Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1124
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105560
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Found at i:1546 original size:20 final size:21
Alignment explanation
Indices: 1507--1551 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
1497 ATTTGCAAGT
*
1507 TGAAATAAAGAAGTTGGCTAA
1 TGAAATAAAGAAGTTAGCTAA
*
1528 TGAAATAATG-AGTTAGCTAA
1 TGAAATAAAGAAGTTAGCTAA
1548 -GAAA
1 TGAAA
1552 ATGAAAACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 9 0.41
21 9 0.41
ACGTcount: A:0.49, C:0.04, G:0.22, T:0.24
Consensus pattern (21 bp):
TGAAATAAAGAAGTTAGCTAA
Found at i:2941 original size:13 final size:13
Alignment explanation
Indices: 2923--2948 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2913 CAATTTTTTG
2923 TGTATCGATACAT
1 TGTATCGATACAT
2936 TGTATCGATACAT
1 TGTATCGATACAT
2949 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3013 original size:21 final size:21
Alignment explanation
Indices: 2987--3042 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
2977 CTGCCAAGAA
2987 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
3008 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
3029 ATGTATCGATACAT
1 ATGTATCGATACAT
3043 TGCAACATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.27, C:0.18, G:0.11, T:0.45
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:4932 original size:18 final size:19
Alignment explanation
Indices: 4890--4934 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
4880 CTATCTATAC
4890 CTTTTTTTTCATGCTTTTT
1 CTTTTTTTTCATGCTTTTT
4909 CTTTTTTTTC-T-CTTTTT
1 CTTTTTTTTCATGCTTTTT
*
4926 -TTGTTTTTC
1 CTTTTTTTTC
4935 TTATTTAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 8 0.32
17 6 0.24
18 1 0.04
19 10 0.40
ACGTcount: A:0.02, C:0.16, G:0.04, T:0.78
Consensus pattern (19 bp):
CTTTTTTTTCATGCTTTTT
Found at i:9031 original size:19 final size:21
Alignment explanation
Indices: 8986--9039 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
8976 TTTCAACAAT
8986 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACAAACAGTAA
* *
9007 TTGTATCGATACATA-AGT-G
1 TTGTATCGATACAAACAGTAA
9026 TTGTATCGATACAA
1 TTGTATCGATACAA
9040 TGTATCGCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 13 0.43
20 3 0.10
21 14 0.47
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (21 bp):
TTGTATCGATACAAACAGTAA
Found at i:9570 original size:32 final size:33
Alignment explanation
Indices: 9529--9590 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
9519 GCCAAACTTG
* **
9529 TATCGATACATCAAGTA-TGTATCGATACAATA
1 TATCGATACACCAAAAATTGTATCGATACAATA
9561 TATCGATACACCAAAAATTGTATCGATACA
1 TATCGATACACCAAAAATTGTATCGATACA
9591 TTGGCTTGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 14 0.54
33 12 0.46
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.29
Consensus pattern (33 bp):
TATCGATACACCAAAAATTGTATCGATACAATA
Found at i:16217 original size:20 final size:20
Alignment explanation
Indices: 16188--16228 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
16178 CTCCTAGGCA
*
16188 GCACTACCAGGTCGCGACCG
1 GCACTACCAGGTCGCAACCG
*
16208 GCACTCCCAGGTCGCAACCG
1 GCACTACCAGGTCGCAACCG
16228 G
1 G
16229 GCAGTCCTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.20, C:0.41, G:0.29, T:0.10
Consensus pattern (20 bp):
GCACTACCAGGTCGCAACCG
Found at i:18333 original size:13 final size:13
Alignment explanation
Indices: 18315--18340 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
18305 TACATCAAGT
18315 ATGTATCGATACA
1 ATGTATCGATACA
18328 ATGTATCGATACA
1 ATGTATCGATACA
18341 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:18338 original size:32 final size:33
Alignment explanation
Indices: 18297--18360 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
18287 TAGCCAAACT
* **
18297 TGTATCGATACATCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
18329 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
18361 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:25552 original size:52 final size:52
Alignment explanation
Indices: 25474--25626 Score: 220
Period size: 52 Copynumber: 2.9 Consensus size: 52
25464 CGAAATATGA
25474 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATTTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATTTGGGC
* * * * *
25526 AAATTTGCCTACATGTATCGATACATTTTATAATTTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATTTGGGC
*
25578 AAATTTGCCTGCATGTATCGATACA--AAGATCAGTGTATCGATACATTTG
1 AAATTTGCCTGCATGTATCGATACATTTA-AT-AGTGTATCGATACATTTG
25627 AATAATGTAT
Statistics
Matches: 88, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
51 2 0.02
52 86 0.98
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATTTGGGC
Found at i:25695 original size:20 final size:19
Alignment explanation
Indices: 25662--25699 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
25652 GCAGTAGCTT
25662 AAATTGTATCGATACAAAA
1 AAATTGTATCGATACAAAA
*
25681 AAATATGTATTGATACAAA
1 AAAT-TGTATCGATACAAA
25700 TCGTTGAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.53, C:0.08, G:0.11, T:0.29
Consensus pattern (19 bp):
AAATTGTATCGATACAAAA
Found at i:27176 original size:13 final size:13
Alignment explanation
Indices: 27158--27183 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27148 AATTTTTTTG
27158 TGTATCGATACAT
1 TGTATCGATACAT
27171 TGTATCGATACAT
1 TGTATCGATACAT
27184 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:29536 original size:20 final size:20
Alignment explanation
Indices: 29511--29564 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 20
29501 GTTTGAAGCA
29511 ATGTATCGATACAAT-T-CATC
1 ATGTATCGATACAATGTGC--C
29531 ATGTATCGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
29551 ATGTATCGATACAA
1 ATGTATCGATACAA
29565 ATAGTGGTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 30 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTGCC
Found at i:29655 original size:32 final size:33
Alignment explanation
Indices: 29614--29676 Score: 94
Period size: 32 Copynumber: 1.9 Consensus size: 33
29604 ACAATTGTCC
*
29614 ATGTATCGATACAATG-A-ACATGTATCGATATA
1 ATGTATCGATACAAAGCATA-ATGTATCGATATA
29646 ATGTATCGATACAAAGCATAATGTATCGATA
1 ATGTATCGATACAAAGCATAATGTATCGATA
29677 CATCTGGGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.54
33 12 0.43
34 1 0.04
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAAGCATAATGTATCGATATA
Found at i:32057 original size:22 final size:21
Alignment explanation
Indices: 32022--32071 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
32012 TTTGGTGATG
*
32022 ATTTTG-A-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
32042 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
32063 AATTTGAAG
1 ATTTTGAAG
32072 AAGATTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 12 0.46
22 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:32068 original size:21 final size:22
Alignment explanation
Indices: 32029--32071 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
32019 ATGATTTTGA
* *
32029 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
32051 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
32072 AAGATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:37172 original size:153 final size:155
Alignment explanation
Indices: 36946--37330 Score: 433
Period size: 154 Copynumber: 2.5 Consensus size: 155
36936 CTAAGTTTAA
* *
36946 AAAAAATTACGAAAATGCCTCTAGGGGATACCTTTGACATAAAAGTACCCAGTACCCCTAAAGGA
1 AAAAAATTACCAAAATGCCTTTAGGGGATACCTTTGACATAAAAGTACCCAGTACCCCTAAAGGA
* * * * *
37011 CTTAAAAAT-ATTGTAGATGGGATGAACCTATCCTAAATACCCACCATT-GGCATAAATGC-GAA
66 CCTAAAAATGATTGTAAAAGGGACGAACCTATCCTAAATACCCACC-TTCGGCATAAAAGCAG-A
** *
37073 CACGGTGACAACCTAGGATTCGGTTCT
129 CACAATGACAACCTAGGACTCGGTTCT
* * * **
37100 -AAAAATTACCAAAATGCCTTTAGGGGATACCTTTGACGTAAAAGTACCC-GATATCCTTAGTGG
1 AAAAAATTACCAAAATGCCTTTAGGGGATACCTTTGACATAAAAGTACCCAG-TACCCCTAAAGG
* * * *
37163 ACACT-AAAATGATTTTAAAAGGGACGAGCCTATCCTAAATATCTACCTTCGGCATAAAAGCAGA
65 AC-CTAAAAATGATTGTAAAAGGGACGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCAGA
*
37227 CCCAATGACAACCTAGGACTCGGTTCT
129 CACAATGACAACCTAGGACTCGGTTCT
* * * * * *
37254 AAAAAATCACCAGAATGCCCTTA-AGGATACCTTCGACATAAAAGTACCCAATACCCCTAAAGGA
1 AAAAAATTACCAAAATGCCTTTAGGGGATACCTTTGACATAAAAGTACCCAGTACCCCTAAAGGA
* *
37318 CTTAAAAAGGATT
66 CCTAAAAATGATT
37331 TATTGATGTG
Statistics
Matches: 190, Mismatches: 33, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
152 1 0.01
153 64 0.34
154 105 0.55
155 20 0.11
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (155 bp):
AAAAAATTACCAAAATGCCTTTAGGGGATACCTTTGACATAAAAGTACCCAGTACCCCTAAAGGA
CCTAAAAATGATTGTAAAAGGGACGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCAGACA
CAATGACAACCTAGGACTCGGTTCT
Found at i:38628 original size:12 final size:12
Alignment explanation
Indices: 38611--38663 Score: 65
Period size: 12 Copynumber: 4.5 Consensus size: 12
38601 AAATTTCCCA
38611 TTTTTTCT-TGCT
1 TTTTTTCTCT-CT
*
38623 TTTTTTTTCTC-
1 TTTTTTCTCTCT
*
38634 TTTTCTCTCTCT
1 TTTTTTCTCTCT
38646 TTTTTTCTCTCT
1 TTTTTTCTCTCT
38658 TTTTTT
1 TTTTTT
38664 GCTGAGTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
11 9 0.26
12 25 0.71
13 1 0.03
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (12 bp):
TTTTTTCTCTCT
Found at i:38637 original size:23 final size:23
Alignment explanation
Indices: 38611--38662 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
38601 AAATTTCCCA
*
38611 TTTTTTCT-TGCTTTTTTTTTCTC
1 TTTTTTCTCT-CTTTTTTTCTCTC
*
38634 TTTTCTCTCTCTTTTTTTCTCTC
1 TTTTTTCTCTCTTTTTTTCTCTC
38657 TTTTTT
1 TTTTTT
38663 TGCTGAGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 24 0.96
24 1 0.04
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (23 bp):
TTTTTTCTCTCTTTTTTTCTCTC
Found at i:38651 original size:14 final size:13
Alignment explanation
Indices: 38611--38663 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 13
38601 AAATTTCCCA
38611 TTTTTTCT-TGCTT
1 TTTTTTCTCT-CTT
38624 TTTTTT-TCTC--
1 TTTTTTCTCTCTT
*
38634 TTTTCTCTCTC-T
1 TTTTTTCTCTCTT
38646 TTTTTTCTCTCTT
1 TTTTTTCTCTCTT
38659 TTTTT
1 TTTTT
38664 GCTGAGTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
10 5 0.15
11 4 0.12
12 12 0.35
13 13 0.38
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (13 bp):
TTTTTTCTCTCTT
Found at i:39494 original size:167 final size:164
Alignment explanation
Indices: 38991--39545 Score: 546
Period size: 167 Copynumber: 3.4 Consensus size: 164
38981 GAAATAAATT
* ** * * *
38991 GAATTTTTCAAAACTAATTTAATGGGAGTTAAATAACAATA-TTAGATGAATTTTAAAAATTTTA
1 GAATTTTTGAAAACTAATTTAATATGAATCAAATAACAATATTTA-ATGAATTTTAAAAA-TTAA
* * * * * * *** **
39055 AATCAAAAAAAATC-CCTCCAAAAATATTTACAGAGTAGAAAACTCAGTTTTTTGGAAAAAGGCA
64 AAACAAGAAAAATCTCAT-CAAAAACATTTACGGAGTAGAAAACTCTGTTTTTAAAAAAAAGAAA
* * *
39119 TTTCAAAGAAAAAATTC-AAAACTTATGAAAATGAAT
128 TTTCAAGGAAAAAATTCAAAAATTTATGAAAATGAAG
* * * * *
39155 TAATTTTTTAAAACTGATTTAATATGAATCAAATAACAATATTTGATGAGTTTTAAAAATTAGAA
1 GAATTTTTGAAAACTAATTTAATATGAATCAAATAACAATATTTAATGAATTTTAAAAATTA-AA
** * * * * ** *
39220 AACAAGAAAAATCT-ATCGTAAGCATTTATGAAGTAGAAAACTTCATATTTCGAAAACAAAGAAA
65 AACAAGAAAAATCTCATCAAAAACATTTACGGAGTAGAAAAC-TC-TGTTTTTAAAAAAAAGAAA
* *
39284 TTTCAAGGAAAAAATTGAAACATTTATGAAAAT-AAG
128 TTTCAAGGAAAAAATTCAAAAATTTATGAAAATGAAG
* * * * *
39320 TGAATTTTTGCAAACTAAATTAATGTGAATCAAATGATAATATTTAATGAATTTTAAAAATTAAA
1 -GAATTTTTGAAAACTAATTTAATATGAATCAAATAACAATATTTAATGAATTTTAAAAATTAAA
*
39385 AACCAAGAAAAATCTCATTAAAAACATTTACGGAGTAGAAAACTCTGTTTTTAAAAAATAAGAAA
65 AA-CAAGAAAAATCTCATCAAAAACATTTACGGAGTAGAAAACTCTGTTTTTAAAAAA-AAG--A
39450 AATTT-AAGGAAAAAATTCAAAAATTTATGAAAATGAAG
126 AATTTCAAGGAAAAAATTCAAAAATTTATGAAAATGAAG
* * * * *
39488 GAATTTTTGAAAACTGATTTAATAAGAATTAAATAATAATATTTGATGAATTTTAAAA
1 GAATTTTTGAAAACTAATTTAATATGAATCAAATAACAATATTTAATGAATTTTAAAA
39546 TCATTTACGA
Statistics
