genome.fa.s1110.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1110
Parameters: 2 7 7 80 10 50 1000
Length:  30442

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2626--2690	20	3.8	18	76	23	77	33	18	12	35	1.88
2644--2669	13	2.0	13	100	0	52	30	15	15	38	1.88
2625--2689	31	2.0	33	94	5	116	33	18	12	35	1.88
4606--4673	7	9.7	7	73	21	54	36	2	0	60	1.12
4624--4729	5	20.8	5	69	18	67	38	2	0	58	1.13
4616--4737	17	6.8	17	69	25	74	38	2	0	59	1.11
4617--4702	40	2.2	40	81	14	106	39	1	0	59	1.05
4619--4729	50	2.3	48	73	18	113	37	2	0	59	1.12
5061--5105	16	2.9	16	90	3	65	44	0	2	53	1.13
5199--5242	22	2.1	21	83	8	54	52	2	0	45	1.13
5544--5589	23	2.0	23	83	8	58	63	0	0	36	0.95
6241--6308	23	3.0	23	83	12	88	51	1	2	44	1.25
6338--6384	23	2.0	23	95	0	85	25	21	6	46	1.74
7365--7390	2	13.0	2	100	0	52	50	0	0	50	1.00
8827--8862	18	1.9	19	88	5	56	38	2	8	50	1.47
9610--9685	39	1.9	39	82	10	93	52	0	2	44	1.14
9640--9718	31	2.5	31	84	9	108	51	0	2	45	1.14
9650--9725	32	2.5	31	85	8	102	47	0	2	50	1.15
11637--11827	67	2.8	67	78	7	215	23	13	16	46	1.82
17336--17469	12	9.9	14	71	18	63	60	0	1	37	1.11
17335--17417	19	4.4	20	82	8	88	62	0	0	37	0.95
17335--17471	7	21.3	7	67	25	72	59	0	1	37	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17335--17471	27	5.1	26	66	25	79	59	0	1	37	1.11
17499--17547	24	2.1	23	88	3	71	65	4	4	26	1.29
17578--17939	52	7.1	49	77	12	288	51	5	2	40	1.36
17578--17891	50	6.2	49	79	10	289	52	5	1	40	1.35
18132--18205	22	3.4	23	85	9	102	35	5	12	47	1.64
18279--18335	22	2.6	22	78	10	62	42	10	3	43	1.56
18471--18513	22	2.0	20	86	8	59	34	9	4	51	1.55
18597--18901	43	6.3	53	71	19	190	40	2	5	51	1.38
18597--19274	52	13.9	51	68	19	251	40	3	4	51	1.39
18771--18843	23	3.2	23	67	15	62	42	0	2	54	1.14
18637--19033	135	2.9	134	79	9	360	39	2	5	53	1.34
18809--18938	43	3.1	42	83	7	140	41	0	4	53	1.21
18924--18991	21	3.4	19	71	15	57	38	1	5	54	1.34
18924--18998	40	1.9	39	89	5	107	41	1	5	52	1.33
18957--19268	50	6.1	50	74	12	240	39	4	4	51	1.42
19507--19552	2	23.0	2	90	0	74	45	0	4	50	1.21
19507--19556	10	5.0	10	95	0	82	44	0	6	50	1.26
19757--19831	20	3.8	20	78	0	87	34	13	12	40	1.81
19757--19834	40	2.0	39	87	2	111	34	12	12	39	1.82
20741--20793	19	2.5	23	79	20	78	16	11	9	62	1.54
20749--20794	20	2.3	20	92	3	76	17	8	8	65	1.45
20761--20800	20	2.0	20	85	0	53	20	12	10	57	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26929--26972	15	2.8	17	80	16	58	65	11	18	4	1.40
28280--29812	27	57.0	27	86	6	1928	23	34	14	27	1.94
28280--29812	54	28.5	54	88	5	2252	23	34	14	27	1.94
28280--29812	81	19.0	81	89	4	2252	23	34	14	27	1.94
29254--29286	16	2.1	16	94	5	59	33	27	6	33	1.81
29227--29314	43	2.0	43	84	4	115	28	28	10	32	1.90
29200--29342	71	2.0	70	86	4	198	27	30	11	30	1.92
29796--30346	32	17.2	32	92	2	856	29	33	19	18	1.95
29796--30359	127	4.4	128	91	2	848	29	33	19	18	1.95

Tables:   1

The End!