 original size:16 final size:16
Alignment explanation
Indices: 202632--202749 Score: 76
Period size: 16 Copynumber: 7.0 Consensus size: 16
202622 TAAACCCGAT
202632 TGACCCGAACCCGAAA
1 TGACCCGAACCCGAAA
202648 TGACCCGAACTCGAACCCGAAA
1 TGA-CC---C--GAACCCGAAA
* *
202670 TGACCCAAACCCAAAA
1 TGACCCGAACCCGAAA
** *
202686 TGACCTAAATCC-AAA
1 TGACCCGAACCCGAAA
202701 GTGACCCGAACCCGAAA
1 -TGACCCGAACCCGAAA
* * *
202718 TAACCCAAACCCAAAA
1 TGACCCGAACCCGAAA
* *
202734 TGACTCGAGCCCGAAA
1 TGACCCGAACCCGAAA
202750 ACAACCCAAA
Statistics
Matches: 79, Mismatches: 15, Indels: 16
0.72 0.14 0.15
Matches are distributed among these distances:
15 3 0.04
16 54 0.68
17 5 0.06
18 1 0.01
20 1 0.01
21 2 0.03
22 13 0.16
ACGTcount: A:0.42, C:0.35, G:0.14, T:0.09
Consensus pattern (16 bp):
TGACCCGAACCCGAAA
Found at i:202747 original size:32 final size:33
Alignment explanation
Indices: 202661--202759 Score: 94
Period size: 32 Copynumber: 3.1 Consensus size: 33
202651 CCCGAACTCG
* * ** *
202661 AACCCGAAATGACCCAAACCC-AAAATGACCTA
1 AACCCAAAATGACCCGAACCCGAAAACAACCCA
* * *
202693 AATCCAAAGTGACCCGAACCCG-AAATAACCCA
1 AACCCAAAATGACCCGAACCCGAAAACAACCCA
* *
202725 AACCCAAAATGACTCGAGCCCGAAAACAACCCA
1 AACCCAAAATGACCCGAACCCGAAAACAACCCA
202758 AA
1 AA
202760 AATTTTATAA
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
32 43 0.80
33 11 0.20
ACGTcount: A:0.46, C:0.34, G:0.11, T:0.08
Consensus pattern (33 bp):
AACCCAAAATGACCCGAACCCGAAAACAACCCA
Found at i:202791 original size:15 final size:15
Alignment explanation
Indices: 202772--202806 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
202762 TTTTATAACT
202772 CAAAATAACCCAACC
1 CAAAATAACCCAACC
* *
202787 TAAAATAATCCAACC
1 CAAAATAACCCAACC
202802 CAAAA
1 CAAAA
202807 CCAACCCGAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.57, C:0.31, G:0.00, T:0.11
Consensus pattern (15 bp):
CAAAATAACCCAACC
Found at i:203718 original size:33 final size:33
Alignment explanation
Indices: 203681--203745 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
203671 TTTGAAGCAA
* *
203681 TGTATCGATACAATTTATCATGTGTCGATACAT
1 TGTATCGATACAATATATCATGTATCGATACAT
*
203714 TGTATCGATACAATATGTCATGTATCGATACA
1 TGTATCGATACAATATATCATGTATCGATACA
203746 AACAGTGGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (33 bp):
TGTATCGATACAATATATCATGTATCGATACAT
Found at i:203719 original size:20 final size:20
Alignment explanation
Indices: 203680--203746 Score: 58
Period size: 20 Copynumber: 3.7 Consensus size: 20
203670 GTTTGAAGCA
203680 ATGTATCGATACAATTTATC
1 ATGTATCGATACAATTTATC
*
203700 ATGTGTCGATAC-----AT-
1 ATGTATCGATACAATTTATC
* *
203714 -TGTATCGATACAATATGTC
1 ATGTATCGATACAATTTATC
203733 ATGTATCGATACAA
1 ATGTATCGATACAA
203747 ACAGTGGTAG
Statistics
Matches: 37, Mismatches: 3, Indels: 14
0.69 0.06 0.26
Matches are distributed among these distances:
13 10 0.27
15 2 0.05
18 1 0.03
20 24 0.65
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACAATTTATC
Found at i:203799 original size:19 final size:19
Alignment explanation
Indices: 203775--203811 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
203765 CTACCAGTTT
*
203775 CATGTATCGATACAATGAA
1 CATGTATCAATACAATGAA
203794 CATGTATCAATACAATGA
1 CATGTATCAATACAATGA
203812 TCGATACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (19 bp):
CATGTATCAATACAATGAA
Found at i:204481 original size:44 final size:44
Alignment explanation
Indices: 204421--204511 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 44
204411 TAATTAATGT
*
