genome.fa.s1106.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1106
Parameters: 2 7 7 80 10 50 1000
Length:  101264

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595--666	20	3.6	20	82	0	99	31	13	12	41	1.82
2965--3041	20	3.9	20	76	10	68	33	14	11	40	1.82
3360--3684	27	11.8	27	82	5	330	24	30	13	31	1.94
3360--3664	55	5.5	55	86	4	391	24	30	13	31	1.94
3390--3664	82	3.3	82	86	4	392	24	31	13	30	1.94
3677--4917	28	42.8	29	85	5	1468	29	30	16	23	1.96
3356--4917	28	54.4	29	83	7	1397	28	30	15	25	1.96
3677--4930	230	5.4	229	87	4	1718	29	30	16	23	1.96
3748--4930	464	2.5	464	91	5	1815	29	30	16	24	1.96
5005--5125	46	2.7	46	88	1	172	21	27	19	31	1.98
17857--17909	20	2.7	20	91	2	81	30	11	20	37	1.88
17990--18014	13	1.9	13	100	0	50	36	16	16	32	1.90
24755--24807	19	2.7	20	88	8	81	28	11	15	45	1.80
24858--24913	20	2.8	20	89	5	78	28	17	16	37	1.91
27050--27121	20	3.7	20	92	1	110	27	12	22	37	1.90
29936--29960	10	2.5	10	100	0	50	44	8	0	48	1.32
31843--31886	22	2.0	23	82	13	56	31	0	13	54	1.39
32182--32544	164	2.3	161	82	7	413	25	12	20	41	1.87
35155--35189	12	2.9	12	100	0	70	40	25	8	25	1.84
36505--36542	18	2.1	18	85	9	51	76	0	15	7	1.01
38248--38462	60	3.6	59	81	3	209	19	14	19	46	1.83
39571--39679	40	2.7	39	72	9	103	18	22	15	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39629--39761	40	3.3	39	75	12	126	18	23	15	43	1.87
39571--40346	81	9.6	81	76	6	569	19	23	15	41	1.89
39812--40540	40	18.1	39	68	13	280	19	24	14	41	1.89
39810--39981	41	4.2	41	66	17	108	20	25	12	41	1.87
39571--40346	162	4.8	163	78	3	685	19	23	15	41	1.89
39571--40345	242	3.2	243	78	5	568	19	24	15	41	1.89
40219--40694	41	11.8	42	69	12	207	18	25	13	42	1.87
40230--40464	118	2.0	119	84	4	305	19	24	13	43	1.86
40349--40648	81	3.7	81	78	5	306	19	26	13	41	1.87
40642--40774	70	1.9	70	81	3	160	16	28	16	38	1.91
40727--40839	40	2.8	41	81	8	131	17	24	16	40	1.90
40715--40839	41	3.1	41	79	6	155	16	25	16	41	1.88
40835--41027	86	2.2	86	81	10	196	19	23	16	40	1.91
40853--40993	43	3.3	43	75	4	124	20	25	14	39	1.91
41025--41106	41	2.0	41	87	0	119	21	25	15	36	1.94
42209--42767	153	3.6	154	78	9	473	33	10	9	47	1.69
46317--46445	52	2.5	52	97	0	240	28	18	18	34	1.95
46454--46478	13	1.9	13	100	0	50	36	16	16	32	1.90
46517--46618	19	6.1	17	72	27	85	36	16	11	35	1.86
46540--46596	13	3.9	13	76	24	60	33	17	14	35	1.90
46520--46616	32	3.0	32	95	1	167	35	16	12	36	1.86
52697--52726	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54624--54688	33	2.0	31	82	11	78	49	0	4	46	1.22
55435--55513	20	3.8	20	80	12	79	34	15	11	39	1.83
57179--57204	13	2.0	13	100	0	52	30	15	15	38	1.88
57159--57222	32	2.0	33	90	3	103	28	14	18	39	1.90
57159--57229	19	4.0	18	72	25	62	26	12	21	39	1.89
59046--59271	94	2.4	95	86	4	305	30	22	13	34	1.92
60349--60400	23	2.3	23	83	12	63	30	3	1	63	1.23
60431--60464	16	2.2	15	89	5	50	38	0	2	58	1.13
60848--60894	22	2.2	22	88	3	69	61	2	0	36	1.08
61213--61325	16	7.4	16	70	20	71	53	2	0	44	1.14
61252--61308	17	3.4	17	85	4	71	54	0	0	45	0.99
63534--63573	20	2.0	20	95	0	71	42	2	15	40	1.60
68812--68853	19	2.2	20	86	4	59	38	0	4	57	1.20
68921--68963	21	2.0	21	81	0	50	39	2	2	55	1.25
69765--69807	23	1.9	23	85	4	61	34	2	2	60	1.22
69827--69874	25	1.9	25	86	0	69	56	4	6	33	1.44
70003--70033	2	15.5	2	100	0	62	48	0	0	51	1.00
70656--70680	3	8.3	3	100	0	50	68	0	0	32	0.90
71212--71261	24	2.0	25	88	3	75	52	0	0	48	1.00
72287--72330	21	2.1	21	82	0	52	40	4	15	38	1.68
75706--75855	75	2.0	75	100	0	300	44	13	12	30	1.80
77670--78121	75	6.0	75	93	0	715	39	21	7	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78396--78448	27	2.0	27	84	0	70	30	0	35	33	1.58
83029--83054	6	4.3	6	100	0	52	19	30	0	50	1.48
83152--83191	15	2.7	14	88	7	53	42	25	2	30	1.68
83344--83389	22	2.1	22	84	8	58	73	2	0	23	0.94
83436--83478	21	2.0	21	86	0	59	41	0	32	25	1.56
90477--90504	13	2.2	13	100	0	56	39	17	14	28	1.89
90459--90524	33	2.0	33	88	5	98	39	15	15	30	1.88
91375--91703	49	6.7	49	76	7	224	33	16	25	24	1.96
91465--91708	49	5.0	49	78	8	248	34	16	24	24	1.96
91375--91708	101	3.4	95	76	10	273	33	16	25	24	1.96
91563--91702	43	3.1	44	83	7	174	34	17	25	22	1.96
91720--91879	28	5.7	28	86	8	184	18	16	32	32	1.93
91720--91879	57	2.8	56	84	11	195	18	16	32	32	1.93
93286--93344	14	4.1	15	80	12	63	0	1	11	86	0.65
93296--93345	10	5.3	10	79	13	61	0	2	12	86	0.67
93286--93345	27	2.3	27	85	2	86	0	1	13	85	0.69
93286--93341	17	3.4	17	85	11	64	0	1	12	85	0.67
93301--93342	17	2.4	18	92	4	68	0	2	9	88	0.61
98479--98779	152	2.0	152	97	0	566	28	19	19	32	1.96

Tables:   1

The End!