Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold113
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3764034
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Warning! 4009 characters in sequence are not A, C, G, or T
File 20 of 23
Found at i:3185374 original size:112 final size:112
Alignment explanation
Indices: 3185190--3185424 Score: 276
Period size: 112 Copynumber: 2.1 Consensus size: 112
3185180 AAGACAAGTA
* * * * *
3185190 ACATTGGACTTTAAAAAGGATTTTTGACAAATATGCCAATGTGCAGATTCAAGGCTAGCGACACT
1 ACATTGGACTTTAAAAAGGATTTTTAACAAATATGCCAATGTGCAGATCCAAAGCCAGCAACACT
* * * *
3185255 GGACTTAAAGATGACATAGGTG-TCAATGTGCCAATTCAAGGCCAATG
66 AGACTTAAAGATGACAAAGGTGCT-AATGTGCCAATCCAAGGCCAAGG
* * * * *
3185302 ACATTGGATTTTTAAAAGGATTTTTAACAAATTTGCCAATTTGCTA-ATCCAAAGCCAGCAACAT
1 ACATTGGACTTTAAAAAGGATTTTTAACAAATATGCCAATGTGC-AGATCCAAAGCCAGCAACAC
* * * *
3185366 TAGTCTTAAAGATGGCAAAGGTGCTAATGTGCTAATCCAAGGCTAAGG
65 TAGACTTAAAGATGACAAAGGTGCTAATGTGCCAATCCAAGGCCAAGG
3185414 ACATTGGACTT
1 ACATTGGACTT
3185425 AAAGATAATA
Statistics
Matches: 102, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
112 100 0.98
113 2 0.02
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (112 bp):
ACATTGGACTTTAAAAAGGATTTTTAACAAATATGCCAATGTGCAGATCCAAAGCCAGCAACACT
AGACTTAAAGATGACAAAGGTGCTAATGTGCCAATCCAAGGCCAAGG
Found at i:3185426 original size:52 final size:52
Alignment explanation
Indices: 3185370--3188426 Score: 1893
Period size: 52 Copynumber: 58.8 Consensus size: 52
3185360 CAACATTAGT
** * *
3185370 CTTAAAGATGGCAAAGGTGCTAATGTGCTAATCCAAGGCTAAGGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * ** *
3185422 CTTAAAGATAATAAGGGTGCCAATGTGCTAATTCATTCATGGCT-AGTGACACCGGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGA-TC---CAAGGCTAAG-GACATTGGA
* * * ** *
3185478 CTTAGAGATGACAAAGGTGCCAATATGCTGATCCAAGGCTATTGACAATGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
** * * * *
3185530 CTTAAAGATGATAAAGGCACCATTATGTTGATCCAAGGCT-AGCGACAATGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * *
3185582 CTTAAAGATTATAAAGGTGCCAATATGCTTAT-C----C-AA-G-CATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * * *
3185626 CTTAGAGATTATAAGGGTGCCAATGTGTTGATTCAAGGC-CAGAGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
** * * * * * * * * *
3185678 CAAAAAGATGAT-AAGGATGCCAATATGCTAATTCATGGCCAACGACACTAGT
1 CTTAAAGATGATAAAGG-TGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* ** * * * * * *
3185730 CATAGTGATG-CAAAGGTGCAAATGTGTTGATCCAAAGC-CAGCGACATTAGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* *
3185781 CTTAAAGATGATAGA-GTGCTAAT-TAGCTGATCCAAGGCT-AGCGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGT-GCTGATCCAAGGCTAAG-GACATTGGA
* * * * * *
3185832 CTTAAAGATTATAAGGGTGCCAATCTACTAATCCAAGGC-CAGCGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * * * *
3185884 CTTAAAGATTATAAAGGTGCCAATATGTTGATTCAAGGCT-AGTAACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * * * *
3185936 CTT-AAGAT-A-AGAA--TGCCAATATGCTAATTCATGGCT-AGCGACATTGGC
1 CTTAAAGATGATA-AAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * * * *
3185984 CTTAGAGATAACAAAGGTGCTAATGTGCTGACCCAAGGCT-AGCGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
3186036 CTTAAAGATGATAAAGGTGCCAATGGTGTCAATATGCTAATCCAAGGCT-AGTGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAAT-GTG-C----TG---ATCCAAGGCTAAG-GACATTGGA
* * * *
3186097 CTTAAAGATTATAAAGGTGCCAATGTGCTAATCCAAGGCT-AGCACATTAGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * * **
3186148 CTTAAAAATGATAAAGGTGCCAAAGTGCTGAACCAATGCCAACAACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * ** *
3186200 CTTAAAGATCATAATGATGAAAAGGGTGCCAATGTGCGGATTCATGGCCAACAACATTGGT
1 CTTAAAG------ATGAT--AAA-GGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * *
3186261 TTTAGAGATGACAAAGGTGCCAATGTGCTGATCTAAGGCT-AGCGACATAGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * * *
3186313 CTTAAAGATTATAAAGGTGCCAATATGCTAATCCAAGGCT-AGCGACATTAGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* ** * ** *
3186365 CTTAAGGATGATAAAGGTGCCAAAATGCTGATCCAAGGCCAACAACACTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * **
3186417 CTTAAAGATGATAAAGGTG-CAA-GTGCTGATCCTAGGCCAACAACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
** * * *
3186467 CTTAAAGATGATAAAGGCACCAATATGTTGATCCAAGGCT-AGCAACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * * * * * * * *
3186519 TTTAAAGATTATAAGGGTGCCAATGTGTTGATTCATGGCT-AGCGACACTAGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * * ** * *
3186571 CTTAGAGATTACAAAGGTGCTGATGTACTAATCCAAGGCT-AGCGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * *
3186623 CTTAAAGATTATAAAGGTGCCAAAGTGCTGATCCAAGGC-AACGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * *
3186674 CTTAAAGATGATAATGGTGCGAATGTGCTGATCCAAGGCCAACGACATTGGC
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* ** * * * * * *
3186726 CTTAAAGATGGTATGGGTGCAAATGTGCTAAGT-CATGTCT-AGCGACACTGGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGA-TCCAAGGCTAAG-GACATTGGA
* ** * * * ** *
3186778 TTTGGAGATGACAAAGGTGCCAATGTGCTGATCCAAGGC-CAGCAACAAAGAA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * * * ** * * *
3186830 CTTAAAGATAATAAAGGCGCTAATATATTGATCTAAGGCTAATGACAATGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * ** *
3186882 CTTAAAGATTATAAAGGTGCCAATGTGCGGATTCAAGGC-CAGCTCATTAGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
** * * * * * * * *
3186933 CTTAAAGATGATATGGGAGCCAATGTGCTGATTCATGGCCAATGACACTAGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * *
3186985 CTTAGAGATG-CAAAGGTGCCAATGTGCTGATCCAAGGC-CAGTGACATTTGTGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACA-TTG-GA
* * * **
3187038 CTTAAAGATGATAAAGGTGCTAATGTGCTAATCCAAGGCAAACAACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * * * * * * *
3187090 CATAAAGATGGT-AAGGCTGCAAATGTGCTTATTCATGGCT-AGCAACACTAGC
1 CTTAAAGATGATAAAGG-TGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * * * * *
3187142 CTTAGAGATGACAAAAGTGCCAATGTGCTGATCCAAGGCCAACGACTTTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * * * *
3187194 CTTAATGATAATAATGGTGCCAATATGTTGATCTAAGGCTAACGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * *
3187246 CTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGC-CAGCAACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * ** * **
3187298 CTTAAAGATGATAAATGAGTG--AATGTGCTGATTCATA-GCCAACAACACTGTT
1 CTTAAAGATGATAAA-G-GTGCCAATGTGCTGATCCA-AGGCTAAGGACATTGGA
* * * * * * * * *
3187350 CTTAGAGAT-ACAAAGGTGCCAATGTTCTGATTCATGGCCAACGACACTGGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * *
3187401 CTTAGAGAT-ACAAAGGTGCTAATGTGCTGATCCAAGGCCAACGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * *
3187452 CTTAGAGATGATAAAGGTGCTAATATGCTGATCCAAGGCCAATGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * *
3187504 CTTAGAGATGATAAAAGTGCTAATGTGCTGA-CTCAAGGCCAACGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATC-CAAGGCTAAGGACATTGGA
* * * * * * * * * *
3187556 CTTAAAGATGGTAAGGGTGCAAATGCGCTAATTCATGGCT-AGCAACACTGGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * * * * * *
3187608 TTTATAGATGACAAAAGTGCTAATGTGCTGATCCAAGGCTAACGACAGTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * * * * *
3187660 CTTAAAAGATAATAAAGGTGCTATTATGTTGATCAAAGGCTTACGACATTGGA
1 CTT-AAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * *
3187713 CTTAAATATTG-TAAAGGTACCAGTGTGCTGATCCAAGGCT-AGCACATTGAA
1 CTTAAAGA-TGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * **
3187764 CTTAAAGATGATAAAGGTGCCAAAGTGCTGATCCAAAGCCAACAACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * * *
3187816 CTTAAAGATGATAATGGTGTCAATGT-TTGATCCAAGGCCAACGACATTAGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * * * * *
3187867 CTTAAAGATGGTAAAGGTGCAAATGGGCTAATGCATGGCT-AGCGACACTGGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * *
3187919 CTTAAAGATGACAAAGGCGCCAATGT-CTTGATCCAAGGC-CAGCGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGC-TGATCCAAGGCTAAG-GACATTGGA
* * * * *
3187971 CTTAAAGATTATAAAGTTGCCAATATG-TAGATCCAAGGC-CAGCGACTTTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCT-GATCCAAGGCTAAG-GACATTGGA
* * ** * * * *
3188023 TTTAAAGATGATAAAGGTGTCAAACTGCTGATTCAAGACCAA-GACACTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * * **
3188074 CTTAAAGATAATAAAAGTGCCAATGTGCTGATCCTAGGCCAACAACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * *
3188126 CTTAAAGATGATAAAAGTGCCAATATGTTGATCCAAGGCTAGTGGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTA-AGGACATTGGA
* * * * ** * *
3188179 CTTAAAGATTATAAAGGTGCCAATGAGTTGATTCTTGGC-CAGCGACATTGGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * * * * * *
3188231 CTTAGAGATGACAAAGGTGCCAATGTGCTAATCCAAGGCCAACGACACTGAA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* * * ** *
3188283 CTTAATGATTATAAAGGTACCAATGTGCCAATCCAAGGCT-AGCAACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAG-GACATTGGA
* * * **
3188335 CTTAAAAATGATAAAGGTGCCAAAGTGCTGATCCAAGGCCACTGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
* *
3188387 CTTAAAGATGATAATGGTGCTAATGTGCTGATCCAAGGCT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCT
3188427 GATGACAACC
Statistics
Matches: 2344, Mismatches: 556, Indels: 210
0.75 0.18 0.07
Matches are distributed among these distances:
44 33 0.01
45 2 0.00
47 2 0.00
48 32 0.01
49 10 0.00
50 54 0.02
51 458 0.20
52 1462 0.62
53 120 0.05
54 32 0.01
55 10 0.00
56 37 0.02
58 7 0.00
59 1 0.00
60 6 0.00
61 78 0.03
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.25
Consensus pattern (52 bp):
CTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAAGGACATTGGA
Found at i:3185616 original size:104 final size:104
Alignment explanation
Indices: 3185335--3188426 Score: 2309
Period size: 104 Copynumber: 29.7 Consensus size: 104
3185325 TTAACAAATT
* * * * * * ** * *
3185335 TGCCAATTTGCTAATCCAAAGCCAGCAACATTAGTCTTAAAGATGGCAAAGGTGCTAATGTGCTA
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * *
3185400 ATCCAAGGCTAAGGACATTGGACTTAAAGATAATAAGGG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * ** * * * *
3185439 TGCCAATGTGCTAATTCATTCATGGCTAGTGACACCGGTCTTAGAGATGACAAAGGTGCCAATAT
1 TGCCAATGTGCTGA-TC---CAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGT
** *
3185504 GCTGATCCAAGGCTATTGACAATGGACTTAAAGATGATAAAGG
62 GCTGATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
** * * * * * * * *
3185547 CACCATTATGTTGATCCAAGGCTAGCGACAATGGACTTAAAGATTATAAAGGTGCCAATATGCTT
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * *
3185612 AT-C----C-AA-G-CATTGGACTTAGAGATTATAAGGG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * ** *
3185643 TGCCAATGTGTTGATTCAAGGCCAGAGACATTGGACAAAAAGATGAT-AAGGATGCCAATATGCT
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGG-TGCCAATGTGCT
* * * * * * * * ** *
3185707 AATTCATGGCCAACGACACTAGTCATAGTGATG-CAAAGG
65 GATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * * *
3185746 TGCAAATGTGTTGATCCAAAGCCAGCGACATTAGACTTAAAGATGATAGA-GTGCTAAT-TAGCT
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGT-GCT
* * *
3185809 GATCCAAGGCTAGCGACATTGGACTTAAAGATTATAAGGG
65 GATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * * *
3185849 TGCCAATCTACTAATCCAAGGCCAGCGACATTGGACTTAAAGATTATAAAGGTGCCAATATGTTG
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* ***
3185914 ATTCAAGGCTAGTAACATTGGACTT-AAGAT-A-AGAA--
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATA-AAGG
* * * * * * * * * *
3185949 TGCCAATATGCTAATTCATGGCTAGCGACATTGGCCTTAGAGATAACAAAGGTGCTAATGTGCTG
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* *
3186014 ACCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * *
3186053 TGCCAATGGTGTCAATATGCTAATCCAAGGCTAGTGACATTGGACTTAAAGATTATAAAGGTGCC
1 TGCCAAT-GTG-C----TG---ATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCC
* * * *
3186118 AATGTGCTAATCCAAGGCTAGC-ACATTAGACTTAAAAATGATAAAGG
57 AATGTGCTGATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * *
3186165 TGCCAAAGTGCTGAACCAATGCCAACAACATTGGACTTAAAGATCATAATGATGAAAAGGGTGCC
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAG------ATGAT--AAA-GGTGCC
* * * * * ** * *
3186230 AATGTGCGGATTCATGGCCAACAACATTGGTTTTAGAGATGACAAAGG
57 AATGTGCTGATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * * *
3186278 TGCCAATGTGCTGATCTAAGGCTAGCGACATAGGACTTAAAGATTATAAAGGTGCCAATATGCTA
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * *
3186343 ATCCAAGGCTAGCGACATTAGACTTAAGGATGATAAAGG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
** * * *
3186382 TGCCAAAATGCTGATCCAAGGCCAACAACACTGGACTTAAAGATGATAAAGGTG-CAA-GTGCTG
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * *
3186445 ATCCTAGGCCAACAACATTGGACTTAAAGATGATAAAGG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
** * * * * * * * *
3186484 CACCAATATGTTGATCCAAGGCTAGCAACATTGGATTTAAAGATTATAAGGGTGCCAATGTGTTG
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * * * * * * * *
3186549 ATTCATGGCTAGCGACACTAGTCTTAGAGATTACAAAGG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
** * * * * *
3186588 TGCTGATGTACTAATCCAAGGCTAGCGACATTGGACTTAAAGATTATAAAGGTGCCAAAGTGCTG
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
*
3186653 ATCCAAGGC-AACGACATTGGACTTAAAGATGATAATGG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * ** * *
3186691 TGCGAATGTGCTGATCCAAGGCCAACGACATTGGCCTTAAAGATGGTATGGGTGCAAATGTGCTA
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * * * ** ** *
3186756 AGT-CATGTCTAGCGACACTGGTTTTGGAGATGACAAAGG
66 A-TCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* ** * * * * * **
3186795 TGCCAATGTGCTGATCCAAGGCCAGCAACAAAGAACTTAAAGATAATAAAGGCGCTAATATATTG
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * * *
3186860 ATCTAAGGCTAATGACAATGGACTTAAAGATTATAAAGG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * ** *
3186899 TGCCAATGTGCGGATTCAAGGCCAGC-TCATTAGACTTAAAGATGATATGGGAGCCAATGTGCTG
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * * * * * * * *
3186963 ATTCATGGCCAATGACACTAGTCTTAGAGATG-CAAAGG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* *
3187001 TGCCAATGTGCTGATCCAAGGCCAGTGACATTTGTGACTTAAAGATGATAAAGGTGCTAATGTGC
1 TGCCAATGTGCTGATCCAAGGCCAGCGACA-TTG-GACTTAAAGATGATAAAGGTGCCAATGTGC
* * * * *
3187066 TAATCCAAGGCAAACAACATTGGACATAAAGATGGT-AAGG
64 TGATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * * * * * * * * *
3187106 CTGCAAATGTGCTTATTCATGGCTAGCAACACTAGCCTTAGAGATGACAAAAGTGCCAATGTGCT
1 -TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * * *
3187171 GATCCAAGGCCAACGACTTTGGACTTAATGATAATAATGG
65 GATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * * * *
3187211 TGCCAATATGTTGATCTAAGGCTAACGACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTG
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * * *
3187276 ATTCAAGGCCAGCAACATTGGACTTAAAGATGATAAATGAG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAA-G-G
* * * * ** * * *
3187317 TG--AATGTGCTGATTCATA-GCCAACAACACTGTTCTTAGAGAT-ACAAAGGTGCCAATGTTCT
1 TGCCAATGTGCTGATCCA-AGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * * * * *
3187378 GATTCATGGCCAACGACACTGGTCTTAGAGAT-ACAAAGG
65 GATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * *
3187417 TGCTAATGTGCTGATCCAAGGCCAACGACATTGGACTTAGAGATGATAAAGGTGCTAATATGCTG
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * * *
3187482 ATCCAAGGCCAATGACATTGGACTTAGAGATGATAAAAG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * * *
3187521 TGCTAATGTGCTGA-CTCAAGGCCAACGACATTGGACTTAAAGATGGTAAGGGTGCAAATGCGCT
1 TGCCAATGTGCTGATC-CAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * * * * ** * * *
3187585 AATTCATGGCTAGCAACACTGGTTTTATAGATGACAAAAG
65 GATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * * * * * *
3187625 TGCTAATGTGCTGATCCAAGGCTAACGACAGTGGACTTAAAAGATAATAAAGGTGCTATTATGTT
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTT-AAAGATGATAAAGGTGCCAATGTGCT
* * *
3187690 GATCAAAGGCTTACGACATTGGACTTAAATATTG-TAAAGG
65 GATCCAAGGCTAACGACATTGGACTTAAAGA-TGATAAAGG
* * * * *
3187730 TACCAGTGTGCTGATCCAAGGCTAGC-ACATTGAACTTAAAGATGATAAAGGTGCCAAAGTGCTG
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * * *
3187794 ATCCAAAGCCAACAACATTGGACTTAAAGATGATAATGG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * * * * *
3187833 TGTCAATGT-TTGATCCAAGGCCAACGACATTAGACTTAAAGATGGTAAAGGTGCAAATGGGCTA
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * * * * *
3187897 ATGCATGGCTAGCGACACTGGTCTTAAAGATGACAAAGG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * *
3187936 CGCCAATGT-CTTGATCCAAGGCCAGCGACATTGGACTTAAAGATTATAAAGTTGCCAATATG-T
1 TGCCAATGTGC-TGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * *
3187999 AGATCCAAGGCCAGCGACTTTGGATTTAAAGATGATAAAGG
65 -GATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* ** * * * * * *
3188040 TGTCAAACTGCTGATTCAAGACCA-AGACACTGGACTTAAAGATAATAAAAGTGCCAATGTGCTG
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * * *
3188104 ATCCTAGGCCAACAACATTGGACTTAAAGATGATAAAAG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * * * *
3188143 TGCCAATATGTTGATCCAAGGCTAGTGGACATTGGACTTAAAGATTATAAAGGTGCCAATGAGTT
1 TGCCAATGTGCTGATCCAAGGCCAG-CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* ** * * * * *
3188208 GATTCTTGGCCAGCGACATTGGTCTTAGAGATGACAAAGG
65 GATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * * * * * * **
3188248 TGCCAATGTGCTAATCCAAGGCCAACGACACTGAACTTAATGATTATAAAGGTACCAATGTGCCA
1 TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * *
3188313 ATCCAAGGCTAGCAACATTGGACTTAAAAATGATAAAGG
66 ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
* * *
3188352 TGCCAAAGTGCTGATCCAAGGCCA-CTGACATTGGACTTAAAGATGATAATGGTGCTAATGTGCT
1 TGCCAATGTGCTGATCCAAGGCCAGC-GACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
3188416 GATCCAAGGCT
65 GATCCAAGGCT
3188427 GATGACAACC
Statistics
Matches: 2321, Mismatches: 592, Indels: 150
0.76 0.19 0.05
Matches are distributed among these distances:
95 4 0.00
96 70 0.03
97 2 0.00
98 1 0.00
99 1 0.00
100 77 0.03
101 10 0.00
102 198 0.09
103 547 0.24
104 908 0.39
105 217 0.09
106 31 0.01
107 6 0.00
108 78 0.03
109 4 0.00
110 2 0.00
111 6 0.00
112 51 0.02
113 108 0.05
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (104 bp):
TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
ATCCAAGGCTAACGACATTGGACTTAAAGATGATAAAGG
Found at i:3186426 original size:156 final size:156
Alignment explanation
Indices: 3185335--3188425 Score: 2267
Period size: 156 Copynumber: 19.8 Consensus size: 156
3185325 TTAACAAATT
* * * * * * * ** * * *
3185335 TGCCAATTTGCTAATCCAAAGCCAGCAACATTAGTCTTAAAGATGGCAAAGGTGCTAATGTGCTA
1 TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATATGCTG
* * * * *
3185400 ATCCAAGGCTAAG-GACATTGGACTTAAAGATAATAAGGGTGCCAATGTGCTAATTCATTCATGG
66 ATCCAAGGC-CAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA-TC---CAAGG
* ** ** * * *
3185464 CTAGTGACACCGGTCTTAGAGATGACAAAGG
126 CCAACGACATTGGACTTAAAGATGATAAAGG
* ** * ** * *
3185495 TGCCAATATGCTGATCCAAGGCTATTGACAATGGACTTAAAGATGATAAAGGCACCATTATGTTG
1 TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATATGCTG
* * * * *
3185560 ATCCAAGGCTAGCGACAATGGACTTAAAGATTATAAAGGTGCCAATATGCT--T---A-TCCAA-
66 ATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAAC
* * *
3185618 G-CATTGGACTTAGAGATTATAAGGG
131 GACATTGGACTTAAAGATGATAAAGG
* * * * **
3185643 TGCCAATGTGTTGATTCAAGGCCAGAGACATTGGACAAAAAGATGAT-AAGGATGCCAATATGCT
1 TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGG-TGCCAATATGCT
* * * * * * * * ** * * * * *
3185707 AATTCATGGCCAACGACACTAGTCATAGTGATG-CAAAGGTGCAAATGTGTTGATCCAAAGCCAG
65 GATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* *
3185771 CGACATTAGACTTAAAGATGATAGA-G
130 CGACATTGGACTTAAAGATGATAAAGG
* * * * *
3185797 TGCTAAT-TAGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATTATAAGGGTGCCAATCTACT
1 TGCCAATGT-GCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATATGCT
* * * * * * *
3185861 AATCCAAGGCCAGCGACATTGGACTTAAAGATTATAAAGGTGCCAATATGTTGATTCAAGGCTAG
65 GATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
**
3185926 TAACATTGGACTT-AAGAT-A-AGAA--
130 CGACATTGGACTTAAAGATGATA-AAGG
* * * * * * * * * *
3185949 TGCCAATATGCTAATTCATGGCTAGCGACATTGGCCTTAGAGATAACAAAGGTGCTAATGTGCTG