204421 TTTTAAAAAATTTCTCCCCCTCGATAAAAATTTATTTTCAAACA
1 TTTTAAAAAATTTCTCCCCCTCGATAAAAATTTATTTTCAAAAA
* * *
204465 TTTTGAAAATTTTCTCCCCCTTGATAAAAATTTATTTTCAAAAA
1 TTTTAAAAAATTTCTCCCCCTCGATAAAAATTTATTTTCAAAAA
204509 TTT
1 TTT
204512 CTCTCCCTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.36, C:0.18, G:0.03, T:0.43
Consensus pattern (44 bp):
TTTTAAAAAATTTCTCCCCCTCGATAAAAATTTATTTTCAAAAA
Found at i:205890 original size:20 final size:20
Alignment explanation
Indices: 205865--205912 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
205855 ACCCGGTTGT
* *
205865 GACCTGGGAGTGTCGATCGC
1 GACCTGGAAGTGCCGATCGC
205885 GACCTGGAAGTGCCGATCGC
1 GACCTGGAAGTGCCGATCGC
*
205905 AACCTGGA
1 GACCTGGA
205913 GGTGGCTGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.21, C:0.27, G:0.35, T:0.17
Consensus pattern (20 bp):
GACCTGGAAGTGCCGATCGC
Found at i:210240 original size:14 final size:14
Alignment explanation
Indices: 210221--210250 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
210211 TTCATTAGCC
210221 AACTTTTTAATATA
1 AACTTTTTAATATA
210235 AACTTTTTAATATA
1 AACTTTTTAATATA
210249 AA
1 AA
210251 GCACATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (14 bp):
AACTTTTTAATATA
Found at i:212433 original size:33 final size:33
Alignment explanation
Indices: 212396--212460 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
212386 TTTGAAGCAA
* *
212396 TGTATCGATACAATTTATCATGTATCAATACAT
1 TGTATCGATACAATGTACCATGTATCAATACAT
* *
212429 TGTATCGATACAATGTGCCATGTATCGATACA
1 TGTATCGATACAATGTACCATGTATCAATACA
212461 AACAATGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (33 bp):
TGTATCGATACAATGTACCATGTATCAATACAT
Found at i:218011 original size:20 final size:21
Alignment explanation
Indices: 217961--218012 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
217951 ATATAATTTG
* *
217961 TATCGATACAAAGAGTAAATG
1 TATCGATACATAGAGTAAATA
* *
217982 TATTGATACATA-AGTGAATA
1 TATCGATACATAGAGTAAATA
218002 TATCGATACAT
1 TATCGATACAT
218013 GCCTAAAATG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (21 bp):
TATCGATACATAGAGTAAATA
Found at i:219190 original size:21 final size:21
Alignment explanation
Indices: 219164--219239 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
219154 CTGCCAAGAA
*
219164 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
219185 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
219205 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
219226 ATGTATCGATACAT
1 ATGTATCGATACAT
219240 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:219210 original size:20 final size:20
Alignment explanation
Indices: 219185--219257 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
219175 CATCTTTTTT
219185 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
219205 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
219226 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
219246 ATGTATCGATAC
1 ATGTATCGATAC
219258 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:219221 original size:41 final size:41
Alignment explanation
Indices: 219164--219257 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
219154 CTGCCAAGAA
*
219164 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
219205 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
219246 ATGTATCGATAC
1 ATGTATCGATAC
219258 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:221751 original size:13 final size:13
Alignment explanation
Indices: 221733--221770 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
