Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1117
Parameters: 2 7 7 80 10 50 1000
Length:  20513

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1268--1314
24
2.0
24
83
8
60
61
0
0
38
0.96
2862--2891
9
3.2
9
90
9
51
50
0
0
50
1.00
3225--3263
2
19.5
2
100
0
78
51
0
0
48
1.00
3385--3417
16
2.1
16
88
5
50
33
6
6
54
1.50
4067--4111
15
2.9
15
86
3
54
46
22
2
28
1.63
5697--5735
19
2.0
19
85
5
51
74
5
2
17
1.12
5708--5745
19
2.0
19
89
0
58
73
0
0
26
0.83
6062--6161
52
1.9
52
87
4
148
29
11
31
29
1.91
6758--6803
2
23.0
2
100
0
92
50
0
0
50
1.00
8637--8693
25
2.2
26
84
3
71
50
0
0
49
1.00
8630--8700
25
2.6
28
74
17
69
50
0
0
49
1.00
9446--9477
6
5.5
6
96
3
57
87
12
0
0
0.54
9971--9996
4
6.5
4
100
0
52
23
0
0
76
0.78
10629--10671
22
2.0
22
81
9
52
67
16
2
13
1.33
11187--11285
16
6.2
16
72
9
67
51
0
1
47
1.07
11623--11697
31
2.9
24
71
25
71
50
1
4
44
1.29
11623--11700
24
3.0
25
70
22
70
51
1
3
43
1.28
11623--11700
28
2.8
28
68
12
72
51
1
3
43
1.28
13188--13225
16
2.4
16
86
8
51
50
7
7
34
1.61

Tables:   1

The End!