Matches: 313, Mismatches: 65, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
163 20 0.06
164 63 0.20
165 41 0.13
166 82 0.26
167 98 0.31
168 9 0.03
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.32
Consensus pattern (164 bp):
GAATTTTTGAAAACTAATTTAATATGAATCAAATAACAATATTTAATGAATTTTAAAAATTAAAA
ACAAGAAAAATCTCATCAAAAACATTTACGGAGTAGAAAACTCTGTTTTTAAAAAAAAGAAATTT
CAAGGAAAAAATTCAAAAATTTATGAAAATGAAG
Found at i:43570 original size:47 final size:46
Alignment explanation
Indices: 43477--44226 Score: 524
Period size: 47 Copynumber: 16.2 Consensus size: 46
43467 CCACTTTTCA
* * * * *
43477 TCATTAGATTGTATTGGCATTACGACCTGGTTAAACTCTTTCCATCC
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTTT-CATCC
** * * *
43524 TTGTTTGACTATTTTGGTATTAGGACCTAGTCAAACTCTTCTCATCC
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTT-TCATCC
* * * * * * *
43571 TCATTTGACTATATTAGCGTTAAGACTTAGTTAAACTTTTTCCA-CTC
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTTT-CATC-C
*
43618 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTTTCCATTC
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTTT-CATCC
* * * * *
43665 TCATTTAAATGTATTGGCACTAGGACCTAGTAAAACTCTTTCCATTC
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTTT-CATCC
* * * *
43712 TCATTTGAATGTATTGGCATTAGGACCTGGACAAAGTCAAATTT-A--C
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTC---TTTCATCC
*
43758 TCACGTTTGACTGTATTGGCATTAGGACCTAGTCAAACTTTTATCATCC
1 TCA--TTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTT-TCATCC
* * * *
43807 TTATTTGACTGTATTGGCGTTAGGACCTAGTCAAACTCTATCCATCA
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCT-TTCATCC
* * * *
43854 TCATTTGACTGTATTGGCGTTAAGATCTAATCAAACTCTTCTCATCC
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTT-TCATCC
* * ** * *
43901 TCATTTGACTGTATTAGCCTTAAAAGCTGGTCAAA--C-TT-A---
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTTTCATCC
* * *
43940 T--TTT-ACTGTATTGGTATTAGAACCTGGTCAAACTCTTCTCATCC
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTT-TCATCC
* * * **
43984 TCATTTAACTATATTGGCGTTAAAACCTAGTCAAACTCTTTCCA-CTC
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTTT-CATC-C
* *
44031 TCATTTGATTGTATTGGCATTAGGACCTAGTCAAACTCTTTCCATTC
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTTT-CATCC
* * ** * * * *
44078 TCGTTTGACTATATTAACGTTAGGACCTGGTTAAACTCTTTTCACCC
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTC-TTTCATCC
** * * * * * *
44125 TCATTTGACTACATTAGCATTAGGGCTTGGTTAAACTCTTCTCACCC
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTT-TCATCC
** * * * * *
44172 TTGTTTGATTATATTGGCATTA-GTCCTGGTCAAACTCTTTTCATCT
1 TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTC-TTTCATCC
44218 TCATTTGAC
1 TCATTTGAC
44227 GTGTTGGTTC
Statistics
Matches: 565, Mismatches: 106, Indels: 65
0.77 0.14 0.09
Matches are distributed among these distances:
36 23 0.04
37 3 0.01
38 1 0.00
39 2 0.00
40 1 0.00
41 1 0.00
42 1 0.00
43 1 0.00
44 2 0.00
45 3 0.01
46 37 0.07
47 448 0.79
48 36 0.06
49 3 0.01
50 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (46 bp):
TCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTTTCATCC
Found at i:44044 original size:130 final size:130
Alignment explanation
Indices: 43806--44045 Score: 324
Period size: 130 Copynumber: 1.8 Consensus size: 130
43796 TTTTATCATC
* * * *
43806 CTTATTTGACTGTATTGGCGTTAGGACCTAGTCAAACTCTATCCATCATCATTTGACTGTATTGG
1 CTTATTTGACTGTATTGGCATTAGAACCTAGTCAAACTCTATCCATCATCATTTAACTATATTGG
* *
43871 CGTTAAGATCTAATCAAACTCTTCTCATCCTCATTTGACTGTATTAGCCTTAAAAGCTGGTCAAA
66 CGTTAAAACCTAATCAAACTCTTCTCATCCTCATTTGACTGTATTAGCCTTAAAAGCTGGTCAAA
* * * *
43936 CTTATTTTACTGTATTGGTATTAGAACCTGGTCAAACTCT-TCTCATCCTCATTTAACTATATTG
1 CTTATTTGACTGTATTGGCATTAGAACCTAGTCAAACTCTATC-CATCATCATTTAACTATATTG
* *
44000 GCGTTAAAACCTAGTCAAACTCTT-TCCA-CTCTCATTTGATTGTATT
65 GCGTTAAAACCTAATCAAACTCTTCT-CATC-CTCATTTGACTGTATT
44046 GGCATTAGGA
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
129 4 0.04
130 91 0.96
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (130 bp):
CTTATTTGACTGTATTGGCATTAGAACCTAGTCAAACTCTATCCATCATCATTTAACTATATTGG
CGTTAAAACCTAATCAAACTCTTCTCATCCTCATTTGACTGTATTAGCCTTAAAAGCTGGTCAAA
Found at i:44067 original size:177 final size:181
Alignment explanation
Indices: 43617--44093 Score: 534
Period size: 177 Copynumber: 2.6 Consensus size: 181
43607 TTTTTCCACT
* *
43617 CTCATTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTTTCCATTCTCATTTAAATGTATTGG
1 CTCATTTGACTGTATTGGCGTTAGGACCTAGTCAAACTCTTTCCA-TCTCATTTGAATGTATTGG
* * * * **
43682 CACTAGGACCTAGTAAAACTCTTTCCATTCTCATTTGAATGTATTGGCATTAGGACCTGGACAAA
65 CATTAGGACCTAGTCAAACTCTTTCCATTCTCATTTGACTGTATTAGCATTAAAACCTGG----A
* * *
43747 GTCAAATTTACTCACGTTTGACTGTATTGGCATTAGGACCTAGTCAAACTTTTATCATC
126 GTCAAACTTACT--C-TTTGACTGTATTGGCATTAGAACCTAGTCAAACTCTTATCATC
* * *
43806 CTTATTTGACTGTATTGGCGTTAGGACCTAGTCAAACTCTATCCATCATCATTTGACTGTATTGG
1 CTCATTTGACTGTATTGGCGTTAGGACCTAGTCAAACTCTTTCCATC-TCATTTGAATGTATTGG
* * * * * * *
43871 CGTTAAGATCTAATCAAACTC-TTCTCATCCTCATTTGACTGTATTAGCCTTAAAAGCT-G-GTC
65 CATTAGGACCTAGTCAAACTCTTTC-CATTCTCATTTGACTGTATTAGCATTAAAACCTGGAGTC
* * *
43933 AAACTTA-T-TTT-ACTGTATTGGTATTAGAACCTGGTCAAACTCTTCTCATC
129 AAACTTACTCTTTGACTGTATTGGCATTAGAACCTAGTCAAACTCTTATCATC
* * ** *
43983 CTCATTTAACTATATTGGCGTTAAAACCTAGTCAAACTCTTTCCACTCTCATTTGATTGTATTGG
1 CTCATTTGACTGTATTGGCGTTAGGACCTAGTCAAACTCTTTCCA-TCTCATTTGAATGTATTGG
* *
44048 CATTAGGACCTAGTCAAACTCTTTCCATTCTCGTTTGACTATATTA
65 CATTAGGACCTAGTCAAACTCTTTCCATTCTCATTTGACTGTATTA
44094 ACGTTAGGAC
Statistics
Matches: 246, Mismatches: 38, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
177 124 0.50
178 8 0.03
182 1 0.00
183 9 0.04
188 6 0.02
189 98 0.40
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (181 bp):
CTCATTTGACTGTATTGGCGTTAGGACCTAGTCAAACTCTTTCCATCTCATTTGAATGTATTGGC
ATTAGGACCTAGTCAAACTCTTTCCATTCTCATTTGACTGTATTAGCATTAAAACCTGGAGTCAA
ACTTACTCTTTGACTGTATTGGCATTAGAACCTAGTCAAACTCTTATCATC
Found at i:44592 original size:84 final size:84
Alignment explanation
Indices: 44485--44708 Score: 274
Period size: 84 Copynumber: 2.7 Consensus size: 84
44475 TTAGTCCTAG
* * * * *
44485 GTAAA-TCTTTTACCCTTTGTTGACTTGTCGGTTCAACCTTGGTCAACCCTTTATCTCTTGTTTA
1 GTAAACTCCTTTACCCTTTGTTGACTTATCGGTTCAGCCCTGGTCAACCCTTTATCCCTTGTTTA
*
44549 CCTGGT-GATTTAATGCCCA
66 CCT-ATCGATTTAATGCCCA
* * *
44568 GTAAACTCCTTTACCCTTTATTGACTTATCGGTTTAGCCCTAGTCAA-CCTTTCATCCCTTGTTT
1 GTAAACTCCTTTACCCTTTGTTGACTTATCGGTTCAGCCCTGGTCAACCCTTT-ATCCCTTGTTT
*
44632 ACCTATCGATTTAGTGCCCA
65 ACCTATCGATTTAATGCCCA
* * * * *
44652 GTAAACTCCTTTATCCTGTGTTGGCTTATCGGTTCAGCCCCGGTCAACCTTTTATCC
1 GTAAACTCCTTTACCCTTTGTTGACTTATCGGTTCAGCCCTGGTCAACCCTTTATCC
44709 ATTTTGTTTA
Statistics
Matches: 119, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
83 11 0.09
84 104 0.87
85 4 0.03
ACGTcount: A:0.18, C:0.27, G:0.15, T:0.40
Consensus pattern (84 bp):
GTAAACTCCTTTACCCTTTGTTGACTTATCGGTTCAGCCCTGGTCAACCCTTTATCCCTTGTTTA
CCTATCGATTTAATGCCCA
Found at i:44682 original size:43 final size:41
Alignment explanation
Indices: 44555--44682 Score: 109
Period size: 41 Copynumber: 3.0 Consensus size: 41
44545 TTTACCTGGT
* *
44555 GATTTAATGCCCAGTAAACTCCTTTACCCTTTATTGACTTATC
1 GATTT-ATGCCCAGTAAACTCCTTTATCC-TTGTTGACTTATC
* * * *
44598 GGTTTA-GCCCTAGTCAA--CCTTTCATCCCTTGTTTACCTATC
1 GATTTATGCCC-AGTAAACTCCTTT-AT-CCTTGTTGACTTATC
*
44639 GATTTAGTGCCCAGTAAACTCCTTTATCCTGTGTTGGCTTATC
1 GATTTA-TGCCCAGTAAACTCCTTTATCCT-TGTTGACTTATC
44682 G
1 G
44683 GTTCAGCCCC
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
40 5 0.08
41 20 0.30
42 16 0.24
43 20 0.30
44 5 0.08
ACGTcount: A:0.20, C:0.27, G:0.14, T:0.39
Consensus pattern (41 bp):
GATTTATGCCCAGTAAACTCCTTTATCCTTGTTGACTTATC
Found at i:44769 original size:85 final size:83
Alignment explanation
Indices: 44442--44844 Score: 259
Period size: 84 Copynumber: 4.8 Consensus size: 83
44432 CGATTTCGTA
** * * * ** * *
44442 CCGGTCAACC-TTT-T-CTCTCATTTACTTGTTGGTTTAGTCCTAGGTAAATCTTTTACCCTTTG
1 CCGGTCAACCTTTTATCCTCTTGTTTACCTGTCGGCTTAGTCCCGGGTAACTCCTTTACCCTTTG
* * *
44504 TTGACTTGTCGGTTCAACC
66 TTG-CTTATCGGTTTAGCC
** * ** * *
44523 TTGGTCAACCCTTTAT-CTCTTGTTTACCTGGT-GATTTAATGCCC-AGTAAACTCCTTTACCCT
1 CCGGTCAACCTTTTATCCTCTTGTTTACCT-GTCGGCTTAGT-CCCGGGT-AACTCCTTTACCCT
*
44585 TTATTGACTTATCGGTTTAGCC
63 TTGTTG-CTTATCGGTTTAGCC
** * * ** * * *
44607 CTAGTCAACCTTTCATCC-CTTGTTTACCTATCGATTTAGTGCCC-AGTAAACTCCTTTATCCTG
1 CCGGTCAACCTTTTATCCTCTTGTTTACCTGTCGGCTTAGT-CCCGGGT-AACTCCTTTACCCTT
*
44670 TGTTGGCTTATCGGTTCAGCC
64 TGTT-GCTTATCGGTTTAGCC
*
44691 CCGGTCAACCTTTTATCCATTTTGTTTA-CTCGTCGGCTTAGTCCCGGGTAACTCCTTTACCCTT
1 CCGGTCAACCTTTTATCC-TCTTGTTTACCT-GTCGGCTTAGTCCCGGGTAACTCCTTTACCCTT
*
44755 TGTTAGCTTATCGGTTTAACC
64 TGTT-GCTTATCGGTTTAGCC
* * * * * * * *
44776 TCGATCAACCTTTTTAT-CTGTTGCTTACCTGTTGGCTTAGTCCTGGGTAACTCTTTTTATCCTT
1 CCGGTCAACC-TTTTATCCTCTTGTTTACCTGTCGGCTTAGTCCCGGGTAACTC-CTTTACCCTT
44840 TGTTG
64 TGTTG
44845 ACTAGATTGC
Statistics
Matches: 261, Mismatches: 46, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
81 8 0.03
82 3 0.01
83 20 0.08
84 146 0.56
85 61 0.23
86 23 0.09
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (83 bp):
CCGGTCAACCTTTTATCCTCTTGTTTACCTGTCGGCTTAGTCCCGGGTAACTCCTTTACCCTTTG
TTGCTTATCGGTTTAGCC
Found at i:46226 original size:165 final size:164
Alignment explanation
Indices: 45853--46676 Score: 839
Period size: 165 Copynumber: 5.0 Consensus size: 164
45843 TGAGTTATTA
* * * *
45853 TTTTCTTTTACAATTCTCCTTATTTTTGAAATACGGAGTTTTTTACTCCGTAAATATTTTCGAAT
1 TTTTCTTTGA-AA-TCTCCTTATTTTTGAAATACGAAGTTTTCTACTCCGTAAATATTTTCG-AG
* * * *
45918 GGATCTTTT-TTGGCTTTT-ATTTTCTATAAATTAATCAAATACTATTATTTAATTCATATTAAA
63 GGAT-TTTTCTTGGTTTTTAATTTT-TA-AAATTCATCAAATATTATTATTTAATTTATATTAAA
* **
45981 TTATTTTTCAAAAATTCATTCATTTTCATTCTTTTTTCATT
125 TCATTTTTCAAAAATTCATTCATTTTCA-TAATTTTTCATT
* * * * *
46022 ATTTTCTTTGAAA-ATCCTATATTTTTGAAATATGAAGTTTTCTACTCCATAAATTTTTTCAGAA
1 -TTTTCTTTGAAATCTCCT-TATTTTTGAAATACGAAGTTTTCTACTCCGTAAATATTTTC-GAG
*
46086 GGATTTTTCTTGGTTTTTAATTTTTAAAATTTATCAAATATTATTATTTAATTTATATTAAATCA
63 GGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTTATATTAAATCA
*
46151 -TTTTCAAAAATTCATTCAGTTTCATAAGTTTTTCATT
128 TTTTTCAAAAATTCATTCATTTTCATAA-TTTTTCATT
* * *
46188 TTTTCTTTGAAACTCTCC-TATTTTTGAAATACGAAGTTTTCTAGTCCATAAATTTTTTCGAGGG
1 TTTTCTTTGAAA-TCTCCTTATTTTTGAAATACGAAGTTTTCTACTCCGTAAATATTTTCGA-GG
* * * *
46252 GATTTTTTTTAGTTTTTAACTTTTAAAATTCATCAAATAATATTATTTAATTTATATTAAATCAT
64 GATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTTATATTAAATCAT
* *
46317 TTTTAAAAAATTCATTCATTTTCATTCATTTTTCA-T
129 TTTTCAAAAATTCATTCATTTTCA-TAATTTTTCATT
* * * * * *
46353 TTTTCGTTGAAATTTCCTTATTTTCGATAAATA-G-AGTTTTCTGCTCTGTAAATGTTTTCGAGG
1 TTTTCTTTGAAATCTCCTTATTTTTG--AAATACGAAGTTTTCTACTCCGTAAATATTTTCGAGG
* * *
46416 AGATTTTTCTTGGTTTTTAATTTTTAAAATTCATTAAATATTGTTATTT-ATTTCATATTAAACC
64 -GATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTT-ATATTAAATC
* *
46480 A-GTTTCAAAAGATTCATTTATTTTCATGAA-TTTT--TT
127 ATTTTTCAAAA-ATTCATTCATTTTCAT-AATTTTTCATT
* * * * ** * * *
46516 TTTTCATTGAAATCCCCTTATTTTCGAAAAATTAAGTTTTCCACTCTGTAAATATTTTCGGGGAG
1 TTTTCTTTGAAATCTCCTTATTTTTGAAATACGAAGTTTTCTACTCCGTAAATATTTTCGAGG-G
* * * * * **
46581 ATTTTTCTTAGTTTTAAATTTTTAAAATTCATCTAATATTGTTATTTAACTCCTATTAAATCATT
65 ATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTTATATTAAATCATT
* * *
46646 TTTGAAAAATTCAATTTA-TTTCATAAATTTT
130 TTTCAAAAATTC-ATTCATTTTCATAATTTTT
46677 GAAGTTTTGT
Statistics
Matches: 564, Mismatches: 66, Indels: 55
0.82 0.10 0.08
Matches are distributed among these distances:
161 4 0.01
162 2 0.00
163 117 0.21
164 38 0.07
165 220 0.39
166 62 0.11
167 53 0.09
168 51 0.09
169 8 0.01
170 9 0.02
ACGTcount: A:0.30, C:0.11, G:0.08, T:0.51
Consensus pattern (164 bp):
TTTTCTTTGAAATCTCCTTATTTTTGAAATACGAAGTTTTCTACTCCGTAAATATTTTCGAGGGA
TTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTTATATTAAATCATTT
TTCAAAAATTCATTCATTTTCATAATTTTTCATT
Found at i:46642 original size:328 final size:330
Alignment explanation
Indices: 45945--46658 Score: 883
Period size: 328 Copynumber: 2.2 Consensus size: 330
45935 TATTTTCTAT
* * * *
45945 AAATTAATCAAATACTATTATTTAATTCATATTAAATTATTTTTCAAAAATTCATTCATTTTCAT
1 AAATTCATCAAATAATATTATTTAATTCATATTAAATCATTTTTAAAAAATTCATTCATTTTCAT
* * *
46010 TCTTTTTTCATTATTTTCTTTGAAAATCCTATATTTTTGAAATATGAAGTTTTCTACTCCATAAA
66 TCATTTTTCATTATTTTCGTTGAAAATCCTATATTTTCGAAATATGAAGTTTTCTACTCCATAAA
* *
46075 TTTTTTCAGAAGGATTTTTCTTGGTTTTTAATTTTTAAAATTTATCAAATATTATTATTTAATTT
131 TGTTTTCAGAAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTT
* * * *
46140 ATATTAAATCATTTTCAAAAATTCATTCAGTTTCATAAGTTTTTCATTTTTTCTTTGAAACTCTC
196 ATATTAAACCAGTTTCAAAAATTCATTCAGTTTCATAAG-TTTT-ATTTTTTCATTGAAACTCCC
* * * * * * *
46205 CTATTTTTGAAATACGAAGTTTTCTAGTCCATAAATTTTTTCGAGGGGATTTTTTTTAGTTTTTA
259 CTATTTTCGAAAAACGAAGTTTTCCACTCCATAAATATTTTCGAGGGGATTTTTCTTAGTTTTAA
46270 ACTTTTA
324 ACTTTTA
*
46277 AAATTCATCAAATAATATTATTTAATTTATATTAAATCATTTTTAAAAAATTCATTCATTTTCAT
1 AAATTCATCAAATAATATTATTTAATTCATATTAAATCATTTTTAAAAAATTCATTCATTTTCAT
* * **
46342 TCATTTTTCA-T-TTTTCGTTGAAATTTCCT-TATTTTCGATAA-AT-AGAGTTTTCTGCTCTGT
66 TCATTTTTCATTATTTTCGTTGAAA-ATCCTATATTTTCGA-AATATGA-AGTTTTCTACTCCAT
* * *
46402 AAATGTTTTC-GAGGAGATTTTTCTTGGTTTTTAATTTTTAAAATTCATTAAATATTGTTATTT-
128 AAATGTTTTCAGAAG-GATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTA
* *
46465 ATTTCATATTAAACCAGTTTCAAAAGATTCATTTATTTTCATGAA-TTTT-TTTTTTCATTGAAA
192 ATTT-ATATTAAACCAGTTTCAAAA-ATTCATTCAGTTTCAT-AAGTTTTATTTTTTCATTGAAA
** **
46528 -TCCCCTTATTTTCGAAAAATTAAGTTTTCCACTCTGTAAATATTTTCG-GGGAGATTTTTCTTA
254 CTCCCC-TATTTTCGAAAAACGAAGTTTTCCACTCCATAAATATTTTCGAGGG-GATTTTTCTTA
*
46591 GTTTTAAATTTTTA
317 GTTTTAAACTTTTA
* * * * * *
46605 AAATTCATCTAATATTGTTATTTAACTCCTATTAAATCATTTTTGAAAAATTCA
1 AAATTCATCAAATAATATTATTTAATTCATATTAAATCATTTTTAAAAAATTCA
46659 ATTTATTTCA
Statistics
Matches: 331, Mismatches: 42, Indels: 22
0.84 0.11 0.06
Matches are distributed among these distances:
327 7 0.02
328 115 0.35
329 8 0.02
330 109 0.33
331 21 0.06
332 71 0.21
ACGTcount: A:0.31, C:0.11, G:0.07, T:0.50
Consensus pattern (330 bp):
AAATTCATCAAATAATATTATTTAATTCATATTAAATCATTTTTAAAAAATTCATTCATTTTCAT
TCATTTTTCATTATTTTCGTTGAAAATCCTATATTTTCGAAATATGAAGTTTTCTACTCCATAAA
TGTTTTCAGAAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTT
ATATTAAACCAGTTTCAAAAATTCATTCAGTTTCATAAGTTTTATTTTTTCATTGAAACTCCCCT
ATTTTCGAAAAACGAAGTTTTCCACTCCATAAATATTTTCGAGGGGATTTTTCTTAGTTTTAAAC
TTTTA
Found at i:47029 original size:20 final size:20
Alignment explanation
Indices: 47006--47050 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
46996 AACAAAAGAC
*
47006 AAAAAAA-AAA-AAAGAACGG
1 AAAAAAAGAAAGAAA-AAAGG
47025 AAAAAAAGAAAGAAAAAAGG
1 AAAAAAAGAAAGAAAAAAGG
47045 AAAAAA
1 AAAAAA
47051 TGGAAAAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 7 0.30
20 13 0.57
21 3 0.13
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (20 bp):
AAAAAAAGAAAGAAAAAAGG
Found at i:47143 original size:21 final size:22
Alignment explanation
Indices: 47103--47143 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
47093 GTAATTATTC
47103 TTTTCAATCTTGTTTCTTGCTG
1 TTTTCAATCTTGTTTCTTGCTG
47125 TTTTC-ATCTTTGTTT-TTGC
1 TTTTCAATC-TTGTTTCTTGC
47144 ACATTTTAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.07, C:0.17, G:0.12, T:0.63
Consensus pattern (22 bp):
TTTTCAATCTTGTTTCTTGCTG
Found at i:49102 original size:154 final size:152
Alignment explanation
Indices: 48706--49110 Score: 440
Period size: 154 Copynumber: 2.6 Consensus size: 152
48696 AACTGAGTTT
* * * * *
48706 GCTTTTATGTCGAAGGTGGGTATTTATGATAGGTTCATCCCTTTTATAATTCTTTTAAGTCCTTT
1 GCTTTTATGCCAAAGATGGGTATTTAGGATAGGTTCAT-CCTTTTATAATTCTTTTAAGTCTTTT
* * * * * * ** * *
48771 AGGTGTATCGAGCACTTCTACATCGAAGGTATCCCCTAAAGGCATTTGGTAATTTTTTAGAATCG
65 AGGAGTATCGAGTATTTCTACGTCGAAAGTATACCCTAAAGGCATTTCATAATTTTTCAGAATCA
*
48836 AGTCCTAGGTTGTCACTAGGTCA
130 AGTCCTAGGTTGTCACGAGGTCA
* *
48859 GCTTTTATGCCAAAGGTGGGTATTTAGGATAGGTTCATCCTTTTTATAATTCTCTTAAGTCTTTT
1 GCTTTTATGCCAAAGATGGGTATTTAGGATAGGTTCATCC-TTTTATAATTCTTTTAAGTCTTTT
* * * *
48924 AGGATTATCAGAATACTTTC-ACGTCGAAAGTA-ACCCTAAGGGCATTTTCATAATTTTTCATAA
65 AGGAGTATC-GAGTA-TTTCTACGTCGAAAGTATACCCTAAAGGCA-TTTCATAATTTTTCAGAA
*
48987 TCAATTCCTAGGTTGTCACCGA-GTCCA
127 TCAAGTCCTAGGTTGTCA-CGAGGT-CA
* * * *
49014 -CTTTTATGCCAAATATGGGTATTTAGGATAGGTTCATCTCATCTATAATCCTTTTTAAGTCTTT
1 GCTTTTATGCCAAAGATGGGTATTTAGGATAGGTTCATC-CTTTTATAATTC-TTTTAAGTCTTT
* *
49078 TAGGGGTATCGTGTATTTCTACGTCGAAAGTAT
64 TAGGAGTATCGAGTATTTCTACGTCGAAAGTAT
49111 TTTCTACGAG
Statistics
Matches: 211, Mismatches: 31, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
152 2 0.01
153 78 0.37
154 104 0.49
155 27 0.13
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (152 bp):
GCTTTTATGCCAAAGATGGGTATTTAGGATAGGTTCATCCTTTTATAATTCTTTTAAGTCTTTTA
GGAGTATCGAGTATTTCTACGTCGAAAGTATACCCTAAAGGCATTTCATAATTTTTCAGAATCAA
GTCCTAGGTTGTCACGAGGTCA
Found at i:52554 original size:30 final size:29
Alignment explanation
Indices: 52518--52605 Score: 95
Period size: 32 Copynumber: 2.9 Consensus size: 29
52508 CATGACTTAA
52518 TGGCATCCTTTTTCAAAGTCCACAACTAAG
1 TGGCATCCTTTTT-AAAGTCCACAACTAAG
* * **
52548 TGGCATCTATTTTTTAAAAGTCCATAACTTTG
1 TGGCATC--CTTTTT-AAAGTCCACAACTAAG
*
52580 TGGCACCCTTTTTAAAGTCCACAACT
1 TGGCATCCTTTTTAAAGTCCACAACT
52606 TCGTGACACT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 12 0.25
30 12 0.25
32 24 0.50
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.35
Consensus pattern (29 bp):
TGGCATCCTTTTTAAAGTCCACAACTAAG
Found at i:52605 original size:29 final size:30
Alignment explanation
Indices: 52512--52651 Score: 95
Period size: 29 Copynumber: 4.6 Consensus size: 30
52502 CAACTCCATG
* * *
52512 ACTTAATGGCATCCTTTTTCAAAGTCCACA
1 ACTTAGTGGCACCCTTTTTAAAAGTCCACA
* ** *
52542 ACTAAGTGGCATCTATTTTTTAAAAGTCCATA
1 ACTTAGTGGCA-C-CCTTTTTAAAAGTCCACA
*
52574 ACTTTGTGGCACCCTTTTT-AAAGTCCACA
1 ACTTAGTGGCACCCTTTTTAAAAGTCCACA
* * * * *
52603 ACTTCGTGACACTC-TTTTCAAAGCCCACACA
1 ACTTAGTGGCACCCTTTTTAAAAG-TC-CACA
*
52634 AGTTAGTGGCACCTCTTT
1 ACTTAGTGGCACC-CTTT
52652 ATTTTTTTCT
Statistics
Matches: 83, Mismatches: 20, Indels: 11
0.73 0.18 0.10
Matches are distributed among these distances:
28 4 0.05
29 24 0.29
30 15 0.18
31 14 0.17
32 24 0.29
33 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.34
Consensus pattern (30 bp):
ACTTAGTGGCACCCTTTTTAAAAGTCCACA
Found at i:52754 original size:72 final size:72
Alignment explanation
Indices: 52651--52846 Score: 225
Period size: 73 Copynumber: 2.7 Consensus size: 72
52641 GGCACCTCTT
* * * **
52651 TATTTTTT-TCTTTTTAAAACTCACATAAGTTGGTGGCACCTTTTTCTTTTTAAAG-CTCGCACA
1 TATTTTTTCTCTTTTT-AAGCCCACACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCT-GCACA
* *
52714 AGCTAGGAG
64 AGCTAGCAA
* * *
52723 TATTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCACCCCTTTCTTTTCAAAGCCTGCATAGG
1 TATTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCTGCACAAG
52788 CTAGCAA
66 CTAGCAA
* * * *
52795 CACATTTTTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCCCTTTCTTTTT
1 TA-TTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCACCCCTTTCTTTTT
52847 TTTCTCTTTA
Statistics
Matches: 106, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
72 52 0.49
73 54 0.51
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (72 bp):
TATTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCTGCACAAG
CTAGCAA
Found at i:52769 original size:37 final size:37
Alignment explanation
Indices: 52656--53788 Score: 375
Period size: 36 Copynumber: 29.9 Consensus size: 37
52646 CTCTTTATTT
* * * *
52656 TTTTCT-TTTTAAAACTCACATAAGTTGGTGGCACCT
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
* * * * * **
52692 TTTTCT-TTTTAAAGCTCGCACAAGCTAGG-AGTA-TT
1 TTTTCTCTTTTAAAGCCCACACAAG-TTGGTGGCACCC
*
52727 TTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCACCC
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
* * ** * * * * *** **
52764 CTTTCT-TTTCAAAGCCTGCATAGGCTAGCAACACAT
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
* * *
52800 TTTTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCCCTTTC
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCA--CC---C
* * * *
52842 TTTTTTTTCTCTTTAGAGCCTACATAAGTTGGTGGCACCC
1 --TTTTCTCT-TTTAAAGCCCACACAAGTTGGTGGCACCC
* * * * **
52882 CTTTCT-TTTTAAAGCTCGCACAAGCTGGTGGCACAT
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
** ** *
52918 TTTTCTCTTTGT-AAGCCTTCA-TTGTTGGTGGCACTCTT
1 TTTTCTCTTT-TAAAGCCCACACAAGTTGGTGGCAC-C-C
* * *
52956 TTTTTTCTTTTTAAAAG-CCACATAAGTTGGTAGCACCAC
1 TTTTCTC-TTTT-AAAGCCCACACAAGTTGGTGGCACC-C
* * * * *
52995 -TTTCT-TTTTAAAGCCCGCACAAGCTAGTAGCACCT
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
* ** *
53030 TTTTCTCTTTTTAAGCCCACACAAGTTACTAGCACCATTTTC
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACC-----C
* *
53072 TTTTATCCTTTTCAAAGCCCACACAAGTTGGTAGCACCC
1 TTTTCT-CTTTT-AAAGCCCACACAAGTTGGTGGCACCC
* * * * *
53111 GTTTCT-TTTTAAAGCCCCCGCACAAGCTAGTGGTA-CC
1 TTTTCTCTTTTAAAG--CCCACACAAGTTGGTGGCACCC
* ** * *
53148 TTTTTTCTTTTTTAGCCCATACAAGTTGGT-ACACCC
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
* * * *
53184 CTTTC-CTTTTAAAGCTCGCACAAGCTT-GTGGCACCA
1 TTTTCTCTTTTAAAGCCCACACAAG-TTGGTGGCACCC
* * * * *
53220 TTTTATCTTTTTAAGCCTACATAAGTTGGTGCCACCC
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
* *
53257 TTTTTTTATCCTTTTCAAAGCCCACATAAGTTGGTGGCACCC
1 ---TTTTCT-CTTTT-AAAGCCCACACAAGTTGGTGGCACCC
* ** * * * *
53299 CTTTCT-TTTTAAAGCCCGTATAAGCTGATGACA-CC
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
* * *
53334 TTATTCTTTTTTTAAGACCACACAAGTTGGTGGCACCCCTTTC
1 TT-TTCTCTTTTAAAGCCCACACAAGTTGGTGGCA--CC---C
* * *
53377 TTTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGTA-CC
1 -TTTTCTC-TTTTAAAGCCCACACAAGTTGGTGGCACCC
** * * *
53415 TCTTTCT-TTTTAAAGCCTGCACAA---GCTGGCAGCA
1 T-TTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
* ** * * *
53449 TTTT-T-TTCTAAAGCCTGCAAAAGCTGGTGGCACCT
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
* *
53484 TTTTCT-TTTCTTAATCCCACACAAGTTGGTGGCACCTTTCTC
1 TTTTCTCTTT-TAAAGCCCACACAAGTTGGTGGCA-C---C-C
*
53526 TTTTATCCTTTTCAAAGCCCACACAAGTTGGTGGCACTCC
1 TTTTCT-CTTTT-AAAGCCCACACAAGTTGGTGGCAC-CC
** * **
53566 -TTTCT-TTTTAAAGCCCACACAAGCCGGAGGCACTTT
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCAC-CC
* * *
53602 TTTTCTCTTTTCAAGCCCACATAAGTTGGTGGCGCCC
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
* **
53639 TTTTTTTTTCTTATTAAAGCTTACACAAGTTGGTGAG-ACCC
1 ---TTTTCTCTT-TTAAAGCCCACACAAGTTGGTG-GCACCC
* * * * ** *
53680 -CTTCT-TTTTAAAGCCTACGCAAGCTGGCAGCACCT
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
* * * *
53715 TTTTCTCTTTTTAATCCCACACAAGTTGGGGGCACCTTTT
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACC---C
* *
53755 TTTTCTTTTTTAAAGCCCACAGAAGTTGGTGGCA
1 TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCA
53789 TCATCTTTAA
Statistics
Matches: 803, Mismatches: 212, Indels: 160
0.68 0.18 0.14
Matches are distributed among these distances:
32 16 0.02
33 8 0.01
34 3 0.00
35 65 0.08
36 221 0.28
37 167 0.21
38 65 0.08
39 21 0.03
40 60 0.07
41 30 0.04
42 34 0.04
43 13 0.02
44 77 0.10
45 23 0.03
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.37
Consensus pattern (37 bp):
TTTTCTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
Found at i:53004 original size:112 final size:112
Alignment explanation
Indices: 52725--53141 Score: 345
Period size: 112 Copynumber: 3.6 Consensus size: 112
52715 GCTAGGAGTA
* * * * * * * * *
52725 TTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCACCCCTTTCTTTTCAAAGCCTGCATAGGCT
1 TTTTTTCTC-TTTAAAGCCTACATAAGTTGGTAGCACCACTTTCTTTTTAAAGCCCGCACAAGCT
* * * * * **