221723 ATAAACACCC
221733 TGTATCGATACAG
1 TGTATCGATACAG
*
221746 TGTATCGATACAT
1 TGTATCGATACAG
221759 TGTATCGATACA
1 TGTATCGATACA
221771 AATAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:223870 original size:15 final size:15
Alignment explanation
Indices: 223850--223880 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
223840 ATTTCGTTTG
*
223850 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
223865 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
223880 G
1 G
223881 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:227951 original size:13 final size:13
Alignment explanation
Indices: 227933--227958 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
227923 CAATTTTTTG
227933 TGTATCGATACAT
1 TGTATCGATACAT
227946 TGTATCGATACAT
1 TGTATCGATACAT
227959 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:228023 original size:21 final size:21
Alignment explanation
Indices: 227997--228072 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
227987 CTGCCAAGAA
*
227997 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
228018 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
228038 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
228059 ATGTATCGATACAT
1 ATGTATCGATACAT
228073 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:228043 original size:20 final size:20
Alignment explanation
Indices: 228018--228090 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
228008 CATCTTTTTT
228018 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
228038 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
228059 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
228079 ATGTATCGATAC
1 ATGTATCGATAC
228091 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:228054 original size:41 final size:41
Alignment explanation
Indices: 227997--228090 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
227987 CTGCCAAGAA
*
227997 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
228038 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
228079 ATGTATCGATAC
1 ATGTATCGATAC
228091 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:230266 original size:353 final size:353
Alignment explanation
Indices: 229609--230311 Score: 1039
Period size: 353 Copynumber: 2.0 Consensus size: 353
229599 ATGGTCAACC
* * * * *
229609 GGTTATTCCATCATCCCAAACTATTTCAGGATTGTGAAATGAACTCATGATGCTTGTCTCACCTC
1 GGTTATTCCATCATCCCAAACCACTCCAGGATTATGAAATGAACTCATGATGCTTATCTCACCTC
* * ** *
229674 CTTCTCTCGATTATGGACGTTCGGATGTCCGTGGCATGAGTTTAACCCAATGAAAAAATCAAAAA
66 CTTCTCTCGATTATAGACGTTCGGATGTCCGTGGCACGAGTTTAACCCAACAAAAAAAACAAAAA
* *
229739 TACTAAATACCTCCCATGCCTTGTTCTGGTACTGCTAAAGCATGAGCTTGAAAATTATTTTAAAA
131 TACCAAATACCTCCCATGCCTTGTTCTGGTAATGCTAAAGCATGAGCTTGAAAATTATTTTAAAA
229804 TATTAAATGATTTTTTTTCAAATTATATAATATTTTTCCCTAAAAATATGTCAAAATATCTTACC
196 TATTAAATGATTTTTTTTCAAATTATATAATATTTTTCCCTAAAAATATGTCAAAATATCTTACC
* * * * *
229869 AACAGTGTCTTATTTGCCCCCGGATCAGTCCAAATGAGAGAGTTATGATTTTTCAAACCTAAAAT
261 AACAGTGTCTTATTTACCCACGGATCAGTCCAAATCAAAGAGTTACGATTTTTCAAACCTAAAAT
* *
229934 GTTCATAATCCTTGGAATTAGTAAAGCG
326 GTTCATAATCCCTGGAATCAGTAAAGCG
* * * * *
229962 GGTTGTTCCATCATCCTAAACCACTCCGGGATTATGGAATGAACTCATGATGTTTATCTCACCTC
1 GGTTATTCCATCATCCCAAACCACTCCAGGATTATGAAATGAACTCATGATGCTTATCTCACCTC
* * *
230027 CTTTTCTCGATTATAGATGTTCGGATGTCCGTGGCACGAGTTTAACCCAACAAAAAAAACTGAAA
66 CTTCTCTCGATTATAGACGTTCGGATGTCCGTGGCACGAGTTTAACCCAACAAAAAAAAC-AAAA
* * *
