genome.fa.s1115.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1115
Parameters: 2 7 7 80 10 50 1000
Length:  495024

Tables:   1   2   

This is table  2  of  2  ( 164 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434009--434051	22	2.0	22	90	0	68	41	11	9	37	1.74
434259--434315	22	2.6	22	85	0	78	36	8	10	43	1.70
434582--434628	22	2.1	22	88	0	67	40	6	6	46	1.55
434704--434816	43	2.6	43	77	9	111	41	2	4	51	1.36
434758--435456	52	13.0	52	73	11	491	39	2	4	53	1.33
435037--435187	50	3.1	50	84	2	128	43	2	4	49	1.37
438047--438131	41	2.1	41	97	0	161	52	7	14	25	1.66
438053--438142	41	2.2	41	89	2	135	53	6	13	26	1.64
438165--438193	2	14.5	2	100	0	58	51	0	0	48	1.00
442808--442855	18	2.6	17	78	12	51	47	8	22	20	1.77
443716--443804	44	2.0	43	84	2	115	39	11	16	32	1.84
449139--449170	13	2.5	13	94	0	55	31	15	12	40	1.85
449154--449211	19	3.0	19	89	2	89	34	17	15	32	1.91
449260--449308	13	4.2	13	75	24	63	32	12	18	36	1.88
449239--449308	33	2.1	34	89	7	108	32	12	20	34	1.90
452431--452503	27	2.7	27	87	6	94	23	31	21	23	1.98
452486--452707	51	4.3	52	76	7	184	29	22	12	35	1.91
459540--459573	17	2.0	17	88	0	50	50	14	26	8	1.72
464870--464919	12	4.2	12	82	14	50	86	6	8	0	0.72
464858--464936	18	4.4	17	75	13	70	83	5	11	0	0.79
464870--464936	8	8.5	8	76	12	50	83	4	11	0	0.78
464870--464904	11	3.1	11	88	8	52	88	2	8	0	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464859--464937	28	2.9	28	80	12	92	82	6	11	0	0.84
464859--464936	36	2.1	38	81	11	99	83	5	11	0	0.80
465898--466646	55	13.4	55	85	8	892	27	29	19	23	1.98
465904--466630	110	6.5	110	85	7	982	27	29	19	22	1.98
467472--467539	19	3.9	19	78	21	85	35	11	14	38	1.83
467493--467517	13	1.9	13	100	0	50	36	16	16	32	1.90
467474--467536	32	2.0	32	96	0	117	34	12	15	36	1.86
467579--467604	13	2.0	13	100	0	52	30	15	15	38	1.88
467559--467625	33	2.0	33	88	0	98	25	14	16	43	1.86
476372--476423	20	2.6	20	100	0	104	30	23	11	34	1.90
478717--478781	32	2.0	33	87	3	96	26	13	15	44	1.84
478746--478802	19	2.9	19	84	2	78	31	15	17	35	1.92
478832--478886	20	2.7	21	86	11	78	34	10	20	34	1.87
479732--479800	31	2.2	31	89	0	111	43	17	24	14	1.86
480333--480451	31	3.9	30	80	7	132	20	37	18	23	1.94
480329--480449	62	2.0	62	85	6	165	20	37	18	23	1.94
480446--480558	24	4.8	24	78	6	133	36	35	19	8	1.83
480459--480525	21	3.0	21	76	6	71	38	34	17	8	1.82
480459--480558	45	2.2	45	87	5	137	37	35	19	9	1.83
481456--481487	16	2.0	16	93	0	55	78	3	0	18	0.89
485928--485972	22	2.0	23	82	4	56	33	20	2	44	1.63
494002--494833	42	20.0	42	81	4	763	15	29	17	37	1.90

Tables:   1   2

The End!