52790 AGCAACACATTTTTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCCCTTTCTT
65 AGTAGCACATTTTTCTCTTTGTAAGCCTTCA-TTGTTGGTGGCA---C--TCTT
* * * * *
52844 TTTTTTCTCTTTAGAGCCTACATAAGTTGGTGGCACCCCTTTCTTTTTAAAGCTCGCACAAGCTG
1 TTTTTTCTCTTTAAAGCCTACATAAGTTGGTAGCACCACTTTCTTTTTAAAGCCCGCACAAGCTA
*
52909 GTGGCACATTTTTCTCTTTGTAAGCCTTCATTGTTGGTGGCACTCTT
66 GTAGCACATTTTTCTCTTTGTAAGCCTTCATTGTTGGTGGCACTCTT
*
52956 TTTTTTCTTTTTAAAAGCC-ACATAAGTTGGTAGCACCACTTTCTTTTTAAAGCCCGCACAAGCT
1 TTTTTTCTCTTT-AAAGCCTACATAAGTTGGTAGCACCACTTTCTTTTTAAAGCCCGCACAAGCT
* * ** ** ** *
53020 AGTAGCACCTTTTTCTCTTTTTAAGCCCACACAAGTTACTAGCAC-CATT
65 AGTAGCACATTTTTCTCTTTGTAAGCCTTCA-TTGTTGGTGGCACTC-TT
* * *
53069 TTCTTTTATCCTTTTCAAAGCCCACACAAGTTGGTAGCACC-CGTTTCTTTTTAAAGCCCCCGCA
1 TT-TTTTCT-C-TTT-AAAGCCTACATAAGTTGGTAGCACCAC-TTTCTTTTTAAAG--CCCGCA
53133 CAAGCTAGT
59 CAAGCTAGT
53142 GGTACCTTTT
Statistics
Matches: 250, Mismatches: 38, Indels: 20
0.81 0.12 0.06
Matches are distributed among these distances:
112 83 0.33
113 17 0.07
114 6 0.02
116 10 0.04
117 40 0.16
118 70 0.28
119 24 0.10
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.38
Consensus pattern (112 bp):
TTTTTTCTCTTTAAAGCCTACATAAGTTGGTAGCACCACTTTCTTTTTAAAGCCCGCACAAGCTA
GTAGCACATTTTTCTCTTTGTAAGCCTTCATTGTTGGTGGCACTCTT
Found at i:53056 original size:230 final size:228
Alignment explanation
Indices: 52725--53157 Score: 530
Period size: 230 Copynumber: 1.9 Consensus size: 228
52715 GCTAGGAGTA
* * * * *
52725 TTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCACCCCTTTCTTTTCAAAGCCTGCATAGGCT
1 TTTTTTCTCTTTTTAAGCCCACACAAGTTGGTAGCACCACTTTCTTTTCAAAGCCCGCACAAGCT
* * ** * * * *
52790 AGCAACACATTTTTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCCCTTTCTTTTTTTTCTCTT
66 AGCAACACATTTTTCTCTTTTTAAGCCCACACAAGTTACTAGCACCACTTTC-TTTTATCCT-TT
* * * * * *
52855 T-AGAGCCTACATAAGTTGGTGGCACCCCTTTCTTTTTAAAG-CTCGCACAAGCTGGTGGCACAT
129 TCAAAGCCCACACAAGTTGGTAGCACCCCTTTCTTTTTAAAGCCCCGCACAAGCTAGTGGCACAT
52918 TTTTCTCTTTGTAAGCCTTCATTGTTGGTGGCACTC
194 TTTT-TCTTTGTAAGCCTTCATTGTTGGTGGCACTC
* * *
52954 TTTTTTTTCTTTTTAAAAG-CCACATAAGTTGGTAGCACCACTTTCTTTTTAAAGCCCGCACAAG
1 TTTTTTCTCTTTTT--AAGCCCACACAAGTTGGTAGCACCACTTTCTTTTCAAAGCCCGCACAAG
* * * *
53018 CTAGTAGCACCTTTTTCTCTTTTTAAGCCCACACAAGTTACTAGCACCATTTTCTTTTATCCTTT
64 CTAGCAACACATTTTTCTCTTTTTAAGCCCACACAAGTTACTAGCACCACTTTCTTTTATCCTTT
* * *
53083 TCAAAGCCCACACAAGTTGGTAGCACCCGTTTCTTTTTAAAGCCCCCGCACAAGCTAGTGGTACC
129 TCAAAGCCCACACAAGTTGGTAGCACCCCTTTCTTTTTAAAG-CCCCGCACAAGCTAGTGGCACA
53148 TTTTTTCTTT
193 TTTTTTCTTT
53158 TTTAGCCCAT
Statistics
Matches: 170, Mismatches: 29, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
228 3 0.02
229 55 0.32
230 87 0.51
231 25 0.15
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.39
Consensus pattern (228 bp):
TTTTTTCTCTTTTTAAGCCCACACAAGTTGGTAGCACCACTTTCTTTTCAAAGCCCGCACAAGCT
AGCAACACATTTTTCTCTTTTTAAGCCCACACAAGTTACTAGCACCACTTTCTTTTATCCTTTTC
AAAGCCCACACAAGTTGGTAGCACCCCTTTCTTTTTAAAGCCCCGCACAAGCTAGTGGCACATTT
TTTCTTTGTAAGCCTTCATTGTTGGTGGCACTC
Found at i:53265 original size:40 final size:44
Alignment explanation
Indices: 53220--53307 Score: 121
Period size: 42 Copynumber: 2.1 Consensus size: 44
53210 TGTGGCACCA
* *
53220 TTTTAT-CTTTT-TAAGCCTACATAAGTTGGTGCCA-CCCTTT-
1 TTTTATCCTTTTCAAAGCCCACATAAGTTGGTGCCACCCCTTTC
*
53260 TTTTATCCTTTTCAAAGCCCACATAAGTTGGTGGCACCCCTTTC
1 TTTTATCCTTTTCAAAGCCCACATAAGTTGGTGCCACCCCTTTC
53304 TTTT
1 TTTT
53308 TAAAGCCCGT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
40 6 0.15
41 5 0.12
42 20 0.49
43 6 0.15
44 4 0.10
ACGTcount: A:0.19, C:0.25, G:0.12, T:0.43
Consensus pattern (44 bp):
TTTTATCCTTTTCAAAGCCCACATAAGTTGGTGCCACCCCTTTC
Found at i:53361 original size:305 final size:303
Alignment explanation
Indices: 52867--53431 Score: 773
Period size: 305 Copynumber: 1.9 Consensus size: 303
52857 GAGCCTACAT
* *
52867 AAGTTGGTGGCACCCCTTTCTTTTTAAAGCTCGCACAAGCTGGTGGCACATTTTTCTCTTTGTAA
1 AAGTTGGTGACACCCCTTTCCTTTTAAAGCTCGCACAAGCTGGTGGCACATTTTTCTCTTTGTAA
* * * * *
52932 GCCTTCATTGTTGGTGGCACTCTTTTTTTTCTTTTTAAAAGCCACATAAGTTGGTAGCACCACTT
66 GCCTACATAGTTGGTGCCACCCTTTTTTTTCCTTTTAAAAGCCACATAAGTTGGTAGCACCACTT
* *
52997 TCTTTTTAAAGCCCGCACAAGCTAGTAGCACCTTTTTCTCTTTTTAAGCCCACACAAGTTACTAG
131 TCTTTTTAAAGCCCGCACAAGCTAGTAGCACCTTATTCTCTTTTTAAGACCACACAAGTTACTAG
* *
53062 CACCATTTTCTTTTATCCTTTTCAAAGCCCACACAAGTTGGTAGCACC-CGTTTCTTTTTAAAGC
196 CACCACTTTCTTTTATCCTTTTCAAAGCCCAAACAAGTTGGTAGCACCTC-TTTCTTTTTAAAGC
53126 CCCCGCACAAGCTAGTGGTACCTTTTTTCTTTTTTAGCCCATAC
260 CCCCGCACAAGCTAGTGGTACCTTTTTTCTTTTTTAGCCCATAC
*
53170 AAGTTGGT-ACACCCCTTTCCTTTTAAAGCTCGCACAAGCTTGTGGCACCATTTTATCT-TTT-T
1 AAGTTGGTGACACCCCTTTCCTTTTAAAGCTCGCACAAGCTGGTGGCA-CATTTT-TCTCTTTGT
* *
53232 AAGCCTACATAAGTTGGTGCCACCCTTTTTTTATCCTTTTCAAAGCCCACATAAGTTGGTGGCAC
64 AAGCCTACAT-AGTTGGTGCCACCCTTTTTTT-TCCTTTTAAAAG-CCACATAAGTTGGTAGCAC
* * * *
53297 CCCTTTCTTTTTAAAGCCCGTATAAGCT-G-ATGACACCTTATTCTTTTTTTAAGACCACACAAG
126 CACTTTCTTTTTAAAGCCCGCACAAGCTAGTA-G-CACCTTATTCTCTTTTTAAGACCACACAAG
** * * * * * * *
53360 TTGGTGGCACCCCTTTCTTTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGTACCTCTTTCTTTT
189 TTACTAGCACCACTTTCTTTTATCCTTTTCAAAGCCCAAACAAGTTGGTAGCACCTCTTTCTTTT
53425 TAAAGCC
254 TAAAGCC
53432 TGCACAAGCT
Statistics
Matches: 227, Mismatches: 27, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
302 46 0.20
303 36 0.16
304 15 0.07
305 129 0.57
306 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.38
Consensus pattern (303 bp):
AAGTTGGTGACACCCCTTTCCTTTTAAAGCTCGCACAAGCTGGTGGCACATTTTTCTCTTTGTAA
GCCTACATAGTTGGTGCCACCCTTTTTTTTCCTTTTAAAAGCCACATAAGTTGGTAGCACCACTT
TCTTTTTAAAGCCCGCACAAGCTAGTAGCACCTTATTCTCTTTTTAAGACCACACAAGTTACTAG
CACCACTTTCTTTTATCCTTTTCAAAGCCCAAACAAGTTGGTAGCACCTCTTTCTTTTTAAAGCC
CCCGCACAAGCTAGTGGTACCTTTTTTCTTTTTTAGCCCATAC
Found at i:53425 original size:43 final size:44
Alignment explanation
Indices: 53341--53425 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
53331 ACCTTATTCT
* *
53341 TTTTTTAAGACCACACAAGTTGGTGGCACCCCTTTCTTTTTTTC
1 TTTTTAAAGACCAAACAAGTTGGTGGCACCCCTTTCTTTTTTTC
* * *
53385 TTTTTAAAGCCCAAACAAGTTGGTGGTACCTCTTTCTTTTT
1 TTTTTAAAGACCAAACAAGTTGGTGGCACCCCTTTCTTTTT
53426 AAAGCCTGCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.44
Consensus pattern (44 bp):
TTTTTAAAGACCAAACAAGTTGGTGGCACCCCTTTCTTTTTTTC
Found at i:53428 original size:117 final size:115
Alignment explanation
Indices: 53148--53441 Score: 328
Period size: 115 Copynumber: 2.6 Consensus size: 115
53138 TAGTGGTACC
* * * * *
53148 TTTTTTCTTTTT-TAGCCCATACAAGTTGGT-ACACCCCTTTCCTTTTAAAGCTCGCACAAGCTT
1 TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGCACAAGCTT
* *
53211 GTGGCACCATTTTATCTTTTTAAGCCTACATAAGTTGGTGCCACCCTTTT
66 GTGACACCATTTTATCTTTTTAAGCCTACACAAGTTGGTGCCACCCTTTT
* * * * * * *
53261 TTTATCCTTTTCAAAGCCCACATAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGTATAAGC-T
1 TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGCACAAGCTT
* * *
53325 GATGACACC-TTATTCTTTTTTTAAGACC-ACACAAGTTGGTGGCACCCCTTTCT
66 G-TGACACCATT-TTATCTTTTTAAG-CCTACACAAGTTGGTGCCA-CCCTTT-T
* * *
53378 TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGTACCTCTTTCTTTTTAAAGCCTGCACAAGCT
1 TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGCACAAGCT
53442 GGCAGCATTT
Statistics
Matches: 147, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
113 9 0.06
114 19 0.13
115 57 0.39
116 8 0.05
117 54 0.37
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (115 bp):
TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGCACAAGCTT
GTGACACCATTTTATCTTTTTAAGCCTACACAAGTTGGTGCCACCCTTTT
Found at i:53442 original size:117 final size:114
Alignment explanation
Indices: 53148--53519 Score: 322
Period size: 115 Copynumber: 3.3 Consensus size: 114
53138 TAGTGGTACC
* * * *
53148 TTTTTTCTTTTT-TAGCCCATACAAGTTGGT-ACACCCCTTTCCTTTTAAAG-CTCGCACAAGCT
1 TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCT-GCACAAGC-
* *
53210 TGTGGCACCATTTTATCTTTTTAAGCCTACATAAGTTGGTGCCACCCTTTT
64 TGTGACACCATTTTATCTTTTTAAGCCTACACAAGTTGGTGCCACCCTTTT
* * * * * * * *
53261 TTTATCCTTTTCAAAGCCCACATAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGTATAAGCTG
1 TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCTGCACAAGCTG
* * *
53326 ATGACACC-TTATTCTTTTTTTAAGACC-ACACAAGTTGGTGGCACCCCTTTCT
66 -TGACACCATT-TTATCTTTTTAAG-CCTACACAAGTTGGTGCCA-CCCTTT-T
* *
53378 TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGTACCTCTTTCTTTTTAAAGCCTGCACAAGCTG
1 TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCTGCACAAGCTG
* * * * * * *
53443 -G-CAGCATTTT-T-TTCTAAAGCCTGCAAAAGCTGGTGGCA-CCTTTT
66 TGACACCATTTTATCTTTTTAAGCCTACACAAGTTGGTGCCACCCTTTT
* * *
53487 TCTTTTC---TT-AATCCCACACAAGTTGGTGGCACC
1 TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACC
53520 TTTCTCTTTT
Statistics
Matches: 213, Mismatches: 36, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
105 21 0.10
106 2 0.01
109 7 0.03
110 5 0.02
111 2 0.01
112 19 0.09
113 10 0.05
114 24 0.11
115 58 0.27
116 9 0.04
117 56 0.26
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (114 bp):
TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCTGCACAAGCTG
TGACACCATTTTATCTTTTTAAGCCTACACAAGTTGGTGCCACCCTTTT
Found at i:53487 original size:32 final size:32
Alignment explanation
Indices: 53421--53489 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
53411 TACCTCTTTC
* **
53421 TTTT-TAAAGCCTGCACAAGCTGGCAGCATTT
1 TTTTCTAAAGCCTGCAAAAGCTGGCAGCACCT
**
53452 TTTTCTAAAGCCTGCAAAAGCTGGTGGCACCT
1 TTTTCTAAAGCCTGCAAAAGCTGGCAGCACCT
53484 TTTTCT
1 TTTTCT
53490 TTTCTTAATC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 4 0.12
32 28 0.88
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (32 bp):
TTTTCTAAAGCCTGCAAAAGCTGGCAGCACCT
Found at i:53490 original size:149 final size:150
Alignment explanation
Indices: 53320--53607 Score: 388
Period size: 149 Copynumber: 1.9 Consensus size: 150
53310 AAGCCCGTAT
*
53320 AAGCTGATGACACCTTATTCTTTTTTTAAGACCACACAAGTTGGTGGCACCCCTTTCT-TTTT-T
1 AAGCTGATGACACCTTATTCTTTTCTTAAGACCACACAAGTTGGTGGCA--CCTTTCTCTTTTAT
* * * ** *
53383 TCTTTTTAAAGCCCAAACAAGTTGGTGGTAC-CTCTTTCTTTTTAAAGCCTGCACAAGCTGGCA-
64 CCTTTTCAAAGCCCAAACAAGTTGGTGGCACTC-CTTTCTTTTTAAAGCCCACACAAGCCGG-AG
53446 GCA-TTTTTTTCTAAAGCCTGCAA
127 GCACTTTTTTTCTAAAGCCTGCAA
* * * **
53469 AAGCTGGTGGCACCTTTTTCTTTTCTTAATCCCACACAAGTTGGTGGCACCTTTCTCTTTTATCC
1 AAGCTGATGACACCTTATTCTTTTCTTAAGACCACACAAGTTGGTGGCACCTTTCTCTTTTATCC
*
53534 TTTTCAAAGCCCACACAAGTTGGTGGCACTCCTTTCTTTTTAAAGCCCACACAAGCCGGAGGCAC
66 TTTTCAAAGCCCAAACAAGTTGGTGGCACTCCTTTCTTTTTAAAGCCCACACAAGCCGGAGGCAC
53599 TTTTTTTCT
131 TTTTTTTCT
53608 CTTTTCAAGC
Statistics
Matches: 121, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
147 7 0.06
148 5 0.04
149 99 0.82
150 10 0.08
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (150 bp):
AAGCTGATGACACCTTATTCTTTTCTTAAGACCACACAAGTTGGTGGCACCTTTCTCTTTTATCC
TTTTCAAAGCCCAAACAAGTTGGTGGCACTCCTTTCTTTTTAAAGCCCACACAAGCCGGAGGCAC
TTTTTTTCTAAAGCCTGCAA
Found at i:53718 original size:115 final size:112
Alignment explanation
Indices: 53477--53788 Score: 305
Period size: 112 Copynumber: 2.7 Consensus size: 112
53467 AAAAGCTGGT
* * * *
53477 GGCACCTTTTTCT-TTTCTTAATCCCACACAAGTTGGTGGCACCTTTCTCTTTTATCCTTT-TCA
1 GGCA-CTTTTTCTCTTT-TCAAGCCCACACAAGTTGGGGGCACC-TT-T-TTTT-T-CTTTATTA
*
53540 AAGCCCACACAAGTTGGTGGCACTCCTTTCTTTTTAAAGCCCACACAAGCCGGA
59 AAGCCCACACAAGTTGGTGGCACTCCCTTCTTTTTAAAGCCCACACAAGCCGGA
*
53594 GGCACTTTTTTTCTCTTTTCAAGCCCACATAAGTTGGTGGCGC-CCTTTTTTTT-TCTTATTAAA
1 GGCAC--TTTTTCTCTTTTCAAGCCCACACAAGTTGG-GG-GCACCTTTTTTTTCT-TTATTAAA
** * * *
53657 GCTTACACAAGTTGGTGAG-AC-CCCTTCTTTTTAAAGCCTACGCAAGCTGGCA
61 GCCCACACAAGTTGGTG-GCACTCCCTTCTTTTTAAAGCCCACACAAGCCGG-A
* * *
53709 -GCACCTTTTTCTCTTTTTAATCCCACACAAGTTGGGGGCACCTTTTTTTTCTTTTTTAAAGCCC
1 GGCA-CTTTTTCTCTTTTCAAGCCCACACAAGTTGGGGGCACCTTTTTTTTCTTTATTAAAGCCC
*
53773 ACAGAAGTTGGTGGCA
65 ACACAAGTTGGTGGCA
53789 TCATCTTTAA