230092 ATACCAAATATCTCCTATGCCTTGTTTTGGTAATGCTAAAGCATGAGCTTGAAAATTATTTTAAA
130 ATACCAAATACCTCCCATGCCTTGTTCTGGTAATGCTAAAGCATGAGCTTGAAAATTATTTTAAA
* * **
230157 ATATTAAATGA-TTTTTTTCAAATTGTATAATATTTTTCCCTAAACATATGTCAAAATATCTTTT
195 ATATTAAATGATTTTTTTTCAAATTATATAATATTTTTCCCTAAAAATATGTCAAAATATCTTAC
* ** **
230221 CAACGGTGTCTTATTTACCCACGGATCAGTCCGGATCAAAGAGTTACGATTTTTCAAACCTAGGA
260 CAACAGTGTCTTATTTACCCACGGATCAGTCCAAATCAAAGAGTTACGATTTTTCAAACCTAAAA
230286 TGTTCATAATCCCTGGAATCAGTAAA
325 TGTTCATAATCCCTGGAATCAGTAAA
230312 ATAAATTCTG
Statistics
Matches: 310, Mismatches: 39, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
353 236 0.76
354 74 0.24
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (353 bp):
GGTTATTCCATCATCCCAAACCACTCCAGGATTATGAAATGAACTCATGATGCTTATCTCACCTC
CTTCTCTCGATTATAGACGTTCGGATGTCCGTGGCACGAGTTTAACCCAACAAAAAAAACAAAAA
TACCAAATACCTCCCATGCCTTGTTCTGGTAATGCTAAAGCATGAGCTTGAAAATTATTTTAAAA
TATTAAATGATTTTTTTTCAAATTATATAATATTTTTCCCTAAAAATATGTCAAAATATCTTACC
AACAGTGTCTTATTTACCCACGGATCAGTCCAAATCAAAGAGTTACGATTTTTCAAACCTAAAAT
GTTCATAATCCCTGGAATCAGTAAAGCG
Found at i:231071 original size:26 final size:28
Alignment explanation
Indices: 231014--231072 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
231004 TCCTCATGTT
* *
231014 GGGGATACTCTAACCTCATTAATTTGAA
1 GGGGATACTCCAACCCCATTAATTTGAA
* *
231042 GGGG-TACTCCAACCCCATTATTTTGAG
1 GGGGATACTCCAACCCCATTAATTTGAA
231069 GGGG
1 GGGG
231073 TTGCCTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 23 0.85
28 4 0.15
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (28 bp):
GGGGATACTCCAACCCCATTAATTTGAA
Found at i:241324 original size:22 final size:22
Alignment explanation
Indices: 241296--241343 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
241286 GAAAAACCAT
241296 AATAAGTTTTAGTCACTTAAAA
1 AATAAGTTTTAGTCACTTAAAA
*
241318 AATAAGTTTTATTCACTTAAAA
1 AATAAGTTTTAGTCACTTAAAA
241340 AATA
1 AATA
241344 GTCTAAAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.38
Consensus pattern (22 bp):
AATAAGTTTTAGTCACTTAAAA
Found at i:243808 original size:20 final size:20
Alignment explanation
Indices: 243783--243834 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
243773 TTGTTTGCAG
243783 GTGATGGTTGCTGCTCATTA
1 GTGATGGTTGCTGCTCATTA
*
243803 GTGATGGTTGCTGCTCGTTA
1 GTGATGGTTGCTGCTCATTA
243823 GTGATGGTTGCT
1 GTGATGGTTGCT
243835 ACTATTTCGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.12, C:0.13, G:0.35, T:0.40
Consensus pattern (20 bp):
GTGATGGTTGCTGCTCATTA
Found at i:244695 original size:3 final size:3
Alignment explanation
Indices: 244677--244746 Score: 57
Period size: 3 Copynumber: 26.0 Consensus size: 3
244667 TAATTAATTA
* *
244677 ATT ATT ACT ATT -TT ATT ATT A-T ATT TTT ATT ATT ATT -TT ATT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
244721 -TT ATT -TT TTT ATT -TT -TT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
244747 CATGTTGAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
2 16 0.29
3 40 0.71
ACGTcount: A:0.24, C:0.01, G:0.00, T:0.74
Consensus pattern (3 bp):
ATT
Found at i:244696 original size:8 final size:8
Alignment explanation
Indices: 244685--244743 Score: 68
Period size: 8 Copynumber: 7.5 Consensus size: 8
244675 TAATTATTAC
244685 TATTTTAT
1 TATTTTAT
*
244693 TATTATAT
1 TATTTTAT
*
244701 TTTTATTAT
1 TATT-TTAT
244710 TATTTTAT
1 TATTTTAT
244718 T-TTTTAT
1 TATTTTAT
*
244725 TTTTTTAT
1 TATTTTAT
244733 T-TTTTAT
1 TATTTTAT
244740 TATT
1 TATT
244744 ATTCATGTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
