Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1118
Parameters: 2 7 7 80 10 50 1000
Length:  54781

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2059--2131
27
2.7
27
87
6
94
23
34
21
20
1.97
2114--2284
51
3.3
51
79
4
198
29
26
11
32
1.92
2267--2348
28
2.9
28
82
7
96
24
31
17
26
1.97
8384--8629
122
2.0
122
100
0
492
39
15
15
29
1.88
10480--10549
35
2.1
34
89
10
110
50
8
5
35
1.57
10882--10918
20
1.9
19
89
10
58
45
0
0
54
1.00
11877--11918
21
2.0
21
86
9
59
47
0
0
52
1.00
12404--12442
19
2.0
20
90
5
62
38
12
0
48
1.42
12553--12578
2
13.0
2
100
0
52
50
0
0
50
1.00
13541--13569
2
14.5
2
100
0
58
48
0
0
51
1.00
18488--18561
16
4.8
16
75
9
73
54
0
1
44
1.08
18496--18553
30
1.9
30
89
0
89
55
0
1
43
1.10
20573--20634
10
6.1
11
73
19
55
37
0
0
62
0.95
20580--20660
40
2.1
36
86
13
110
39
0
0
60
0.97
20580--20665
19
4.2
22
72
16
62
40
0
0
59
0.97
21091--21140
20
2.5
20
78
15
57
48
4
0
48
1.20
21392--21449
31
1.9
30
82
3
71
36
10
1
51
1.46
21563--21602
18
2.2
19
90
4
64
65
0
0
35
0.93
22752--22800
26
1.9
26
87
4
73
59
0
0
40
0.98
22968--23007
20
2.0
20
85
9
55
50
0
0
50
1.00
22959--23029
18
3.9
18
73
14
56
45
0
0
54
0.99
22944--23073
31
4.0
32
72
16
97
43
0
0
55
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22949--23126
8
21.4
8
66
22
57
41
0
0
58
1.02
22967--23084
51
2.3
51
77
12
125
44
0
0
55
1.05
26390--26476
22
3.9
23
71
18
76
42
4
4
48
1.44
32295--32358
30
2.1
32
88
11
98
70
3
20
6
1.23
32924--33038
42
2.7
43
84
1
151
41
6
11
40
1.68
32928--33102
43
4.1
43
83
2
183
38
10
12
38
1.77
35109--35169
15
3.7
17
76
20
67
37
1
0
60
1.07
35463--35568
25
4.2
24
73
14
72
53
1
0
44
1.11
35523--35578
25
2.2
25
87
6
78
57
3
1
37
1.27
39948--40140
100
1.9
99
83
5
246
43
9
17
29
1.81
42486--42615
52
2.5
51
82
7
138
44
13
12
29
1.81
42686--42731
21
2.2
21
85
11
60
32
15
8
43
1.77
45951--46036
20
4.3
20
97
2
165
39
9
19
31
1.84
45951--46036
39
2.2
40
95
4
165
39
9
19
31
1.84
46114--46163
20
2.4
21
83
3
66
32
10
14
44
1.78
47142--47676
154
3.5
154
86
3
666
42
18
13
25
1.87
47580--47810
119
1.9
119
85
3
322
41
19
13
25
1.88
47967--48661
166
4.2
167
82
4
775
43
13
10
33
1.77
47967--48661
331
2.1
333
84
3
891
43
13
10
33
1.77
48932--48987
19
3.2
19
71
23
68
33
17
10
37
1.85
49725--49758
16
2.1
16
88
0
50
73
0
2
23
0.97
50411--50436
12
2.2
12
100
0
52
76
0
23
0
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50673--50766
46
2.0
46
100
0
188
40
6
23
29
1.79

Tables:   1

The End!