1 TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATATGCTG
* *
3186014 ACCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGGTGTCAATATGCTAATCC
66 ATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAAT-GTG-C----TG---ATCC
* ** *
3186079 AAGGCTAGTGACATTGGACTTAAAGATTATAAAGG
122 AAGGCCAACGACATTGGACTTAAAGATGATAAAGG
* * *
3186114 TGCCAATGTGCTAATCCAAGGCTAGC-ACATTAGACTTAAAAATGATAAAGGTGCCAA-AGTGCT
1 TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATA-TGCT
* * * * * *
3186177 GAACCAATGCCAACAACATTGGACTTAAAGATCATAATGATGAAAAGGGTGCCAATGTGCGGATT
65 GATCCAAGGCCAGCGACATTGGACTTAAAG------ATGAT--AAA-GGTGCCAATGTGCTGATC
* * ** * *
3186242 CATGGCCAACAACATTGGTTTTAGAGATGACAAAGG
121 CAAGGCCAACGACATTGGACTTAAAGATGATAAAGG
* * * *
3186278 TGCCAATGTGCTGATCTAAGGCTAGCGACATAGGACTTAAAGATTATAAAGGTGCCAATATGCTA
1 TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATATGCTG
* * * **
3186343 ATCCAAGGCTAGCGACATTAGACTTAAGGATGATAAAGGTGCCAAAATGCTGATCCAAGGCCAAC
66 ATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAAC
* *
3186408 AACACTGGACTTAAAGATGATAAAGG
131 GACATTGGACTTAAAGATGATAAAGG
* * * * ** *
3186434 TG-CAA-GTGCTGATCCTAGGCCAACAACATTGGACTTAAAGATGATAAAGGCACCAATATGTTG
1 TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATATGCTG
* * * * * * * * * *
3186497 ATCCAAGGCTAGCAACATTGGATTTAAAGATTATAAGGGTGCCAATGTGTTGATTCATGGCTAGC
66 ATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAAC
* * * * * *
3186562 GACACTAGTCTTAGAGATTACAAAGG
131 GACATTGGACTTAAAGATGATAAAGG
** * * *
3186588 TGCTGATGTACTAATCCAAGGCTAGCGACATTGGACTTAAAGATTATAAAGGTGCCAA-AGTGCT
1 TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATA-TGCT
* * *
3186652 GATCCAAGG-CAACGACATTGGACTTAAAGATGATAATGGTGCGAATGTGCTGATCCAAGGCCAA
65 GATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * **
3186716 CGACATTGGCCTTAAAGATGGTATGGG
130 CGACATTGGACTTAAAGATGATAAAGG
* * * * * ** ** * *
3186743 TGCAAATGTGCTAAGT-CATGTCTAGCGACACTGGTTTTGGAGATGACAAAGGTGCCAATGTGCT
1 TGCCAATGTGCTGA-TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATATGCT
* ** * * * * * ** * *
3186807 GATCCAAGGCCAGCAACAAAGAACTTAAAGATAATAAAGGCGCTAATATATTGATCTAAGGCTAA
65 GATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * *
3186872 TGACAATGGACTTAAAGATTATAAAGG
130 CGACATTGGACTTAAAGATGATAAAGG
* * * * * ** * *
3186899 TGCCAATGTGCGGATTCAAGGCCAGC-TCATTAGACTTAAAGATGATATGGGAGCCAATGTGCTG
1 TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATATGCTG
* * ** * * * * * **
3186963 ATTCATGGCCAATGACACTAGTCTTAGAGATG-CAAAGGTGCCAATGTGCTGATCCAAGGCCAGT
66 ATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAAC
3187027 GACATTTGTGACTTAAAGATGATAAAGG
131 GACA-TTG-GACTTAAAGATGATAAAGG
* * * * * * * * *
3187055 TGCTAATGTGCTAATCCAAGGCAAACAACATTGGACATAAAGATGGT-AAGGCTGCAAATGTGCT
1 TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGG-TGCCAATATGCT
* * * * * * * * * * *
3187119 TATTCATGGCTAGCAACACTAGCCTTAGAGATGACAAAAGTGCCAATGTGCTGATCCAAGGCCAA
65 GATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * *
3187184 CGACTTTGGACTTAATGATAATAATGG
130 CGACATTGGACTTAAAGATGATAAAGG
* * * * * * *
3187211 TGCCAATATGTTGATCTAAGGCTAACGACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTG
1 TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATATGCTG
* * *
3187276 ATTCAAGGCCAGCAACATTGGACTTAAAGATGATAAATGAGTG--AATGTGCTGATTCATA-GCC
66 ATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAA-G-GTGCCAATGTGCTGATCCA-AGGCC
* * ** * *
3187338 AACAACACTGTTCTTAGAGAT-ACAAAGG
128 AACGACATTGGACTTAAAGATGATAAAGG
* * * * * * * * * * *
3187366 TGCCAATGTTCTGATTCATGGCCAACGACACTGGTCTTAGAGAT-ACAAAGGTGCTAATGTGCTG
1 TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATATGCTG
* * * * *
3187430 ATCCAAGGCCAACGACATTGGACTTAGAGATGATAAAGGTGCTAATATGCTGATCCAAGGCCAAT
66 ATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAAC
* *
3187495 GACATTGGACTTAGAGATGATAAAAG
131 GACATTGGACTTAAAGATGATAAAGG
* * * * * * **
3187521 TGCTAATGTGCTGA-CTCAAGGCCAACGACATTGGACTTAAAGATGGTAAGGGTGCAAATGCGCT
1 TGCCAATGTGCTGATC-CAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATATGCT
* * * * * * ** * * * * *
3187585 AATTCATGGCTAGCAACACTGGTTTTATAGATGACAAAAGTGCTAATGTGCTGATCCAAGGCTAA
65 GATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* *
3187650 CGACAGTGGACTTAAAAGATAATAAAGG
130 CGACATTGGACTT-AAAGATGATAAAGG
* * * * * * * * *
3187678 TGCTATTATGTTGATCAAAGGCTTA-CGACATTGGACTTAAATATTG-TAAAGGTACCAGTGTGC
1 TGCCAATGTGCTGATCCAAGGC-TAGCGACATTGGACTTAAAGA-TGATAAAGGTGCCAATATGC
* * * *
3187741 TGATCCAAGGCTAGC-ACATTGAACTTAAAGATGATAAAGGTGCCAAAGTGCTGATCCAAAGCCA
64 TGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCA
* *
3187805 ACAACATTGGACTTAAAGATGATAATGG
129 ACGACATTGGACTTAAAGATGATAAAGG
* * * * * * * ** *
3187833 TGTCAATGT-TTGATCCAAGGCCAACGACATTAGACTTAAAGATGGTAAAGGTGCAAATGGGCTA
1 TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATATGCTG
* * * * * * * *
3187897 ATGCATGGCTAGCGACACTGGTCTTAAAGATGACAAAGGCGCCAATGT-CTTGATCCAAGGCCAG
66 ATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGC-TGATCCAAGGCCAA
* *
3187961 CGACATTGGACTTAAAGATTATAAAGT
130 CGACATTGGACTTAAAGATGATAAAGG
* * * * *
3187988 TGCCAATATG-TAGATCCAAGGCCAGCGACTTTGGATTTAAAGATGATAAAGGTGTCAA-ACTGC
1 TGCCAATGTGCT-GATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATA-TGC
* * * * * * *
3188051 TGATTCAAGACCA-AGACACTGGACTTAAAGATAATAAAAGTGCCAATGTGCTGATCCTAGGCCA
64 TGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCA
* *
3188115 ACAACATTGGACTTAAAGATGATAAAAG
129 ACGACATTGGACTTAAAGATGATAAAGG
* * * * *
3188143 TGCCAATATGTTGATCCAAGGCTAGTGGACATTGGACTTAAAGATTATAAAGGTGCCAATGA-GT
1 TGCCAATGTGCTGATCCAAGGCTAG-CGACATTGGACTTAAAGATGATAAAGGTGCCAAT-ATGC
* ** * * * *
3188207 TGATTCTTGGCCAGCGACATTGGTCTTAGAGATGACAAAGGTGCCAATGTGCTAATCCAAGGCCA
64 TGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCA
* * * *
3188272 ACGACACTGAACTTAATGATTATAAAGG
129 ACGACATTGGACTTAAAGATGATAAAGG
* ** * *
3188300 TACCAATGTGCCAATCCAAGGCTAGCAACATTGGACTTAAAAATGATAAAGGTGCCAA-AGTGCT
1 TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATA-TGCT
* *
3188364 GATCCAAGGCCA-CTGACATTGGACTTAAAGATGATAATGGTGCTAATGTGCTGATCCAAGGC
65 GATCCAAGGCCAGC-GACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGC
3188426 TGATGACAAC
Statistics
Matches: 2295, Mismatches: 553, Indels: 170
0.76 0.18 0.06
Matches are distributed among these distances:
147 18 0.01
148 85 0.04
149 2 0.00
150 2 0.00
152 98 0.04
153 14 0.01
154 360 0.16
155 484 0.21
156 642 0.28
157 216 0.09
158 42 0.02
159 7 0.00
160 89 0.04
161 23 0.01
162 5 0.00
163 3 0.00
164 106 0.05
165 76 0.03
166 1 0.00
167 1 0.00
170 5 0.00
171 1 0.00
172 6 0.00
173 9 0.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (156 bp):
TGCCAATGTGCTGATCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATATGCTG
ATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAAC
GACATTGGACTTAAAGATGATAAAGG
Found at i:3193417 original size:42 final size:42
Alignment explanation
Indices: 3193365--3193471 Score: 178
Period size: 42 Copynumber: 2.5 Consensus size: 42
3193355 TTCTCTCCTT
* **
3193365 CTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCTCTC
1 CTCCTATCATCCCTCCTCTCTCTACAATCTCTCCTGTCTCTC
*
3193407 CTCCTATCATCCCTCCTATCTCTACAATCTCTCCTGTCTCTC
1 CTCCTATCATCCCTCCTCTCTCTACAATCTCTCCTGTCTCTC
3193449 CTCCTATCATCCCTCCTCTCTCT
1 CTCCTATCATCCCTCCTCTCTCT
3193472 TCTTTCTCTT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.10, C:0.47, G:0.03, T:0.40
Consensus pattern (42 bp):
CTCCTATCATCCCTCCTCTCTCTACAATCTCTCCTGTCTCTC
Found at i:3193422 original size:24 final size:24
Alignment explanation
Indices: 3193386--3193471 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
3193376 CCTCCTCTCT
* *
3193386 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
3193410 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
*
3193431 C-A--ATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
3193452 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
3193472 TCTTTCTCTT
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
18 7 0.15
20 5 0.11
21 6 0.13
22 5 0.11
24 24 0.51
ACGTcount: A:0.12, C:0.45, G:0.02, T:0.41
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:3195435 original size:52 final size:52
Alignment explanation
Indices: 3195203--3199231 Score: 1920
Period size: 52 Copynumber: 77.5 Consensus size: 52
3195193 GGCCAGATAG
* * * * * * *
3195203 TGGACTTAAAGATAATAATGGTGCTAATATGTTGATCTAAGGCTAATGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * ** * **
3195255 TTGACTTAAA-ATTATAAAAGTGCCAATGTGCTAATTTAAGG-CTACCACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * **
3195305 TGGACTTAAAGATGATAACGGTGCCAATGTGCCGATTCATA-GCCAACAACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCA-AGGCCAATGACAT
* * * * * *
3195357 AGGTCTTAGAGATG-CAAAGGTGCCAATGTGCTGATCCAAGGCCAGTGAGAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * *
3195408 TGGACTTAAACATGACAAAGGTGCCAATGTGCTGA-CCAAGGGCCAACGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAA-GGCCAATGACAT
* * * * * * * *
3195460 TTGACATAAAGATGATAAGGGTGCAAATGTGTTGATTCATGGCCAATGACAC
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * ** *
3195512 TAGTCCTAGAGATGACAAAGGTGCCAA--TG-TGAGGC-TGG-C---GACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * *
3195556 TGGACTTAAAGATGATAAAGGTGCCATTATGTTGATCCAAGGCTAAAGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * ** * * *
3195608 TGGACTTAAAGATTATAAGGGACCCAATGTGCTGATTC-AGAGCTAGTGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAG-GCCAATGACAT
* * * ** *
3195660 TGGACTTAAAGATGATAAGGGTGCTAATGTGCTGATTCATTGCCAATGACAC
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * * * * *
3195712 TAGTCTTAGAGAT-ACAAAAGTGCCAAGGTGTTGATCTAAGGCCAACGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * *
3195763 TAGACTTAGAGATAATAAAGGTGCCAATGTGCTGATCCAAAGCCAATAACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * ** *
3195815 TGGACTTAAAGATGGT-AAGGGGCCAAATGTGCTAAT-TAATGGCTAGCGACAC
1 TGGACTTAAAGATGATAAAGGTGCC-AATGTGCTGATCCAA-GGCCAATGACAT
* * * * * *
3195867 TAGTCTTAGAGGTGACAAAGGTGCCAATGTGCTGATCCAAGG-CAACCGACAGT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA-TGACA-T
* * * ** * * ** * **
3195920 T-GACTTAAAGTTAATAAAGGGGATAATATGTTGATATAAGGCTAACAACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * *
3195971 TGGACTTAAAGATTATAAA-GTGCCAATGTGCTAATTCAAGGCC-A-GCACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATG-ACAT
** * * * * *
3196021 TATACTTAAAGATGATAAAGTTGACAAAGCGCCGATCCAAGGCCAATGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * * *** *
3196073 TGGAGTTAAAGACAGA-AAAGGTGCAAATGTGCTAAT-TAATGGCTAGCAACAC
1 TGGACTTAAAGA-TGATAAAGGTGCCAATGTGCTGATCCAA-GGCCAATGACAT
*** * * * * *
3196125 TGCTTTTAGAGGTGACAAAGGTGCCAATGTGCTGATCCAAGGCTAGTGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * *
3196177 TGGACTTAAAGATTATAAAGGTGCCAATGTACTGAT-CAAGGGCCAATGACAA
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAA-GGCCAATGACAT
* ** * * * * * * *
3196229 TGGACTTAAAGATGTTATGGGTGCAAATGTGCTAATTCATGGCTAGTGACAC
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * ** * * * * *
3196281 TGGTCCTGGAGATG-CAAAGGAGCCAATGTGGTGATCCAAGGCCAACGACAG
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * * *
3196332 TGGACTTAAAGATAATAAAGGTGCTAATATGTTGATCTAAGGCTAATAACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * *
3196384 TGGACTTAAA-ATTATAAAGGTGCCAAAGTGCTAATCCAAGGCTAA-GACCT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
** * * ** * * *
3196434 TGGACTTAAAGATGATATGGGTGCTATTGTGCTGATATAATGCCAACGACAC
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * * * **
3196486 TAGTCTTAGAGAAG-CAATGGTGCCAATGTGCTAATCCGGGTGCCAATG----
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAG-GCCAATGACAT
* * * ** *** * * * * *
3196534 TGCTAATTCAAAGCCAATGACAGTGGACTTAAAAATGATAAC-GGTGCCAATG-CGATGATCCAA
1 TG-GACTT-AAAG---ATGATAAAGG---TGCCAATG-T-GCTGAT-CCAAGGCCAATGA--CAT
* * ** * * * *
3196597 AGCCCACGACAT-TGGA-CATAAAGATGATAAGAGTGCAAATGTGCTGATTCATGGCCAACT-AC
1 TG-----GACTTAAAGATGAT-AA-------AG-GTGCCAATGTGCTGATCCAAGGCCAA-TGAC
*
3196659 AC
51 AT
* * * * * *
3196661 TGGTCTTAGAGAAGAGAAAGGTGCCAATGTGCTGATCAAAGGCCAACGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * * * * ** *
3196713 TGGACATAAAGATCATAAGGGAGCAAATGTTCTGATTCATGGCCAGCGACAC
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * *
3196765 TAGTCTTAGAGATGACAAAGGTGTCAATGTGCTGATCCAAGGCCAGTGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * *
3196817 TGGACTTAAAGATGATAAAGGCGCCAATATGTTGATCTAAGGCTAACGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * ***
3196869 TGGACTTAGAGATGATAATGG-GCCAAGGTGCTGATCCAAGGCCACCAACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * * * ** * *
3196920 TGGACTTAAAGATGGTAAGGGT-CCAAAGGTGCTAATTCATGGCTAGCGATAG
1 TGGACTTAAAGATGATAAAGGTGCC-AATGTGCTGATCCAAGGCCAATGACAT
* * * * ** ** *
3196972 TGGTCTTAGAGATGACAAAGGTGCCAATGTGCTAATTTAAGGCCAGCGACAG
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* ** * ** * * * * **
3197024 TGGACTTAAAGATAATAAAGGCACTAAAATGTTGATCTACGGCTAACAACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * ** *
3197076 TGGACTTAAAGATTATAAAGGTGCCAATATGCTGATCCAAGGCCAACAATAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * ** * *
3197128 TGGTCTTAAAGATTATAAAGGTGCCAAAGTTTTGATCCAAGGTCAACGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * ** *
3197180 TGGACTTAAAGATGATAGAGGTGCCAATGTGCTGATCCAAGGGCAACAATAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * * * *
3197232 TAGACTTAAAGATGGTAAGGGTGCAAATGTACTAATTCATGGCTGGCAACCCT-A-AT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGC---CAA---TGACAT
* * * * * *
3197288 T----TTAGAGATGACAAATGTGCCAATGTGCTGATCTAAGGCCAGA-AACAG
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCA-ATGACAT
* ** * * ** * * * *
3197336 TAGACTTGTAGATAATAAAGGTGCTAAAATGTTGATCTAAGGCTAACGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * *
3197388 TGGACATAAGGATTATAAAGGTGCCAATGTGCTAATTCAAAGCC-A-GCACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATG-ACAT
* ** * * * * * *
3197439 TGG-CTTTAAAGAAGATAATTGTACTAATGGGCTGATTCC-TGGCCAATAACAC
1 TGGAC-TTAAAGATGATAAAGGTGCCAATGTGCTGA-TCCAAGGCCAATGACAT
* * * * *
3197491 TGGTCTTAGAGATG-CAAAGGTGCCAATGTGCTAATCCAAGGCCAGTGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * *
3197542 TGGACTTTAAGATGATAAAGGTGGCAATGTGCTGATCCAAGGCCAACGACGT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
** * * * * * *
3197594 TGGA-AAAAAGATGATAAGGGTGCAAATGTGCTGATTCATGGCCAACGACCCT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGA-CAT
* * * * **
3197646 AGTA-TGT-GAGATGACAAAGGTGCCAATGTGCTGATCCAAGGCCAACAACAT
1 TGGACT-TAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * ** * * * ** *
3197697 TGGACTTAAAGATTG-TAAAGGGGCAAATGTGCAAATTCATGGCTAGCGACAC
1 TGGACTTAAAGA-TGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * ****
3197749 TGGTCTTAGAGATGACAAAGTTGCCAATGTGCTGATCCAAGGCTTGCGAC-T
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * * *
3197800 CTGGACTTAAAGATAATGAAA-GCGCTAATATGTTGATCTAAGGCTAATGACAT
1 -TGGACTTAAAGATGAT-AAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * *
3197853 TGGACTTAAAGATTATAAAGGTGCCAGTGTGTTGATCCAAGG-CTA-GCACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATG-ACAT
* *
3197904 TGGACTTAAAGATGATAAAGGTGCCAAAGTGCTGATCCAAGGCCAACGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * **
3197956 TGGACTTAAAGATGATAATGGTGCCAAAGTG-TGGATCCAAGGCCAGCGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCT-GATCCAAGGCCAATGACAT
* * * * * * * ** *
3198008 TAGACTTAAAGATGGTAAAGGTGCAAATGGGCTAATTCATA-GCTAGCGACAC
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCA-AGGCCAATGACAT
* ** * * * *
3198060 TGGTCTTAGGGATGACAAAGGTGCCAATGTG-TCGACCCATGGCCAACGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCT-GATCCAAGGCCAATGACAT
* * * * **
3198112 TAGACTTAAAGATTATAAAGGTGCCAATATGCAGATCCAAGGCCAGCGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * * * **
3198164 TTGACATAGAGATGATAAAGGTGCCAATGTGTTGACCCATGGCTAGCGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * ** * * **
3198216 TAGACTTAAAGATTATAAAGGTGGTAATATGCAGATCCAAGGCCAGCGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * *
3198268 TGGACATAAAGATGATAAAGGTGCCAAAGTGTTGATCCAAGGCTAA-GACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * **
3198319 TGGACTTAAAGATGCTAAAGGTGCCAATGTGCTGATCCTAGGCCAACAACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * **
3198371 TGGACTTAACA-ATGATAAATGCGCCAATATGTTGATCCAAGGCTAGCGACAT
1 TGGACTTAA-AGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * * * * ** *
3198423 TGGACTTAAAGATTATAAGGGAGCCAATATGTTGATTCATGGCTAGCGACAC
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * ***
3198475 TGGTCTTAGAGATGACAAAGGTGCCAATGTGCTGATCCAAGGCCAGCAACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * *
3198527 TGGACTTAAAGATTATAAAGGTGCCAATGTGCTGATCTAGGGCCAGA-GACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCA-ATGACAT
* * * *
3198579 TGGATTTAAAGATGATAAAGGTGCCAAAGTGCTGATCCAAGGCTAACGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * ** *
3198631 TGGACTTAAAGATGA-AAATGGTGCCAATGTGTTGATTCATGGCTAGCGACAC
1 TGGACTTAAAGATGATAAA-GGTGCCAATGTGCTGATCCAAGGCCAATGACAT
** * * * **
3198683 TGGTTTTAGAGATGACAAAGGTGCCAATATGCTGATCCAAGGCCAGCGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * *
3198735 TGGACTTAAAGATTATAAAGGTGCTAATATGCAGATCCAAAGCCAGTGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * *
3198787 TAGG-CGTAAAGATGATAAAGGTGCCAATGTGCTGATCTAAGGCTAACGACAA
1 T-GGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
** * * * * * ** *
3198839 TGGACTTAAAGATCG-TATGGGTGCAAATGTGTTGATTCATGGCTAGCGACAC
1 TGGACTTAAAGAT-GATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * * ** ** *
3198891 TGGTCTTAGAGATGAAAAAGGTGCTAATGTACTAATGTAAGAG-CAGCGACAG
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAG-GCCAATGACAT
* ** * * * * * ***
3198943 TGGACTTAAAGATAATAAAGGCACTAATATGTTGATCTAAGGCTAGCAACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * * *
3198995 TGGACTTAAATATTATAAAAGTGCCAAAGAGAACTTATCCAAGGCTAATGACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTG--CTGATCCAAGGCCAATGACAT
* * * *
3199049 TGGACTTAAAGATGATAATGGTGCCAATGT-ATGGATCTAAGGCCAATTACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCT-GATCCAAGGCCAATGACAT
* * * * * * * * ** **
3199101 TGGACTTAAAGATGGTAATGGTGCAAATGGGCTAATTCATGGCTAGCGACGC
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
* * * * * * * **
3199153 TAGTCTTACATATCACAAAGGTGCCAATGTCCTGATCCAAGGCCAACAACAT
1 TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
3199205 TGGACTTAAAGAAT-ATAAAGGTGCCAA
1 TGGACTTAAAG-ATGATAAAGGTGCCAA
3199232 CACGCATGAT
Statistics
Matches: 2958, Mismatches: 880, Indels: 278
0.72 0.21 0.07
Matches are distributed among these distances:
44 25 0.01
46 2 0.00
47 6 0.00
48 8 0.00
49 8 0.00
50 61 0.02
51 532 0.18
52 2164 0.73
53 48 0.02
54 44 0.01
55 3 0.00
56 3 0.00
57 10 0.00
58 3 0.00
59 6 0.00
60 4 0.00
61 2 0.00
62 2 0.00
63 1 0.00
64 3 0.00
65 5 0.00
66 6 0.00
67 10 0.00
69 1 0.00
70 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (52 bp):
TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAATGACAT
Found at i:3195505 original size:155 final size:155
Alignment explanation
Indices: 3195235--3196415 Score: 713
Period size: 155 Copynumber: 7.7 Consensus size: 155
3195225 GCTAATATGT
* * * * * * * * ** *
3195235 TGATCTAAGGCTAATGACATTTGACTTAAA-ATTATAAAAGTGCCAATGTGCTAATTTAAGG-CT
1 TGATCCAAGGCCAGTGACATTAGACTTAAAGATGACAAAGGTGCCAATGTGCTGATCCAAGGCCA
* * * * * * * *
3195298 ACCACATTGGACTTAAAGATGATAACGGTGCCAATGTGCCGATTCATAGCCAACAACATAGGTCT
66 ACGACATTGGACTTAAAGATGATAAGGGTGCAAATGTGCTGATTCATGGCTAATAACATTGGTCT
3195363 TAGAGATGCAAAGGTGCCAATGTGC
131 TAGAGATGCAAAGGTGCCAATGTGC
* * *
3195388 TGATCCAAGGCCAGTGAGATTGGACTTAAACATGACAAAGGTGCCAATGTGCTGA-CCAAGGGCC
1 TGATCCAAGGCCAGTGACATTAGACTTAAAGATGACAAAGGTGCCAATGTGCTGATCCAA-GGCC
* * * * * * *
3195452 AACGACATTTGACATAAAGATGATAAGGGTGCAAATGTGTTGATTCATGGCCAATGACACTAGTC
65 AACGACATTGGACTTAAAGATGATAAGGGTGCAAATGTGCTGATTCATGGCTAATAACATTGGTC
*
3195517 CTAGAGATGACAAAGGTGCCAA--TG-
130 TTAGAGATG-CAAAGGTGCCAATGTGC