7 14 0.32
8 24 0.55
9 6 0.14
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (8 bp):
TATTTTAT
Found at i:244696 original size:14 final size:14
Alignment explanation
Indices: 244677--244746 Score: 60
Period size: 13 Copynumber: 5.2 Consensus size: 14
244667 TAATTAATTA
244677 ATTATTACTA-TTTT
1 ATTATTA-TATTTTT
244691 ATTATTATATTTTT
1 ATTATTATATTTTT
244705 ATTATTAT-TTTATT
1 ATTATTATATTT-TT
*
244719 -TT-TTATTTTTTT
1 ATTATTATATTTTT
* *
244731 ATT-TTTTATTATT
1 ATTATTATATTTTT
244744 ATT
1 ATT
244747 CATGTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
12 6 0.12
13 22 0.45
14 21 0.43
ACGTcount: A:0.24, C:0.01, G:0.00, T:0.74
Consensus pattern (14 bp):
ATTATTATATTTTT
Found at i:244730 original size:15 final size:15
Alignment explanation
Indices: 244687--244743 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
244677 ATTATTACTA
*
244687 TTTTATTATTATATTT
1 TTTTATTATTTTA-TT
244703 TTATTATTATTTTATT
1 TT-TTATTATTTTATT
*
244719 TTTTATTTTTTTATT
1 TTTTATTATTTTATT
244734 TTTTATTATT
1 TTTTATTATT
244744 ATTCATGTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
15 21 0.57
16 6 0.16
17 10 0.27
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTATTATTTTATT
Found at i:247273 original size:21 final size:21
Alignment explanation
Indices: 247249--247292 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
247239 AGAAGAAGAG
247249 TTAGAAAAGAAAATAAGTGAA
1 TTAGAAAAGAAAATAAGTGAA
* *
247270 TTAGAAAAGAAGATAATTGAA
1 TTAGAAAAGAAAATAAGTGAA
247291 TT
1 TT
247293 GCAAGATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.18, T:0.25
Consensus pattern (21 bp):
TTAGAAAAGAAAATAAGTGAA
Found at i:247333 original size:21 final size:20
Alignment explanation
Indices: 247307--247357 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
247297 GATGTTAATA
247307 AAGAATTTGCTAATGAA-AAC
1 AAGAATTTGCTAA-GAAGAAC
*
247327 AACGAATTGGCTAAGAAGAAC
1 AA-GAATTTGCTAAGAAGAAC
*
247348 AAGAACTTGC
1 AAGAATTTGC
247358 ATGATTCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.20
Consensus pattern (20 bp):
AAGAATTTGCTAAGAAGAAC
Found at i:249227 original size:135 final size:135
Alignment explanation
Indices: 249075--249344 Score: 513
Period size: 135 Copynumber: 2.0 Consensus size: 135
249065 GAAGGTATCT
*
249075 TTTGTTGACAATGATGCAGAAATTTATGAAGAAAATTTAGAACAAGCATCACACAAGGAGCAAAC
1 TTTGTTGACAATGATGCAGAAATTTATGAAGAAAATGTAGAACAAGCATCACACAAGGAGCAAAC
*
249140 GGATAACATCCAAATTGAAAAAGCTCCAAAAAAAGTTGATGAACATGAGCCAACTCAAACCGAAA
66 GGATAACATCCAAATTGAAAAAGCTCCAAAAAAAGCTGATGAACATGAGCCAACTCAAACCGAAA
249205 GAAAA
131 GAAAA
*
249210 TTTGTTGACAATGATGCAGAAATTTATGAAGAAAATGTAGAACAAGCATCACACAAGGAGCAAGC
1 TTTGTTGACAATGATGCAGAAATTTATGAAGAAAATGTAGAACAAGCATCACACAAGGAGCAAAC
249275 GGATAACATCCAAATTGAAAAAGCTCCAAAAAAAGCTGATGAACATGAGCCAACTCAAACCGAAA
66 GGATAACATCCAAATTGAAAAAGCTCCAAAAAAAGCTGATGAACATGAGCCAACTCAAACCGAAA
249340 GAAAA
131 GAAAA
249345 CATCCGAGGG
Statistics
Matches: 132, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
135 132 1.00
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.18
Consensus pattern (135 bp):
TTTGTTGACAATGATGCAGAAATTTATGAAGAAAATGTAGAACAAGCATCACACAAGGAGCAAAC
GGATAACATCCAAATTGAAAAAGCTCCAAAAAAAGCTGATGAACATGAGCCAACTCAAACCGAAA
GAAAA
Found at i:250588 original size:13 final size:13
Alignment explanation
Indices: 250570--250595 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
250560 TACACCAAGT
250570 ATGTATCGATACA
1 ATGTATCGATACA
250583 ATGTATCGATACA
1 ATGTATCGATACA