Statistics
Matches: 164, Mismatches: 18, Indels: 31
0.77 0.08 0.15
Matches are distributed among these distances:
111 3 0.02
112 34 0.21
113 29 0.18
114 30 0.18
115 24 0.15
116 6 0.04
117 5 0.03
118 25 0.15
119 6 0.04
120 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.37
Consensus pattern (112 bp):
GGCACTTTTTCTCTTTTCAAGCCCACACAAGTTGGGGGCACCTTTTTTTTCTTTATTAAAGCCCA
CACAAGTTGGTGGCACTCCCTTCTTTTTAAAGCCCACACAAGCCGGA
Found at i:54479 original size:20 final size:20
Alignment explanation
Indices: 54442--54495 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
54432 TTTTACAATT
54442 TGTATCGATACAATAAGTAAA
1 TGTATCGATAC-ATAAGTAAA
* *
54463 TGTATCGAAACATAAGTTAA
1 TGTATCGATACATAAGTAAA
54483 TGTATCGATACAT
1 TGTATCGATACAT
54496 GTCTAAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 20 0.67
21 10 0.33
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATAAGTAAA
Found at i:55903 original size:13 final size:13
Alignment explanation
Indices: 55885--55941 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
55875 CATAAAGTGT
55885 TGTATCGATACAA
1 TGTATCGATACAA
55898 TGTATCGATACATAA
1 TGTATCGATAC--AA
55913 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
55930 TGTATCGATACA
1 TGTATCGATACA
55942 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:55920 original size:32 final size:32
Alignment explanation
Indices: 55865--55962 Score: 178
Period size: 32 Copynumber: 3.0 Consensus size: 32
55855 TTCAACGATT
55865 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
55898 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
55930 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
55962 T
1 T
55963 ATAAGCTACT
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
32 51 0.80
33 13 0.20
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:55922 original size:19 final size:18
Alignment explanation
Indices: 55863--55960 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
55853 ATTTCAACGA
55863 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
55882 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
55898 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
55914 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
55930 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
55946 TTTTGTATCGATACA
1 -TTTGTATCGATACA
55961 ATATAAGCTA
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
15 4 0.06
17 4 0.06
19 24 0.36
20 12 0.18
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:56021 original size:13 final size:13
Alignment explanation
Indices: 56003--56027 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
55993 ATTACTCAAA
56003 TGTATCGATACAT
1 TGTATCGATACAT
56016 TGTATCGATACA
1 TGTATCGATACA
56028 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:56092 original size:52 final size:52
Alignment explanation
Indices: 56036--56164 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
56026 CACTGATCTT
*
56036 TGTATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATACAGTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACAGTATAAAA
* * *
56088 TGTATCGATACATGGAGGCAAATTTGCCCAGATGTATCGATACATTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACAGTATAAAA
*
56140 TGTATCGATACATGCAAGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
56165 TCATATTTCG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACAGTATAAAA
Found at i:60449 original size:52 final size:52
Alignment explanation
Indices: 60379--60499 Score: 206
Period size: 52 Copynumber: 2.3 Consensus size: 52
60369 GAAAATTTAT
*
60379 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
* *
60431 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAATTTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
60483 CTGCATGTATTGATACA
1 CTGCATGTATCGATACA
60500 AAGATCAATG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:60510 original size:52 final size:52
Alignment explanation
Indices: 60379--60519 Score: 187
Period size: 52 Copynumber: 2.7 Consensus size: 52
60369 GAAAATTTAT
* *
60379 CTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TAAGATAATGTATCGATACATCTGGGCAAATTTGC
*** *
60431 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAATTTTGC
1 CTGCATGTATCGATACATAAGATAATGTATCGATACATCTGGGCAAATTTGC
*
60483 CTGCATGTATTGATACA-AAGATCAATGTATCGATACA
1 CTGCATGTATCGATACATAAGAT-AATGTATCGATACA
60520 ATGTATCGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 4 0.05
52 76 0.95
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATAAGATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:60523 original size:13 final size:13
Alignment explanation
Indices: 60505--60532 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
60495 ATACAAAGAT
60505 CAATGTATCGATA
1 CAATGTATCGATA
60518 CAATGTATCGATA
1 CAATGTATCGATA
60531 CA
1 CA
60533 TTTGAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:60614 original size:13 final size:13
Alignment explanation
Indices: 60596--60620 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60586 CAAAAAAATA
60596 TGTATCGATACAT
1 TGTATCGATACAT
60609 TGTATCGATACA
1 TGTATCGATACA
60621 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:60616 original size:33 final size:33
Alignment explanation
Indices: 60574--60640 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
60564 AGTAGCTTAA
60574 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
60607 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
60640 A
1 A
60641 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:64151 original size:79 final size:78
Alignment explanation
Indices: 64068--64546 Score: 402
Period size: 79 Copynumber: 6.1 Consensus size: 78
64058 CATTTCCCAA
*
64068 GGGATACTCCAACCCCGTTTTTACTTCCCAAATATTAAATTTTTCATCTTGGGGATACTCCAACC
1 GGGATACTCCAACCCCGTTTTTACTTCCAAAATATTAAATTTTTCATCTTGGGGATACTCCAACC
* ** *
64133 CCACCATCACTAAG
66 CCATCAT-TTTGAG
* * * ** * * * *
64147 GGGATACTTCGACTCTATTTTTATTTTCAAAATATT-GATTTTTCA-CTATCAGGGATACTCCAA
1 GGGATACTCCAACCCCGTTTTTACTTCCAAAATATTAAATTTTTCATCT-T-GGGGATACTCCAA
64210 CCCCATCATTTTCGAG
64 CCCCATCATTTT-GAG
** *
64226 GGGATACTCCAACCATGTTTTTACTTCCAAAATATTGAAA-TTTTCATCTTGGGGATACTCCGAC
1 GGGATACTCCAACCCCGTTTTTACTTCCAAAATATT-AAATTTTTCATCTTGGGGATACTCCAAC
* *
64290 CCCACCATCTATGAG
65 CCCATCAT-TTTGAG
* * * * *
64305 GGGATACTCCAACCCC-ATTTTATTTTCAAAATATT-AATTTTTCACCATTGAGGATACTCCAAC
1 GGGATACTCCAACCCCGTTTTTACTTCCAAAATATTAAATTTTTCATC-TTGGGGATACTCCAAC
* *
64368 CCTATCATTTTTCAG
65 CCCATCA-TTTTGAG
*** ** *
64383 GGGATACTCCAACCTTTTTTTTA-TTATTAAAATATCAAATTTTTACCATC--GGGGATACTCCA
1 GGGATACTCCAACCCCGTTTTTACTT-CCAAAATATTAAATTTTT--CATCTTGGGGATACTCCA
*
64445 ACACCATCATTTTCGAG
63 ACCCCATCATTTT-GAG
* * * * * *
64462 AGGATACTCCAACCCCCTTTTTACTTCCAAAATATTAAATTTATAATCATCGAAGG-TACTCCAA
1 GGGATACTCCAACCCCGTTTTTACTTCCAAAATATTAAATTTTTCATC-TTG-GGGATACTCCAA
*
64526 CCCCAT-ATTCTGAG
64 CCCCATCATTTTGAG
64540 GGGATAC
1 GGGATAC
64547 ACCATCCATG
Statistics
Matches: 318, Mismatches: 61, Indels: 43
0.75 0.14 0.10
Matches are distributed among these distances:
76 2 0.01
77 12 0.04
78 78 0.25
79 186 0.58
80 32 0.10
81 5 0.02
82 3 0.01
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (78 bp):
GGGATACTCCAACCCCGTTTTTACTTCCAAAATATTAAATTTTTCATCTTGGGGATACTCCAACC
CCATCATTTTGAG
Found at i:64310 original size:158 final size:156
Alignment explanation
Indices: 64022--64556 Score: 503
Period size: 158 Copynumber: 3.4 Consensus size: 156
64012 TTCCAAAAGC
* * ** * * **
64022 ATTGATTTTTCACCATCGGGGATACTCTAACTACATCATTTCCCAAGGGATACTCCAACCCCGTT
1 ATTGATTTTTCACCATCAGGGATACTCCAACCCCATCATTT-TCAGGGGATACTCCAACCATGTT
*
64087 TTTACTTCCCAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCCACCATCACTAAGGGGAT
65 TTTACTTCCAAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCCACCATCACTAAGGGGAT
* * * *
64152 ACTTCGACTCTATTTTTATTTTCAAAAT
130 ACTCCAACCCCA-TTTTATTTTCAAAAT
*
64180 ATTGATTTTTCACTATCAGGGATACTCCAACCCCATCATTTTCGAGGGGATACTCCAACCATGTT
1 ATTGATTTTTCACCATCAGGGATACTCCAACCCCATCATTTTC-AGGGGATACTCCAACCATGTT
* *
64245 TTTACTTCCAAAATATTGAAA-TTTTCATCTTGGGGATACTCCGACCCCACCATCTA-TGAGGGG
65 TTTACTTCCAAAATATT-AAATTTTTCATCTTGGGGATACTCCAACCCCACCATC-ACTAAGGGG
64308 ATACTCCAACCCCATTTTATTTTCAAAAT
128 ATACTCCAACCCCATTTTATTTTCAAAAT
* * * * *
64337 ATTAATTTTTCACCAT-TGAGGATACTCCAACCCTATCATTTTTCAGGGGATACTCCAACCTTTT
1 ATTGATTTTTCACCATCAG-GGATACTCCAACCCCATCA-TTTTCAGGGGATACTCCAACCATGT
** * * * ** *
64401 TTTTA-TTATTAAAATATCAAATTTTTACCATC--GGGGATACTCCAACACCATCAT-TTTCGAG
64 TTTTACTT-CCAAAATATTAAATTTTT--CATCTTGGGGATACTCCAACCCCACCATCACT-AAG
* * * *
64462 AGGATACTCCAACCCCCTTTTTACTTCCAAAAT
125 GGGATACTCCAA-CCCCATTTTATTTTCAAAAT
* * * * * * * * *
64495 ATTAAATTTATAATCATCGAAGG-TACTCCAACCCCAT-ATTCTGAGGGGATACACCATCCATG
1 ATT-GATTTTTCACCATC-AGGGATACTCCAACCCCATCATTTTCAGGGGATACTCCAACCATG
64557 ATCTTTACCA
Statistics
Matches: 317, Mismatches: 45, Indels: 31
0.81 0.11 0.08
Matches are distributed among these distances:
156 7 0.02
157 133 0.42
158 144 0.45
159 31 0.10
160 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (156 bp):
ATTGATTTTTCACCATCAGGGATACTCCAACCCCATCATTTTCAGGGGATACTCCAACCATGTTT
TTACTTCCAAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCCACCATCACTAAGGGGATA
CTCCAACCCCATTTTATTTTCAAAAT
Found at i:64454 original size:236 final size:236
Alignment explanation
Indices: 64068--64503 Score: 576
Period size: 236 Copynumber: 1.8 Consensus size: 236
64058 CATTTCCCAA
* * * *
64068 GGGATACTCCAACCCCGTTTTTACTTCCCAAATATTAAATTTTTCATCTTGGGGATACTCCAACC
1 GGGATACTCCAACCCCGATTTTACTTCCAAAATATTAAATTTTTCACCTTGAGGATACTCCAACC
* * ** *
64133 CCACCATCACTAAGGGGATACTTCGACTCTATTTTTATTTTCAAAATATTGATTTTTCACTATCA
66 CCACCATCACTAAGGGGATACTCCAACTCTATTTTTATTTTCAAAATATAAATTTTTCACCATCA
* * **
64198 GGGATACTCCAACCCCATCATTTTCGAGGGGATACTCCAACCATGTTTTTACTTCCAAAATATTG
131 GGGATACTCCAACACCATCATTTTCGAGAGGATACTCCAACCACCTTTTTACTTCCAAAATATT-
64263 AAATTTTCATCTTGGGGATACTCCGACCCCACCATCTATGAG
195 AAATTTTCATCTTGGGGATACTCCGACCCCACCATCTATGAG
* *
64305 GGGATACTCCAACCCC-ATTTTATTTTCAAAATATT-AATTTTTCACCATTGAGGATACTCCAAC
1 GGGATACTCCAACCCCGATTTTACTTCCAAAATATTAAATTTTTCACC-TTGAGGATACTCCAAC
* * *** * *
64368 CCTATCATTTTTCAGGGGATACTCCAAC-CTTTTTTTTATTATT-AAAATATCAAATTTTT-ACC
65 CCCACCATCACTAAGGGGATACTCCAACTC-TATTTTTATT-TTCAAAATAT-AAATTTTTCACC
* *
64430 ATCGGGGATACTCCAACACCATCATTTTCGAGAGGATACTCCAACCCCCTTTTTACTTCCAAAAT
127 ATCAGGGATACTCCAACACCATCATTTTCGAGAGGATACTCCAACCACCTTTTTACTTCCAAAAT
64495 ATTAAATTT
192 ATTAAATTT
64504 ATAATCATCG
Statistics
Matches: 171, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
235 17 0.10
236 130 0.76
237 24 0.14
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (236 bp):
GGGATACTCCAACCCCGATTTTACTTCCAAAATATTAAATTTTTCACCTTGAGGATACTCCAACC
CCACCATCACTAAGGGGATACTCCAACTCTATTTTTATTTTCAAAATATAAATTTTTCACCATCA
GGGATACTCCAACACCATCATTTTCGAGAGGATACTCCAACCACCTTTTTACTTCCAAAATATTA
AATTTTCATCTTGGGGATACTCCGACCCCACCATCTATGAG
Found at i:64542 original size:157 final size:156
Alignment explanation
Indices: 64068--64556 Score: 427
Period size: 157 Copynumber: 3.1 Consensus size: 156
64058 CATTTCCCAA
** * * *
64068 GGGATACTCCAACCCCGTTTTTACTTCCCAAATATT-AAATTTTTCATCTTGGGGATACTCCAAC
1 GGGATACTCCAACCATGTTTTTACTTCCAAAATATTCAAA-TTTTCACCTCGGGGATACTCCAAC
* * * * * * * * * * * * *
64132 CCCACCATC-ACTAAGGGGATACTTCGACTCTATTTTTATTTTCAAAATATTGATTTTTCACTAT
65 ACCACCATCTA-TGAGAGGATACTCCAACCCCA-TTTTACTTCCAAAATATTAATTTATAACCAT
64196 C-AGGGATACTCCAACCCCATCATTTTCGAG
128 CGA-GGATACTCCAACCCCATCATTTT-GAG
* * * * *
64226 GGGATACTCCAACCATGTTTTTACTTCCAAAATATTGAAATTTTCATCTTGGGGATACTCCGACC
1 GGGATACTCCAACCATGTTTTTACTTCCAAAATATTCAAATTTTCACCTCGGGGATACTCCAACA
* * * * * *
64291 CCACCATCTATGAGGGGATACTCCAACCCCATTTTATTTTCAAAATATTAATTTTTCACCATTGA
66 CCACCATCTATGAGAGGATACTCCAACCCCATTTTACTTCCAAAATATTAATTTATAACCATCGA
* *
64356 GGATACTCCAACCCTATCATTTTTCAG
131 GGATACTCCAACCCCATCA-TTTTGAG
* * ** *
64383 GGGATACTCCAACCTTTTTTTTA-TTATTAAAATA-TCAAATTTTTACCATCGGGGATACTCCAA