** * * * * * * *
3195541 TG-----AGGCTGGCGACATTGGACTTAAAGATGATAAAGGTGCCATTATGTTGATCCAAGGCTA
1 TGATCCAAGGCCAGTGACATTAGACTTAAAGATGACAAAGGTGCCAATGTGCTGATCCAAGGCCA
* * ** * * * *
3195601 AAGACATTGGACTTAAAGATTATAAGGGACCCAATGTGCTGATTCA-GAGCTAGTGACATTGGAC
66 ACGACATTGGACTTAAAGATGATAAGGGTGCAAATGTGCTGATTCATG-GCTAATAACATTGGTC
* *
3195665 TTAAAGATG-ATAAGGGTGCTAATGTGC
130 TTAGAGATGCA-AA-GGTGCCAATGTGC
* ** * * * * * * * *
3195692 TGATTCATTGCCAATGACACTAGTCTTAGAGAT-ACAAAAGTGCCAAGGTGTTGATCTAAGGCCA
1 TGATCCAAGGCCAGTGACATTAGACTTAAAGATGACAAAGGTGCCAATGTGCTGATCCAAGGCCA
* * * * * * ** * *
3195756 ACGACATTAGACTTAGAGATAATAAAGGTGCCAATGTGCTGATCCAAAGCCAATAACATTGGACT
66 ACGACATTGGACTTAAAGATGATAAGGGTGCAAATGTGCTGATTCATGGCTAATAACATTGGTCT
* ** *
3195821 TAAAGATGGTAAGGGGCCAAATGTGC
131 TAGAGATGCAAAGGTGCC-AATGTGC
* * * * * * * *
3195847 TAAT-TAATGGCTAGCGACACTAGTCTTAGAGGTGACAAAGGTGCCAATGTGCTGATCCAAGG-C
1 TGATCCAA-GGCCAGTGACATTAGACTTAAAGATGACAAAGGTGCCAATGTGCTGATCCAAGGCC
* * * * * *
3195910 AACCGACAGTT-GACTTAAAGTTAATAAAGGG-G-ATAATATGTTGATAT-AAGGCTAACAACAT
65 AA-CGACA-TTGGACTTAAAGATGAT-AAGGGTGCA-AATGTGCTGAT-TCATGGCTAATAACAT
* * * *
3195971 TGGACTTAAAGAT-TATAAAGTGCCAATGTGC
125 TGGTCTTAGAGATGCA-AAGGTGCCAATGTGC
* * * * * * * * * *
3196002 TAATTCAAGGCCAG-CACATTATACTTAAAGATGATAAAGTTGACAAAGCGCCGATCCAAGGCCA
1 TGATCCAAGGCCAGTGACATTAGACTTAAAGATGACAAAGGTGCCAATGTGCTGATCCAAGGCCA
* * * * * * ** * * *
3196066 ATGACATTGGAGTTAAAGACAGA-AAAGGTGCAAATGTGCTAATTAATGGCTAGCAACACTGCTT
66 ACGACATTGGACTTAAAGA-TGATAAGGGTGCAAATGTGCTGATTCATGGCTAATAACATTGGTC
*
3196130 TTAGAGGTGACAAAGGTGCCAATGTGC
130 TTAGAGATG-CAAAGGTGCCAATGTGC
* * * * *
3196157 TGATCCAAGGCTAGTGACATTGGACTTAAAGATTATAAAGGTGCCAATGTACTGAT-CAAGGGCC
1 TGATCCAAGGCCAGTGACATTAGACTTAAAGATGACAAAGGTGCCAATGTGCTGATCCAA-GGCC
* * * * * * * *
3196221 AATGACAATGGACTTAAAGATGTTATGGGTGCAAATGTGCTAATTCATGGCTAGTGACACTGGTC
65 AACGACATTGGACTTAAAGATGATAAGGGTGCAAATGTGCTGATTCATGGCTAATAACATTGGTC
* * * *
3196286 CTGGAGATGCAAAGGAGCCAATGTGG
130 TTAGAGATGCAAAGGTGCCAATGTGC
** * * * * * * * * *
3196312 TGATCCAAGGCCAACGACAGTGGACTTAAAGATAATAAAGGTGCTAATATGTTGATCTAAGGCTA
1 TGATCCAAGGCCAGTGACATTAGACTTAAAGATGACAAAGGTGCCAATGTGCTGATCCAAGGCCA
** * *
3196377 ATAACATTGGACTTAAA-ATTATAAAGGTGCCAAA-GTGCT
66 ACGACATTGGACTTAAAGATGATAAGGGTG-CAAATGTGCT
3196416 AATCCAAGGC
Statistics
Matches: 798, Mismatches: 189, Indels: 81
0.75 0.18 0.08
Matches are distributed among these distances:
146 1 0.00
147 3 0.00
148 106 0.13
149 4 0.01
150 2 0.00
151 2 0.00
153 36 0.05
154 117 0.15
155 314 0.39
156 207 0.26
157 6 0.01
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (155 bp):
TGATCCAAGGCCAGTGACATTAGACTTAAAGATGACAAAGGTGCCAATGTGCTGATCCAAGGCCA
ACGACATTGGACTTAAAGATGATAAGGGTGCAAATGTGCTGATTCATGGCTAATAACATTGGTCT
TAGAGATGCAAAGGTGCCAATGTGC
Found at i:3195612 original size:200 final size:199
Alignment explanation
Indices: 3195372--3195824 Score: 498
Period size: 200 Copynumber: 2.2 Consensus size: 199
3195362 TTAGAGATGC
* ** * **
3195372 AAAGGTGCCAATGTGCTGATCCAAGGCCAGTGAGATTGGACTTAAACATGACAAAGGTGCCAATG
1 AAAGGTGCCAATATGCTGATCCAAGGCCAAAGACATTGGACTTAAACATGACAAAGGACCCAATG
* * *
3195437 TGCTGA-CCAAGGGCCAACGACATTTGACATAAAGATGATAAGGGTGCAAATGTGTTGATTCATG
66 TGCTGATCC-AGAGCCAACGACATTGGACATAAAGATGATAAGGGTGCAAATGTGCTGATTCATG
*
3195501 GCCAATGACACTAGTCCTAGAGATGACAAAGGTGCCAATGTGAGGCTGGCGACATTGGACTTAAA
130 GCCAATGACACTAGTCCTAGAGAT-ACAAAAGTGCCAATGTGAGGCTGGCGACATTGGACTTAAA
3195566 GATGAT
194 GATGAT
* * * * * * *
3195572 AAAGGTGCCATTATGTTGATCCAAGGCTAAAGACATTGGACTTAAAGATTATAAGGGACCCAATG
1 AAAGGTGCCAATATGCTGATCCAAGGCCAAAGACATTGGACTTAAACATGACAAAGGACCCAATG
* * ** * * *
3195637 TGCTGATTCAGAGCTAGTGACATTGGACTTAAAGATGATAAGGGTGCTAATGTGCTGATTCATTG
66 TGCTGATCCAGAGCCAACGACATTGGACATAAAGATGATAAGGGTGCAAATGTGCTGATTCATGG
* * *
3195702 CCAATGACACTAGTCTTAGAGATACAAAAGTGCCAAGGTGTTGA-TCTAAGGCCAACGACATTAG
131 CCAATGACACTAGTCCTAGAGATACAAAAGTGCCAA--TG-TGAGGCT--GG----CGACATTGG
* *
3195766 ACTTAGAGATAAT
187 ACTTAAAGATGAT
* *
3195779 AAAGGTGCCAATGTGCTGATCCAAAGCCAATA-ACATTGGACTTAAA
1 AAAGGTGCCAATATGCTGATCCAAGGCCAA-AGACATTGGACTTAAA
3195825 GATGGTAAGG
Statistics
Matches: 208, Mismatches: 34, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
199 12 0.06
200 127 0.61
201 5 0.02
202 3 0.01
203 2 0.01
207 58 0.28
208 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (199 bp):
AAAGGTGCCAATATGCTGATCCAAGGCCAAAGACATTGGACTTAAACATGACAAAGGACCCAATG
TGCTGATCCAGAGCCAACGACATTGGACATAAAGATGATAAGGGTGCAAATGTGCTGATTCATGG
CCAATGACACTAGTCCTAGAGATACAAAAGTGCCAATGTGAGGCTGGCGACATTGGACTTAAAGA
TGAT
Found at i:3195674 original size:148 final size:148
Alignment explanation
Indices: 3195406--3195690 Score: 322
Period size: 148 Copynumber: 1.9 Consensus size: 148
3195396 GGCCAGTGAG
* * *
3195406 ATTGGACTTAAACATGACAAAGGTGCCAATGTGCTGACCAAGGGCCAACGACATTTGACATAAAG
1 ATTGGACTTAAACATGACAAAGGTGCCAATATGCTGACCAAGGGCCAAAGACATTGGACATAAAG
** * * *
3195471 ATGATAAGGGTGCAAATGTGTTGATTCATGGCCAATGACACTAGTCCTAGAGATGACAAAGGTGC
66 ATGATAAGGGACCAAATGTGCTGATTCATGGCCAATGACACTAGACCTAAAGATGACAAAGGTGC
3195536 CAATGTGAGGCTGGCGAC
131 CAATGTGAGGCTGGCGAC
* * * * * *
3195554 ATTGGACTTAAAGATGATAAAGGTGCCATTATGTTGATCCAA-GGCTAAAGACATTGGACTTAAA
1 ATTGGACTTAAACATGACAAAGGTGCCAATATGCTGA-CCAAGGGCCAAAGACATTGGACATAAA
* * * * * * * * *
3195618 GATTATAAGGGACCCAATGTGCTGATTCA-GAGCTAGTGACATTGGACTTAAAGATGATAAGGGT
65 GATGATAAGGGACCAAATGTGCTGATTCATG-GCCAATGACACTAGACCTAAAGATGACAAAGGT
*
3195682 GCTAATGTG
129 GCCAATGTG
3195691 CTGATTCATT
Statistics
Matches: 111, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
147 1 0.01
148 106 0.95
149 4 0.04
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (148 bp):
ATTGGACTTAAACATGACAAAGGTGCCAATATGCTGACCAAGGGCCAAAGACATTGGACATAAAG
ATGATAAGGGACCAAATGTGCTGATTCATGGCCAATGACACTAGACCTAAAGATGACAAAGGTGC
CAATGTGAGGCTGGCGAC
Found at i:3195755 original size:355 final size:353
Alignment explanation
Indices: 3195203--3196038 Score: 903
Period size: 355 Copynumber: 2.3 Consensus size: 353
3195193 GGCCAGATAG
* * * * *
3195203 TGGACTTAAAGATAATAATGGTGCTAATATGTTGATCTAAGGCTAATGACATTTGACTTAAAATT
1 TGGACTTAAAGATAATAAAGGTGCCAATATGTTGATCCAAGGCTAAAGACATTGGACTTAAAATT
** *
3195268 ATAAAAGTGCCAATGTGCTAATTTAAGGCTACCACATTGGACTTAAAGATGATAACGGTGCCAAT
66 ATAAAAGACCCAATGTGCTAATTCAAGGCTACCACATTGGACTTAAAGATGATAACGGTGCCAAT
* * *
3195333 GTGCCGATTCATAGCCAACAACATAGGTCTTAGAGATGCAAAGGTGCCAATGTGCTGATCCAAGG
131 GTGCCGATTCATAGCCAACAACATAGGTCTTAGAGATACAAAAGTGCCAAGGTGCTGATCCAAGG
** * * * * * *
3195398 CCAGTGAGATTGGACTTAAACATGACAAAGGTGCCAATGTGCTGA-CCAAGGGCCAACGACATTT
196 CCAACGACATTAGACTTAAACATAACAAAGGTGCCAATGTGCTGATCCAA-AGCCAACAACATTG
* * * *
3195462 GACATAAAGATGATAAGGGTG-CAAATGTGTTGATTCATGGCCAATGACACTAGTCCTAGAGATG
260 GACATAAAGATGATAAGGG-GCCAAATGTGCTAATTAATGGCCAACGACACTAGTCCTAGAGATG
3195526 ACAAAGGTGCCAATGTGAGGCTGGCGACAT
324 ACAAAGGTGCCAATGTGAGGCTGGCGACAT
* *
3195556 TGGACTTAAAGATGATAAAGGTGCCATTATGTTGATCCAAGGCTAAAGACATTGGACTTAAAGAT
1 TGGACTTAAAGATAATAAAGGTGCCAATATGTTGATCCAAGGCTAAAGACATTGGACTTAAA-AT
** * ** * *
3195621 TATAAGGGACCCAATGTGCTGATTC-AGAGCTAGTGACATTGGACTTAAAGATGATAAGGGTGCT
65 TATAAAAGACCCAATGTGCTAATTCAAG-GCTA-CCACATTGGACTTAAAGATGATAACGGTGCC
* * ** * *
3195685 AATGTGCTGATTCATTGCCAATGACACTA-GTCTTAGAGATACAAAAGTGCCAAGGTGTTGATCT
128 AATGTGCCGATTCATAGCCAACAACA-TAGGTCTTAGAGATACAAAAGTGCCAAGGTGCTGATCC
* * * *
3195749 AAGGCCAACGACATTAGACTTAGAGATAATAAAGGTGCCAATGTGCTGATCCAAAGCCAATAACA
192 AAGGCCAACGACATTAGACTTAAACATAACAAAGGTGCCAATGTGCTGATCCAAAGCCAACAACA
* * * * * *
3195814 TTGGACTTAAAGATGGTAAGGGGCCAAATGTGCTAATTAATGGCTAGCGACACTAGTCTTAGAGG
257 TTGGACATAAAGATGATAAGGGGCCAAATGTGCTAATTAATGGCCAACGACACTAGTCCTAGAGA
***
3195879 TGACAAAGGTGCCAATGTGCTGATCCAAGGCAACCGACAGT
322 TGACAAAGGTGCCAA--TG-TG-----AGGCTGGCGACA-T
* * ** **
3195920 T-GACTTAAAGTTAATAAAGGGGATAATATGTTGATATAAGGCTAACA-ACATTGGACTTAAAGA
1 TGGACTTAAAGATAATAAAGGTGCCAATATGTTGATCCAAGGCTAA-AGACATTGGACTTAAA-A
** * * **
3195983 TTAT-AAAGTGCCAATGTGCTAATTCAAGGCCAGCACATTATACTTAAAGATGATAA
64 TTATAAAAGACCCAATGTGCTAATTCAAGGCTACCACATTGGACTTAAAGATGATAA
3196039 AGTTGACAAA
Statistics
Matches: 397, Mismatches: 69, Indels: 26
0.81 0.14 0.05
Matches are distributed among these distances:
353 57 0.14
354 26 0.07
355 195 0.49
356 6 0.02
357 2 0.01
358 2 0.01
361 20 0.05
362 19 0.05
363 67 0.17
364 3 0.01
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (353 bp):
TGGACTTAAAGATAATAAAGGTGCCAATATGTTGATCCAAGGCTAAAGACATTGGACTTAAAATT
ATAAAAGACCCAATGTGCTAATTCAAGGCTACCACATTGGACTTAAAGATGATAACGGTGCCAAT
GTGCCGATTCATAGCCAACAACATAGGTCTTAGAGATACAAAAGTGCCAAGGTGCTGATCCAAGG
CCAACGACATTAGACTTAAACATAACAAAGGTGCCAATGTGCTGATCCAAAGCCAACAACATTGG
ACATAAAGATGATAAGGGGCCAAATGTGCTAATTAATGGCCAACGACACTAGTCCTAGAGATGAC
AAAGGTGCCAATGTGAGGCTGGCGACAT
Found at i:3200082 original size:52 final size:52
Alignment explanation
Indices: 3199943--3200952 Score: 716
Period size: 52 Copynumber: 19.6 Consensus size: 52
3199933 CATCAACGTA
* * * * * *
3199943 GATCTAAGGCCAGCGACATTGGACATAAGGATGATAAAGGTGCCAAAGTGAT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * *
3199995 -ATTCTAAGGCCAA-GACACTGGACTTAAAGATGATAAAAGTGCCAATGTGCT
1 GA-TCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * *
3200046 GATCCTAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATATGTT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * * * * * * *
3200098 GATCAAAGGCTAGCAATATTGGACTTAAAGGTTATAAGGGTGCCAATGTGTT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * * * *
3200150 GATCTAGGGCCATCGGCATTGGACTTAAAGATGATAATGGTGCCAATATGCT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * * * * * ** *
3200202 GATCTAACGCTAACAATATTGGACTCAAAGATGGTATGGGTGCAAATGTGCT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * * * * * * * * *
3200254 AATTCATGGCTAGCAACACTGGTCTTATAGATGACAAAGGTGCCAATTTGCT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * * ** * * * * * * *
3200306 GATCCAACGTCAGCAACAGAGAACATAAAGATAATAAAGGCGCTAATATGTT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * * * * *
3200358 GATCTAAGGCTAACGACATCGGACTTCAAGATTATAAAAGTGCCAATATGCT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * * * *
3200410 GATTCAGGGCCAGC-ACATTGGCCTTAAAGATGAT-AAGTATGCTAATGTGCT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAG-GTGCCAATGTGCT
* * * * * * * * *
3200461 GATTCATGGCCAATGGCACTAGTCTTAGAGATG-CAAAGGTGCCAATGTGCT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* ** * *
3200512 GATCAAAGGCCAGTGACATTGGACTTTAAGATGATAAAGGTGCCAATATGCT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * * * * *
3200564 GATCTAACGCCAATGACATTTGACATAAAGATGATAAGGGTGTCAATGTGCT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * * * * * * *
3200616 GATTCATGGACACCGGCATTGGTCTTAAAGATG-CAAAGGAGCCAATGTGTT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * * * * *
3200667 GATCCAAGGCCAACGACAATGGACTTAGAGACGATAAAAGTGTCGATGCGCT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * *
3200719 GATCCAAGGCCAGCGAAATTGGACTTAAAGATTATAAAGGTGCCAATGTGCT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * * * *
3200771 GATCCATGGCCAGCGACCTTAGACTTAAAGATTATAAAGGTGCCAATGTGCA
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * *
3200823 GAT------CC-ACGACATTAGACTTAAGGACGATAAAGGTGCCAAAGTGCT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * *
3200868 GATCCAAGGCCAATGACTTTGGACTTAGAGACGATAAAGGTAG-CAATGTGCT
1 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGT-GCCAATGTGCT
** *
3200920 GATCCAAGGCCATTGACATTTGACTTAAAGATG
1 GATCCAAGGCCAACGACATTGGACTTAAAGATG
3200953 GTAAGGGTCC
Statistics
Matches: 733, Mismatches: 209, Indels: 32
0.75 0.21 0.03
Matches are distributed among these distances:
45 36 0.05
46 2 0.00
50 2 0.00
51 152 0.21
52 540 0.74
53 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (52 bp):
GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
Found at i:3200653 original size:155 final size:153
Alignment explanation
Indices: 3199943--3200931 Score: 497
Period size: 155 Copynumber: 6.4 Consensus size: 153
3199933 CATCAACGTA
* * * * * * *
3199943 GATCTAAGGCCAGCGACATTGGACATAAGGATGATAAAGGTGCCAAAGTGAT-ATTCTAAGGCCA
1 GATCTAAGGCCA-AGACATTGGACTTAAAGATGATAAGGGTG-CAATGTGCTGATTC-ATGGCCA
* * * * * * **
3200007 A-GACACTGGACTTAAAGATGATAAAAGTGCCAATGTGCTGATCCTAGGCCAACGACATTGGACT
63 ACGGCATTAGTCTTAAAGATG-CAAAGGTGCCAATGTGCTGATCAAAGGCCAACGACATTGGACT
* * *
3200071 TAAAGATGATAAAGGTGCCAATATGTT
127 TTAAGATGATAAAAGTGCCAATATGCT
* * * * * * *
3200098 GATCAAAGG-CTAGCAATATTGGACTTAAAGGTTATAAGGGTGCCAATGTGTTGA-TCTAGGGCC
1 GATCTAAGGCCAAG--ACATTGGACTTAAAGATGATAAGGGTG-CAATGTGCTGATTC-ATGGCC
* * * * * * * * *
3200161 ATCGGCATTGGACTTAAAGATG-ATAATGGTGCCAATATGCTGATCTAACGCTAACAATATTGGA
62 AACGGCATTAGTCTTAAAGATGCA-AA-GGTGCCAATGTGCTGATCAAAGGCCAACGACATTGGA
** * *** * *
3200225 CTCAAAGATGGTATGGGTGCAAATGTGCT
125 CTTTAAGATGATAAAAGTGCCAATATGCT
* * * * * * * * * * ** *
3200254 AAT-TCATGG-CTAGCAACACTGGTCTTATAGATGACAAAGGTGCCAATTTGCTGATCCAACGTC
1 GATCT-AAGGCCAAG--ACATTGGACTTAAAGATGATAAGGGTG-CAATGTGCTGATTCATGGCC
* ** * * * ** * * * * * * *
3200317 AGCAACA-GAGAACATAAAGATAATAAAGGCGCTAATATGTTGATCTAAGGCTAACGACATCGGA
62 AACGGCATTAG-TCTTAAAGAT-GCAAAGGTGCCAATGTGCTGATCAAAGGCCAACGACATTGGA
* *
3200381 CTTCAAGATTATAAAAGTGCCAATATGCT
125 CTTTAAGATGATAAAAGTGCCAATATGCT
* * **
3200410 GAT-TCAGGGCC-AGCACATTGGCCTTAAAGATGATAAGTATGCTAATGTGCTGATTCATGGCCA
1 GATCT-AAGGCCAAG-ACATTGGACTTAAAGATGATAAGGGTGC-AATGTGCTGATTCATGGCCA
* * * **
3200473 ATGGCACTAGTCTTAGAGATGCAAAGGTGCCAATGTGCTGATCAAAGGCCAGTGACATTGGACTT
63 ACGGCATTAGTCTTAAAGATGCAAAGGTGCCAATGTGCTGATCAAAGGCCAACGACATTGGACTT
*
3200538 TAAGATGATAAAGGTGCCAATATGCT
128 TAAGATGATAAAAGTGCCAATATGCT
* * * * *
3200564 GATCTAACGCCAATGACATTTGACATAAAGATGATAAGGGTGTCAATGTGCTGATTCATGGACAC
1 GATCTAAGGCCAA-GACATTGGACTTAAAGATGATAAGGGTG-CAATGTGCTGATTCATGGCCAA
* * * * *
3200629 CGGCATTGGTCTTAAAGATGCAAAGGAGCCAATGTGTTGATCCAAGGCCAACGACAATGGAC-TT
64 CGGCATTAGTCTTAAAGATGCAAAGGTGCCAATGTGCTGATCAAAGGCCAACGACATTGGACTTT
* * * **
3200693 AGAGACGATAAAAGTGTCGATGCGCT
129 A-AGATGATAAAAGTGCCAATATGCT
* * * * * * *
3200719 GATCCAAGGCCAGCGAAATTGGACTTAAAGATTATAAAGGTGCCAATGTGCTGATCCATGGCCAG
1 GATCTAAGGCCA-AGACATTGGACTTAAAGATGATAAGGGTG-CAATGTGCTGATTCATGGCCAA
* * * ** * *
3200784 CGACCTTAGACTTAAAGATTATAAAGGTGCCAATGTGCAGAT------CC-ACGACATTAGAC-T
64 CGGCATTAGTCTTAAAGA-TGCAAAGGTGCCAATGTGCTGATCAAAGGCCAACGACATTGGACTT
* *
3200841 TAAGGACGATAAAGGTGCCAA-AGTGCT
128 TAA-GATGATAAAAGTGCCAATA-TGCT
* * * * * * *
3200868 GATCCAAGGCCAATGACTTTGGACTTAGAGACGATAAAGGTAGCAATGTGCTGATCCAAGGCCA
1 GATCTAAGGCCAA-GACATTGGACTTAAAGATGATAAGGGT-GCAATGTGCTGATTCATGGCCA
3200932 TTGACATTTG
Statistics
Matches: 642, Mismatches: 167, Indels: 56
0.74 0.19 0.06
Matches are distributed among these distances:
148 1 0.00
149 84 0.13
150 3 0.00
153 1 0.00
154 70 0.11
155 272 0.42
156 206 0.32
157 4 0.01
158 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.24
Consensus pattern (153 bp):
GATCTAAGGCCAAGACATTGGACTTAAAGATGATAAGGGTGCAATGTGCTGATTCATGGCCAACG
GCATTAGTCTTAAAGATGCAAAGGTGCCAATGTGCTGATCAAAGGCCAACGACATTGGACTTTAA
GATGATAAAAGTGCCAATATGCT
Found at i:3200840 original size:45 final size:45
Alignment explanation
Indices: 3200784--3200873 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 45
3200774 CCATGGCCAG
* ** *
3200784 CGACCTTAGACTTAAAGATTATAAAGGTGCCAATGTGCAGATCCA
1 CGACATTAGACTTAAAGACGATAAAGGTGCCAAAGTGCAGATCCA
* *
3200829 CGACATTAGACTTAAGGACGATAAAGGTGCCAAAGTGCTGATCCA
1 CGACATTAGACTTAAAGACGATAAAGGTGCCAAAGTGCAGATCCA
3200874 AGGCCAATGA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (45 bp):
CGACATTAGACTTAAAGACGATAAAGGTGCCAAAGTGCAGATCCA
Found at i:3202611 original size:12 final size:11
Alignment explanation
Indices: 3202589--3202664 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3202579 AGAGAAAGAA
*
3202589 GAGAGAGGAGG
1 GAGATAGGAGG
3202600 GATGATAGGAGG
1 GA-GATAGGAGG
*
3202612 AGAGACAGGA--
1 -GAGATAGGAGG
*
3202622 GAGATAGTA--
1 GAGATAGGAGG
3202631 GAGATAGGAGG
1 GAGATAGGAGG
3202642 GATGATAGGAGG
1 GA-GATAGGAGG
*
3202654 AGAGACAGGAG
1 -GAGATAGGAG
3202665 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:3202621 original size:24 final size:24
Alignment explanation
Indices: 3202588--3202673 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3202578 AAGAGAAAGA
*
3202588 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
3202612 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
3202630 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
3202654 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
3202674 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:3202640 original size:42 final size:42
Alignment explanation
Indices: 3202579--3202697 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3202569 CAGCCCTCAA
* *
3202579 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
3202621 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
3202663 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
3202698 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:3209570 original size:9 final size:9
Alignment explanation
Indices: 3209558--3209618 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
3209548 CTCTCTCTAT
3209558 TATCTCTCC
1 TATCTCTCC
3209567 TATCTCTCC
1 TATCTCTCC
* *
3209576 T-CCTAT-C
1 TATCTCTCC
*
3209583 -ATCCCTCC
1 TATCTCTCC
*
3209591 TATCTCTAC
1 TATCTCTCC
3209600 TATCTCTCC
1 TATCTCTCC
*
3209609 TGTCTCTCC
1 TATCTCTCC
3209618 T
1 T
3209619 CCTATCATCC
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.11, C:0.44, G:0.02, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:3209578 original size:12 final size:12
Alignment explanation
Indices: 3209563--3209597 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
3209553 TCTATTATCT
3209563 CTCCTATCTCTC
1 CTCCTATCTCTC
3209575 CTCCTATCATC-C
1 CTCCTATC-TCTC
3209587 CTCCTATCTCT
1 CTCCTATCTCT
3209598 ACTATCTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.11, C:0.49, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:3209585 original size:42 final size:42
Alignment explanation
Indices: 3209530--3209648 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
3209520 TTCTTCTCTC
* *
3209530 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
3209572 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
3209614 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3209649 TTGCGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:3209590 original size:24 final size:24
Alignment explanation
Indices: 3209554--3209639 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3209544 CCTCCTCTCT
* *
3209554 CTATTATCTCTCCTATCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
*
3209578 CTATCATCCCTCCTA--TCT-CTA
1 CTATCATCCCTCCTATCTCTCCTC
*
3209599 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
*
3209620 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTATCTCT
3209640 TCTTTCTCTT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
18 5 0.10
20 4 0.08
21 14 0.28
22 4 0.08
24 23 0.46
ACGTcount: A:0.12, C:0.45, G:0.01, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTATCTCTCCTC
Found at i:3215296 original size:52 final size:52
Alignment explanation
Indices: 3215179--3218602 Score: 1781
Period size: 52 Copynumber: 65.9 Consensus size: 52
3215169 TGTCATCAAG
* ** *
3215179 CGACATTGGACTTAAAGATGATAAAGGCGCCAA--T-C--ATCTGAGGCAAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* ** * *
3215226 CGACATTGGACTTAAAGATTATAAAGGTGCCAATGTGCTGATTTAAGGCTAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * ** *
3215278 CGAC-TGTGGACTTAAAGATGACAAGGGTGCCGATATGCTGATTGAGGGCCAA
1 CGACAT-TGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * * * *
3215330 CAACACTAGCCTT----A--ATAAGGGTGCCGATGTGCTGATTCATGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
** * * *
3215376 CGACACCGGTCTTAAAGATG-CAAAGGTGCCAGTGTGCTGATCCAAGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * *
3215427 CGACATTGGACTTAAAGATGATAAATGTGCTAATTTGCTGATCCCAAGGCAAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGAT-CCAAGGCCAA
* * *
3215480 CTAGATTGGACTTAAAGATGAT-AAGTGTGCCAATGTGCTGATCCAAGGCAAA
1 CGACATTGGACTTAAAGATGATAAAG-GTGCCAATGTGCTGATCCAAGGCCAA
*** ** * ** * * * *
3215532 CGATGCTCCACTTAAGGATGGCAAAGGTGCTAATTTGCTGATCCAGGGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* ** * * *
