genome.fa.s1102.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1102
Parameters: 2 7 7 80 10 50 1000
Length:  83758

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335--396	26	2.4	26	79	10	74	64	1	3	30	1.19
612--654	13	2.9	14	80	19	52	62	0	37	0	0.95
612--656	14	3.2	13	84	15	54	64	0	35	0	0.94
737--765	15	1.9	15	100	0	58	27	0	0	72	0.85
3485--3514	2	15.0	2	100	0	60	50	0	0	50	1.00
3513--3697	34	5.5	34	85	0	246	26	7	25	40	1.81
4006--4068	19	3.3	19	90	0	90	28	17	19	34	1.94
8134--8318	34	5.5	34	85	0	246	26	7	25	40	1.81
8600--8631	2	16.0	2	100	0	64	50	0	0	50	1.00
9020--9099	20	3.8	21	77	14	76	32	0	3	63	1.12
9933--10039	46	2.3	46	96	0	196	29	8	7	54	1.58
10082--10133	26	2.0	27	92	3	88	34	0	1	63	1.06
10095--10174	26	2.9	27	80	14	67	38	0	1	60	1.05
10101--10174	30	2.5	30	83	12	84	39	0	1	59	1.06
10567--10655	36	2.6	33	83	13	117	33	2	12	51	1.52
10581--10649	36	1.9	36	94	5	122	30	2	13	53	1.54
10562--10676	33	3.4	33	80	7	113	33	2	13	51	1.54
10690--10742	17	2.9	18	77	8	63	79	0	20	0	0.74
10720--10754	12	3.0	12	91	4	54	82	0	14	2	0.77
17952--18026	20	3.8	20	83	0	87	41	10	13	34	1.79
20768--20849	39	2.1	39	84	4	103	41	10	3	43	1.57
21290--21389	16	5.9	17	70	23	61	38	1	0	61	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21284--21393	37	2.9	37	77	9	114	38	0	0	60	1.03
21284--21348	27	2.4	28	78	2	78	36	1	0	61	1.05
21328--21394	5	14.0	5	72	13	52	35	1	0	62	1.04
24929--24962	2	17.5	2	87	6	52	50	2	0	47	1.16
27572--28552	326	3.0	326	99	0	1928	35	25	11	27	1.90
31911--31964	3	18.0	3	100	0	108	33	0	0	66	0.92
37949--37988	21	2.0	20	90	5	62	42	0	0	57	0.98
40268--40300	2	16.5	2	100	0	66	51	0	0	48	1.00
42812--42867	29	2.0	28	83	13	71	50	0	0	50	1.00
43687--43734	23	2.2	22	92	7	80	64	0	0	35	0.94
43699--43733	11	3.0	12	83	8	54	65	0	0	34	0.93
43750--43785	18	1.9	19	94	5	65	61	0	0	38	0.96
44448--44668	34	6.5	33	81	9	257	40	26	7	25	1.82
44450--44668	68	3.2	67	85	3	287	40	26	7	25	1.82
44448--44668	102	2.2	101	90	1	361	40	26	7	25	1.82
48734--48796	19	3.3	19	86	0	81	36	17	17	28	1.93
49094--49313	34	6.5	33	81	9	255	40	26	7	25	1.82
49096--49313	68	3.2	67	84	3	285	40	26	7	25	1.82
49094--49313	102	2.2	101	90	1	359	40	26	7	25	1.82
49846--49894	11	4.2	12	79	10	57	53	0	0	46	1.00
49849--49897	22	2.1	24	85	7	66	55	0	0	44	0.99
49816--49954	68	2.1	66	79	11	149	50	0	2	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50187--50236	20	2.5	20	73	0	55	62	0	0	38	0.96
50291--50361	21	3.5	20	71	11	65	61	0	0	38	0.96
50277--50354	35	2.1	35	80	15	86	62	0	0	37	0.95
50275--50348	16	4.3	16	75	13	67	63	0	0	36	0.95
50304--50348	19	2.4	18	78	10	54	66	0	0	33	0.92
50302--50361	19	3.3	18	72	13	52	63	0	0	36	0.95
51213--51251	19	2.1	19	95	0	69	17	17	10	53	1.71
51985--52022	6	6.3	6	87	0	58	42	0	0	57	0.98
53462--53507	2	23.5	2	87	12	69	45	0	2	52	1.13
57600--57657	6	8.8	6	83	12	53	41	0	0	58	0.98
58387--58422	17	2.2	16	90	9	56	52	0	0	47	1.00
58582--58618	19	1.9	19	88	0	56	37	0	5	56	1.22
60776--60834	30	1.9	31	82	3	75	25	5	10	59	1.50
60844--60890	19	2.4	20	89	7	78	55	0	10	34	1.35
61166--61198	17	1.9	17	88	11	50	69	3	0	27	1.03
62347--62392	23	2.0	24	82	4	58	41	0	2	56	1.11
63750--63834	29	3.0	28	81	13	84	45	0	3	50	1.18
64855--64898	20	2.1	20	87	8	61	68	0	0	31	0.90
64853--64899	18	2.3	22	79	13	57	65	0	0	34	0.93
64934--64973	16	2.6	15	88	4	62	2	12	0	85	0.71
64934--64972	5	7.8	5	88	8	53	2	12	0	84	0.72
64934--64975	11	3.9	11	81	3	50	2	14	0	83	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65392--65435	4	11.2	4	86	13	65	25	0	0	75	0.81
65391--65446	8	6.1	9	87	12	71	23	1	1	73	1.03
68860--68896	17	2.1	18	95	5	67	24	5	29	40	1.77
73560--73978	78	5.4	77	78	3	381	38	17	13	30	1.89
73560--73981	156	2.7	155	81	2	479	38	18	13	29	1.89
74130--74241	59	1.9	59	81	1	134	48	10	10	30	1.72
75909--75949	21	2.0	21	85	9	57	39	12	9	39	1.76
75989--76059	20	3.6	19	77	7	70	40	16	12	29	1.86
76136--76166	10	3.1	10	90	0	53	22	29	6	41	1.78
76154--76210	22	2.6	22	91	0	96	24	24	12	38	1.90
76300--76325	13	2.0	13	100	0	52	30	15	23	30	1.95
76804--76870	37	1.9	35	88	11	102	32	11	25	29	1.92
78385--78545	84	1.9	84	82	5	200	53	3	18	25	1.59
79682--79719	18	2.1	18	90	0	58	21	5	5	68	1.29
80062--80086	13	1.9	13	100	0	50	36	16	16	32	1.90
80885--80952	30	2.2	32	89	5	104	29	4	29	36	1.77
81680--81720	21	2.0	21	85	9	57	39	12	9	39	1.76
81760--81830	20	3.6	19	77	7	70	40	16	12	29	1.86
81907--81937	10	3.1	10	90	0	53	22	29	6	41	1.78
81925--81981	22	2.6	22	91	0	96	24	24	12	38	1.90
82071--82096	13	2.0	13	100	0	52	30	15	23	30	1.95
82575--82641	37	1.9	35	88	11	102	32	11	25	29	1.92

Tables:   1

The End!