genome.fa.s1114.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1114
Parameters: 2 7 7 80 10 50 1000
Length:  70086

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4348--4384	13	2.8	13	95	0	65	32	18	16	32	1.93
4497--4542	21	2.2	20	81	11	58	32	19	4	43	1.71
5971--6013	22	2.0	20	91	8	68	11	9	18	60	1.57
12299--12323	13	1.9	13	100	0	50	32	16	16	36	1.90
12390--12415	13	2.0	13	100	0	52	38	15	15	30	1.88
19591--19616	13	2.0	13	100	0	52	38	15	15	30	1.88
21146--21200	27	2.2	26	83	9	69	5	14	0	80	0.89
21168--21210	17	2.4	18	92	3	70	4	16	0	79	0.90
24671--25238	154	3.7	154	81	4	475	38	20	18	23	1.94
24672--25272	151	3.9	149	80	6	431	38	19	17	23	1.93
26646--26697	19	2.7	19	80	14	61	5	15	0	78	0.92
26833--26868	14	2.6	14	95	0	63	11	11	5	72	1.28
37103--37503	202	2.0	203	89	2	608	43	14	14	27	1.85
39240--39283	10	4.1	11	85	11	56	79	0	18	2	0.83
39245--39283	21	1.9	20	89	5	60	79	0	20	0	0.73
39248--39286	12	3.3	12	85	7	53	76	0	23	0	0.78
41011--41238	97	2.4	97	91	2	368	28	31	12	27	1.93
41011--41268	97	2.7	95	76	18	262	29	29	11	30	1.92
43149--43771	334	1.9	333	83	3	813	30	10	8	50	1.66
43139--43905	167	4.6	167	81	4	726	29	10	8	50	1.66
45226--45541	164	1.9	163	85	3	429	37	10	10	40	1.74
45822--45865	21	2.0	21	82	4	52	36	11	11	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48317--48610	52	5.6	51	72	11	263	28	26	12	32	1.93
48317--48502	51	3.6	51	82	7	232	29	25	11	33	1.91
48484--48558	27	2.7	27	83	6	89	25	32	18	24	1.97
48511--48690	79	2.3	79	86	2	245	27	27	15	29	1.96
48624--48791	51	3.3	51	83	5	151	29	27	12	30	1.93
48542--48901	181	2.0	184	83	4	469	29	25	12	32	1.92
48723--48878	79	2.0	80	85	5	217	27	25	14	32	1.94
49996--50029	3	11.3	3	100	0	68	67	0	0	32	0.91
50822--50847	13	2.0	13	100	0	52	30	15	15	38	1.88
50885--50992	20	5.8	19	71	16	84	32	13	11	42	1.80
50903--50932	13	2.3	13	94	0	51	33	16	10	40	1.82
50888--50952	33	2.0	33	90	6	105	29	16	12	41	1.85
53281--53468	51	3.6	51	82	5	243	29	25	11	33	1.91
53448--53522	27	2.7	27	83	6	89	25	32	18	24	1.97
53475--53653	79	2.3	78	86	4	243	27	27	14	29	1.95
53280--53573	51	5.6	51	70	14	233	28	26	12	32	1.92
53586--53753	51	3.3	50	81	7	151	29	27	12	30	1.93
53624--53753	50	2.5	50	87	6	172	28	28	11	31	1.92
53507--53863	180	2.0	182	83	5	454	29	25	11	33	1.91
54958--54982	3	8.3	3	100	0	50	68	0	0	32	0.90
55773--55798	13	2.0	13	100	0	52	30	15	15	38	1.88
55836--55943	20	5.8	19	71	16	84	32	13	11	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55854--55883	13	2.3	13	94	0	51	33	16	10	40	1.82
55839--55903	33	2.0	33	90	6	105	29	16	12	41	1.85
57864--57894	12	2.6	12	100	0	62	93	6	0	0	0.35
58297--58484	53	3.6	51	75	16	156	27	25	11	35	1.91
60881--60906	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1

The End!