3215584 CGACATTGGACTTAAAGATGATAAAAGCACCAATATGTTGATCCAAGGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * * *
3215636 CGACGTTTGACTTAAAGATTACAAAGGAGCCAATGTACTGATCCAAGGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* *
3215688 CGACATTGGACTTAAAGATTATAAAGGTGCCAATGTGTTGATCCAAGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * ** *
3215740 CGTCATTAGACTTAAAGATGATAAAGGTACCAATGTATTGATCCATGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * ** * **** * * *
3215792 TGACATTTGAATTAAAGAAGATAAAGGCACCACTCCAATGATCTAAGGCTAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * *** * * *
3215844 CGACATTTGACTTAAAGTTTATTTGGGTGGCAATGTACTGATCCAAGGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * ** * *
3215896 CAACGTTAGACTTAAAGATTA-AAAGGGTTCCAATGTGCTGATTTAAGGCTAG
1 CGACATTGGACTTAAAGATGATAAA-GGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * * *
3215948 CAAAATTGGACTTAAGGATGATAAGGGTGCCAATTTGCTGATTCATGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* ** * * *
3216000 CGACACTGGTTTTAGAGATGCT-AAGGTGCCAATGTGCTGATCCAAGGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * ** *
3216051 CAACATTTGACTTAATGATTTTAAGGGTGCCAATGTGCTGATCCAAGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * *
3216103 TGACATTGGAATTAAAGATGATAAAGGTGCCAATGGGTTGCTCCAAGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * * * * ** * *
3216155 CGACATTGGACTTTAAGGTGGTGAGGGTGCAAAT-TAGCTAATTCATTGCTAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGT-GCTGATCCAAGGCCAA
* * * * *
3216207 CGACACTAGTCTTAAAGATGAAAAAGGTGCCAATGTGTTGATCCAAGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * * * * * **
3216259 TGACAGTAGGA-TTAAAAATAATAAAGGCGCTAATATGTTGATCTAAGGTTAA
1 CGACA-TTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * * **
3216311 CAACATTGGACTTAAAGATTG-CAAAGATGCCAATTTGCTAATTCAAGGCCGG
1 CGACATTGGACTTAAAGA-TGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * ** * * *
3216363 C-ACATTGGACATAAAGATGATAAGGGCACCAATATGCTGATTCATGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * ** * *
3216414 CGGCACTAGTCTTAGAGA-GGCAAAGGTGCCAATGTGCTGATCCAAGGCTAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * *
3216465 GGACATTGGAGTTCAAGATGATAAAGGTGCCAATATGCTGATCAAAGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * * * *
3216517 CGACATTGGACATAAAGATGGTAAGGGTGCAAATTTGCTGATTCATGGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * * * * *
3216569 CGGCACTAGTCTTAGAGATGA-AGAAGGTGACAATGTGTTGATCCAAGGCTAG
1 CGACATTGGACTTAAAGATGATA-AAGGTGCCAATGTGCTGATCCAAGGCCAA
* * ** * * *
3216621 CGACAATGGACTTAAAGATGATAATGGCACCAATATGCTGATCTAAGGCTAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* ** * * * *
3216673 CGACAATGGACTTAGGGATTATAAGGGTGCCAAGGTGCTAATCCAAGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * ** * * * * **
3216725 CGACATTGGACATAAAGATGGTAGGGGTGCAAATCTACTGATTCATTG-C--
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* ** * * *
3216774 C-AC--TGGTCTTAGGGATGACAAAGGTGCCAATGTGCTGATCGAAGGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * *
3216823 CGACATTAGACTTAAAGATGATAAAGGTTCCAATAG-GTTCATCTAAGGCTAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAAT-GTGCTGATCCAAGGCCAA
* * * * * *
3216875 CAACATTGGACTTAAAGATTAT-AAGCTTGCCAAAGTGCTGATTCAAGGCCAG
1 CGACATTGGACTTAAAGATGATAAAG-GTGCCAATGTGCTGATCCAAGGCCAA
* * * *
3216927 CAACATTGGACTTAAAGATGATAAGGGTGCCAATGTGCTGATTCATGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* *
3216979 CGACACTGGTCTTAAAGATGCA-AAAGGTGCCAATGTGCTGATCCAAGGCC-A
1 CGACATTGGACTTAAAGATG-ATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * *
3217030 CGGACATTGGACTTAAAGATGATAAATGTGCTAATCTGCTGATCCAAGGCAAA
1 C-GACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * **
3217083 TGACATTGGACATAAAAATGATAAGGGTGCCAATGTGCTGATATAAGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * *
3217135 CAACTTTCGACTTAAAGATGACAAAGGTGCCAATGTACTGATCCTAGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* ** * * * *
3217187 CAACATTGGACTTAAAGATGATAAAGGCACCAATATGTTGATCCAATGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * *
3217239 CGACGTTGGACTTAAAGATTATAAAGGTGCCAATGTACTGATCCAAGGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * ** * *
3217291 CGACATTGGACTTAAAGATTATAGAGGCACCAATGTGTTGATCCAATGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* *
3217343 CAACATTGGACTTAGAGATGATAAAGGTGCCAATG-GCCAACAACATTGATCCAAGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTG-------C--TGATCCAAGGCCAA
* * * * * * * * * *
3217403 TGGCATTTGACTTAAAGATTAGAAGGGTGCAAATGTGCTGATTCATGGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * * * * * *
3217455 GGACACTAGTCTTAGAGAGATGATGAAGGTGACAATGTGTTGATCTAAGGCTAG
1 CGACATTGGACTTA-A-AGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* ** ** * * *
3217509 CAACATTACACTTAAAGATGATAAAGGAACCAATATGTTGATCTAAGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
** * ** * * * * *
3217561 TTAAATTGGACTTAGGGATTATAAGGGTGGCAATGTGCTGATTCAAGGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * *
3217613 CGGCATTGGACTTAAAGATGATAAAGGTGCCAATGCG-TGGATCAAAGGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT-GATCCAAGGCCAA
* * * * * * *
3217665 CGACATTAGCCTTAAAGATTATAAGGGTGCCAATCTGCTGATTCAAGGCCAT
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * *
3217717 CAACA-T---CTT--A-A-GATAAGGGTGTCAATGTGCTGAT--TA-G----
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * ** * * * ** * *
3217754 CGACACTGGTCTTGGAGATGACAAAGGTACCAATGTGCTAATCTGAGGCTAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * *
3217806 TGACATTGGACTTAAAAATGATAAAGGTGCTAATGGTGCCAAAGTACTGATCCAAGGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAAT-GT------G--CTGATCCAAGGCCAA
* * * **
3217867 TGACATTGGACTTAAAGATTATAATGGTGCCACAT-TGGACTTAAAGATTATAAAGGTGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCA-ATGT-G-C-T---GA-T-CCAA-G-GCCAA
* ** * * *
3217929 TG-TGTT-GATCTAAGGCCAACGACGTTGGACTTAAAGATGATGAAGGTGTCAATGTGTTGATCC
1 CGACATTGGA-CTTA----AA-GA---T-GA--T--A-------AAGGTGCCAATGTGCTGATCC
**
3217992 TTGGCCAA
45 AAGGCCAA
* ** * ** *
3218000 CGAAAAAGGACTTAAAGATGATAAAGGTGCCAAGGTGCTGATCCTTGGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * * * ** *
3218052 CAACATTGGACTTAAACATGATAAAGGCGCCAATATGTTAATCAAAGGTTAT
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * ***
3218104 CGACAATGGACTTAAAGATTAT-AAGG-G----TGT--TGATTCATGGCTTG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * * *
3218148 CGACACTGGTCATAAAGATGACAAAGGTGCCAATGTACGGATCCAAGGCC-C
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
*
3218199 CGCAACATTGGACTTAAAGAT--T--A--T---AATGTGCTGATCCAAGGCCAG
1 CG--ACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * ** * * * *
3218244 CGACATTGGACTTAAAGATAATAAAAGCACCAATATGTTGATCCAAGGACAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
** * *
3218296 CGACGCTGGACTTAAAGATCATAAAGGTGCCAATGTCCTGATCCAAGGCCAGA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCA-A
* * * * * *
3218349 -GACATTGGACTTAAAGATTATAAAGGTGCTAATATGTTGATCCAAGGCTAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * *
3218400 C-ATCATTGGACTTAACGATGATAAAGGTGTCAATGTGCTGATCAAAGTCCAA
1 CGA-CATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * *
3218452 CGACATTGGACATAGAGATAATAAAGGTGCCAACGTGTTGATCCAAGGCCAA
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * * * * * *
3218504 TGGCATTTGACTTAAAGATTAGAAGGGTGCAAATGTGCTGATTCATGGCCAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * *
3218556 CGACAATAGTCTTAGAGATGACAAAGGTGACAATGTGCTGATCCAAG
1 CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAG
3218603 TCCAGAGACA
Statistics
Matches: 2513, Mismatches: 725, Indels: 273
0.72 0.21 0.08
Matches are distributed among these distances:
37 4 0.00
38 1 0.00
41 4 0.00
42 1 0.00
43 18 0.01
44 62 0.02
45 26 0.01
46 68 0.03
47 35 0.01
48 7 0.00
49 4 0.00
50 10 0.00
51 173 0.07
52 1837 0.73
53 77 0.03
54 38 0.02
55 2 0.00
58 2 0.00
59 3 0.00
60 44 0.02
61 47 0.02
62 8 0.00
63 2 0.00
64 1 0.00
65 2 0.00
66 2 0.00
67 2 0.00
68 2 0.00
69 1 0.00
70 1 0.00
71 6 0.00
72 5 0.00
73 2 0.00
74 2 0.00
75 2 0.00
78 1 0.00
80 3 0.00
81 8 0.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.24
Consensus pattern (52 bp):
CGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCCAA
Found at i:3217911 original size:29 final size:29
Alignment explanation
Indices: 3217869--3217927 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
3217859 AAGGCCAGTG
*
3217869 ACATTGGACTTAAAGATTATAATGGTGCC
1 ACATTGGACTTAAAGATTATAAAGGTGCC
3217898 ACATTGGACTTAAAGATTATAAAGGTGCC
1 ACATTGGACTTAAAGATTATAAAGGTGCC
3217927 A
1 A
3217928 ATGTGTTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (29 bp):
ACATTGGACTTAAAGATTATAAAGGTGCC
Found at i:3218614 original size:25 final size:25
Alignment explanation
Indices: 3218584--3218632 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
3218574 TGACAAAGGT
** *
3218584 GACAATGTGCTGATCCAAGTCCAGA
1 GACAATGTGCAAATCCAAGGCCAGA
3218609 GACAATGTGCAAATCCAAGGCCAG
1 GACAATGTGCAAATCCAAGGCCAG
3218633 CACATTGGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.16
Consensus pattern (25 bp):
GACAATGTGCAAATCCAAGGCCAGA
Found at i:3218933 original size:52 final size:52
Alignment explanation
Indices: 3218868--3219017 Score: 156
Period size: 52 Copynumber: 2.9 Consensus size: 52
3218858 GAAGAAGGTG
* *
3218868 ACAATGTGTTGATCCAAGGCCAACGACAATAGACTTAAAGATGATAAAAGAA
1 ACAATGTGCTGATCCAAGGCCAACGACAATGGACTTAAAGATGATAAAAGAA
* * * ** * ** **
3218920 ACAATATGCTGATCTAAGGCTAACGACAATGGACTTAGGGATTATAAGGGTG
1 ACAATGTGCTGATCCAAGGCCAACGACAATGGACTTAAAGATGATAAAAGAA
* * * *
3218972 CCAATGTGCTAATCCAAGGCCAACGACATTGGACATAAAGATGATA
1 ACAATGTGCTGATCCAAGGCCAACGACAATGGACTTAAAGATGATA
3219018 GGAGTGTTGT
Statistics
Matches: 76, Mismatches: 22, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.21
Consensus pattern (52 bp):
ACAATGTGCTGATCCAAGGCCAACGACAATGGACTTAAAGATGATAAAAGAA
Found at i:3219545 original size:20 final size:21
Alignment explanation
Indices: 3219522--3219576 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
3219512 AAGTACCCAG
*
3219522 ATGTATCGATACATT-TTTCA
1 ATGTATCGATACATTGTATCA
*
3219542 ATGTATCGATAC-TTGTATGA
1 ATGTATCGATACATTGTATCA
*
3219562 ATGTATCAATACATT
1 ATGTATCGATACATT
3219577 CTGTCTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATTGTATCA
Found at i:3220515 original size:20 final size:21
Alignment explanation
Indices: 3220483--3220521 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
3220473 AGCCTTTGAC
*
3220483 CATGCATTTTTTATTATGTTT
1 CATGCATTTTTTAATATGTTT
3220504 CATGCA-TTTTTAATATGT
1 CATGCATTTTTTAATATGT
3220522 CCAGCATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.56
Consensus pattern (21 bp):
CATGCATTTTTTAATATGTTT
Found at i:3223391 original size:104 final size:104
Alignment explanation
Indices: 3222937--3225092 Score: 1400
Period size: 104 Copynumber: 20.9 Consensus size: 104
3222927 TAATAAAGGA
* ** * * * *
3222937 GCCAATGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGATAATGGTGTCGATGTGCTAA
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* ** * *
3223002 TTCTTGGCCAACGACACTGGTCTTAAAGATGCA-AA-GGT
66 TCCAAGGCCAACGACATTGGACTTAAAGATG-ATAAGGGT
* * * * * *
3223040 GTCGATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGACGATAAATGTGCTAATTTGCTGA
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * *
3223105 TCCAAGGCAAACTAC-TTAGACTTAAAGATGATAAGGGT
66 TCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* * * * * *
3223143 GCCAATGTGCT-ATTTCAAGGCCAGCAACACTGGACTTCATGATGATAAAGGTGCCAATGTGCTG
1 GCCAATGTGCTGA-TCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * * * * *
3223207 ATTCATGGCCAACGACACTGGTCTTAGAGATGCTAA-GGT
65 ATCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* * *
3223246 GCTAATGTGCTGATCCAAAGCCAACAACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * **
3223311 TACAAGGCCAGCGACATTGGACTTAATGATTTTAAGGGT
66 TCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* *
3223350 GCCAATGTGCTGATCCAATGCCAACGACATTGGACATAAAGATGATAAAGGTGCCAATAG-GCTG
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAAT-GTGCTG
* * * * * *
3223414 CTCTAAGGCCAACGACATTGGACTTTAAGGTGGTGAGGGT
65 ATCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* * * ** * * * * * * ** *
3223454 GCAAAT-TAGCTAATTCATTGCTAGCGACACTAGTCTTAGAGATGGCAAAGGTGCCAATGTGATG
1 GCCAATGT-GCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * * * * * * *
3223518 AGCCACGGCCAACGACAGTGGAATTAAATATAAAAAAGGT
65 ATCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* * * * * * * * * *
3223558 GCTAATATGTTGATCTAAGGCTAACGACGTTGGACTTAAAGATTG-CAAGGGCGCCAATGTGCTA
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGA-TGATAAAGGTGCCAATGTGCTG
* *** * *
3223622 ATTCAAGGCTGGC-ACATTGGACATAAAGATGATAAGGGC
65 ATCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* * * * *** * * * ** *
3223661 ACCAATATGCTGAT-TAATGGCTAACGATGCTAGTCTTAGAGA-GGCAAAGGTGCCAATGTGCAG
1 GCCAATGTGCTGATCCAA-GGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * * * * * *
3223724 ATCCAAGGCTAAAGACATTAGAGTTCAACATGATAATGGT
65 ATCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* * * * * *
3223764 GCCAATATGCTGATCAAAGGCCAACGACATTGGACATAAAGATGATAAGGGTGCAAATTTGCT-A
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * * * * * * *
3223828 ACTC-ATGCCTAGCAACACTAGTCTTAGAGATGA-AGAAGGT
66 TC-CAAGGCC-AACGACATTGGACTTAAAGATGATA-AGGGT
* * * * * * ** *
3223868 G--ACTGTGTTGATCAAAGGCTAGCGACAATGGACTTAAAGATGATAAAGGCACCAATATGCTGA
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * ** *
3223931 TCTAAGGCTAACGACAATGGACTTAGTGATTATAAGGGT
66 TCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* * * * * * * * *
3223970 GCCAATGTGCTAATCCAAGGCCAATGACTTTGGGCATAAAAGATGAT-AGGAGTACAAATCTGCT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGAC-TTAAAGATGATAAAG-GTGCCAATGTGCT
* ** * * * * *
3224034 GATTCATTG-C--C-AC-TT-GTCTTAGAGAAGACAAAGGT
64 GATCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* * * * *
3224069 GCTAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAATGGTGCCAATAG-GTTC
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAAT-GTGCTG
* * * ** * *
3224133 ATCTAGGGCTAAAAACATTGCACTTAAAGATTATAAGGGT
65 ATCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* * * ** * * *
3224173 GCCAATGTGTTGATTCAAGGCTAGTGACATTGGACTTAAAAATGATAAGGGTGCCGATGTGCTGA
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * * * * *
3224238 TTCATGGCCAATGACATTGGTCTTAAAGATG-CAATGAT
66 TCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
** * * * *
3224276 GCCGGTGTGCTGATCCAAGGCCAACGACATTGGACTTAAGGATGATAAATGTGCCAATTTGCTGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * *
3224341 TCCAAGGCAAACTACATTGGACTTAAAGATGTTAAGGGT
66 TCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* * * * ** * * * *
3224380 GCCAATGTGCTGATCCAAGGCAAACAACGTTTGAACTTATGGATGACAAAAGTGCGAATGTGCTA
1 GCCAATGTGCTGATCCAAGGCCAACGAC-ATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * **
3224445 ATCCAGGGCCAGCGACATTGGACTTAAAGATGATAA-AAT
65 ATCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* * ** * ** * * * * *
3224484 CACCAATATATTGATCCAAGGCTAGTGACGTTGGACTTCAAGATTACAAAGGTGCCAATGTACTG
1 -GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
** *
3224549 ATCCAAGGCCTGCGACATTGGACTTAAAGACT-ATAAAGGT
65 ATCCAAGGCCAACGACATTGGACTTAAAGA-TGATAAGGGT
* * * * * *
3224589 GCCAATGTGTTGACCCAAGGCCAACGTCATTGGACTTAAAGATGATAAAGGTACCAGTGTGTTGA
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * * * * * *
3224654 TCCAAGGCCAATGACATTAGAATAAAAGCTGACAAAGGC
66 TCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
** ** ** * * * * ** * *
3224693 GCCGCTCCGAC-GATATAAGGCTAGCAACATTGGACTTAAAGATTATAGGGGTGGCAATGTACTG
1 GCCAATGTG-CTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG
* * * * *
3224757 ATCCAAGGCTAGCGACGTTAGACTTAAAGATAATAAGGGT
65 ATCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* ** * * * * *
3224797 TCCAATGCACTGATTCAAGGCCAACAACATTGAACTTAAAGAGGATAAAGGTCCCAATGTGCTGA
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * * * * * *
3224862 TTCATGGCAAACGAGACTGGTCTTAGAGATGCTAA-GGT
66 TCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* * * * *
3224900 GCCAATATGCTGATCCAAGGTCAGCAACGTTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * ** * * ** *
3224965 TACAAGGCTAGTGACACTGGACTTAATGATTTTAAGGAT
66 TCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
* * *
3225004 GCCAATGTGCTGATCCAAGGCCAACGACATTAGACTTAAAGATGATAAAGGTGCCAATGGGCTGC
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
3225069 TCCAAGGCCAACGACATTGGACTT
66 TCCAAGGCCAACGACATTGGACTT
3225093 TAAGGTGGTG
Statistics
Matches: 1541, Mismatches: 468, Indels: 87
0.74 0.22 0.04
Matches are distributed among these distances:
98 22 0.01
99 45 0.03
100 1 0.00
101 4 0.00
102 114 0.07
103 488 0.32
104 758 0.49
105 109 0.07
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (104 bp):
GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
TCCAAGGCCAACGACATTGGACTTAAAGATGATAAGGGT
Found at i:3224305 original size:51 final size:51
Alignment explanation
Indices: 3222937--3225092 Score: 880
Period size: 52 Copynumber: 41.7 Consensus size: 51
3222927 TAATAAAGGA
* **
3222937 GCCAATGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATG-ATAATGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGTA-AAT-GT
* * * * ** * * * *
3222989 GTCGATGTGCTAATTCTTGGCCAACGACACTGGTCTTAAAGATGCAAAGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGTAAATGT
* * *
3223040 GTCGATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGACGATAAATGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * * * **
3223092 GCTAATTTGCTGATCCAAGGCAAACTAC-TTAGACTTAAAGATGATAAGGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * * * * *
3223143 GCCAATGTGCT-ATTTCAAGGCCAGCAACACTGGACTTCATGATGATAAAGGT
1 GCCAATGTGCTGA-TCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * * * *
3223195 GCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCT-AAGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * *
3223246 GCTAATGTGCTGATCCAAAGCCAACAACATTGGACTTAAAGATGATAAAGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * * **
3223298 GCCAATGTGCTGATACAAGGCCAGCGACATTGGACTTAATGATTTTAAGGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGA-TGTAAATGT
* * *
3223350 GCCAATGTGCTGATCCAATGCCAACGACATTGGACATAAAGATGATAAAGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * * * **
3223402 GCCAATAG-GCTGCTCTAAGGCCAACGACATTGGACTTTAAGGTGGTGAGGGT
1 GCCAAT-GTGCTGATCCAAGGCCAACGACATTGGACTTAAAGAT-GTAAATGT
* * * ** * * * * * * * *
3223454 GCAAAT-TAGCTAATTCATTGCTAGCGACACTAGTCTTAGAGATGGCAAAGGT
1 GCCAATGT-GCTGATCCAAGGCCAACGACATTGGACTTAAAGAT-GTAAATGT
* * * * * * ** *
3223506 GCCAATGTGATGAGCCACGGCCAACGACAGTGGAATTAAATATAAAAAAGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGAT-GTAAATGT
* * * * * * * ** *
3223558 GCTAATATGTTGATCTAAGGCTAACGACGTTGGACTTAAAGATTGCAAGGGC
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGA-TGTAAATGT
* * *** * ** *
3223610 GCCAATGTGCTAATTCAAGGCTGGC-ACATTGGACATAAAGATGATAAGGGC
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * * *** * * * * * *
3223661 ACCAATATGCTGAT-TAATGGCTAACGATGCTAGTCTTAGAGAGGCAAAGGT
1 GCCAATGTGCTGATCCAA-GGCCAACGACATTGGACTTAAAGATGTAAATGT
* * * * * * *
3223712 GCCAATGTGCAGATCCAAGGCTAAAGACATTAGAGTTCAACATG-ATAATGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGTA-AAT-GT
* * * **
3223764 GCCAATATGCTGATCAAAGGCCAACGACATTGGACATAAAGATGATAAGGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * * * * * * * * * *
3223816 GCAAATTTGCT-AACTC-ATGCCTAGCAACACTAGTCTTAGAGATGAAGAAGGT
1 GCCAATGTGCTGATC-CAAGGCC-AACGACATTGGACTTAAAGATGTA-AATGT
* * * * * * * *
3223868 G--ACTGTGTTGATCAAAGGCTAGCGACAATGGACTTAAAGATGATAAAGGC
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * * * ** *
3223918 ACCAATATGCTGATCTAAGGCTAACGACAATGGACTTAGTGAT-TATAAGGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGTA-AA-TGT
* * * * * *
3223970 GCCAATGTGCTAATCCAAGGCCAATGACTTTGGGCATAAAAGATGATAGGA-GT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGAC-TTAAAGATG-TA-AATGT
* * * * ** * * * * *
3224023 ACAAATCTGCTGATTCATTG-C--C-AC-TT-GTCTTAGAGAAGACAAAGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* *