250596 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:250593 original size:32 final size:33
Alignment explanation
Indices: 250552--250615 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
250542 TAGCCAAACT
* **
250552 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
250584 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
250616 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:254683 original size:15 final size:15
Alignment explanation
Indices: 254663--254693 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
254653 TAAAAATGTC
*
254663 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
254678 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
254693 C
1 C
254694 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:256942 original size:20 final size:20
Alignment explanation
Indices: 256899--256944 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
256889 AAATCTTTTG
256899 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
256920 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
256940 CAAAA
1 CAAAA
256945 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:259348 original size:13 final size:13
Alignment explanation
Indices: 259330--259355 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
259320 TACACCAAGT
259330 ATGTATCGATACA
1 ATGTATCGATACA
259343 ATGTATCGATACA
1 ATGTATCGATACA
259356 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:259353 original size:32 final size:33
Alignment explanation
Indices: 259312--259375 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
259302 TAGCCAAACT
* **
259312 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
259344 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
259376 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:263120 original size:34 final size:35
Alignment explanation
Indices: 263082--263148 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
263072 CCTTACAACA
263082 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
263116 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
263149 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:263645 original size:13 final size:13
Alignment explanation
Indices: 263627--263652 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
263617 CTATTTATGA
263627 TGTATCGATACAC
1 TGTATCGATACAC
263640 TGTATCGATACAC
1 TGTATCGATACAC
263653 ACAAATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:263737 original size:10 final size:10
Alignment explanation
Indices: 263713--263804 Score: 57
Period size: 10 Copynumber: 9.0 Consensus size: 10
263703 TAGTGATACG
263713 TGAACAGTG-
1 TGAACAGTGA
263722 TGAACAGTGA
1 TGAACAGTGA
263732 TGAACAGTGA
1 TGAACAGTGA
* *
263742 TGTATC-GATACA
1 TG-AACAG-T-GA
263754 TGAA-AGTGA
1 TGAACAGTGA
* *
263763 TGTATC-GATACA
1 TG-AACAG-T-GA
263775 TGAACAGTGA
1 TGAACAGTGA
*
263785 TGAATAGTGA
1 TGAACAGTGA
263795 TGAACAGTGA
1 TGAACAGTGA
263805 ACATGAGATT
Statistics
Matches: 63, Mismatches: 10, Indels: 19
0.68 0.11 0.21
Matches are distributed among these distances:
9 12 0.19
10 35 0.56
11 9 0.14
12 7 0.11
ACGTcount: A:0.38, C:0.10, G:0.27, T:0.25
Consensus pattern (10 bp):
TGAACAGTGA
Found at i:263786 original size:22 final size:22
Alignment explanation
Indices: 263731--263786 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
263721 GTGAACAGTG
263731 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
263753 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
263774 ATGAACAGTGATG
1 ATGAACAGTGATG