1 GGGATACTCCAACCATGTTTTTACTT-CCAAAATATTCAAATTTTCACC-TCGGGGATACTCCAA
* * * *
64446 CACCATCAT-TTTCGAGAGGATACTCCAACCCCCTTTTTACTTCCAAAATATTAAATTTATAATC
64 CACCACCATCTAT-GAGAGGATACTCCAA-CCCCATTTTACTTCCAAAATATT-AATTTATAACC
*
64510 ATCGAAGG-TACTCCAACCCCAT-ATTCTGAG
126 ATCG-AGGATACTCCAACCCCATCATTTTGAG
* *
64540 GGGATACACCATCCATG
1 GGGATACTCCAACCATG
64557 ATCTTTACCA
Statistics
Matches: 280, Mismatches: 41, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
156 14 0.05
157 128 0.46
158 107 0.38
159 28 0.10
160 3 0.01
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (156 bp):
GGGATACTCCAACCATGTTTTTACTTCCAAAATATTCAAATTTTCACCTCGGGGATACTCCAACA
CCACCATCTATGAGAGGATACTCCAACCCCATTTTACTTCCAAAATATTAATTTATAACCATCGA
GGATACTCCAACCCCATCATTTTGAG
Found at i:66086 original size:83 final size:83
Alignment explanation
Indices: 65957--66116 Score: 266
Period size: 83 Copynumber: 1.9 Consensus size: 83
65947 CCTTTGTCAC
* * *
65957 AACGTGCACTCGACCCCGGCGATAGAGCAAATGAGGCGCGCTCGACTTAATATCCCTCGTGATTG
1 AACGTGCACTCGACCCCGGCGATAGAGCAAATGAGGCACGCCCGACTTAATATCCCTCGCGATTG
66022 GGGATTTCTATGTGTCGT
66 GGGATTTCTATGTGTCGT
* * *
66040 AACGTGCGCTCGACCCCGGCGATAGGGCAAATGAGGCATGCCCGACTTAATATCCCTCGCGATTG
1 AACGTGCACTCGACCCCGGCGATAGAGCAAATGAGGCACGCCCGACTTAATATCCCTCGCGATTG
66105 GGGATTTCTATG
66 GGGATTTCTATG
66117 GCATGATGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 71 1.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (83 bp):
AACGTGCACTCGACCCCGGCGATAGAGCAAATGAGGCACGCCCGACTTAATATCCCTCGCGATTG
GGGATTTCTATGTGTCGT
Found at i:69189 original size:52 final size:52
Alignment explanation
Indices: 69109--69228 Score: 213
Period size: 52 Copynumber: 2.3 Consensus size: 52
69099 AAAAGTTGTT
*
69109 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGCAAATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGCAAATTTGCC
* *
69161 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGCAAATTTGCC
69213 TGCATGTATCGATACA
1 TGCATGTATCGATACA
69229 AAGATCAGTG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (52 bp):
TGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGCAAATTTGCC
Found at i:69241 original size:52 final size:51
Alignment explanation
Indices: 69109--69248 Score: 201
Period size: 52 Copynumber: 2.7 Consensus size: 51
69099 AAAAGTTGTT
69109 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGCAAATTTGCC
1 TGCATGTATCGATACA-TTAATAGTGTATCGATACATCTAGGCAAATTTGCC
* * *
69161 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACA-TTAATAGTGTATCGATACATCTAGGCAAATTTGCC
*
69213 TGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TGCATGTATCGATACATTA-AT-AGTGTATCGATACA
69249 ATGTATCGAT
Statistics
Matches: 80, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.03
52 78 0.98
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (51 bp):
TGCATGTATCGATACATTAATAGTGTATCGATACATCTAGGCAAATTTGCC
Found at i:69255 original size:13 final size:13
Alignment explanation
Indices: 69237--69261 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69227 CAAAGATCAG
69237 TGTATCGATACAA
1 TGTATCGATACAA
69250 TGTATCGATACA
1 TGTATCGATACA
69262 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:69331 original size:20 final size:20
Alignment explanation
Indices: 69302--69359 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
69292 GCAGTAGCTT
69302 AAAT-TGTATCGATACAAAA
1 AAATATGTATCGATACAAAA
*
69321 AAATATGTATCGATACAACA
1 AAATATGTATCGATACAAAA
***
69341 TTTTATGTATCGATACAAA
1 AAATATGTATCGATACAAA
69360 TCGTTGAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (20 bp):
AAATATGTATCGATACAAAA
Found at i:70408 original size:43 final size:43
Alignment explanation
Indices: 70347--70432 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
70337 GATGGAAAAT
* *
70347 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCTACATTAGACTTAAAG
*
70390 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCTACATTAGACTTAAAG
70433 ATGAAGATGA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (43 bp):
GTGCCAATATGCTGATTCAAGGCCAGCTACATTAGACTTAAAG
Found at i:70537 original size:56 final size:52
Alignment explanation
Indices: 70453--71087 Score: 597
Period size: 48 Copynumber: 12.8 Consensus size: 52
70443 GAAAAGTGAT
* * * * * *
70453 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGATGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG--G-A
* * * *
70508 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
*
70561 AAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
70604 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* **
70654 --AGGTGCCAATGTGCTGATTCAAGGCCAGCTACGTTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * * *
70702 -AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGGCTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
70751 --AGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * * *
70799 -AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGGCTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
70848 --AGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * * *
70896 -AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGGCTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
70945 --AGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
70993 -AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
*
71044 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
71088 GAGGGGTTGC
Statistics
Matches: 533, Mismatches: 32, Indels: 33
0.89 0.05 0.06
Matches are distributed among these distances:
43 38 0.07
44 1 0.00
46 1 0.00
48 187 0.35
49 187 0.35
50 1 0.00
51 1 0.00
52 70 0.13
53 6 0.01
54 1 0.00
55 4 0.01
56 36 0.07
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
Found at i:70640 original size:218 final size:222
Alignment explanation
Indices: 70160--70650 Score: 803
Period size: 227 Copynumber: 2.2 Consensus size: 222
70150 AGAGATGATG
* * * *
70160 AAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAATATGAAGATGAGAAAAGTGA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGAGAAAAGTGA
*
70225 TAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGATGTC
66 TAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGATGTC
*
70290 AACGTGCTGATTCAAGGCCAGCTACATTGAACTACATTGAACTTAAAGATGGAAAATGTGCCAAT
131 AACGTGCTGATTCAAGG-C-GC-ACA-TG-ACTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
70355 ATGCTGATTCAAGGCCAGCTATATTGGACTTA
191 ATGCTGATTCAAGGCCAGCTATATTGGACTTA
*
70387 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGATGAAGATGAGAAAAGTGA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGAGAAAAGTGA
*
70452 TAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGATGAAAAAGGATGT
66 TAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCCTAAAGATGA-GAAAAAGGATGT
* *
70517 CAATGTGCTGATTCAA-G-GC-CA-G-CTACATTGAACTTAAAGATGGAAAAGGTGCCGATATGC
130 CAACGTGCTGATTCAAGGCGCACATGACTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGC
70577 TGATTCAAGGCCAGCTATATTGGACTTA
195 TGATTCAAGGCCAGCTATATTGGACTTA
70605 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
70651 GTGAGGTGCC
Statistics
Matches: 252, Mismatches: 11, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
218 109 0.43
220 1 0.00
222 2 0.01
224 2 0.01
227 111 0.44
228 27 0.11
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (222 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGAGAAAAGTGA
TAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGATGTC
AACGTGCTGATTCAAGGCGCACATGACTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCT
GATTCAAGGCCAGCTATATTGGACTTA
Found at i:70726 original size:49 final size:49
Alignment explanation
Indices: 70517--71087 Score: 865
Period size: 48 Copynumber: 11.7 Consensus size: 49
70507 AAAAGGATGT
* *
70517 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * * *
70569 CGATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
70612 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
70660 CAATGTGCTGATTCAAGGCCAGCTACGTTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
70709 CAATGTGCTGAGTCAAGGCCAGCTACATTGGGCTTAAAGATG-AGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
70757 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
70806 CAATGTGCTGAGTCAAGGCCAGCTACATTGGGCTTAAAGATG-AGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
70854 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
70903 CAATGTGCTGAGTCAAGGCCAGCTACATTGGGCTTAAAGATG-AGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
70951 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
71000 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * * *
71052 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
71088 GAGGGGTTGC
Statistics
Matches: 484, Mismatches: 22, Indels: 26
0.91 0.04 0.05
Matches are distributed among these distances:
43 39 0.08
48 188 0.39
49 186 0.38
50 1 0.00
52 70 0.14
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (49 bp):
CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:70745 original size:97 final size:97
Alignment explanation
Indices: 70517--71087 Score: 875
Period size: 97 Copynumber: 5.9 Consensus size: 97
70507 AAAAGGATGT
* * * * *
70517 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCGATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G---AGGTGCCAATGTGCTGAGT
*
70582 CAAGGCCAGCTATATTGGACTT----A--AAGGTGC
62 CAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
70612 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGCCAATGTGCTGATTCAAG
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAGGTGCCAATGTGCTGAGTCAAG
*
70677 GCCAGCTACGTTGGACTTAAAGATGAAGGTGC
66 GCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
70709 CAATGTGCTGAGTCAAGGCCAGCTACATTGGGCTTAAAGATGAGGTGCCAATGTGCTGAGTCAAG
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAGGTGCCAATGTGCTGAGTCAAG
70774 GCCAGCTACATTGGACTTAAAGATGAAGGTGC
66 GCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
70806 CAATGTGCTGAGTCAAGGCCAGCTACATTGGGCTTAAAGATGAGGTGCCAATGTGCTGAGTCAAG
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAGGTGCCAATGTGCTGAGTCAAG
70871 GCCAGCTACATTGGACTTAAAGATGAAGGTGC
66 GCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
70903 CAATGTGCTGAGTCAAGGCCAGCTACATTGGGCTTAAAGATGAGGTGCCAATGTGCTGAGTCAAG
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAGGTGCCAATGTGCTGAGTCAAG
70968 GCCAGCTACATTGGACTTAAAGATGAAGGTGC
66 GCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
71000 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G---AGGTGCCAATGTGCTGAGT
* *
71065 CAAGGCCAGCTATATTGGGCTTA
62 CAAGGCCAGCTACATTGGACTTA
71088 GAGGGGTTGC
Statistics
Matches: 450, Mismatches: 16, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
91 37 0.08
94 1 0.00
95 40 0.09
97 333 0.74
98 1 0.00
101 38 0.08
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (97 bp):
CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAGGTGCCAATGTGCTGAGTCAAG
GCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:71188 original size:32 final size:33
Alignment explanation
Indices: 71092--71184 Score: 163
Period size: 33 Copynumber: 2.8 Consensus size: 33
71082 GGCTTAGAGG
71092 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
71125 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAG-A
1 GGTTGCCACCGACTTGTGTGGGCTTT-GGAAGAA
71158 -GTTGCCACCGACTTGTGTGGGCTTTGG
1 GGTTGCCACCGACTTGTGTGGGCTTTGG
71185 GAAGGAAAAA
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
31 2 0.03
32 25 0.42
33 27 0.46
34 5 0.08
ACGTcount: A:0.15, C:0.19, G:0.37, T:0.29
Consensus pattern (33 bp):
GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
Found at i:71262 original size:34 final size:34
Alignment explanation
Indices: 71191--71969 Score: 758
Period size: 34 Copynumber: 22.9 Consensus size: 34
71181 TTGGGAAGGA
*
71191 AAAAAGA-TGCCACGGAGTTGTGGAC-TTAAAAGGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA--G
*