3224069 GCTAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATG-ATAATGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGTA-AAT-GT
* * * * * ** * *
3224121 GCCAATAG-GTTCATCTAGGGCTAAAAACATTGCACTTAAAGAT-TATAAGGGT
1 GCCAAT-GTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGTA-AA-TGT
* * * ** * **
3224173 GCCAATGTGTTGATTCAAGGCTAGTGACATTGGACTTAAAAATGATAAGGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * * * *
3224225 GCCGATGTGCTGATTCATGGCCAATGACATTGGTCTTAAAGATG-CAATGAT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGTAAATG-T
** *
3224276 GCCGGTGTGCTGATCCAAGGCCAACGACATTGGACTTAAGGATGATAAATGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * * **
3224328 GCCAATTTGCTGTTCCAAGGCAAACTACATTGGACTTAAAGATGTTAAGGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * * ** * *
3224380 GCCAATGTGCTGATCCAAGGCAAACAACGTTTGAACTTATGGATGACAAAAGT
1 GCCAATGTGCTGATCCAAGGCCAACGAC-ATTGGACTTAAAGATG-TAAATGT
* * * * *
3224433 GCGAATGTGCTAATCCAGGGCCAGCGACATTGGACTTAAAGATGATAAAAT-C
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-T-AAATGT
* * ** * ** * * *
3224485 ACCAATATATTGATCCAAGGCTAGTGACGTTGGACTTCAAGAT-TACAAAGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGT--AAATGT
* ** * *
3224537 GCCAATGTACTGATCCAAGGCCTGCGACATTGGACTTAAAGACTATAAAGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGA-TGTAAATGT
* * * *
3224589 GCCAATGTGTTGACCCAAGGCCAACGTCATTGGACTTAAAGATGATAAAGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * * * * * * * * *
3224641 ACCAGTGTGTTGATCCAAGGCCAATGACATTAGAATAAAAGCTGACAAAGGC
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
** ** ** * * * **
3224693 GCCGCTCCGAC-GATATAAGGCTAGCAACATTGGACTTAAAGAT-TATAGGGGT
1 GCCAATGTG-CTGATCCAAGGCCAACGACATTGGACTTAAAGATGTA-A-ATGT
* * * * * * * **
3224745 GGCAATGTACTGATCCAAGGCTAGCGACGTTAGACTTAAAGATAATAAGGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGAT-GTAAATGT
* ** * * * * *
3224797 TCCAATGCACTGATTCAAGGCCAACAACATTGAACTTAAAGAGGATAAAGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * * * * * * *
3224849 CCCAATGTGCTGATTCATGGCAAACGAGACTGGTCTTAGAGATGCT-AAGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * * * * *
3224900 GCCAATATGCTGATCCAAGGTCAGCAACGTTGGACTTAAAGATGATAAAGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* * ** * * * * *
3224952 GCCAATGTGCTGATACAAGGCTAGTGACACTGGACTTAATGATTTTAAGGAT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGTAAATG-T
* *
3225004 GCCAATGTGCTGATCCAAGGCCAACGACATTAGACTTAAAGATGATAAAGGT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATG-TAAATGT
* *
3225056 GCCAATGGGCTGCTCCAAGGCCAACGACATTGGACTT
1 GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTT
3225093 TAAGGTGGTG
Statistics
Matches: 1568, Mismatches: 466, Indels: 140
0.72 0.21 0.06
Matches are distributed among these distances:
45 1 0.00
46 24 0.02
47 3 0.00
48 2 0.00
49 3 0.00
50 41 0.03
51 297 0.19
52 1106 0.71
53 82 0.05
54 6 0.00
55 3 0.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (51 bp):
GCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGTAAATGT
Found at i:3224655 original size:156 final size:156
Alignment explanation
Indices: 3222929--3225092 Score: 1350
Period size: 156 Copynumber: 14.0 Consensus size: 156
3222919 AAGGCTCATA
* * * * * *
3222929 ATAAAGGAGCCAATGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGATAATGGTGTCGA
1 ATAAAGGTGCCAATGTGCTGATCCAAGGCTAGTGACATTGGACTTAAAGATGATAAAGGTGCCAA
* * ** * * * * *
3222994 TGTGCTAATTCTTGGCCAACGACACTGGTCTTAAAGATG-CAAAGGTGTCGATGTGCTGATCCAA
66 TGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAA
*
3223058 GGCCAACGACATTGGACTTAAAGACG
131 GGCCAACGACATTGGACTTAAAGATG
* * * * * * *
3223084 ATAAATGTGCTAATTTGCTGATCCAAGGCAAACT-AC-TTAGACTTAAAGATGATAAGGGTGCCA
1 ATAAAGGTGCCAATGTGCTGATCCAAGGC-TAGTGACATTGGACTTAAAGATGATAAAGGTGCCA
* * * * * * *
3223147 ATGTGCT-ATTTCAAGGCCAGCAACACTGGACTTCATGATGATAAAGGTGCCAATGTGCTGATTC
65 ATGTGCTGA-TCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCC
* * * *
3223211 ATGGCCAACGACACTGGTCTTAGAGATG
129 AAGGCCAACGACATTGGACTTAAAGATG
* * * * ***
3223239 CT-AAGGTGCTAATGTGCTGATCCAAAGCCAACAACATTGGACTTAAAGATGATAAAGGTGCCAA
1 ATAAAGGTGCCAATGTGCTGATCCAAGGCTAGTGACATTGGACTTAAAGATGATAAAGGTGCCAA
* * * ** *
3223303 TGTGCTGATACAAGGCCAGCGACATTGGACTTAATGATTTTAAGGGTGCCAATGTGCTGATCCAA
66 TGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAA
* *
3223368 TGCCAACGACATTGGACATAAAGATG
131 GGCCAACGACATTGGACTTAAAGATG
* * * ** * * * * * *
3223394 ATAAAGGTGCCAATAG-GCTGCTCTAAGGCCAACGACATTGGACTTTAAGGTGGTGAGGGTGCAA
1 ATAAAGGTGCCAAT-GTGCTGATCCAAGGCTAGTGACATTGGACTTAAAGATGATAAAGGTGCCA
* * ** * * * * * * ** * *
3223458 AT-TAGCTAATTCATTGCTAGCGACACTAGTCTTAGAGATGGCAAAGGTGCCAATGTGATGAGCC
65 ATGT-GCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCC
* * * * *
3223522 ACGGCCAACGACAGTGGAATTAAATATA
129 AAGGCCAACGACATTGGACTTAAAGATG
* * * * * ** * * * *
3223550 AAAAAGGTGCTAATATGTTGATCTAAGGCTAACGACGTTGGACTTAAAGATTG-CAAGGGCGCCA
1 ATAAAGGTGCCAATGTGCTGATCCAAGGCTAGTGACATTGGACTTAAAGA-TGATAAAGGTGCCA
* * *** * * ** * *
3223614 ATGTGCTAATTCAAGGCTGGC-ACATTGGACATAAAGATGATAAGGGCACCAATATGCTGAT-TA
65 ATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCA
* *** * * *
3223677 ATGGCTAACGATGCTAGTCTTAGAGA-G
130 A-GGCCAACGACATTGGACTTAAAGATG
** * ** * * * * *
3223704 GCAAAGGTGCCAATGTGCAGATCCAAGGCTAAAGACATTAGAGTTCAACATGATAATGGTGCCAA
1 ATAAAGGTGCCAATGTGCTGATCCAAGGCTAGTGACATTGGACTTAAAGATGATAAAGGTGCCAA
* * * * * * *
3223769 TATGCTGATCAAAGGCCAACGACATTGGACATAAAGATGATAAGGGTGCAAATTTGCT-AACTC-
66 TGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATC-CA
* * * * * * *
3223832 ATGCCTAGCAACACTAGTCTTAGAGATG
130 AGGCC-AACGACATTGGACTTAAAGATG
* * * * * **
3223860 A-AGAAGGTG--ACTGTGTTGATCAAAGGCTAGCGACAATGGACTTAAAGATGATAAAGGCACCA
1 ATA-AAGGTGCCAATGTGCTGATCCAAGGCTAGTGACATTGGACTTAAAGATGATAAAGGTGCCA
* * * * ** * * *
3223922 ATATGCTGATCTAAGGCTAACGACAATGGACTTAGTGATTATAAGGGTGCCAATGTGCTAATCCA
65 ATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCA
* * * *
3223987 AGGCCAATGACTTTGGGCATAAAAGATG
130 AGGCCAACGACATTGGAC-TTAAAGATG
* * * * * * * * * * *
3224015 AT-AGGAGTACAAATCTGCTGATTC-A---T--TGCCACTT-GTCTTAGAGAAGACAAAGGTGCT
1 ATAAAG-GTGCCAATGTGCTGATCCAAGGCTAGTGACA-TTGGACTTAAAGATGATAAAGGTGCC
* * * *
3224072 AATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAATGGTGCCAATAG-GTTCATC
64 AATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAAT-GTGCTGATC
* * * ** * *
3224136 TAGGGCTAAAAACATTGCACTTAAAGATT
128 CAAGGCCAACGACATTGGACTTAAAGATG
* * * * * *
3224165 ATAAGGGTGCCAATGTGTTGATTCAAGGCTAGTGACATTGGACTTAAAAATGATAAGGGTGCCGA
1 ATAAAGGTGCCAATGTGCTGATCCAAGGCTAGTGACATTGGACTTAAAGATGATAAAGGTGCCAA
* * * * * * * **
3224230 TGTGCTGATTCATGGCCAATGACATTGGTCTTAAAGATG-CAATGATGCCGGTGTGCTGATCCAA
66 TGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAA
*
3224294 GGCCAACGACATTGGACTTAAGGATG
131 GGCCAACGACATTGGACTTAAAGATG
* * * * * * *
3224320 ATAAATGTGCCAATTTGCTGTTCCAAGGCAAACT-ACATTGGACTTAAAGATGTTAAGGGTGCCA
1 ATAAAGGTGCCAATGTGCTGATCCAAGGC-TAGTGACATTGGACTTAAAGATGATAAAGGTGCCA
* * * * ** * * * *
3224384 ATGTGCTGATCCAAGGCAAACAACGTTTGAACTTATGGATGACAAAAGTGCGAATGTGCTAATCC
65 ATGTGCTGATCCAAGGCCAACGAC-ATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCC
* *
3224449 AGGGCCAGCGACATTGGACTTAAAGATG
129 AAGGCCAACGACATTGGACTTAAAGATG
* * * ** * * * *
3224477 ATAAA-ATCACCAATATATTGATCCAAGGCTAGTGACGTTGGACTTCAAGATTACAAAGGTGCCA
1 ATAAAGGT-GCCAATGTGCTGATCCAAGGCTAGTGACATTGGACTTAAAGATGATAAAGGTGCCA
* ** * *
3224541 ATGTACTGATCCAAGGCCTGCGACATTGGACTTAAAGACT-ATAAAGGTGCCAATGTGTTGACCC
65 ATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGA-TGATAAAGGTGCCAATGTGCTGATCC
*
3224605 AAGGCCAACGTCATTGGACTTAAAGATG
129 AAGGCCAACGACATTGGACTTAAAGATG
* * * * * * * * * * * **
3224633 ATAAAGGTACCAGTGTGTTGATCCAAGGCCAATGACATTAGAATAAAAGCTGACAAAGGCGCCGC
1 ATAAAGGTGCCAATGTGCTGATCCAAGGCTAGTGACATTGGACTTAAAGATGATAAAGGTGCCAA
** ** * * * * ** * *
3224698 TCCGAC-GATATAAGGCTAGCAACATTGGACTTAAAGATTATAGGGGTGGCAATGTACTGATCCA
66 TGTG-CTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCA
* * * * *
3224762 AGGCTAGCGACGTTAGACTTAAAGATA
130 AGGCCAACGACATTGGACTTAAAGATG
* * ** * * *** * * *
3224789 ATAAGGGTTCCAATGCACTGATTCAAGGCCAACAACATTGAACTTAAAGAGGATAAAGGTCCCAA
1 ATAAAGGTGCCAATGTGCTGATCCAAGGCTAGTGACATTGGACTTAAAGATGATAAAGGTGCCAA
* * * * * * * * *
3224854 TGTGCTGATTCATGGCAAACGAGACTGGTCTTAGAGATGCT-AAGGTGCCAATATGCTGATCCAA
66 TGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAA
* * * *
3224918 GGTCAGCAACGTTGGACTTAAAGATG
131 GGCCAACGACATTGGACTTAAAGATG
* * * * *
3224944 ATAAAGGTGCCAATGTGCTGATACAAGGCTAGTGACACTGGACTTAATGAT-TTTAAGGATGCCA
1 ATAAAGGTGCCAATGTGCTGATCCAAGGCTAGTGACATTGGACTTAAAGATGATAAAGG-TGCCA
* * *
3225008 ATGTGCTGATCCAAGGCCAACGACATTAGACTTAAAGATGATAAAGGTGCCAATGGGCTGCTCCA
65 ATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCA
3225073 AGGCCAACGACATTGGACTT
130 AGGCCAACGACATTGGACTT
3225093 TAAGGTGGTG
Statistics
Matches: 1518, Mismatches: 441, Indels: 99
0.74 0.21 0.05
Matches are distributed among these distances:
150 23 0.02
151 86 0.06
152 2 0.00
153 5 0.00
154 247 0.16
155 503 0.33
156 532 0.35
157 120 0.08
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (156 bp):
ATAAAGGTGCCAATGTGCTGATCCAAGGCTAGTGACATTGGACTTAAAGATGATAAAGGTGCCAA
TGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAA
GGCCAACGACATTGGACTTAAAGATG
Found at i:3226748 original size:12 final size:11
Alignment explanation
Indices: 3226726--3226801 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3226716 AGAGAAAGAA
*
3226726 GAGAGAGGAGG
1 GAGATAGGAGG
3226737 GATGATAGGAGG
1 GA-GATAGGAGG
*
3226749 AGAGACAGGA--
1 -GAGATAGGAGG
*
3226759 GAGATAGTA--
1 GAGATAGGAGG
3226768 GAGATAGGAGG
1 GAGATAGGAGG
3226779 GATGATAGGAGG
1 GA-GATAGGAGG
*
3226791 AGAGACAGGAG
1 -GAGATAGGAG
3226802 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:3226758 original size:24 final size:24
Alignment explanation
Indices: 3226725--3226810 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3226715 AAGAGAAAGA
*
3226725 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
3226749 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
3226767 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
3226791 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
3226811 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:3226777 original size:42 final size:42
Alignment explanation
Indices: 3226716--3226834 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3226706 TAGCCCTCAA
* *
3226716 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
3226758 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
3226800 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
3226835 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:3238331 original size:42 final size:42
Alignment explanation
Indices: 3238276--3238394 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3238266 TTCTTCTCTC
* *
3238276 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
3238318 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
3238360 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3238395 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3238335 original size:12 final size:11
Alignment explanation
Indices: 3238309--3238384 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3238299 TCTATTATCT
*
3238309 CTCCTGTCTCTC
1 CTCCTATCTC-C
3238321 CTCCTATCATCC
1 CTCCTATC-TCC
3238333 CTCCTATCT--
1 CTCCTATCTCC
*
3238342 CTACTATCT--
1 CTCCTATCTCC
*
3238351 CTCCTGTCTCTC
1 CTCCTATCTC-C
3238363 CTCCTATCATCC
1 CTCCTATC-TCC
*
3238375 CTCCTCTCTC
1 CTCCTATCTC
3238385 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:3238336 original size:24 final size:24
Alignment explanation
Indices: 3238300--3238385 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3238290 CCTCCTCTCT
* *
3238300 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
3238324 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
3238345 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
3238366 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
3238386 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:3238360 original size:18 final size:18
Alignment explanation
Indices: 3238291--3238361 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
3238281 CCTGTCATCC
* *
3238291 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
3238309 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
3238331 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
3238351 CTCCTGTCTCT
1 CTCCTGTCTCT
3238362 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:3240991 original size:52 final size:51
Alignment explanation
Indices: 3240850--3242650 Score: 1048
Period size: 52 Copynumber: 34.9 Consensus size: 51
3240840 CGACACTAGT
* * * *
3240850 CTTAGAGATGACAAAGGTGCTAATGTGCTGATCCAAGG-CAGCGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCA-CGACATTGGA
* * *
3240901 CTTAAAGATGATAAAGGTGCCAATAG-GTTCA-TCTAAGGCTCACAACATTGGA
1 CTTAAAGATGATAAAGGTGCCAAT-GTGCTGATTC-AAGGC-CACGACATTGGA
* * * *
3240953 CTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAGTGACAATGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCA-CGACATTGGA
* * * * * * *
3241005 CTTAAAGATGATAAGGGTGCCGATGTACTGGTTCATGGCCAACGACACTGGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATTGGA
* ** * * *
3241057 CTTAAAGATGCA-AAA-GTGTCGGTGTACTGA-TCAAGGCCAATGGCATTGGA
1 CTTAAAGATG-ATAAAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATTGGA
* * * * * * * *
3241107 CTTAAAGACGATAAATGT-CCTAATTTGTTGATCCAAGGCAAACTACGTTGGA
1 CTTAAAGATGATAAAGGTGCC-AATGTGCTGATTCAAGGC-CACGACATTGGA
* ** *
3241159 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACCCTGGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATTGGA
* * * * * *
3241211 CTTAGAGATGCT-AAGGAGCCAATGTGCTGATCCAAGGCCAGCAACATTAGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCA-CGACATTGGA
*
3241262 CTTAAAGATGATAAAGGTGCCAATGTGCTGATACAAGGCCAGCGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCA-CGACATTGGA
* ** ** * * *
3241314 CTTAATGATTTTAGGGGTGCCAATGTGCTGATCCTAGGCCAATGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATTGGA
* * * *
3241366 CTTAAAGATGATATAGGTGCCAATGGGCTGCTCCAAGGCCAACGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATTGGA
* * * * * * * * * * * * *
3241418 CTTTAAGGTGGTGAGGGTGCAAAT-TAGCTAATTTATGGCTAGCGACACTAGT
1 CTTAAAGATGATAAAGGTGCCAATGT-GCTGATTCAAGGCCA-CGACATTGGA
* * * * * **
3241470 CTTAAAGATGACAAAGGTGCTAATGTGTTGATCCAAGGCCAACGATAGCGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATTGGA
* * * ** * * * *
3241522 ATTAAAGGTAATAAAGGCACTAATATGTTGA-TCTAAGGCAAACGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTC-AAGGC-CACGACATTGGA
* * * *
3241574 CTTAAAAATTG-CAAACGTGCCAATGTGCTAATTCAAGGCCGAC-ACATTGGA
1 CTTAAAGA-TGATAAAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATTGGA
* * * * * * * *
3241625 CATAAAGATGATAAGGGCGCCAATATGTTGATTCAAGGCTAACGACACTGGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGC-CACGACATTGGA
* * * *
3241677 CTTAGAGAGGCA-AAA-GTGCCAATGTGCTGATCCAAGGCCAAGAACATTGGA
1 CTTAAAGATG-ATAAAGGTGCCAATGTGCTGATTCAAGGCCACG-ACATTGGA
* * * * *
3241728 GTTTAAGATGATAATGGTGCCAATATGCTGATTAAAGGCCAACGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATTGGA
* * * * * * * * *
3241780 CATAAGGATGATAAGGGTGCAAATTTGCTGATTCATGGCCAGCGACACTAGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCA-CGACATTGGA
* * * * * * *
3241832 CTTAGAGAAGA-AGAAGGTGACAATGTGTTGATCCAAGCCCAACGACAATGGA
1 CTTAAAGATGATA-AAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATTGGA
** * * * * * *
3241884 CTTAAAGATGATAAAGGCACCGATATGCT-AATCTAAGGCTAACGATAATGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTC-AAGGC-CACGACATTGGA
** * * * * * *
3241936 CTTAGGGATTATAAGGGTGCCAATGTGATAATCCAAGGCCAACGACAATGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATTGGA
* ** * * ** *
3241988 CATAAAGA-GATAGGGGTGCAAATCTGCTGATTCATTG-C-C-AC--TGGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCACGACATTGGA
* * * *
3242033 CTTAAAGATGACAAAGGTGCCAATGTGTTGATCCAAGGCCAGTGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCA-CGACATTGGA
* * * * * * *
3242085 CTTAAAGATGATAAAGTTGGCAATAG-GTTCA-TCTAAGGCTAACAACGTTGGA
1 CTTAAAGATGATAAAGGTGCCAAT-GTGCTGATTC-AAGGC-CACGACATTGGA
* * * *
3242137 CTTAAAGATTATAAGGGTGCCAATGTGCTAATTCAAGGCCAGTGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCA-CGACATTGGA
* * * * ** * *
3242189 CTTAAGGATGATAAGGGTGCCGATGTGCTGAGTCTTGGCCAACGACACTGGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATTGGA
* * * ** * *
3242241 TTTAAAGATG-CAAAGGTGTCGGTGTGTTGA-TCAAAGGCCAATGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTC-AAGGCC-ACGACATTGGA
* * * * * * * * *
3242292 CTTTAAGACGATAAATGTGCTAATTTGCTGATCCAAGGCAAACTAC-TTAGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGC-CACGACATTGGA
* * * * *
3242343 CTTAATGATGATAAGGGTGCCAACGTGCTAATTCAAGGCCAGCAACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCA-CGACATTGGA
* * * * * *
3242395 CTTCATGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTAGT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATTGGA
* * * * * * *
3242447 CTTAGAGATGCT-AAGGTGCTAATGTACTGATCCAAAGCCAACAACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATTGGA
* *
3242498 CTTAAAGATGATAAAGGTGCCAATGTGCTGATACAAGGCTAGCGACATTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCA-CGACATTGGA
* ** * * * **
3242550 CTTAATGATTTTAAGGGTGCCAATGTGCTGATCCAAGGCCAATGATGTTGGA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATTGGA
* * *
3242602 CTTAAAGATGATAAAGGTGCCAATGGGCTGCTCCAAGGCCAACGACATT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCC-ACGACATT
3242651 AGAGTTTAAG
Statistics
Matches: 1305, Mismatches: 377, Indels: 135
0.72 0.21 0.07
Matches are distributed among these distances:
45 10 0.01
46 20 0.02
47 3 0.00
48 1 0.00
49 1 0.00
50 41 0.03
51 300 0.23
52 900 0.69
53 29 0.02
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.24
Consensus pattern (51 bp):
CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCACGACATTGGA
Found at i:3241189 original size:206 final size:207
Alignment explanation
Indices: 3240840--3242732 Score: 1065
Period size: 207 Copynumber: 9.2 Consensus size: 207
3240830 TCATGGCTAG
* * * *
3240840 CGACACTAGTCTTAGAGATGACAAAGGTGCTAATGTGCTGATCCAAGG-CAGCGACATTGGACTT
1 CGACACTAGTCTTAAAGATG-CAAAAGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTT
* * * ** * * *
3240904 AAAGATGATAAAGGTGCCAATAGGTTCATCTAAGGCTCACAACATTGGACTTAAAGATTATAAGG
65 AAAGATGATAAAGGTGCCAATATGTTGATCCAAGGCAAACGACATTGGACTTAAAGATGATAAAG
* * *
3240969 GTGCCAATGTGCTGATTCAAGGCCAGTGACAATGGACTTAAAGATGATAAGGGTGCCGATGTACT
130 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAGGGTGCCAATGTACT
* *
3241034 GGTTCATGGCCAA
195 GATTCAAGGCCAA
* * ** * * *
3241047 CGACACTGGTCTTAAAGATGCAAAAGTGTCGGTGTACTGAT-CAAGGCCAATGGCATTGGACTTA
1 CGACACTAGTCTTAAAGATGCAAAAGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTA
* * * * *
3241111 AAGACGATAAATGT-CCTAATTTGTTGATCCAAGGCAAACTACGTTGGACTTAAAGATGATAAAG
66 AAGATGATAAAGGTGCC-AATATGTTGATCCAAGGCAAACGACATTGGACTTAAAGATGATAAAG
* * ** * * * * *
3241175 GTGCCAATGTGCTGATTCATGGCCAACGACCCTGGTCTTAGAGATGCTAA-GGAGCCAATGTGCT
130 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAGGGTGCCAATGTACT
* *
3241239 GATCCAAGGCCAG
195 GATTCAAGGCCAA
* * * * *
3241252 CAACATTAGACTTAAAGATG-ATAAAGGTGCCAATGTGCTGATACAAGGCCAGCGACATTGGACT
1 CGACACTAGTCTTAAAGATGCA-AAA-GTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACT
* ** ** * * * * * *
3241316 TAATGATTTTAGGGGTGCCAATGTGCTGATCCTAGGCCAATGACATTGGACTTAAAGATGATATA
64 TAAAGATGATAAAGGTGCCAATATGTTGATCCAAGGCAAACGACATTGGACTTAAAGATGATAAA
* * * * * * * * *
3241381 GGTGCCAATGGGCTGCTCCAAGGCCAACGACATTGGACTTTAAGGTGGTGAGGGTGCAAAT-TAG
129 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAGGGTGCCAATGTA-
* * * * *
3241445 CTAATTTATGGCTAG
193 CTGATTCAAGGCCAA
* * * * ** *
3241460 CGACACTAGTCTTAAAGATGACAAAGGTGCTAATGTGTTGATCCAAGGCCAACGATAGCGGAATT
1 CGACACTAGTCTTAAAGATG-CAAAAGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTT
* * ** * * * *
3241525 AAAGGTAATAAAGGCACTAATATGTTGATCTAAGGCAAACGACATTGGACTTAAAAATTG-CAAA
