Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1127
Parameters: 2 7 7 80 10 50 1000
Length:  17560

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2519--2544
13
2.0
13
100
0
52
38
15
15
30
1.88
3495--3729
43
5.1
47
77
13
247
31
18
25
24
1.97
3503--3729
92
2.5
90
91
5
357
31
18
25
24
1.97
3754--4247
43
10.4
50
77
14
359
31
18
25
24
1.97
3842--4239
43
8.7
43
81
11
438
30
19
25
24
1.98
3375--4028
301
2.2
302
92
4
1072
33
16
25
23
1.96
3800--4247
183
2.4
184
93
2
767
30
18
25
24
1.98
3791--4247
92
5.0
92
92
2
758
31
18
25
24
1.98
4250--4385
32
4.1
32
77
15
125
16
20
34
27
1.95
4268--4367
35
2.9
35
80
12
120
16
23
35
26
1.95
4422--4653
29
8.0
29
80
7
247
25
17
28
28
1.98
4422--4648
57
3.9
57
78
11
212
25
17
29
27
1.98
4448--4659
57
3.7
57
80
8
232
24
17
28
29
1.97
4448--4653
87
2.4
85
87
6
288
24
17
27
30
1.97
6089--6181
1
93.0
1
78
0
96
0
0
10
89
0.49
6090--6183
10
9.1
10
80
15
111
0
0
11
88
0.52
6089--6183
14
6.9
14
83
7
131
0
0
11
88
0.52
6089--6178
40
2.2
40
90
9
148
0
0
11
88
0.50
9411--9450
20
2.0
20
95
4
73
35
10
15
40
1.80
9503--9528
13
2.0
13
100
0
52
30
15
15
38
1.88
10159--10380
110
2.0
114
93
5
391
30
25
7
36
1.84
13467--13506
20
2.0
20
95
4
73
35
10
15
40
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13559--13584
13
2.0
13
100
0
52
30
15
15
38
1.88

Tables:   1

The End!