genome.fa.s1107.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1107
Parameters: 2 7 7 80 10 50 1000
Length:  72560

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3611--3647	3	12.3	3	94	0	65	64	2	0	32	1.07
4031--4081	23	2.2	22	80	10	57	76	5	3	13	1.11
4717--4741	12	2.1	12	100	0	50	0	24	0	76	0.80
13077--13211	43	3.2	42	66	19	111	29	20	17	32	1.95
13042--13168	39	3.2	39	66	20	107	32	17	16	33	1.92
13038--13393	82	4.4	82	76	12	376	31	18	16	32	1.94
13123--13432	160	1.9	160	93	0	530	32	19	16	31	1.94
17994--18044	16	3.1	16	77	8	57	49	0	9	41	1.36
19719--19748	15	2.0	15	93	0	51	40	16	6	36	1.75
21810--22126	159	2.0	161	86	4	453	33	16	15	34	1.91
23494--23533	11	3.5	11	86	10	53	0	27	0	72	0.85
23494--23529	18	1.9	19	88	5	56	0	30	0	69	0.89
23494--23533	12	3.4	12	86	3	55	0	27	0	72	0.85
26618--26699	43	1.9	43	85	5	112	62	9	8	19	1.52
27958--28081	52	2.4	52	80	1	142	37	8	25	28	1.86
28016--28593	173	3.4	168	79	5	556	31	11	26	30	1.92
29925--29976	19	2.7	20	82	11	63	36	13	15	34	1.87
30705--30772	23	3.2	23	60	23	58	32	14	10	42	1.80
30707--30795	40	2.2	40	95	0	160	35	16	10	37	1.83
34457--34514	19	3.0	20	85	7	84	34	17	15	32	1.91
34498--34522	13	1.9	13	100	0	50	32	16	16	36	1.90
36857--36896	21	2.0	21	90	5	64	47	0	20	32	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43193--43261	33	2.1	33	83	5	86	37	20	13	28	1.90
43290--43347	19	3.0	20	82	7	75	34	15	15	34	1.89
49017--49041	13	1.9	13	100	0	50	36	16	16	32	1.90
49089--49156	32	2.1	32	91	0	109	36	16	10	36	1.82
49113--49137	13	1.9	13	100	0	50	32	16	16	36	1.90
49094--49157	19	3.7	18	72	23	57	37	15	10	35	1.83
49194--49236	21	2.0	22	90	4	70	39	13	13	32	1.85
49903--50467	49	11.9	48	84	8	705	30	18	25	25	1.98
49901--50468	92	6.1	91	86	7	669	31	18	25	25	1.98
50509--50639	34	3.9	34	96	0	244	34	15	32	18	1.92
50611--50752	31	4.8	29	85	6	135	26	16	31	24	1.97
50634--50787	61	2.6	60	83	11	192	29	16	31	23	1.96
50634--50788	31	5.1	30	84	10	174	29	16	31	23	1.96
52007--52044	12	2.9	13	77	14	51	0	0	18	81	0.69
57197--57236	20	2.0	21	85	5	55	52	22	2	22	1.59
62414--62444	15	2.1	15	93	0	53	48	16	22	12	1.80
64515--64553	13	3.0	13	96	0	69	30	17	15	35	1.91
66346--66444	37	2.9	34	88	11	157	24	3	24	48	1.65
67065--67137	20	3.6	20	81	3	101	36	13	17	31	1.89
67082--67158	21	3.7	21	79	6	95	44	11	15	28	1.82
67065--67158	41	2.3	41	96	3	172	40	12	17	29	1.86
67197--67222	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69226--69266	21	2.0	21	85	9	57	41	9	7	41	1.66
71096--71134	9	4.3	9	86	0	51	43	0	30	25	1.55
71098--71132	3	11.7	3	87	0	52	40	0	31	28	1.57

Tables:   1

The End!