Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1116
Parameters: 2 7 7 80 10 50 1000
Length:  35198

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5034--5059
13
2.0
13
100
0
52
7
15
15
61
1.55
5128--5166
2
19.5
2
100
0
78
48
0
0
51
1.00
7332--7358
2
13.5
2
100
0
54
51
0
0
48
1.00
14089--14139
16
3.3
15
81
13
59
47
0
0
52
1.00
14921--14955
17
2.0
17
88
5
52
40
2
0
57
1.14
18617--18655
22
1.9
20
85
15
53
41
10
5
43
1.61
27249--27303
19
2.9
19
97
0
101
34
10
14
40
1.81
27343--27401
13
5.0
13
73
23
67
28
15
16
38
1.89
27343--27422
33
2.4
33
100
0
160
27
15
17
40
1.89
27355--27421
20
3.7
20
74
25
85
26
14
17
40
1.89
28893--29392
55
9.0
55
87
5
628
27
29
20
23
1.99
32657--33046
52
7.4
52
72
14
208
30
25
12
31
1.92
32657--33046
51
7.4
50
70
15
153
30
25
12
31
1.92
32769--32841
27
2.7
27
86
2
92
23
32
21
21
1.98
32826--33047
106
2.1
103
82
4
266
30
25
11
32
1.91
33030--33104
28
2.7
28
85
4
89
24
34
18
22
1.96
32655--33157
265
1.9
262
88
3
758
29
26
13
31
1.94

Tables:   1

The End!