65 AAAGATGATAAAGGTGCCAATATGTTGATCCAAGGCAAACGACATTGGACTTAAAGA-TGATAAA
* * * * * *
3241589 CGTGCCAATGTGCTAATTCAAGGCC-GAC-ACATTGGACATAAAGATGATAAGGGCGCCAATATG
129 GGTGCCAATGTGCTGATTCAAGGCCAG-CGACATTGGACTTAAAGATGATAAGGGTGCCAATGTA
* *
3241652 TTGATTCAAGGCTAA
193 CTGATTCAAGGCCAA
* * * *
3241667 CGACACTGGTCTTAGAGAGGCAAAAGTGCCAATGTGCTGATCCAAGGCCAA-GAACATTGGAGTT
1 CGACACTAGTCTTAAAGATGCAAAAGTGCCAATGTGCTGATCCAAGGCCAACG-ACATTGGACTT
* * * ** * * * *
3241731 TAAGATGATAATGGTGCCAATATGCTGATTAAAGGCCAACGACATTGGACATAAGGATGATAAGG
65 AAAGATGATAAAGGTGCCAATATGTTGATCCAAGGCAAACGACATTGGACTTAAAGATGATAAAG
* * * * * * * * * * **
3241796 GTGCAAATTTGCTGATTCATGGCCAGCGACACTAGTCTTAGAGAAGA-AGAAGGTGACAATGTGT
130 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATA-AGGGTGCCAATGTAC
* *
3241860 TGATCCAAGCCCAA
194 TGATTCAAGGCCAA
* * * * * * * * * *
3241874 CGACAATGGACTTAAAGATG-ATAAAG-GCACCGATATGCTAATCTAAGGCTAACGATAATGGAC
1 CGACACTAGTCTTAAAGATGCA-AAAGTG--CCAATGTGCTGATCCAAGGCCAACGACATTGGAC
** * * * * * * * * *
3241937 TTAGGGATTATAAGGGTGCCAATGTGATAATCCAAGGCCAACGACAATGGACATAAAGA-GATAG
63 TTAAAGATGATAAAGGTGCCAATATGTTGATCCAAGGCAAACGACATTGGACTTAAAGATGATAA
* * * ** * * * *
3242001 GGGTGCAAATCTGCTGATTCATTG-C--C-AC--TGGTCTTAAAGATGACAAAGGTGCCAATGTG
128 AGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAGGGTGCCAATGTA
* * *
3242060 TTGATCCAAGGCCAG
193 CTGATTCAAGGCCAA
* * * * * * * * * * *
3242075 TGACATTGGACTTAAAGATG-ATAAAGTTGGCAATAG-GTTCATCTAAGGCTAACAACGTTGGAC
1 CGACACTAGTCTTAAAGATGCA-AAAG-TGCCAAT-GTGCTGATCCAAGGCCAACGACATTGGAC
* * * * * * * ** *
3242138 TTAAAGATTATAAGGGTGCCAATGTGCTAATTCAAGGCCAGTGACATTGGACTTAAGGATGATAA
63 TTAAAGATGATAAAGGTGCCAATATGTTGATCCAAGGCAAACGACATTGGACTTAAAGATGATAA
* * * ** * * ** * **
3242203 GGGTGCCGATGTGCTGAGTCTTGGCCAACGACACTGGTTTTAAAGATGCA-AA-GGTGTCGGTGT
128 AGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG-ATAAGGGTGCCAATGT
**
3242266 GTTGA-TCAAAGGCCAA
192 ACTGATTC-AAGGCCAA
* * * * * * * * * * *
3242282 TGACATTGGACTTTAAGACG-ATAAATGTGCTAATTTGCTGATCCAAGGCAAACTAC-TTAGACT
1 CGACACTAGTCTTAAAGATGCA-AAA-GTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACT
* * ** * * * * * * * *
3242345 TAATGATGATAAGGGTGCCAACGTGCTAATTCAAGGCCAGCAACATTGGACTTCATGATGATAAA
64 TAAAGATGATAAAGGTGCCAATATGTTGATCCAAGGCAAACGACATTGGACTTAAAGATGATAAA
* * * * * * * *
3242410 GGTGCCAATGTGCTGATTCATGGCCAACGACACTAGTCTTAGAGATGCTAA-GGTGCTAATGTAC
129 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAGGGTGCCAATGTAC
* *
3242474 TGATCCAAAGCCAA
194 TGATTCAAGGCCAA
* * * * * * *
3242488 CAACATTGGACTTAAAGATG-ATAAAGGTGCCAATGTGCTGATACAAGGCTAGCGACATTGGACT
1 CGACACTAGTCTTAAAGATGCA-AAA-GTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACT
* ** * * * * * **
3242552 TAATGATTTTAAGGGTGCCAATGTGCTGATCCAAGGCCAATGATGTTGGACTTAAAGATGATAAA
64 TAAAGATGATAAAGGTGCCAATATGTTGATCCAAGGCAAACGACATTGGACTTAAAGATGATAAA
* * * * * * * * * * *
3242617 GGTGCCAATGGGCTGCTCCAAGGCCAACGACATTAGAGTTTAAGGTGGTGAGGGTGCAAAT-TAG
129 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAGGGTGCCAATGTA-
* ** * *
3242681 CTAATTCATTGCTAG
193 CTGATTCAAGGCCAA
*
3242696 CGACACTAGTCTTAAAGATGGCAAAGGTGCCAATGTG
1 CGACACTAGTCTTAAAGAT-GCAAAAGTGCCAATGTG
3242733 ATGTTCTGAT
Statistics
Matches: 1317, Mismatches: 325, Indels: 87
0.76 0.19 0.05
Matches are distributed among these distances:
201 136 0.10
202 23 0.02
203 4 0.00
204 2 0.00
205 50 0.04
206 408 0.31
207 421 0.32
208 262 0.20
209 9 0.01
210 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.25
Consensus pattern (207 bp):
CGACACTAGTCTTAAAGATGCAAAAGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTA
AAGATGATAAAGGTGCCAATATGTTGATCCAAGGCAAACGACATTGGACTTAAAGATGATAAAGG
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAGGGTGCCAATGTACTG
ATTCAAGGCCAA
Found at i:3241268 original size:103 final size:102
Alignment explanation
Indices: 3240850--3242650 Score: 1170
Period size: 104 Copynumber: 17.5 Consensus size: 102
3240840 CGACACTAGT
* * * * *
3240850 CTTAGAGATGACAAAGGTGCTAATGTGCTGATCCAAGG-CAGCGACATTGGACTTAAAGATGATA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTT-AAGATGAT-
* * * *
3240914 AAGGTGCCAATAG-GTTCATCTAAGGCTC-ACAACATTGGA
64 AAGGTGCCAAT-GTGCTGATCCAAGGC-CAACGACATTGGA
* * ** *
3240953 CTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAGTGACAATGGACTTAAAGATGATA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTT-AAGATGATA
* * * * * * *
3241018 AGGGTGCCGATGTACTGGTTCATGGCCAACGACACTGGT
65 A-GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGA
* ** * * * *
3241057 CTTAAAGATGCA-AAA-GTGTCGGTGTACTGA-TCAAGGCCAATGGCATTGGACTTAAAGACGAT
1 CTTAAAGATG-ATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTT-AAGATGAT
* * * * * *
3241119 AA-ATGTCCTAATTTGTTGATCCAAGGCAAACTACGTTGGA
64 AAGGTG-CC-AATGTGCTGATCCAAGGCCAACGACATTGGA
* ** * *
3241159 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACCCTGGTCTTAGAGATGCTA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTA-AGATGATA
* * * *
3241224 AGGAGCCAATGTGCTGATCCAAGGCCAGCAACATTAGA
65 AGGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGA
* * **
3241262 CTTAAAGATGATAAAGGTGCCAATGTGCTGATACAAGGCCAGCGACATTGGACTTAATGATTTTA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAA-GATGATA
* * *
3241327 GGGGTGCCAATGTGCTGATCCTAGGCCAATGACATTGGA
65 -AGGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGA
* * * * * *
3241366 CTTAAAGATGATATAGGTGCCAATGGGCTGCTCCAAGGCCAACGACATTGGACTTTAAGGTGGTG
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGAC-TTAAGATGAT-
* * * ** * * * * * *
3241431 AGGGTGCAAAT-TAGCTAATTTATGGCTAGCGACACTAGT
64 AAGGTGCCAATGT-GCTGATCCAAGGCCAACGACATTGGA
* * * * * ** * * *
3241470 CTTAAAGATGACAAAGGTGCTAATGTGTTGATCCAAGGCCAACGATAGCGGAATTAAAGGTAATA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTT-AAGATGATA
* * * * *
3241535 AAG-GCACTAATATGTTGATCTAAGGCAAACGACATTGGA
65 AGGTGC-C-AATGTGCTGATCCAAGGCCAACGACATTGGA
* * * * * *
3241574 CTTAAAAATTG-CAAACGTGCCAATGTGCTAATTCAAGGCCGAC-ACATTGGACATAAAGATGAT
1 CTTAAAGA-TGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGAC-TTAAGATGAT
* * * * * * *
3241637 AAGGGCGCCAATATGTTGATTCAAGGCTAACGACACTGGT
64 AA-GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGA
* * * *
3241677 CTTAGAGAGGCA-AAA-GTGCCAATGTGCTGATCCAAGGCCAA-GAACATTGGAGTTTAAGATGA
1 CTTAAAGATG-ATAAAGGTGCCAATGTGCTGATTCAAGGCCAACG-ACATTGGA-CTTAAGATGA
* **
3241739 TAATGGTGCCAATATGCTGATTAAAGGCCAACGACATTGGA
63 TAA-GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGA
* * * * * * * * * * * *
3241780 CATAAGGATGATAAGGGTGCAAATTTGCTGATTCATGGCCAGCGACACTAGTCTTAGAGAAGAAG
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTA-AGATG-AT
* * * *
3241845 AAGGTGACAATGTGTTGATCCAAGCCCAACGACAATGGA
64 AAGGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGA
** * * * * * * * *
3241884 CTTAAAGATGATAAAGGCACCGATATGCT-AATCTAAGGCTAACGATAATGGACTTAGGGATTAT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTC-AAGGCCAACGACATTGGACTTA-AGATGAT
* * *
3241948 AAGGGTGCCAATGTGATAATCCAAGGCCAACGACAATGGA
64 AA-GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGA
* ** * * ** * *
3241988 CATAAAGA-GATAGGGGTGCAAATCTGCTGATTCATTG-C--C-AC--TGGTCTTAAAGATGACA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTT-AAGATGA-T
* **
3242046 AAGGTGCCAATGTGTTGATCCAAGGCCAGTGACATTGGA
64 AAGGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGA
* * * * * * * *
3242085 CTTAAAGATGATAAAGTTGGCAATAG-GTTCA-TCTAAGGCTAACAACGTTGGACTTAAAGATTA
1 CTTAAAGATGATAAAGGTGCCAAT-GTGCTGATTC-AAGGCCAACGACATTGGACTT-AAGATGA
* * **
3242148 TAAGGGTGCCAATGTGCTAATTCAAGGCCAGTGACATTGGA
63 TAA-GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGA
* * * * ** * **
3242189 CTTAAGGATGATAAGGGTGCCGATGTGCTGAGTCTTGGCCAACGACACTGGTTTTAAAGATGCA-
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTT-AAGATG-AT
* ** * * *
3242253 AAGGTGTCGGTGTGTTGATCAAAGGCCAATGACATTGGA
64 AAGGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGA
* * * * * * * * *
3242292 CTTTAAGACGATAAATGTGCTAATTTGCTGATCCAAGGCAAACTAC-TTAGACTTAATGATGATA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAA-GATGATA
* * * * *
3242356 AGGGTGCCAACGTGCTAATTCAAGGCCAGCAACATTGGA
65 A-GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGA
* * * * * * *
3242395 CTTCATGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTAGTCTTAGAGATGCTA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTA-AGATGATA
* * * *
3242460 AGGTGCTAATGTACTGATCCAAAGCCAACAACATTGGA
65 AGGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGA
* * * **
3242498 CTTAAAGATGATAAAGGTGCCAATGTGCTGATACAAGGCTAGCGACATTGGACTTAATGATTTTA
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAA-GATGATA
* **
3242563 AGGGTGCCAATGTGCTGATCCAAGGCCAATGATGTTGGA
65 A-GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGA
* * *
3242602 CTTAAAGATGATAAAGGTGCCAATGGGCTGCTCCAAGGCCAACGACATT
1 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATT
3242651 AGAGTTTAAG
Statistics
Matches: 1298, Mismatches: 340, Indels: 119
0.74 0.19 0.07
Matches are distributed among these distances:
97 51 0.04
98 18 0.01
99 1 0.00
100 3 0.00
101 7 0.01
102 103 0.08
103 482 0.37
104 613 0.47
105 20 0.02
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.24
Consensus pattern (102 bp):
CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAGATGATAA
GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGA
Found at i:3241333 original size:155 final size:155
Alignment explanation
Indices: 3240850--3242650 Score: 1273
Period size: 155 Copynumber: 11.6 Consensus size: 155
3240840 CGACACTAGT
* * * * * * *
3240850 CTTAGAGATGACAAAGGTGCTAATGTGCTGATCCAAGG-CAGCGACATTGGACTTAAAGATGATA
1 CTTAAAGATGATAAGGGTGCCAATGTGCTGATTCAAGGCCAACGACACTGGACTTAAAGATGAT-
* * * * * *
3240914 AAGGTGCCAATAG-GTTCATCTAAGGCTC-ACAACATTGGACTTAAAGATTATAAGGGTGCCAAT
65 AAGGTGCCAAT-GTGCTGATCCAAGGC-CAACGACATTGGACTTAAAGATGATAAAGGTGCCAAT
* *
3240977 GTGCTGATTCAAGGCCAGTGACAATGGA
128 GTGCTGATTCAAGGCCAGCGACATTGGA
* * * * *
3241005 CTTAAAGATGATAAGGGTGCCGATGTACTGGTTCATGGCCAACGACACTGGTCTTAAAGATGCA-
1 CTTAAAGATGATAAGGGTGCCAATGTGCTGATTCAAGGCCAACGACACTGGACTTAAAGATG-AT
* * ** * * * * * *
3241069 AAAGTGTCGGTGTACTGAT-CAAGGCCAATGGCATTGGACTTAAAGACGATAAATGT-CCTAATT
65 AAGGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCC-AATG
* * * * * *
3241132 TGTTGATCCAAGGCAAACTACGTTGGA
129 TGCTGATTCAAGGCCAGCGACATTGGA
* * * * * *
3241159 CTTAAAGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACCCTGGTCTTAGAGATGCTA
1 CTTAAAGATGATAAGGGTGCCAATGTGCTGATTCAAGGCCAACGACACTGGACTTAAAGATGATA
* * * *
3241224 AGGAGCCAATGTGCTGATCCAAGGCCAGCAACATTAGACTTAAAGATGATAAAGGTGCCAATGTG
66 AGGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTG
*
3241289 CTGATACAAGGCCAGCGACATTGGA
131 CTGATTCAAGGCCAGCGACATTGGA
* ** * * * * *
3241314 CTTAATGATTTTAGGGGTGCCAATGTGCTGATCCTAGGCCAATGACATTGGACTTAAAGATGATA
1 CTTAAAGATGATAAGGGTGCCAATGTGCTGATTCAAGGCCAACGACACTGGACTTAAAGATGATA
* * * * * * * *
3241379 TAGGTGCCAATGGGCTGCTCCAAGGCCAACGACATTGGACTTTAAGGTGGTGAGGGTGCAAAT-T
66 -AGGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGT
* * * * * * *
3241443 AGCTAATTTATGGCTAGCGACACTAGT
130 -GCTGATTCAAGGCCAGCGACATTGGA
* * * * * * * * *
3241470 CTTAAAGATGACAAAGGTGCTAATGTGTTGATCCAAGGCCAACGATAGC-GGAATTAAAGGTAAT
1 CTTAAAGATGATAAGGGTGCCAATGTGCTGATTCAAGGCCAACGACA-CTGGACTTAAAGATGAT
* * * * * * * *
3241534 AAAG-GCACTAATATGTTGATCTAAGGCAAACGACATTGGACTTAAAAATTG-CAAACGTGCCAA
65 AAGGTGC-C-AATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGA-TGATAAAGGTGCCAA
*
3241597 TGTGCTAATTCAAGGCC-GAC-ACATTGGA
127 TGTGCTGATTCAAGGCCAG-CGACATTGGA
* * * * * * * *
3241625 CATAAAGATGATAAGGGCGCCAATATGTTGATTCAAGGCTAACGACACTGGTCTTAGAGAGGCA-
1 CTTAAAGATGATAAGGGTGCCAATGTGCTGATTCAAGGCCAACGACACTGGACTTAAAGATG-AT
* * * * *
3241689 AAAGTGCCAATGTGCTGATCCAAGGCCAA-GAACATTGGAGTTTAAGATGATAATGGTGCCAATA
65 AAGGTGCCAATGTGCTGATCCAAGGCCAACG-ACATTGGACTTAAAGATGATAAAGGTGCCAATG
* *
3241753 TGCTGATTAAAGGCCAACGACATTGGA
129 TGCTGATTCAAGGCCAGCGACATTGGA
* * * * * * * * * * *
3241780 CATAAGGATGATAAGGGTGCAAATTTGCTGATTCATGGCCAGCGACACTAGTCTTAGAGAAGAAG
1 CTTAAAGATGATAAGGGTGCCAATGTGCTGATTCAAGGCCAACGACACTGGACTTAAAGATG-AT
* * * * ** * *
3241845 AAGGTGACAATGTGTTGATCCAAGCCCAACGACAATGGACTTAAAGATGATAAAGGCACCGATAT
65 AAGGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGT
* * * * *
3241910 GCT-AATCTAAGGCTAACGATAATGGA
130 GCTGATTC-AAGGCCAGCGACATTGGA
** * * * * * *
3241936 CTTAGGGATTATAAGGGTGCCAATGTGATAATCCAAGGCCAACGACAATGGACATAAAGA-GATA
1 CTTAAAGATGATAAGGGTGCCAATGTGCTGATTCAAGGCCAACGACACTGGACTTAAAGATGATA
* * * * ** * *
3242000 GGGGTGCAAATCTGCTGATTCATTG-C--C-AC--TGGTCTTAAAGATGACAAAGGTGCCAATGT
66 -AGGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGT
* * *
3242059 GTTGATCCAAGGCCAGTGACATTGGA
130 GCTGATTCAAGGCCAGCGACATTGGA
* * * * * * * ** *
3242085 CTTAAAGATGATAAAGTTGGCAATAG-GTTCA-TCTAAGGCTAACAACGTTGGACTTAAAGATTA
1 CTTAAAGATGATAAGGGTGCCAAT-GTGCTGATTC-AAGGCCAACGACACTGGACTTAAAGATGA
* * ** * * *
3242148 TAAGGGTGCCAATGTGCTAATTCAAGGCCAGTGACATTGGACTTAAGGATGATAAGGGTGCCGAT
64 TAA-GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAAT
* ** * * *
3242213 GTGCTGAGTCTTGGCCAACGACACTGGT
128 GTGCTGATTCAAGGCCAGCGACATTGGA
* * ** * * * * *
3242241 TTTAAAGATGCA-AA-GGTGTCGGTGTGTTGA-TCAAAGGCCAATGACATTGGACTTTAAGACGA
1 CTTAAAGATG-ATAAGGGTGCCAATGTGCTGATTC-AAGGCCAACGACACTGGACTTAAAGATGA
* * * * * * * * *
3242303 TAAATGTGCTAATTTGCTGATCCAAGGCAAACTAC-TTAGACTTAATGATGATAAGGGTGCCAAC
64 T-AAGGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAAT
* *
3242367 GTGCTAATTCAAGGCCAGCAACATTGGA
128 GTGCTGATTCAAGGCCAGCGACATTGGA
* * * * * * * *
3242395 CTTCATGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTAGTCTTAGAGATGCTA
1 CTTAAAGATGATAAGGGTGCCAATGTGCTGATTCAAGGCCAACGACACTGGACTTAAAGATGATA
* * * *
3242460 AGGTGCTAATGTACTGATCCAAAGCCAACAACATTGGACTTAAAGATGATAAAGGTGCCAATGTG
66 AGGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTG
* *
3242525 CTGATACAAGGCTAGCGACATTGGA
131 CTGATTCAAGGCCAGCGACATTGGA
* ** * * ***
3242550 CTTAATGATTTTAAGGGTGCCAATGTGCTGATCCAAGGCCAATGATGTTGGACTTAAAGATGATA
1 CTTAAAGATGATAAGGGTGCCAATGTGCTGATTCAAGGCCAACGACACTGGACTTAAAGATGAT-
* *
3242615 AAGGTGCCAATGGGCTGCTCCAAGGCCAACGACATT
65 AAGGTGCCAATGTGCTGATCCAAGGCCAACGACATT
3242651 AGAGTTTAAG
Statistics
Matches: 1251, Mismatches: 349, Indels: 91
0.74 0.21 0.05
Matches are distributed among these distances:
148 1 0.00
149 81 0.06
150 24 0.02
151 3 0.00
152 1 0.00
153 7 0.01
154 263 0.21
155 471 0.38
156 394 0.31
157 6 0.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.24
Consensus pattern (155 bp):
CTTAAAGATGATAAGGGTGCCAATGTGCTGATTCAAGGCCAACGACACTGGACTTAAAGATGATA
AGGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTG
CTGATTCAAGGCCAGCGACATTGGA
Found at i:3241826 original size:362 final size:355
Alignment explanation
Indices: 3241330--3242183 Score: 910
Period size: 362 Copynumber: 2.4 Consensus size: 355
3241320 GATTTTAGGG
* *
3241330 GTGCCAATGTGCTGATCCTAGGCCAATGACATTGGACTTAAAGATGAT-ATAGGTGCCAATGGGC
1 GTGCCAATGTGCTGATCCAAGGCCAA-GACATTGGACTTAAAGATGATAAT-GGTGCCAATAGGC
* * * * * * *
3241394 TGCTCCAAGGCCAACGACATTGGACTTTAAGG-TGGTGAGGGTGCAAATTAGCTAATTTATGGCT
64 TGAT-TAAGGCCAACGACATTGGAC-TTAAGGATGATAAGGGTGCAAATTTGCTAATTCATGGCC
* * * *
3241458 AGCGACACTAGTCTTAAAGATGACA-AAGGTG-CTAATGTGTTGATCCAAGGCCAACGATAGCGG
127 AGCGACACTAGTCTTAAAGAAGA-AGAAGGTGAC-AATGTGTTGATCCAAGCCCAACGACAACGG
* * * * * *
3241521 AATTAAAGGTAATAAAGGCACTAATATGTTGATCTAAGGCAAACGACATTGGACTTAAAAATTGC
190 AATTAAAGATAATAAAGGCACCAATATGCTAATCTAAGGCAAACGACAATGGACTTAAAAATTAC
* * * * *
3241586 AAACGTGCCAATGTGCTAATTCAAGGCCGAC-ACATTGGACATAAAGATGATAAGGGCGCCAATA
255 AAACGTGCCAATGTGATAATCCAAGGCCAACGACAATGGACATAAAGA-GATAAGGGCGCAAATA
* * *
3241650 TGTTGATTCAAGGCTAACGACACTGGTCTTAGAGA-GGCAAAA
319 TGCTGATTC-A---T--CGACACTGGTCTTAAAGATGACAAAA
* * *
3241692 GTGCCAATGTGCTGATCCAAGGCCAAGAACATTGGAGTTTAAGATGATAATGGTGCCAATATGCT
1 GTGCCAATGTGCTGATCCAAGGCCAAG-ACATTGGACTTAAAGATGATAATGGTGCCAATAGGCT
* *
3241757 GATTAAAGGCCAACGACATTGGACATAAGGATGATAAGGGTGCAAATTTGCTGATTCATGGCCAG
65 GATT-AAGGCCAACGACATTGGACTTAAGGATGATAAGGGTGCAAATTTGCTAATTCATGGCCAG
* * *
3241822 CGACACTAGTCTTAGAGAAGAAGAAGGTGACAATGTGTTGATCCAAGCCCAACGACAATGGACTT
129 CGACACTAGTCTTAAAGAAGAAGAAGGTGACAATGTGTTGATCCAAGCCCAACGACAACGGAATT
* * * * *** * **
3241887 AAAGATGATAAAGGCACCGATATGCTAATCTAAGGCTAACGATAATGGACTTAGGGATTATAAGG
194 AAAGATAATAAAGGCACCAATATGCTAATCTAAGGCAAACGACAATGGACTTAAAAATTACAAAC
* * *
3241952 GTGCCAATGTGATAATCCAAGGCCAACGACAATGGACATAAAGAGATAGGGGTGCAAATCTGCTG
259 GTGCCAATGTGATAATCCAAGGCCAACGACAATGGACATAAAGAGATAAGGGCGCAAATATGCTG
* * *
3242017 ATTCATTGCCACTGGTCTTAAAGATGACAAAG
324 ATTCATCGACACTGGTCTTAAAGATGACAAAA
* * * * * *
3242049 GTGCCAATGTGTTGATCCAAGGCCAGTGACATTGGACTTAAAGATGATAAAGTTGGCAATAGGTT
1 GTGCCAATGTGCTGATCCAAGGCCA-AGACATTGGACTTAAAGATGATAATGGTGCCAATAGGCT
* * * * * * * * *
3242114 CATCTAAGGCTAACAACGTTGGACTTAAAGATTATAAGGGTGCCAATGTGCTAATTCAAGGCCAG
65 GAT-TAAGGCCAACGACATTGGACTTAAGGATGATAAGGGTGCAAATTTGCTAATTCATGGCCAG
*
3242179 TGACA
129 CGACA
3242184 TTGGACTTAA
Statistics
Matches: 410, Mismatches: 72, Indels: 25
0.81 0.14 0.05
Matches are distributed among these distances:
356 15 0.04
357 115 0.28
358 3 0.01
361 8 0.02
362 251 0.61
363 18 0.04
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (355 bp):
GTGCCAATGTGCTGATCCAAGGCCAAGACATTGGACTTAAAGATGATAATGGTGCCAATAGGCTG
ATTAAGGCCAACGACATTGGACTTAAGGATGATAAGGGTGCAAATTTGCTAATTCATGGCCAGCG
ACACTAGTCTTAAAGAAGAAGAAGGTGACAATGTGTTGATCCAAGCCCAACGACAACGGAATTAA
AGATAATAAAGGCACCAATATGCTAATCTAAGGCAAACGACAATGGACTTAAAAATTACAAACGT
GCCAATGTGATAATCCAAGGCCAACGACAATGGACATAAAGAGATAAGGGCGCAAATATGCTGAT
TCATCGACACTGGTCTTAAAGATGACAAAA
Found at i:3243674 original size:103 final size:102
Alignment explanation
Indices: 3243520--3243708 Score: 227
Period size: 103 Copynumber: 1.8 Consensus size: 102
3243510 TAAAGATTGC
* *
3243520 AAAGGTGCCAATGTGCTAATTCAAGGCCGGCACATTGGACATAAAAATGATAGGGGCACCAATAT
1 AAAGGTGCCAATGTGCTAATCCAAGGCCGGCACATTGGACATAAAAATGATAAGGGCACCAATAT
*
3243585 GCTGATTC-ATGGCCAACGACACTGGTCTTAGAGAGGA
66 GCTGA-TCAAAGGCCAACGACACTGGTCTTAGAGAGGA
* * * * ** * * * **
3243622 AAAGGTGCTAATGTGCTGATCCAAGGCTGGGGACATTGGAGTTCAAGATGATAATGGTGCCAATA
1 AAAGGTGCCAATGTGCTAATCCAAGGC-CGGCACATTGGACATAAAAATGATAAGGGCACCAATA
3243687 TGCTGATCAAAGGCCAACGACA
65 TGCTGATCAAAGGCCAACGACA
3243709 ATGGACATAA
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
102 26 0.37
103 45 0.63
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.21
Consensus pattern (102 bp):
AAAGGTGCCAATGTGCTAATCCAAGGCCGGCACATTGGACATAAAAATGATAAGGGCACCAATAT
GCTGATCAAAGGCCAACGACACTGGTCTTAGAGAGGA
Found at i:3243826 original size:154 final size:154
Alignment explanation
Indices: 3243584--3243909 Score: 402
Period size: 154 Copynumber: 2.1 Consensus size: 154
3243574 GGCACCAATA
* * *
3243584 TGCTGATTCATGGCCAACGACACTGGTCTTAGAGAGGAAAAGGTGCTAATGTGCTGATCCAAGGC
1 TGCTAATTCATGGCCAACGACACTAGTCTTAGAGAGGAAAAGGTGC-AATGTGCTGATCAAAGGC
** * * * * **
3243649 TGGGGACATTGGAGTTCAAGATGATAATGGTGCCAATATGCTGATCAAAGGCCAACGACAATGGA
65 CAGGGACAATGGACTTAAAGATGATAAAGGCACCAATATGCTGATCAAAGGCCAACGACAATGGA
*
3243714 CATAAAGATAATAAGGGTGCAAATT
130 CATAAAGATAATAAGGGTGCAAATG
* * * *
3243739 TGCTAATTCATGGCCAGCGACACTAGTCTTAGAGATGAAGAAGGTG-ACTGTGTTGATCAAAGGC
1 TGCTAATTCATGGCCAACGACACTAGTCTTAGAGAGGAA-AAGGTGCAATGTGCTGATCAAAGGC
* *
3243803 CAGGGACAATGGACTTAAAGATGATAAAGGCACCAATATGCTGATCTAAGGCTAACGACAATGGA
65 CAGGGACAATGGACTTAAAGATGATAAAGGCACCAATATGCTGATCAAAGGCCAACGACAATGGA
* ** * *
3243868 CTTAGGGATTATAAGGGTGCCAATG
130 CATAAAGATAATAAGGGTGCAAATG
* *
3243893 TGCTAATCCAAGGCCAA
1 TGCTAATTCATGGCCAA
3243910 TGACTTTGGA
Statistics
Matches: 144, Mismatches: 26, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
154 103 0.72
155 35 0.24
156 6 0.04
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (154 bp):
TGCTAATTCATGGCCAACGACACTAGTCTTAGAGAGGAAAAGGTGCAATGTGCTGATCAAAGGCC
AGGGACAATGGACTTAAAGATGATAAAGGCACCAATATGCTGATCAAAGGCCAACGACAATGGAC
ATAAAGATAATAAGGGTGCAAATG
Found at i:3244153 original size:202 final size:206
Alignment explanation
Indices: 3243577--3244314 Score: 597
Period size: 202 Copynumber: 3.6 Consensus size: 206
3243567 TGATAGGGGC
* * * * * * * * * * *