263787 AATAGTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:263944 original size:20 final size:20
Alignment explanation
Indices: 263881--263951 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
263871 GCCAATGACC
**
263881 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
263901 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
263921 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
263941 TGTATCGATAC
1 TGTATCGATAC
263952 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:264017 original size:21 final size:21
Alignment explanation
Indices: 263991--264031 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
263981 GTCAACCTTG
263991 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
264012 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
264032 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:268815 original size:34 final size:35
Alignment explanation
Indices: 268777--268843 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
268767 CCTTACAACA
268777 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
268811 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
268844 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:269340 original size:13 final size:13
Alignment explanation
Indices: 269322--269347 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
269312 CTATTTATGA
269322 TGTATCGATACAC
1 TGTATCGATACAC
269335 TGTATCGATACAC
1 TGTATCGATACAC
269348 ACAAATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:269432 original size:10 final size:10
Alignment explanation
Indices: 269408--269499 Score: 57
Period size: 10 Copynumber: 9.0 Consensus size: 10
269398 TAGTGATACG
269408 TGAACAGTG-
1 TGAACAGTGA
269417 TGAACAGTGA
1 TGAACAGTGA
269427 TGAACAGTGA
1 TGAACAGTGA
* *
269437 TGTATC-GATACA
1 TG-AACAG-T-GA
269449 TGAA-AGTGA
1 TGAACAGTGA
* *
269458 TGTATC-GATACA
1 TG-AACAG-T-GA
269470 TGAACAGTGA
1 TGAACAGTGA
*
269480 TGAATAGTGA
1 TGAACAGTGA
269490 TGAACAGTGA
1 TGAACAGTGA
269500 ACATGAGATT
Statistics
Matches: 63, Mismatches: 10, Indels: 19
0.68 0.11 0.21
Matches are distributed among these distances:
9 12 0.19
10 35 0.56
11 9 0.14
12 7 0.11
ACGTcount: A:0.38, C:0.10, G:0.27, T:0.25
Consensus pattern (10 bp):
TGAACAGTGA
Found at i:269481 original size:22 final size:22
Alignment explanation
Indices: 269426--269481 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
269416 GTGAACAGTG
269426 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
269448 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
269469 ATGAACAGTGATG
1 ATGAACAGTGATG
269482 AATAGTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:269639 original size:20 final size:20
Alignment explanation
Indices: 269576--269646 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
269566 GCCAATGACC
**
269576 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
269596 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
269616 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
269636 TGTATCGATAC
1 TGTATCGATAC
269647 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:269712 original size:21 final size:21
Alignment explanation
Indices: 269686--269726 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
269676 GTCAACCTTG
269686 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
269707 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
269727 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:270870 original size:21 final size:20
Alignment explanation