71225 AAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
71259 AAAAA-AGTACCACGGAGTTGTGGGCTTTGAAAAGGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA--G
*
71295 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-AG
71330 AAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA--G
* **
71366 AAAGAGAGTGCCACAAAGTTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
71400 AAGAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
* * * *
71434 AAGAAG-GTTGCCACCGACTTGTGTGGGCTTTAGGAAGGG
1 AAAAAGAG-TGCCACGGA-GT-TGTGGGCTTTA--AA-AG
* *
71473 AGAAAGA-TGCCACGGAGTTGTGGAC-TTAAAAGGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA--G
71507 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
71541 AAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA--G
71577 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-AG
* *
71612 AAAAAG-GTGCCACAGAGTTATGGGCTTTGAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
*
71646 AAGAAAGAGTGCCACGAAGTTGTGGGCTTTAAAAG
1 AA-AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
71681 AAAAAG-GTGCCACGGAGTTGTAGGCTTTGAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
*
71715 AAGAAG-GTGCCACGGAGTTGTGGGCTTTTTAAAA-
1 AAAAAGAGTGCCACGGAGTTGTGGGC--TTTAAAAG
*
71749 AAGAAG-GTGCCACGGAGTTGTGGGCTTTTTAAAA-
1 AAAAAGAGTGCCACGGAGTTGTGGGC--TTTAAAAG
*
71783 AAGAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-G
**
71818 AAAAAAGAGTGCCACAAAGTTGTGGGCTTTAAAAG
1 -AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
71853 -----G-GTGCCACGGAGTTGTGGAC-TTAAAGATG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A-G
* *
71882 AAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
71916 -----G-GTGCCACGGAATTGTGGGCTTT-AAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
* * *
71943 AAAAA-A-TGCCACTGAGTCGTGGACTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT
71970 GAGACAAAAT
Statistics
Matches: 643, Mismatches: 48, Indels: 111
0.80 0.06 0.14
Matches are distributed among these distances:
27 9 0.01
28 39 0.06
29 2 0.00
31 17 0.03
32 3 0.00
33 89 0.14
34 190 0.30
35 98 0.15
36 85 0.13
37 96 0.15
38 10 0.02
39 5 0.01
ACGTcount: A:0.33, C:0.12, G:0.33, T:0.21
Consensus pattern (34 bp):
AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
Found at i:71264 original size:70 final size:70
Alignment explanation
Indices: 71191--71917 Score: 808
Period size: 70 Copynumber: 10.5 Consensus size: 70
71181 TTGGGAAGGA
* * *
71191 AAAAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
71254 AAAAG
66 AAAAG
* *
71259 AAAAAAGTACCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
*
71324 AAACGG
66 AAA-AG
* * **
71330 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAGAGAGTGCCACAAAGTTGTGGGCTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
71395 AAAAG
66 AAAAG
* * * *
71400 AAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAA--GAAGAAG-GTTGCCACCGACTTGTGTGGGC
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAG-TGCCACGGA-GT-TGTGGGC
*
71462 TTTAGGAAGGG
63 TTTA--AA-AG
* * *
71473 AGAAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
71536 AAAAG
66 AAAAG
71541 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
71606 AAACAG
66 AAA-AG
* * *
71612 AAAAAGGTGCCACAGAGTTATGGGCTTTGAAAA--GAAGAAAGAGTGCCACGAAGTTGTGGGCTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA-AAAGAGTGCCACGGAGTTGTGGGCTT
71675 TAAAAG
65 TAAAAG
* *
71681 AAAAAGGTGCCACGGAGTTGTAGGCTTTGAAAA--GAAGAAG-GTGCCACGGAGTTGTGGGCTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGC--T
71743 TTAAAA-
64 TTAAAAG
* * *
71749 AAGAAGGTGCCACGGAGTTGTGGGCTTTTTAAAA---AAGAAG-GTGCCACGGAGTTGTGGGCTT
1 AAAAAGGTGCCACGGAGTTGTGGGC-TTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
71810 TGAAAAGG
65 T-AAAA-G
** *
71818 AAAAAAGAGTGCCACAAAGTTGTGGGCTTT-AAAA--G-----G-GTGCCACGGAGTTGTGGAC-
1 -AAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCT
71873 TTAAAGATG
64 TTAAA-A-G
* *
71882 AAAAAAAGTGCCACGGAATTGTGGGCTTT-AAAAGGG
1 -AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGG
71918 TGCCACGGAA
Statistics
Matches: 579, Mismatches: 52, Indels: 59
0.84 0.08 0.09
Matches are distributed among these distances:
63 26 0.04
64 10 0.02
65 20 0.03
66 3 0.01
67 23 0.04
68 107 0.18
69 63 0.11
70 157 0.27
71 128 0.22
72 5 0.01
73 36 0.06
74 1 0.00
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.21
Consensus pattern (70 bp):
AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
AAAAG
Found at i:71377 original size:141 final size:137
Alignment explanation
Indices: 71191--71917 Score: 833
Period size: 141 Copynumber: 5.3 Consensus size: 137
71181 TTGGGAAGGA
* *
71191 AAAAAGATGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTA
* *
71255 AAAGAAAAAAGTACCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGG
66 AAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA--GAAAAAG-GTGCCACGGAGTTGTGGG
71320 CTTTAAACGG
128 CTTTAAACGG
* *
71330 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAGAGAGTGCCACAAAGTTGTGGGCTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTT
* * * *
71395 AAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAGGTTGCCACCGACTTGTGTGG
65 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAGG-TGCCACGGA-GT-TGTGG
*
71460 GCTTTAGGAAGGG
127 GCTTTA--AACGG
* * * *
71473 AGAAAGATGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTA
71537 AAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGG
66 AAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA--GAAAAAG-GTGCCACGGAGTTGTGGG
*
71602 CTTTAAACAG
128 CTTTAAACGG
* *
71612 AAAAAGGTGCCACAGAGTTATGGGCTTTGAAAA--GAAGAAAGAGTGCCAC-GAAGTTGTGGGCT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAAGGGAA-AAAGAGTGCCACAG-AGTTGTGGGCT
* *
71674 TTAAAAGAAAAAGGTGCCACGGAGTTGTAGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGG
63 TTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGG
71739 CTTTTTAAA---
128 C--TTTAAACGG
* *
71748 AAAGAAGGTGCCACGGAGTTGTGGGCTTTTTAAAA---AAGAAG-GTGCCACGGAGTTGTGGGCT
1 AAA-AAGGTGCCACGGAGTTGTGGGC--TTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCT
**
71809 TTGAAAAGGAAAAAAGAGTGCCACAAAGTTGTGGGCTTT-AAAAG-----GGTGCCACGGAGTTG
63 TT-AAAA-G-AAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTG
* * * *
71868 TGGACTTAAAGATGA
124 TGGGCTTTAA-ACGG
* *
71883 AAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGG
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGG
71918 TGCCACGGAA
Statistics
Matches: 517, Mismatches: 40, Indels: 66
0.83 0.06 0.11
Matches are distributed among these distances:
131 4 0.01
132 8 0.02
133 19 0.04
134 20 0.04
135 23 0.04
136 11 0.02
137 42 0.08
138 22 0.04
139 92 0.18
140 67 0.13
141 165 0.32
142 3 0.01
143 40 0.08
144 1 0.00
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.21
Consensus pattern (137 bp):
AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTA
AAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTT
TAAACGG
Found at i:71852 original size:28 final size:28
Alignment explanation
Indices: 71820--71941 Score: 111
Period size: 28 Copynumber: 4.1 Consensus size: 28
71810 TGAAAAGGAA
*
71820 AAAAGAGTGCCAC-AAAGTTGTGGGCTTT
1 AAAAGAGTGCCACGGAA-TTGTGGGCTTT
* * *
71848 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGAT
1 AAAAGAGTGCCACGGAATTGTGGGCTT-----T
*
71881 GAAAAAAAGTGCCACGGAATTGTGGGCTTT
1 --AAAAGAGTGCCACGGAATTGTGGGCTTT
*
71911 AAAAGGGTGCCACGGAATTGTGGGCTTT
1 AAAAGAGTGCCACGGAATTGTGGGCTTT
71939 AAA
1 AAA
71942 GAAAAAATGC
Statistics
Matches: 76, Mismatches: 10, Indels: 16
0.75 0.10 0.16
Matches are distributed among these distances:
28 50 0.66
29 1 0.01
30 1 0.01
33 1 0.01
35 23 0.30
ACGTcount: A:0.33, C:0.13, G:0.31, T:0.23
Consensus pattern (28 bp):
AAAAGAGTGCCACGGAATTGTGGGCTTT
Found at i:80320 original size:52 final size:52
Alignment explanation
Indices: 80240--80359 Score: 222
Period size: 52 Copynumber: 2.3 Consensus size: 52
80230 AAAAGTTGTT
*
80240 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
*
80292 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
80344 TGCATGTATCGATACA
1 TGCATGTATCGATACA
80360 AAGATCAGTG
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Consensus pattern (52 bp):
TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
Found at i:80372 original size:52 final size:51
Alignment explanation
Indices: 80240--80379 Score: 210
Period size: 52 Copynumber: 2.7 Consensus size: 51
80230 AAAAGTTGTT
80240 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGCC
* *
80292 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGCC
*
80344 TGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TGCATGTATCGATACATTA-AT-AGTGTATCGATACA
80380 ATGTATCGAT
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 79 0.98
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
TGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGCC
Found at i:80386 original size:13 final size:13
Alignment explanation
Indices: 80368--80392 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80358 CAAAGATCAG
80368 TGTATCGATACAA
1 TGTATCGATACAA
80381 TGTATCGATACA
1 TGTATCGATACA
80393 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:80475 original size:13 final size:13
Alignment explanation
Indices: 80457--80481 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80447 CAAAAAAATA
80457 TGTATCGATACAT
1 TGTATCGATACAT
80470 TGTATCGATACA
1 TGTATCGATACA
80482 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:80477 original size:33 final size:33
Alignment explanation
Indices: 80435--80501 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
80425 AGTAGCTTAA
80435 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
80468 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
80501 A
1 A
80502 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:83909 original size:13 final size:13
Alignment explanation
Indices: 83891--83918 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
83881 TACAAAAGAT
83891 CAATGTATCGATA
1 CAATGTATCGATA
83904 CAATGTATCGATA
1 CAATGTATCGATA
83917 CA
1 CA
83919 TTTGAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:84008 original size:13 final size:13
Alignment explanation
Indices: 83990--84014 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83980 ATAAAACTTA
83990 TGTATCGATACAT
1 TGTATCGATACAT
84003 TGTATCGATACA
1 TGTATCGATACA
84015 GTTACTGTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:84099 original size:21 final size:20
Alignment explanation
Indices: 84073--84111 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
84063 GTTGGGACCT
84073 TGTATCGATACATTCTAGAAA
1 TGTATCGATACATT-TAGAAA
84094 TGTATCGATACATTTAGA
1 TGTATCGATACATTTAGA
84112 TAAAAATGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATTTAGAAA
Found at i:84940 original size:49 final size:49
Alignment explanation
Indices: 84869--85139 Score: 288
Period size: 49 Copynumber: 5.6 Consensus size: 49
84859 CCAATACGCT
** *
84869 TGATTCAAGGCCAATGATATTGGACTTAAAGACGAAGGTGCCAATGTGC
1 TGATTCAAGGCCAGCGACATTGGACTTAAAGACGAAGGTGCCAATGTGC
* ** *
84918 TGATTCAAGACCAGCGACATTGG--TT--TTA--AAGGTGCCAATCTGC
1 TGATTCAAGGCCAGCGACATTGGACTTAAAGACGAAGGTGCCAATGTGC
* * * *
84961 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATACCAATGTGC
1 TGATTCAAGGCCAGCGACATTGGACTTAAAGACGAAGGTGCCAATGTGC
** *
85010 TGATTCAAGGCC-GACGACATTGGACTTAAAGGTGGTTAAGGTTCCAATGTGC
1 TGATTCAAGGCCAG-CGACATTGGACTTAAA-GACG--AAGGTGCCAATGTGC
* * *
85062 TGAGTCAAGGCCAGCGACATTGGTCTTAAAGAC-AAGGTGCCAATATGC
1 TGATTCAAGGCCAGCGACATTGGACTTAAAGACGAAGGTGCCAATGTGC
*
85110 TGATTCAAGGCCAGCGATATTGGACTTAAA
1 TGATTCAAGGCCAGCGACATTGGACTTAAA
85140 AGTGCCACGG
Statistics
Matches: 183, Mismatches: 28, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
43 35 0.19
45 3 0.02
47 3 0.02
48 41 0.22
49 58 0.32
50 2 0.01
51 1 0.01
52 39 0.21
53 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
TGATTCAAGGCCAGCGACATTGGACTTAAAGACGAAGGTGCCAATGTGC