3243577 ACCAATATGCTGATTCATGGCCAACGACACTGGTCTTAGAGAGGA-AAAGGTGCTAATGTGCTGA
1 ACCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAATGGTGCCAATATGCTGA
* **** * * * * * * *
3243641 TCCAAGGCTGGGGACATTGGAGTTCAAGATGATAATGGTGCCAATATGCTGATCAAAGGCCAACG
66 TCTAAGGCTAACAACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATCCAAGGCCAATG
* * * * *
3243706 ACAATGGACATAAAGATAATAAGG-GTGCAAATTTGCTAATTCATGGCCAGCGACACTAG-TCTT
131 ACATTGGACATAAAGATGAT-AGGAGAGCAAATCTGCTGATTCATGGCCA-CGACACT-GCTCTT
* * *
3243769 AGAGATGAAGAAGGT
193 AAAGAAGCA-AAGGT
* * * * * **
3243784 GA-C--TGTGTTGATCAAAGGCCAGGGACAATGGACTTAAAGATGATAAAGGCACCAATATGCTG
1 -ACCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAATGGTGCCAATATGCTG
* * ** *
3243846 ATCTAAGGCTAACGACAATGGACTTAGGGATTATAAGGGTGCCAATGTGCTAATCCAAGGCCAAT
65 ATCTAAGGCTAACAACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATCCAAGGCCAAT
* * * * *
3243911 GACTTTGGACATAAAGATTATAGGAGAGCAAATCTGCTGATTCATTG-C-C-AC-TTG-TCTTAG
130 GACATTGGACATAAAGATGATAGGAGAGCAAATCTGCTGATTCATGGCCACGACACTGCTCTTAA
3243971 AGAAGACAAAGGT
195 AGAAG-CAAAGGT
* * * *
3243984 GCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAATGGTGCCAATAGGTTCA
1 ACCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAATGGTGCCAATATGCTGA
* * * *
3244049 TCTAGGGCTAACAACATTGGAATTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAGTG
66 TCTAAGGCTAACAACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATCCAAGGCCAATG
* * * * ** *
3244114 TCATTGGACTTAAAGATGATAATG-GTGCTGATGTGCTGATTCATGGCCAACGACACTGCTCTTA
131 ACATTGGACATAAAGATGAT-AGGAGAGCAAATCTGCTGATTCATGGCC-ACGACACTGCTCTTA
*
3244178 AAGATGCAAAGGT
194 AAGAAGCAAAGGT
** * ** * * * *
3244191 ACCGGTGTGCTTATCCAAGGCCAATGAAATTGGACTTAAAGACGATAAAT-GTGCTAATTTGCTG
1 ACCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGAT-AATGGTGCCAATATGCTG
* *
3244255 ATCCAAGGC-AAGCTACATTGGACTTAAAGATGT-TAAGGGTGCCAATGTGCTGATCCAAGG
65 ATCTAAGGCTAA-CAACATTGGACTTAAAGAT-TATAAGGGTGCCAATGTGCTGATCCAAGG
3244315 TAAACAATGT
Statistics
Matches: 423, Mismatches: 91, Indels: 33
0.77 0.17 0.06
Matches are distributed among these distances:
200 17 0.04
201 2 0.00
202 141 0.33
203 4 0.01
205 34 0.08
206 104 0.25
207 107 0.25
208 14 0.03
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.25
Consensus pattern (206 bp):
ACCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAATGGTGCCAATATGCTGA
TCTAAGGCTAACAACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATCCAAGGCCAATG
ACATTGGACATAAAGATGATAGGAGAGCAAATCTGCTGATTCATGGCCACGACACTGCTCTTAAA
GAAGCAAAGGT
Found at i:3244915 original size:52 final size:52
Alignment explanation
Indices: 3243435--3244915 Score: 744
Period size: 52 Copynumber: 28.7 Consensus size: 52
3243425 TTCATCATGT
* * * * * * *
3243435 TCCAAGGCCAACGACAGTGGAATTAAAGATAATAAAGGCT-CCAATATGTTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGG-TGCCAATGTGCTGA
* ** * * * * *
3243487 TCTAAGGCTAAAGTCGTTTGACTTAAAGATTG-CAAAGGTGCCAATGTGCTAA
1 TCCAAGGCTAGCGACATTGGACTTAAAGA-TGATAAAGGTGCCAATGTGCTGA
* ** * * ** ** *
3243539 TTCAAGGCCGGC-ACATTGGACATAAAAATGATAGGGGCACCAATATGCTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * * * * * * *
3243590 TTCATGGCCAACGACACTGGTCTTAGAGAGGA-AAAGGTGCTAATGTGCTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * * * *
3243641 TCCAAGGCTGGGGACATTGGAGTTCAAGATGATAATGGTGCCAATATGCTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * * * * * * * *
3243693 TCAAAGGCCAACGACAATGGACATAAAGATAATAAGGGTGCAAATTTGCTAA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * * * * * * *
3243745 TTCATGGCCAGCGACACTAGTCTTAGAGATGA-AGAAGGTG--ACTGTGTTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATA-AAGGTGCCAATGTGCTGA
* * * * ** *
3243795 TCAAAGGCCAGGGACAATGGACTTAAAGATGATAAAGGCACCAATATGCTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * ** * * *
3243847 TCTAAGGCTAACGACAATGGACTTAGGGATTATAAGGGTGCCAATGTGCTAA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* ** * * * * * * *
3243899 TCCAAGGCCAATGACTTTGGACATAAAGATTAT-AGGAGAGCAAATCTGCTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAG-GTGCCAATGTGCTGA
* * * * * * *
3243951 TTC-A---TTGCCAC-TT-GTCTTAGAGAAGACAAAGGTGCCAATGTGCTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * *
3243997 TCCAAGGCCAGCGACATTGGACTTAAAGATGATAATGGTGCCAATAG-GTTCA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAAT-GTGCTGA
* * * * * * *
3244049 TCTAGGGCTAACAACATTGGAATTAAAGATTATAAGGGTGCCAATGTGCTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * * * **
3244101 TTCAAGGCCAGTGTCATTGGACTTAAAGATGATAATGGTGCTGATGTGCTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * * * ** * * ** *
3244153 TTCATGGCCAACGACACTGCTCTTAAAGATG-CAAAGGTACCGGTGTGCTTA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* ** * * * * *
3244204 TCCAAGGCCAATGAAATTGGACTTAAAGACGATAAATGTGCTAATTTGCTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * *
3244256 TCCAAGGCAAGCTACATTGGACTTAAAGATGTTAAGGGTGCCAATGTGCTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * ** * * * * * *
3244308 TCCAAGG-TAAACAATGTTTGAACTT-AAGAATGACAATGGTGCGAATATGCTAA
1 TCCAAGGCT-AGCGA-CATTGGACTTAAAG-ATGATAAAGGTGCCAATGTGCTGA
* * * * ** *
3244361 TCTAGGGCTAGCGAAATTGGACTTAAAGATGATAAAAGCACCAATAT-CTTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGC-TGA
* * * * * *
3244413 TCCAAGGCTAGTGACGTTGGACTTCAAGATTAGAAAGGTGCCAATGTACTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
*
3244465 TCCAAGGCCT-GCGACATTGGACTTAAAGACT-ATAAAGGTGCCAATGTGTTGA
1 TCCAAGG-CTAGCGACATTGGACTTAAAGA-TGATAAAGGTGCCAATGTGCTGA
* * * * * * *
3244517 CCCAAGGCCAACGTCATTGGACTTAAAGATGATAAAGGTACCAGTGTGTTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* ** * * * * * ** ** ** *
3244569 TCCAAGGCAAATGACATTAGAATGAAAGCTGACAAAGGCACCGTTCCGATGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * * ** * *
3244621 TCTAAGGCTAGCAACATTTGACTTAAAGATTATAGGGGTGCTAATGTACTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * * * * **
3244673 TCCAAGGCTACCGACGTTAGACTTAAAGAAT-ATAAGGGTTCCAATGCACTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAG-ATGATAAAGGTGCCAATGTGCTGA
* * * * * *
3244725 TTCAAGGCCAGCAACATTAGAGTTAAAGATGATAAAGGTGCCATTGTGCTGAA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTG-A
* * * * * * * *
3244778 T-AAAGGCCAACGACACTGGTCTTAGAGATGCT-AAGATGCCAATGTGCTGA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* *
3244828 TCCAAGG-TCAGCAACATTGGACTTAAAGATGATAAAGGAGCCAATGTGCTGA
1 TCCAAGGCT-AGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
* * *
3244880 TACAAGGCTAGCAACATTGGACTTAAAGATTATAAA
1 TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAA
3244916 TGATGAAAAC
Statistics
Matches: 1044, Mismatches: 347, Indels: 76
0.71 0.24 0.05
Matches are distributed among these distances:
46 22 0.02
47 5 0.00
48 2 0.00
50 42 0.04
51 155 0.15
52 770 0.74
53 47 0.05
54 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (52 bp):
TCCAAGGCTAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGA
Found at i:3246558 original size:12 final size:11
Alignment explanation
Indices: 3246536--3246611 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3246526 AGAGAAAGAA
*
3246536 GAGAGAGGAGG
1 GAGATAGGAGG
3246547 GATGATAGGAGG
1 GA-GATAGGAGG
*
3246559 AGAGACAGGA--
1 -GAGATAGGAGG
*
3246569 GAGATAGTA--
1 GAGATAGGAGG
3246578 GAGATAGGAGG
1 GAGATAGGAGG
3246589 GATGATAGGAGG
1 GA-GATAGGAGG
*
3246601 AGAGACAGGAG
1 -GAGATAGGAG
3246612 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:3246568 original size:24 final size:24
Alignment explanation
Indices: 3246535--3246620 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3246525 AAGAGAAAGA
*
3246535 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
3246559 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
3246577 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
3246601 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
3246621 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:3246587 original size:42 final size:42
Alignment explanation
Indices: 3246526--3246644 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3246516 TAGCCCTCAA
* *
3246526 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
3246568 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
3246610 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
3246645 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:3251805 original size:52 final size:52
Alignment explanation
Indices: 3251621--3258476 Score: 2063
Period size: 52 Copynumber: 132.0 Consensus size: 52
3251611 GTTGTCATCA
* * * * * *
3251621 ATAAAGGTGCCAATGTATTGGTCCAACGCCAGTGTCATTGGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * ** * *
3251673 ATAAAGGTACCAGTGTGCTGATCCCAGGCCAATGACATTAGAATTAAAGCA-G
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAG-ATG
* * * * * *
3251725 ACAAAGGTGCCACTCCG-A-T-AACCTAAGGCTAGCGACATTGGACTTAAAGATT
1 ATAAGGGTGCCAAT--GTACTGATCC-AAGGCCAGCGACATTGGACTTAAAGATG
* * * *
3251777 ATAGGGGTGGCC-ATGTACTGATCCAAGGCCAGCGACGTTAGACTTAAAGATT
1 ATAAGGGT-GCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * *
3251829 ATAAGGGTTCCAATGCACTGATTCAAGGCCAAC-AGCATTGGACTTAAAAATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGA-CATTGGACTTAAAGATG
* * * * * * * * * *
3251881 ATAAAGGTCCCAATGTGCTGATTCATGGCTAACGAGATTGGTCTTAGAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * *
3251933 CTAA-GGTGCCAGTATGCTGATCCAAGGCCAGCAACATTGGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * ** * * *
3251984 ATAAAGGG-GGCAATGTGCTGATATAAGGCCAGCGACACTGGACTTAATGATT
1 AT-AAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
3252036 TTAAGGATGCCAATGTGCTGATCCAAGGCCCA-TGACATTGGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGG-CCAGCGACATTGGACTTAAAGATG
** ** * * * *
3252088 ATAAATGTGCCAATGGGCTGCTCCAAGGCCAACGACATTGGACTTTAAGGTG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * * * * *
3252140 GTGAGGGTGCAAAT-TAGCTAATTCATGGCTAGCGACACTAGTCTTAGAGATG
1 ATAAGGGTGCCAATGTA-CTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * ** * * * *
3252192 ACAAAGGTGCCAATGTTTTGATCCAAGGCCAACGACAGTGGAATTAAAGATA
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * ** * * ** * *
3252244 ATAAAGGCT-CCAATATGTTGATCTAAGGCTAAAGTCGTTGGACTTAAAGATTG
1 AT-AAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGA-TG
* * * * * *
3252297 CA-AA-GGTGCCAATGTGCTAATTCAAGGCCGGC-ACATTGGACATAAAAATG
1 -ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
** * * * * * * * *
3252347 ATAAGGGCACCAATATGCTGATTCATGGCCAACGACACTGGTCTTAGAGA-G
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * ** * * *
3252398 CA-AAAGGTGCTAATGTGCTGATCCAAGGCTGGGGACATTGGAGTTCAAGATG
1 -ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * *
3252450 ATAATGGTGCCAATATGCTGATCAAAGGCCAACGACAATGGACATAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * * * *
3252502 ATAAGGGTGCAAATTTGCTAATTCATGGCCAGCGACACTAGTCTTAGAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * ** *
3252554 A-AGAAGGCGACAATGTGTTGATCCAAGGCCAGCGACAATGGACTTAAAGATG
1 ATA-AGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* ** * * * * * * * * * ** *
3252606 ATAAAGGCACCAATATGCTAATCTAAGGCTAACAACAATGGAATTAGGGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * *
3252658 ATAAGGGTGCCAATGTCCTAATCCAGGGCCAACGACGTTGGACATAAAGACG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * ** * * * *
3252710 ATAGGGGTGCAAATCTGCTGATTCATTG-C--C-AC--TAGTCTTAGACATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
3252756 AAAAAGGTGCCAATGTGCTGATCCAA-GCCTAGTGACATTGGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCC-AGCGACATTGGACTTAAAGATG
* * * * * *
3252808 ATAAAGGTGCCGAATAGGT--TCA-CCTAAGGCTAACAACATTGGACTTAAAGATT
1 ATAAGGGTGCC-AAT--GTACTGATCC-AAGGCCAGCGACATTGGACTTAAAGATG
* * * ** * * *
3252861 ATAAAGGTGCCAAAGTGCTGATTTAAGGCTAGTGACATTAGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
** * * * * * * * ** *
3252913 ATAAGGGTGCTGATGTGCTGATTCATGGCTAACGACACTAGTTTTAAAGAAG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
*** * ** * * * *
3252965 CA-AA-GGTGCTGGTGTGCTGATCTGAGGCCAACGACGTTGGACTTAAACACG
1 -ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * *
3253016 ATTAA-TGTGCTAATTTGCTTATCCAAGG-TATACTACATTGGACTTAAAGATG
1 A-TAAGGGTGCCAATGTACTGATCCAAGGCCA-GCGACATTGGACTTAAAGATG
* * * * * * *
3253068 ATAAGGGTGCCAACGTGCTGATTCAAGGCCAACAACTTTGGACTAAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * * *
3253120 ATAAAGGTGCCAACGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* ** * * * * * *
3253172 CTAA-GGTGCCTCTGTGCTGATCTAAGGCCAGCAACATTAGACTTAAAAACG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * *
3253223 ACAAAGGTGCCAATATGCTGATACAAGACTAGCGACATTGGACTTAAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * ** * * *
3253275 ATAAAGGTGCTAATGTGTTGATCCAAGGCCAGGGTCATTGGACTTAAAGATA
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * ** * * *
3253327 ATAAAGGTTCTAGTGTGCTGATCCCAGGCCAATGACATTAGAATTAAAGCTG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * ** *
3253379 ACAAAGGCGCTACTCCG-A-TGATCTAAGGCTTGCGACATTGGACTTAAAGATT
1 ATAAGGGTGCCAAT--GTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * *
3253431 AT-AGGGTGGCAATGGACTGATCCAAGGCCAACGACGTTAGACTTAAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
3253482 ATAAGGGTTCCAATGCACTGATTCAAGGCCAGCAACATTGGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
** * * * * * * ** * *
3253534 ATAAATGTGCCAATGTGCTGATTCATGGGCAACGACAGTGGTTTTAGAGTTG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * ** *
3253586 CTAA-GGTGCCAACGTGCTGATCCAAGGCCAGAAACATTGGACTTAAACATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * *
3253637 ATAAAGGTGCC-A-GTAGGTTCATCTAAGGCTAACAACATTGGACTTAAAGATT
1 ATAAGGGTGCCAATGTA--CTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * ** *
3253689 AT-AGCGGTGCCAATGTGCTGCTTCAAGGCCAGTGACATTTAACTTAAAAATG
1 ATAAG-GGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
** * ** ** * *
3253741 ATAAGGGTGCTGATGTGCTGATTTAAGGCCAATGACACTGGTCTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
** * * * * * * * *
3253793 CA-AA-GGTGCCGGTGTGCTAATCCAAAGCCAACGATAATAGA--TAAAGACG
1 -ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
*** * * * * * *
3253842 ATAAATTTGCTAATTTGCTGATCCAAGGCAAACTACATTGGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* ** *
3253894 ATAAGGGTGCCAATGTGCTGATTTAAGGCCAGCAACATTGGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * ** * *
3253946 ATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACAGTGGTTTTAGAGTTG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
3253998 CTAA-GGTGTCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAACATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * *
3254049 ATAAAGGTGCCAATAGGT--TCATCTAAGGCTAACAACATTGGACTTAAAGATT
1 ATAAGGGTGCCAAT--GTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * *
3254101 AT-AGCGGTGCCAATGTGCTGCTTCAAGGCCAGTGACATTGAACTTAAAAATG
1 ATAAG-GGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * ** ** * *
3254153 ATAAGGGTGCCGATGTGCTGATTTAAGGCCAATGACACTGGTCTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
** * * * *
3254205 CA-AA-GGTGCCGGTGTGCTGATCCAAAGCCAACGACATTGGACTTAAAGACG
1 -ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
** * * * * * *
3254256 ATAAATGTGCTAATTTGCTGATCCAAGGCAAACTACATTGGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* ** * * *
3254308 ATAAGGGTGCCAATGTGCTGATTTAAGGCCAGCAAAATTGGAATTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * * * **
3254360 ATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTAGTCTGAGGGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * *
3254412 CTAA-GGTGCCAATGTGCTGATCCAAGGCCAGCAACATCGTACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
3254463 ATAAAGGTGCCAAAGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* ** * * * *
3254515 ATAAAGGTGCCAATGTGTTGACCCAAGGCCAGTGTCATTGGACTTCAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * ** ** ** * * *
3254567 ATAAAGGTACTAGTGTGTTGATCCCTGGCCAATGACATTAGAATTAAAGCTG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* ** ** * * * * * * * *
3254619 ACAATAGCACCACTCTAATGATCTAAGGCTAGTGACATTAGACTTAAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * ** * * * * *
3254671 ATAGGGGTGGCAATGTACTGATCCAAGGGTAGCGACGTTAGCCTTCAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * *
3254723 ATAGGGGTTCCAATGCACTGATTCAAGGCCAGCAACACTGGATTTAAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * * * **
3254775 ATAATGGAGCAAATGTGCCGAAT-CATGGCCAACGACACTGGTCTTCGAGATG
1 ATAAGGGTGCCAATGTACTG-ATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
3254827 CTAA-GGTGCCAATGTGCTGATCCCAGGCCAGCGACATTGGACTTAAATATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * ** ** * *
3254878 ATAAAGGTGCCAATAGGT--TCATCTAAGGTTAAAGACATTGGACTTAAATATT
1 ATAAGGGTGCCAAT--GTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * *
3254930 ATAATGGTGCCAATGTGCTGATTCAAGGCCAGTGACATTGGACTTGAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * **
3254982 ATAAGGGTGCCGATGTGCTGATTCATGGTCAACGACACTGGTTTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
** * * * * *
3255034 CA-AA-GGTGCCGGTGTGCTGACCCAAGGCCAACGACATTTGACTTAAAGACG
1 -ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
** * * * * * * * *
3255085 ATAAATGTGCTAATTTGCTGATCTAAGGCAAACTACATTTGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * *
3255137 ATAAGGGTGCCAACGTGCTGATTCAATGCCAGCAACATTAGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * * *
3255189 ATAAAGGTGTCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
3255241 CT-AGGGTGCCAATGTGCTGATCCAATGCCAGC-AGCATTGAACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGA-CATTGGACTTAAAGATG
** * * *
3255292 ATAAACGTGCCAATGTGCTGATACTTATAAAGG--AGC-A-AATGTG--TT---GAT-
1 ATAAGGGTGCCAATGTACTGAT-C----CAAGGCCAGCGACATTG-GACTTAAAGATG
** * * * * * ** * *** * * *
3255340 CCAAGGCCAGCGACATTGGACT--T-TAAGG-TGGTGAGGGTGCAAATTAGCCA-AT-
1 ATAAGG---GTGCCAATGTACTGATCCAAGGCCAGCGACATTG-GACTTA--AAGATG
* * ** * * * * *
3255392 -TCATGGCTAGCCACACTAGTTTTAGAGATGACAAAGG--TGCCA-ATGTGTTGA-TCCAAGGCC
1 AT-AAGGGT-GCCA-A-T-G---TACTGAT--CCAAGGCCAGCGACAT-TG--GACT-TAAAG--
*
3255452 AACG
50 -ATG
* ** * * * * * *
3255456 AT-A--GTG-GAAT-TAAAGAAAAT-AAAGG--TGCTA-ATATGCTGA-TCTAAGGCTA
1 ATAAGGGTGCCAATGTACTG---ATCCAAGGCCAGCGACAT-TG--GACT-TAAAGATG
* *** * * *** * * * * * * **
3255505 ACAACATTG-GACT-TAAAAATTGCAAAGG--TGCCA-ATGTGCTAATTCAAGGCCGG
1 ATAAGGGTGCCAATGTACTGA-T-CCAAGGCCAGCGACAT-TG-GACTT-AAAG-ATG
* * * * * * * * *
3255558 CACATTGGACATG-AAGATGATA-TGGGTGCCAATATGCTGATTCATG-GCCAATGACACTGGTC
1 -ATA-AGG--GTGCCA-ATG-TACT-GAT-CC-A-A-G--G--CCA-GCGACATTG-GACT--T-
** *
3255620 TTAGAGAG
46 AAAGA-TG
* * * * * * * * *
3255628 ACAAAGGTGCCAATGTGCTAATCCAAGGCTAGGGACATTGGAGTTCATGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* ** * * ** *** *
3255680 ATAATGGTGCCAATACACTAATCAAAGGAAAAAAAACATTGGACATAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGG-CCAGCGACATTGGACTTAAAGATG
* * * * ** * * * *
3255733 ATAAAGGGTGCAAATTTGCTGATTCGTGGCCAGCGACACTAGTCTTAGAGATG
1 AT-AAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * ** * *
3255786 AAGAAGGG-GACAATGTGTTGATCCAAGGCCAGCGACAATGGACTTTAAGATG
1 -ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* ** * * * * * * ** *
3255838 ATAAAGGCACCAATATGCTGATCTAAGGCTAACGACAATGGACTTAGGGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * ** * *
3255890 ATAAGGGTGCCAATGTGCTAATCCAAGGCCAATGAAATTGGACATAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * ** * *
3255942 ATAGGGGTGCAAATCTGCTGATTCATTG-C--C-AC--TGGTCTTAGAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
3255988 ACAAAGGTGCCAATGTGCTGATCGAAGGCCAGCGACATTGGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * *
3256040 ATAAAGGTGCCAATAGGT--TCATCTAAGGCTAACAACATTGGACTTGAAGATT
1 ATAAGGGTGCCAAT--GTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
3256092 ATAAGGGTGCCAATGTGCTGATTCAAGGCCAGTGACATTGGGCTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * ** *
3256144 ATAA-GGTGCCAATGTGCTGAT-TAATGGCCAACGACACTGGTTTTAAA-AAG
1 ATAAGGGTGCCAATGTACTGATCCAA-GGCCAGCGACATTGGACTTAAAGATG
* * * * * * *
3256194 GTAAAGGTGCCAGTGTGA-TGATCCAAAGCCAACAACATTGGACTTAAAAATG
1 ATAAGGGTGCCAATGT-ACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* ** * * * * *