Indices: 270830--270868 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
270820 CTAAGTATAA
270830 ATATTTTTCAAGCATTAAATC
1 ATATTTTTCAA-CATTAAATC
270851 ATATGTTTTCAA-ATTAAA
1 ATAT-TTTTCAACATTAAA
270869 ATAACTCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 4 0.24
22 7 0.41
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (20 bp):
ATATTTTTCAACATTAAATC
Found at i:271116 original size:13 final size:13
Alignment explanation
Indices: 271098--271128 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
271088 CGATACATGC
*
271098 TACATTGTATCGA
1 TACATTGTATCAA
271111 TACATTGTATCAA
1 TACATTGTATCAA
271124 TACAT
1 TACAT
271129 AGTGAAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (13 bp):
TACATTGTATCAA
Found at i:273542 original size:5 final size:5
Alignment explanation
Indices: 273532--273556 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
273522 TTCAAAAACT
273532 TTTTG TTTTG TTTTG TTTTG TTTTG
1 TTTTG TTTTG TTTTG TTTTG TTTTG
273557 CTTTCTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80
Consensus pattern (5 bp):
TTTTG
Found at i:275276 original size:13 final size:14
Alignment explanation
Indices: 275250--275282 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
275240 TAATTTAAAT
275250 TTTAAATTTATTTA
1 TTTAAATTTATTTA
275264 TTTAAATTT-TTTA
1 TTTAAATTTATTTA
*
275277 TCTAAA
1 TTTAAA
275283 ACATCAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (14 bp):
TTTAAATTTATTTA
Found at i:275383 original size:20 final size:18
Alignment explanation
Indices: 275360--275405 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 18
275350 GGTAAATATT
275360 TAAAAT-ATATATAATTAAA
1 TAAAATAAT-TATAA-TAAA
275379 GTAAAATAATTATAATAAA
1 -TAAAATAATTATAATAAA
275398 TAAAATAA
1 TAAAATAA
275406 ATAAAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 4 0.16
20 11 0.44
21 2 0.08
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (18 bp):
TAAAATAATTATAATAAA
Found at i:275386 original size:29 final size:27
Alignment explanation
Indices: 275353--275421 Score: 66
Period size: 29 Copynumber: 2.4 Consensus size: 27
275343 ATTATAGGGT
* * *
275353 AAATATTTAAAATATATATAATTAAAGTA
1 AAATAATTAAAATAAATA-AAATAAA-TA
*
275382 AAATAATTATAATAAATAAAATAAATAA
1 AAATAATTAAAATAAATAAAATAAAT-A
275410 AAATAATATAAA
1 AAATAAT-TAAA
275422 TGTACTGTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
27 1 0.03
28 14 0.42
29 18 0.55
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (27 bp):
AAATAATTAAAATAAATAAAATAAATA
Found at i:275404 original size:9 final size:9
Alignment explanation
Indices: 275360--275421 Score: 52
Period size: 10 Copynumber: 6.4 Consensus size: 9
275350 GGTAAATATT
*
275360 TAAAATATA
1 TAAAATAAA
*
275369 TATAATTAAA
1 TA-AAATAAA
*
275379 GTAAAATAAT
1 -TAAAATAAA
*
275389 TATAATAAA
1 TAAAATAAA
275398 TAAAATAAA
1 TAAAATAAA
275407 TAAAAATAATA
1 T-AAAATAA-A
275418 TAAA
1 TAAA
275422 TGTACTGTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
9 18 0.43
10 20 0.48
11 4 0.10
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.31
Consensus pattern (9 bp):
TAAAATAAA
Found at i:277675 original size:11 final size:11
Alignment explanation
Indices: 277659--277690 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
277649 TGCCTAAATA
277659 CAACAAAAAAC
1 CAACAAAAAAC
*
277670 CAACAAAAAAG
1 CAACAAAAAAC
277681 CAACAAAAAA
1 CAACAAAAAA
277691 AAAGAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.75, C:0.22, G:0.03, T:0.00
Consensus pattern (11 bp):
CAACAAAAAAC
Done.