Found at i:84990 original size:43 final size:43
Alignment explanation
Indices: 84903--85146 Score: 193
Period size: 43 Copynumber: 5.2 Consensus size: 43
84893 CTTAAAGACG
* **
84903 AAGGTGCCAATGTGCTGATTCAAGACCAGCGACATTGGTTTTA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
* *
84946 AAGGTGCCAATCTGCTGATTCAAGGCCAGCGATATTGGACTTAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-A
*
84990 AGATGAAGATACCAATGTGCTGATTCAAGGCC-GACGACATTGGACTTA
1 A-A-G--G-TGCCAATGTGCTGATTCAAGGCCAG-CGACATTGGACTTA
* *
85038 AAGGTGGTTAAGGTTCCAATGTGCTGAGTCAAGGCCAGCGACATTGGTCTTAAAGA
1 AA---GG-T---G--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT----A
* *
85094 CAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
*
85138 AAAGTGCCA
1 AAGGTGCCA
85147 CGGAGTTGTG
Statistics
Matches: 164, Mismatches: 17, Indels: 40
0.74 0.08 0.18
Matches are distributed among these distances:
43 45 0.27
44 3 0.02
45 1 0.01
46 1 0.01
47 3 0.02
48 36 0.22
49 35 0.21
50 1 0.01
52 32 0.20
53 2 0.01
54 2 0.01
56 1 0.01
57 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (43 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
Found at i:85008 original size:92 final size:91
Alignment explanation
Indices: 84850--85146 Score: 292
Period size: 92 Copynumber: 3.1 Consensus size: 91
84840 CTTAGGAATG
* **
84850 TTAAAGATGCCAATAC-GCTTGATTCAAGGCCAATGATATTGGACTTAAAGACGAAGGTGCCAAT
1 TTAAAGGTGCCAAT-CTGC-TGATTCAAGGCCAGCGATATTGGACTTAAAGA-GAAGGTGCCAAT
*
84914 GTGCTGATTCAAGACCAGCGACATTGGTT
63 GTGCTGATTCAAGGCCAGCGACATTGGTT
* *
84943 TTAAAGGTGCCAATCTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATACCAATGT
1 TTAAAGGTGCCAATCTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-GAAGGTGCCAATGT
85008 GCTGATTCAAGGCC-GACGACATTGGACTT
65 GCTGATTCAAGGCCAG-CGACATTGG--TT
* * * * * * *
85037 AAAGGTGGTTAAGGTTCCAATGTGCTGAGTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
1 -----T--TAAAGGTGCCAATCTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAGAAGGTGC
* * **
85102 CAATATGCTGATTCAAGGCCAGCGATATTGGAC
59 CAATGTGCTGATTCAAGGCCAGCGACATTGGTT
*
85135 TTAAAAGTGCCA
1 TTAAAGGTGCCA
85147 CGGAGTTGTG
Statistics
Matches: 169, Mismatches: 23, Indels: 26
0.78 0.11 0.12
Matches are distributed among these distances:
91 9 0.05
92 65 0.38
93 16 0.09
94 2 0.01
99 1 0.01
100 32 0.19
101 44 0.26
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (91 bp):
TTAAAGGTGCCAATCTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAGAAGGTGCCAATGTG
CTGATTCAAGGCCAGCGACATTGGTT
Found at i:85183 original size:33 final size:32
Alignment explanation
Indices: 85141--85249 Score: 140
Period size: 27 Copynumber: 3.5 Consensus size: 32
85131 GGACTTAAAA
85141 GTGCCACGGAGTTGTGTG-CTTAAAAGGAACAAG
1 GTGCCACGGAGTTGTG-GACTTAAAAGG-ACAAG
85174 GTGCCACGGAGTTGTGGACTTAAAA-G----G
1 GTGCCACGGAGTTGTGGACTTAAAAGGACAAG
*
85201 GTGCCACGGAGTTGTGGATTTAAAAGGACAAG
1 GTGCCACGGAGTTGTGGACTTAAAAGGACAAG
*
85233 GGGCCACGGAGTTGTGG
1 GTGCCACGGAGTTGTGG
85250 GCTTTTGAAG
Statistics
Matches: 68, Mismatches: 2, Indels: 13
0.82 0.02 0.16
Matches are distributed among these distances:
27 25 0.37
28 1 0.01
32 19 0.28
33 23 0.34
ACGTcount: A:0.27, C:0.15, G:0.38, T:0.21
Consensus pattern (32 bp):
GTGCCACGGAGTTGTGGACTTAAAAGGACAAG
Found at i:85208 original size:27 final size:27
Alignment explanation
Indices: 85130--85227 Score: 103
Period size: 27 Copynumber: 3.5 Consensus size: 27
85120 CCAGCGATAT
85130 TGGACTTAAAA--GTGCCACGGAGTTG
1 TGGACTTAAAAGGGTGCCACGGAGTTG
85155 TGTG-CTTAAAAGGAACAAGGTGCCACGGAGTTG
1 TG-GACTTAAAA-G-----GGTGCCACGGAGTTG
85188 TGGACTTAAAAGGGTGCCACGGAGTTG
1 TGGACTTAAAAGGGTGCCACGGAGTTG
*
85215 TGGATTTAAAAGG
1 TGGACTTAAAAGG
85228 ACAAGGGGCC
Statistics
Matches: 62, Mismatches: 1, Indels: 18
0.77 0.01 0.22
Matches are distributed among these distances:
25 9 0.15
26 1 0.02
27 27 0.44
32 2 0.03
33 23 0.37
ACGTcount: A:0.30, C:0.13, G:0.34, T:0.23
Consensus pattern (27 bp):
TGGACTTAAAAGGGTGCCACGGAGTTG
Found at i:85267 original size:60 final size:60
Alignment explanation
Indices: 85130--85249 Score: 185
Period size: 60 Copynumber: 2.0 Consensus size: 60
85120 CCAGCGATAT
*
85130 TGGACTTAAAA--GTGCCACGGAGTTGTGTGCTTAAAAGGAACAAGGTGCCACGGAGTTG
1 TGGACTTAAAAGGGTGCCACGGAGTTGTGTGCTTAAAAGGAACAAGGGGCCACGGAGTTG
*
85188 TGGACTTAAAAGGGTGCCACGGAGTTGTG-GATTTAAAAGG-ACAAGGGGCCACGGAGTTG
1 TGGACTTAAAAGGGTGCCACGGAGTTGTGTG-CTTAAAAGGAACAAGGGGCCACGGAGTTG
85247 TGG
1 TGG
85250 GCTTTTGAAG
Statistics
Matches: 57, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
58 11 0.19
59 22 0.39
60 24 0.42
ACGTcount: A:0.28, C:0.14, G:0.36, T:0.22
Consensus pattern (60 bp):
TGGACTTAAAAGGGTGCCACGGAGTTGTGTGCTTAAAAGGAACAAGGGGCCACGGAGTTG
Found at i:85303 original size:29 final size:29
Alignment explanation
Indices: 85244--85490 Score: 268
Period size: 29 Copynumber: 8.6 Consensus size: 29
85234 GGCCACGGAG
* * **
85244 TTGTGGGCTTTTG-AAGGTTGCCACTGCC
1 TTGTGGGCTTTTGAAAAGATGCCACTAAC
*
85272 TTGTGGGCTTTGGAAAAGATGCCACTAAC
1 TTGTGGGCTTTTGAAAAGATGCCACTAAC
* * *
85301 TTGTGGGCTTTGGAAAATAGTGCCACTGAC
1 TTGTGGGCTTTTGAAAAGA-TGCCACTAAC
*
85331 TTGTGGGCTTTGGAAAAGAGTGCCACTAAC
1 TTGTGGGCTTTTGAAAAGA-TGCCACTAAC
*
85361 TTGTGGGCTTTTGAAAAGACGCCACTAAC
1 TTGTGGGCTTTTGAAAAGATGCCACTAAC
* * **
85390 TTGTGGGC-TTTG-AAGGTTGCCACTGCC
1 TTGTGGGCTTTTGAAAAGATGCCACTAAC
* *
85417 TTGTGGGC-TTTGAAAAGGGTGCCACTGAC
1 TTGTGGGCTTTTGAAAA-GATGCCACTAAC
* *
85446 TTGTGGGATTTTGAAAAGATGCCATTAAC
1 TTGTGGGCTTTTGAAAAGATGCCACTAAC
*
85475 TTGTGAGCTTTTGAAA
1 TTGTGGGCTTTTGAAA
85491 GTGAGGAATG
Statistics
Matches: 189, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
27 22 0.12
28 18 0.10
29 86 0.46
30 63 0.33
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (29 bp):
TTGTGGGCTTTTGAAAAGATGCCACTAAC
Found at i:85337 original size:59 final size:59
Alignment explanation
Indices: 85244--85490 Score: 301
Period size: 59 Copynumber: 4.3 Consensus size: 59
85234 GGCCACGGAG
*
85244 TTGTGGGCTTTTG--AAG-GTTGCCACTGCCTTGTGGGCTTTGGAAAAGATGCCACTAAC
1 TTGTGGGCTTTTGAAAAGAG-TGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTAAC
* *
85301 TTGTGGGCTTTGGAAAATAGTGCCACTGACTTGTGGGCTTTGGAAAAGAGTGCCACTAAC
1 TTGTGGGCTTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGGAAAAGA-TGCCACTAAC
* * * * **
85361 TTGTGGGCTTTTGAAAAGA-CGCCACTAACTTGTGGGCTTT-G-AAGGTTGCCACTGCC
1 TTGTGGGCTTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTAAC
* * * *
85417 TTGTGGGC-TTTGAAAAGGGTGCCACTGACTTGTGGGATTTTGAAAAGATGCCATTAAC
1 TTGTGGGCTTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTAAC
*
85475 TTGTGAGCTTTTGAAA
1 TTGTGGGCTTTTGAAA
85491 GTGAGGAATG
Statistics
Matches: 161, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
55 9 0.06
56 34 0.21
57 16 0.10
58 18 0.11
59 56 0.35
60 28 0.17
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (59 bp):
TTGTGGGCTTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTAAC
Found at i:86932 original size:11 final size:10
Alignment explanation
Indices: 86916--87002 Score: 68
Period size: 11 Copynumber: 8.1 Consensus size: 10
86906 TCCGGACCCT
86916 TTTTTTATTTG
1 TTTTTT-TTTG
*
86927 TTTTTTCTTTC
1 TTTTTT-TTTG
*
86938 TTTTTTTTTT
1 TTTTTTTTTG
86948 TTGCTTTTGTTTG
1 TT--TTTT-TTTG
*
86961 TTTTGTTTTG
1 TTTTTTTTTG
86971 TTTTTGTTTT-
1 TTTTT-TTTTG
*
86981 TGTTTTTGTTG
1 T-TTTTTTTTG
86992 TTTTTTTTTG
1 TTTTTTTTTG
87002 T
1 T
87003 GGAGGACGCC
Statistics
Matches: 62, Mismatches: 8, Indels: 13
0.75 0.10 0.16
Matches are distributed among these distances:
10 26 0.42
11 27 0.44
12 4 0.06
13 5 0.08
ACGTcount: A:0.01, C:0.03, G:0.13, T:0.83
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:86944 original size:14 final size:14
Alignment explanation
Indices: 86927--87000 Score: 52
Period size: 15 Copynumber: 5.5 Consensus size: 14
86917 TTTTTATTTG
*
86927 TTTTTTCTTT-CTT
1 TTTTTTTTTTGCTT
86940 TTTTTTTTTTGCTT
1 TTTTTTTTTTGCTT
*
86954 TTGTTTGTTTTG---
1 TT-TTTTTTTTGCTT
*
86966 TTTTGTTTTTG-TT
1 TTTTTTTTTTGCTT
86979 TTTGTTTTTGTTG-TT
1 TTT-TTTTT-TTGCTT
86994 TTTTTTT
1 TTTTTTT
87001 GTGGAGGACG
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
11 7 0.14
12 2 0.04
13 12 0.24
14 13 0.26
15 16 0.32
ACGTcount: A:0.00, C:0.04, G:0.12, T:0.84
Consensus pattern (14 bp):
TTTTTTTTTTGCTT
Found at i:86955 original size:9 final size:8
Alignment explanation
Indices: 86918--86998 Score: 55
Period size: 9 Copynumber: 9.9 Consensus size: 8
86908 CGGACCCTTT
86918 TTTTATTTG
1 TTTT-TTTG
86927 TTTTTTCT-
1 TTTTTT-TG
86935 TTCTTTTT-
1 TT-TTTTTG
86943 TTTTTTTG
1 TTTTTTTG
*
86951 --CTTTTG
1 TTTTTTTG
86957 TTTGTTTTG
1 TTT-TTTTG
86966 TTTTGTTT-
1 TTTT-TTTG
86974 TTGTTTTTG
1 TT-TTTTTG
86983 TTTTTGTTG
1 TTTTT-TTG
86992 TTTTTTT
1 TTTTTTT
86999 TTGTGGAGGA
Statistics
Matches: 60, Mismatches: 2, Indels: 21
0.72 0.02 0.25
Matches are distributed among these distances:
6 5 0.08
7 5 0.08
8 18 0.30
9 32 0.53
ACGTcount: A:0.01, C:0.04, G:0.12, T:0.83
Consensus pattern (8 bp):
TTTTTTTG
Found at i:86969 original size:20 final size:20
Alignment explanation
Indices: 86941--86979 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
86931 TTCTTTCTTT
*
86941 TTTTTTTTTGCTTTTGTTTG
1 TTTTGTTTTGCTTTTGTTTG
*
86961 TTTTGTTTTGTTTTTGTTT
1 TTTTGTTTTGCTTTTGTTT
86980 TTGTTTTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.00, C:0.03, G:0.15, T:0.82
Consensus pattern (20 bp):
TTTTGTTTTGCTTTTGTTTG
Found at i:86969 original size:26 final size:26
Alignment explanation
Indices: 86915--87000 Score: 90
Period size: 26 Copynumber: 3.3 Consensus size: 26
86905 ATCCGGACCC
*
86915 TTTTTTTATTTG-TTTT-TTCTTTCTT-
1 TTTTTTT-TTTGCTTTTGTT-TTTGTTG
86940 TTTTTTTTTTGCTTTTGTTTGTT-TTG
1 TTTTTTTTTTGCTTTTGTTT-TTGTTG
* *
86966 TTTTGTTTTTGTTTTTGTTTTTGTTG
1 TTTTTTTTTTGCTTTTGTTTTTGTTG
86992 TTTTTTTTT
1 TTTTTTTTT
87001 GTGGAGGACG
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
24 4 0.08
25 16 0.30
26 33 0.62
ACGTcount: A:0.01, C:0.03, G:0.12, T:0.84
Consensus pattern (26 bp):
TTTTTTTTTTGCTTTTGTTTTTGTTG
Found at i:90425 original size:12 final size:12
Alignment explanation
Indices: 90384--90418 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
90374 CACAAAGTTC
90384 TCTTCAGAATCT
1 TCTTCAGAATCT
90396 TCTTCAGAATCT
1 TCTTCAGAATCT
90408 TCTTCAGAATC
1 TCTTCAGAATC
90419 AACTTCACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.40
Consensus pattern (12 bp):
TCTTCAGAATCT
Found at i:100935 original size:13 final size:13
Alignment explanation
Indices: 100917--100942 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
100907 AAATTTTCAG
100917 ATGTATCGATACA
1 ATGTATCGATACA
100930 ATGTATCGATACA
1 ATGTATCGATACA
100943 TTTGAGTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:101019 original size:19 final size:19
Alignment explanation
Indices: 100995--101080 Score: 67
Period size: 19 Copynumber: 4.7 Consensus size: 19
100985 AGCGATACAT
100995 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
101014 TGTATCGATAC---A-TTA
1 TGTATCGATACAAAACTTA
* *
101029 --TATCAATACAACACTTA
1 TGTATCGATACAAAACTTA
** *
101046 TGTATCGATACAGTTACTCTT
1 TGTATCGATACA-AAACT-TA
101067 TGTATCGATACAAA
1 TGTATCGATACAAA
101081 TTGTTGAAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 15
0.70 0.09 0.20
Matches are distributed among these distances:
13 8 0.15
15 3 0.06
16 2 0.04
17 3 0.06
19 20 0.38
20 3 0.06
21 13 0.25
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.35
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:101038 original size:32 final size:32
Alignment explanation
Indices: 100987--101057 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
100977 AGCTTCGTAG
* *
100987 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTATATCAATACAAAACTTATGTAT
*
101019 CGATACATTATATCAATACAACACTTATGTAT
1 CGATACATTATATCAATACAAAACTTATGTAT
101051 CGATACA
1 CGATACA
101058 GTTACTCTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.32
Consensus pattern (32 bp):
CGATACATTATATCAATACAAAACTTATGTAT
Done.