3256246 AAAAATGTGCTTAATGTGCTGATCCAAGGCAAACGACATTGGACATAAA-ATTG
1 ATAAGGGTGC-CAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGA-TG
* * * *
3256299 ATAAGGGTGCCAATG---TG---C--TG-C-TCGACATTCGACTTAAGGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* **
3256341 ACAAAAGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
** ** * * ** *
3256393 ATAAAAGCACCAATATGCTGATCCAAGGTCC-GCGATGTTGGACTTAAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGG-CCAGCGACATTGGACTTAAAGATG
* *
3256445 ATAAAGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* *** ** ** *
3256497 ATAAAGGCAACAATGTGTTGATCCAAGGCCAATGACATTGGACTTAGAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* ** ** * *
3256549 ATAAAGGTGCCAATGTGTTGATCCAAGGCCAATGCCATTTGACTTAAAGA--
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* ** * * * * * * * *
3256599 CT----CCGCAAATGTGCTAATTCATGGCCAGCGACACTAGTCTTAGAGAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTA-A-AGATG
* * * ** *
3256649 ATAAAGATGGCAATGTGTTGATCGAAGGCCAGCGACATTGGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* ** * ** * ** ** *
3256701 ATAAAGGCACCAATATGTTGATCCAAGGCAAATGACATTGGACTT-GGGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * ** *
3256752 ATAAGGGTTCTAATGTGCTGATTCAAGGCCAGCGATGTTGGACTTACAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* ** * * * * * ** *
3256804 ATAAGGATGCCAATGTGTTGATTCATGGCCAACGACACTAGTTTTAGAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * **
3256856 A-AAAGGTGCCAACGTGCTGATCCAAGGCCAGTGACATTGGACTTAAAGACA
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * *
3256907 ATAAAGTTGCCAATATGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * ** * * * *
3256959 ATGAGGGTGCCAATCTAAGGATTCAAGACCAGTGACATTGGGCTT--A-A-G
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * ** * * * *
3257007 ATAAGGGTGCCAATGTGCTGATTCATGGTTAGCGACACTAGTCTTAGAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
** * * * * * *** *
3257059 GCAATGGTGCCAATATGCTAATCCAAGG-CAGTGACATCAAATTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
3257110 ATAAAGGTATCAATGGTGCCAATGTACTGATCCAAGGCTAGTGACTTTGGACTTAAAGATT
1 AT-AA-G-------GGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
3257171 ATAAGGGTGCCAATTTGCTGATTCAAGACCAGCGACATTGGACTT-AAGAT-
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * ** * * * *
3257221 AT--GGGTGCCAATGTGCTGATTCATA-GTTAGCGACACTAGTCTTAGAGATG
1 ATAAGGGTGCCAATGTACTGATCCA-AGGCCAGCGACATTGGACTTAAAGATG
* * * * * * *
3257271 ACAATGGTGCCAATGTGCTAATCCAAGG-CAGTGGCATCGGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * *
3257322 ATAAAGGTGCCAATGGTGCCAATGCACTGGTCCAATGCTAGCGACATTGGACCTAAAGATT
1 AT-AA---G-----GGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
** * * *
3257383 ATAAAAGTGCCAATGTGCTGATCCAAGGCCAGTGACATTGGACTTGAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * ** * * **
3257435 ATAAAGGTGCCATTATGCTGATGCATGGCCAATGACATTTGACCTAAATTTG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * ** ** * * * * *
3257487 ATAACGGTGCCAATCTGTTGATTTAAGGCTAGTGACATTAGATTTAAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * ** *
3257539 ATACGTGTGCCAATGTGCTGATCCAAGCCCAACGACATTAGACCCAAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * *
3257591 ATAAGGGTGCTAATGTGCTGATTCAAGGCCAGCGAC-TATGGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACAT-TGGACTTAAAGATG
* * * ** * * * * * *
3257643 ATAAGGTTTCCAATGTGCTGATTTATGGCCAACGTCACTGGTCTTAGAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * *
3257695 CA-AA-GGTGCTAATGTGCTAATCCAAGGCTAGTGACATTGGACTTAATGATG
1 -ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * *
3257746 AT-AGAGGTGCCAATGTGCTGATCCAAGGCTAGCGACATTTGACTTAAAGATTG
1 ATAAG-GGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGA-TG
* * * * * *
3257799 -TAAGGGTACAAATCTTCTAATCCAAGGCCAGC-ATCATTGGACTTAAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGA-CATTGGACTTAAAGATG
* * * ** * * * *
3257850 ATGAGGGTTCCAATCTGTTGATTCAAGACCGGCAACATTGGACTT--A-A-G
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * *
3257898 ATAAGGGTGCCAATGTGCTAATTCATGGCTAGCGACACTGGTCTTAGAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * *
3257950 ACAAAGATGCCAATTTGCTAATCCAAGGCCATCGACATTGGACTTAAAGGTG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * *
3258002 ATAAAGGTGCCAATGGTGCCAATGTACTGATCCAAGGCAAACAACATTGGACTTAAAGATT
1 AT-AA---G-----GGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * ** * *
3258063 ATAAAGGTGCCAATGTGCTGATTTAAGGCTAGCGATATTGGACTTAAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * ** * * * *
3258115 ATAAAGGTGCCAATGTGCTGATCTGAGGCTAACGACATTGGACTCAAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* ** * *
3258167 ATAAGGGTGCCAATGTGCTGATTTAAGGCCAGCAACATTGGACTTGAAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * * *
3258219 ATAAAGATGCCATTATGCTGATCCAAGGACAGCGACATTTGACTTAAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * ** * *
3258271 ATAAGGGTGCAAATCTTTTGATCCAAGGCCAGCGTCATTGGACTTAAAGATT
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * ** * * * *
3258323 TTGAGGGTGCCAATCTGTTAATTCAAGACC-GACAACATTGGACTT--A-A-G
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAG-CGACATTGGACTTAAAGATG
* * * * * * * * *
3258371 ATAAGGGTGCCAATGTGCTAATTCATGGCTAGTGACACTGGTCTTAGAGATG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
* * * * * * *
3258423 ACAAAGATGCCAATTTGCTGATCCAAGGCCAACGACATTGGACTTAAAGGTG
1 ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
3258475 AT
1 AT
3258477 GATGAAAACC
Statistics
Matches: 5007, Mismatches: 1521, Indels: 552
0.71 0.21 0.08
Matches are distributed among these distances:
42 27 0.01
43 5 0.00
44 2 0.00
45 4 0.00
46 88 0.02
47 2 0.00
48 141 0.03
49 30 0.01
50 76 0.02
51 761 0.15
52 3443 0.69
53 162 0.03
54 62 0.01
55 8 0.00
56 4 0.00
57 13 0.00
58 3 0.00
59 6 0.00
60 53 0.01
61 86 0.02
62 2 0.00
63 2 0.00
64 3 0.00
65 3 0.00
66 6 0.00
67 1 0.00
68 5 0.00
69 5 0.00
70 4 0.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (52 bp):
ATAAGGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATG
Found at i:3252012 original size:155 final size:154
Alignment explanation
Indices: 3251624--3258476 Score: 2583
Period size: 155 Copynumber: 44.0 Consensus size: 154
3251614 GTCATCAATA
** * * * * * *
3251624 AAGGTGCCAATGTATTGGTCCAACGCCAGTGTCATTGGACTTAAAGATGATAAAGGTACCAGTGT
1 AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGT
** * * * * * ** * **
3251689 GCTGATCCCAGGCCAATGACATTAGAATTAAAGCA-GACAAAGGTGCCACTCCGAT-AACCTAAG
66 GCTGAT-TAAGGCCAACGACATTGGACTTAAAG-ATGATAAAGGTGCCAATGTGCTGATTC-AAG
* * *
3251752 GCTAGCGACATTGGACTTAAAGATTAT
128 GCCAACGACATTGGACTTAAAGATGAT
* * * * * * *
3251779 AGGGGTGGCC-ATGTACTGATCCAAGGCCAGCGACGTTAGACTTAAAGATTATAAGGGTTCCAAT
1 A-AGGT-GCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAAT
** * * *
3251843 GCACTGATTCAAGGCCAAC-AGCATTGGACTTAAAAATGATAAAGGTCCCAATGTGCTGATTCAT
64 GTGCTGATT-AAGGCCAACGA-CATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAA
* * * * *
3251907 GGCTAACGAGATTGGTCTTAGAGATGCT
127 GGCCAACGACATTGGACTTAAAGATGAT
* * * * *
3251935 AAGGTGCCAGTATGCTGATCCAAGGCCAGCAACATTGGACTTAAAGATGATAAAGGGGGCAATGT
1 AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGT
* * * * * *
3252000 GCTGATATAAGGCCAGCGACACTGGACTTAATGAT-TTTAAGGATGCCAATGTGCTGATCCAAGG
66 GCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGG-TGCCAATGTGCTGATTCAAGG
* *
3252064 CCCATGACATTGGACTTAAAGATGAT
129 CCAACGACATTGGACTTAAAGATGAT
* * * * * * * * * *
3252090 AAATGTGCCAATGGGCTGCTCCAAGGCCAACGACATTGGACTTTAAGGTGGTGAGGGTGCAAAT-
1 -AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * * * * * * ** *
3252154 TAGCTAATTCATGGCTAGCGACACTAGTCTTAGAGATGACAAAGGTGCCAATGTTTTGATCCAAG
65 T-GCTGATT-AAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAG
* * *
3252219 GCCAACGACAGTGGAATTAAAGATAAT
128 GCCAACGACATTGGACTTAAAGATGAT
* * * * ** * * *
3252246 AAAGGCT-CCAATATGTTGATCTAAGGCTAAAGTCGTTGGACTTAAAGATTG-CAAAGGTGCCAA
1 -AAGG-TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGA-TGATAAAGGTGCCAA
* ** * * * ** * *
3252309 TGTGCTAATTCAAGGCCGGC-ACATTGGACATAAAAATGATAAGGGCACCAATATGCTGATTCAT
63 TGTGCTGATT-AAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAA
* * * *
3252373 GGCCAACGACACTGGTCTTAGAGA-GCAA
127 GGCCAACGACATTGGACTTAAAGATG-AT
* ** * * * * *
3252401 AAGGTGCTAATGTGCTGATCCAAGGCTGGGGACATTGGAGTTCAAGATGATAATGGTGCCAATAT
1 AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGT
* * * * * * * *
3252466 GCTGATCAAAGGCCAACGACAATGGACATAAAGATGATAAGGGTGCAAATTTGCTAATTCATGGC
66 GCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGC
* * * * * *
3252531 CAGCGACACTAGTCTTAGAGATGAAG
130 CAACGACATTGGACTTAAAGATG-AT
* * * * ** *
3252557 AAGGCGACAATGTGTTGATCCAAGGCCAGCGACAATGGACTTAAAGATGATAAAGGCACCAATAT
1 AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGT
* * * * * ** * * * * * *
3252622 GCTAATCTAAGGCTAACAACAATGGAATTAGGGATTATAAGGGTGCCAATGTCCTAATCCAGGGC
66 GCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGC
* * *
3252687 CAACGACGTTGGACATAAAGACGAT
130 CAACGACATTGGACTTAAAGATGAT
* * * * ** * * * * *
3252712 AGGGGTGCAAATCTGCTGATTCATTG-C--C-AC--TAGTCTTAGACATGAAAAAGGTGCCAATG
1 A-AGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* ** * * *
3252771 TGCTGATCCAA-GCCTAGTGACATTGGACTTAAAGATGATAAAGGTGCCGAATAG-GTTCA-CCT
65 TGCTGAT-TAAGGCC-AACGACATTGGACTTAAAGATGATAAAGGTGCC-AAT-GTGCTGATTC-
* * *
3252833 AAGGCTAACAACATTGGACTTAAAGATTAT
125 AAGGCCAACGACATTGGACTTAAAGATGAT
* ** * * * * **
3252863 AAAGGTGCCAAAGTGCTGATTTAAGGCTAGTGACATTAGACTTAAAGATGATAAGGGTGCTGATG
1 -AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * ** * * *** *
3252928 TGCTGATTCATGGCTAACGACACTAGTTTTAAAGAAG-CAAAGGTGCTGGTGTGCTGA-TCTGAG
65 TGCTGATT-AAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTC-AAG
* * *
3252991 GCCAACGACGTTGGACTTAAACACGATT
128 GCCAACGACATTGGACTTAAAGATGA-T
* * * * * * * * *
3253019 AATGTGCTAATTTGCTTATCCAAGG-TATACTACATTGGACTTAAAGATGATAAGGGTGCCAACG
1 AAGGTGCCAATGTGCTGATCCAAGGCCA-GCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * *
3253083 TGCTGATTCAAGGCCAACAACTTTGGACTAAAAGATGATAAAGGTGCCAACGTGCTGATTCATGG
65 TGCTGATT-AAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGG
* * * *
3253148 CCAACGACACTGGTCTTAGAGATGCT
129 CCAACGACATTGGACTTAAAGATGAT
** * * * * * * *
3253174 AAGGTGCCTCTGTGCTGATCTAAGGCCAGCAACATTAGACTTAAAAACGACAAAGGTGCCAATAT
1 AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGT
* * * * * * * *
3253239 GCTGATACAAGACTAGCGACATTGGACTTAAAGATTATAAAGGTGCTAATGTGTTGATCCAAGGC
66 GCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGC
** * *
3253304 CAGGGTCATTGGACTTAAAGATAAT
130 CAACGACATTGGACTTAAAGATGAT
* * * * ** * * * * * * * *
3253329 AAAGGTTCTAGTGTGCTGATCCCAGGCCAATGACATTAGAATTAAAGCTGACAAAGGCGCTACTC
1 -AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * *** * * * *
3253394 CGATGATCTAAGGCTTGCGACATTGGACTTAAAGATTAT-AGGGTGGCAATG-GACTGATCCAAG
65 TGCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTG-CTGATTCAAG
* * *
3253457 GCCAACGACGTTAGACTTAAAGATTAT
128 GCCAACGACATTGGACTTAAAGATGAT
* ** * * *
3253484 AAGGGTTCCAATGCACTGATTCAAGGCCAGCAACATTGGACTTAAAGATGATAAATGTGCCAATG
1 AA-GGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * ** * * * * *
3253549 TGCTGATTCATGGGCAACGACAGTGGTTTTAGAGTTGCT-AAGGTGCCAACGTGCTGATCCAAGG
65 TGCTGATT-AAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGG
* *
3253613 CCAGA-AACATTGGACTTAAACATGAT
129 CCA-ACGACATTGGACTTAAAGATGAT
* * * * * * * * **
3253639 AAAGGTGCCAGTAG-GTTCATCTAAGGCTAACAACATTGGACTTAAAGATTATAGCGGTGCCAAT
1 -AAGGTGCCAAT-GTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAAT
* ** ** * * ** *
3253703 GTGCTGCTTCAAGGCCAGTGACATTTAACTTAAAAATGATAAGGGTGCTGATGTGCTGATTTAAG
64 GTGCTGATT-AAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAG
* * *
3253768 GCCAATGACACTGGTCTTAAAGATGCA-
128 GCCAACGACATTGGACTTAAAGATG-AT
** * * * * * * * ** * *
3253795 AAGGTGCCGGTGTGCTAATCCAAAGCCAACGATAATAGA--TAAAGACGATAAATTTGCTAATTT
1 AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGT
* * * * *
3253858 GCTGATCCAAGGCAAACTACATTGGACTTAAAGATGATAAGGGTGCCAATGTGCTGATTTAAGGC
66 GCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGC
* *
3253923 CAGCAACATTGGACTTAAAGATGAT
130 CAACGACATTGGACTTAAAGATGAT
* * * * ** * * * *
3253948 AAAGGTGCCAATGTGCTGATTCATGGCCAACGACAGTGGTTTTAGAGTTGCT-AAGGTGTCAATG
1 -AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * *
3254012 TGCTGATCCAAGGCCAGCGACATTGGACTTAAACATGATAAAGGTGCCAATAG-GTTCA-TCTAA
65 TGCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAAT-GTGCTGATTC-AA
* * *
3254075 GGCTAACAACATTGGACTTAAAGATTAT
127 GGCCAACGACATTGGACTTAAAGATGAT
* * * * * * * *
3254103 AGCGGTGCCAATGTGCTGCTTCAAGGCCAGTGACATTGAACTTAAAAATGATAAGGGTGCCGATG
1 A-AGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * ** * *
3254168 TGCTGATTTAAGGCCAATGACACTGGTCTTAAAGATG-CAAAGGTGCCGGTGTGCTGATCCAAAG
65 TGCTGA-TTAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGG
*
3254232 CCAACGACATTGGACTTAAAGACGAT
129 CCAACGACATTGGACTTAAAGATGAT
* * * * * * *
3254258 AAATGTGCTAATTTGCTGATCCAAGGCAAACTACATTGGACTTAAAGATGATAAGGGTGCCAATG
1 -AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * *
3254323 TGCTGATTTAAGGCCAGCAAAATTGGAATTAAAGATGATAAAGGTGCCAATGTGCTGATTCATGG
65 TGCTGA-TTAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGG
* * * * ** *
3254388 CCAACGACACTAGTCTGAGGGATGCT
129 CCAACGACATTGGACTTAAAGATGAT
* * * *
3254414 AAGGTGCCAATGTGCTGATCCAAGGCCAGCAACATCGTACTTAAAGATGATAAAGGTGCCAAAGT
1 AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGT
* * * * **
3254479 GCTGATCCAAGGCCAGCGACATTGGACTTAAAGATTATAAAGGTGCCAATGTGTTGACCCAAGGC
66 GCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGC
** * *
3254544 CAGTGTCATTGGACTTCAAGATGAT
130 CAACGACATTGGACTTAAAGATGAT
* * * * ** ** * * * * ** *
3254569 AAAGGTACTAGTGTGTTGATCCCTGGCCAATGACATTAGAATTAAAGCTGACAATA-GCACCACT
1 -AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAA-AGGTGCCAAT
* ** * ** * * ** * * *
3254633 CTAATGATCTAAGGCTAGTGACATTAGACTTAAAGATTATAGGGGTGGCAATGTACTGATCCAAG
64 GTGCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAG
** * * * * * *
3254698 GGTAGCGACGTTAGCCTTCAAGATTAT
128 GCCAACGACATTGGACTTAAAGATGAT
* * ** * * * * * * * *
3254725 AGGGGTTCCAATGCACTGATTCAAGGCCAGCAACACTGGATTTAAAGATTATAATGGAGCAAATG
1 A-AGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * * ** * * *
3254790 TGCCGAATCATGGCCAACGACACTGGTCTTCGAGATGCT-AAGGTGCCAATGTGCTGATCCCAGG
65 TGCTG-ATTAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGG
* *
3254854 CCAGCGACATTGGACTTAAATATGAT
129 CCAACGACATTGGACTTAAAGATGAT
* * * ** ** * * *
3254880 AAAGGTGCCAATAG-GTTCATCTAAGGTTAAAGACATTGGACTTAAATATTATAATGGTGCCAAT
1 -AAGGTGCCAAT-GTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAAT
** * * * *
3254944 GTGCTGATTCAAGGCCAGTGACATTGGACTTGAAGATGATAAGGGTGCCGATGTGCTGATTCATG
64 GTGCTGATT-AAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAG
* * **
3255009 GTCAACGACACTGGTTTTAAAGATGCA-
128 GCCAACGACATTGGACTTAAAGATG-AT
** * * * * * * *
3255036 AAGGTGCCGGTGTGCTGACCCAAGGCCAACGACATTTGACTTAAAGACGATAAATGTGCTAATTT
1 AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGT
* * * * * *
3255101 GCTGATCTAAGGCAAACTACATTTGACTTAAAGATGATAAGGGTGCCAACGTGCTGATTCAATGC
66 GCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGC
* * *
3255166 CAGCAACATTAGACTTAAAGATGAT
130 CAACGACATTGGACTTAAAGATGAT
* * * * * * * * *
3255191 AAAGGTGTCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCT-AGGGTGCCAATG
1 -AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * * * *
3255255 TGCTGATCCAATGCCAGC-AGCATTGAACTTAAAGATGATAAACGTGCCAATGTGCTGATACTTA
65 TGCTGAT-TAAGGCCAACGA-CATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTC-AA
** * * **
3255319 --TAAAGGAGCAAATGTG--TT---GAT-CC
127 GGCCAACGA-C-ATTG-GACTTAAAGATGAT
* * ** ** * *** * * * * *
3255342 AAGGCCAGCGACAT-TG--GACTTTAAGG-TGGTGAGGGTGCAAATTAGCCA-AT--TCATGGCT
1 AAGG--TGCCA-ATGTGCTGA-TCCAAGGCCAGCGACATTG-GACTTA--AAGATGATAAAGG-T
* ** * * * * *
3255400 AGCCACACTAGT--T--TT-A-G--AGATGACAAAGGTGC-CAATGTGTTGATCCAA-G-GCCAA
58 -GCCA-A-T-GTGCTGATTAAGGCCA-ACGACATTGG-ACTTAA--AGATGAT-AAAGGTGCCAA
* * * * ** * *
3255454 CGATAG-TGGAATT-AAAG--AA-AATAAAGGTGC-TAATATGCTGATCT
114 TG-T-GCT-G-ATTCAAGGCCAACGACATTGG-ACTTAA-A-GATGA--T
* * * ** * * * * * * * ** ** *
3255498 AAGGCTAACAACAT-TGGACTTA-AAAATTGCAAAGGTGCCAATGTGCTAATTCAAGGCCGGCAC
1 AAGG-T-GCCA-ATGT-G-CTGATCCAA-GGC-CA-GCGAC-AT-TG-GACTT-AAAGATGATAA
* * * * ** * **
3255561 A-TTG-GACATGAAGATGATATGGGTGCCAATATGCTGATTCATGGCCAATGACACTGGTCTTAG
54 AGGTGCCA-ATG-TGCTGAT-TAAG-GCC-A-A--C-GA--CAT------TG-GACT--T-AAAG
* * * * * ** * * *
3255624 AGAGACAAAGGTGCCAATGTGCTAATCCAAGGCTAGGGACATTGGAGTTCATGATGAT
98 A-TGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAT
*** * * ** *** * *
3255682 AATGGTGCCAATACACTAATCAAAGGAAAAAAAACATTGGACATAAAGATGATAAAGGGTGCAAA
1 AA-GGTGCCAATGTGCTGATCCAAGG-CCAGCGACATTGGACTTAAAGATGATAAA-GGTGCCAA
* ** * * * * * * * * *
3255747 TTTGCTGATTCGTGGCCAGCGACACTAGTCTTAGAGATGA-AGAAGGGGACAATGTGTTGATCCA
63 TGTGCTGATT-AAGGCCAACGACATTGGACTTAAAGATGATA-AAGGTGCCAATGTGCTGATTCA
* * *
3255811 AGGCCAGCGACAATGGACTTTAAGATGAT
126 AGGCCAACGACATTGGACTTAAAGATGAT
** * * * * * ** * *
3255840 AAAGGCACCAATATGCTGATCTAAGGCTAACGACAATGGACTTAGGGATTATAAGGGTGCCAATG
1 -AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * * ** * * **
3255905 TGCTAATCCAAGGCCAATGAAATTGGACATAAAGATGATAGGGGTGCAAATCTGCTGATTCATTG
65 TGCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGG
* * *
3255970 -C--C-AC--TGGTCTTAGAGATGACA
129 CCAACGACATTGGACTTAAAGATGA-T
*
3255991 AAGGTGCCAATGTGCTGATCGAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATAG
1 AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAAT-G
* * * * * * *
3256056 -GTTCATCTAAGGCTAACAACATTGGACTTGAAGATTATAAGGGTGCCAATGTGCTGATTCAAGG
65 TGCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGG
** *
3256120 CCAGTGACATTGGGCTTAAAGATGAT
129 CCAACGACATTGGACTTAAAGATGAT
* * * ** * * *
3256146 AAGGTGCCAATGTGCTGAT-TAATGGCCAACGACACTGGTTTTAAA-AAGGTAAAGGTGCCAGTG
1 AAGGTGCCAATGTGCTGATCCAA-GGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * * * * * *
3256209 TGATGATCCAAAGCCAACAACATTGGACTTAAAAATGAAAAATGTGCTTAATGTGCTGATCCAAG
65 TGCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGC-CAATGTGCTGATTCAAG
* *
3256274 GCAAACGACATTGGACATAAA-ATTGAT
128 GCCAACGACATTGGACTTAAAGA-TGAT
* * * * *
3256301 AAGGGTGCCAATGTGC---T-----G-C-TCGACATTCGACTTAAGGATGACAAAAGTGCCAATG
1 AA-GGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * ** * *
3256356 TACTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAAGCACCAATATGCTGATCCAAGG
65 TGCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGG
* ** *
3256421 TCC-GCGATGTTGGACTTAAAGATTAT
129 -CCAACGACATTGGACTTAAAGATGAT
* * ***
3256447 AAAGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATTATAAAGGCAACAATG
1 -AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * * *
3256512 TGTTGATCCAAGGCCAATGACATTGGACTTAGAGATGATAAAGGTGCCAATGTGTTGATCCAAGG
65 TGCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGG
* * * *
3256577 CCAATGCCATTTGACTTAAAGA--CT
129 CCAACGACATTGGACTTAAAGATGAT
** * * * * * * * * *
3256601 ---CCGCAAATGTGCTAATTCATGGCCAGCGACACTAGTCTTAGAGAGATGATAAAGATGGCAAT
1 AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTA-A-AGATGATAAAGGTGCCAAT
* * * ** * * *
3256663 GTGTTGATCGAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGCACCAATATGTTGATCCAAG
64 GTGCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAG
* * ** *
3256728 GCAAATGACATTGGACTT-GGGATTAT
128 GCCAACGACATTGGACTTAAAGATGAT
* * * ** *
3256754 AAGGGTTCTAATGTGCTGATTCAAGGCCAGCGATGTTGGACTTACAGATGAT-AAGGATGCCAAT
1 AA-GGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGG-TGCCAAT
* * * * ** * * *
3256818 GTGTTGATTCATGGCCAACGACACTAGTTTTAGAGATGA-AAAGGTGCCAACGTGCTGATCCAAG
64 GTGCTGATT-AAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAG
** **
3256882 GCCAGTGACATTGGACTTAAAGACAAT
128 GCCAACGACATTGGACTTAAAGATGAT
* * * * * *
3256909 AAAGTTGCCAATATGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATTATGAGGGTGCCAATC
1 -AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
*** * ** * * *
3256974 TAAGGATTCAAGACCAGTGACATTGGGCTT--A-A-GATAAGGGTGCCAATGTGCTGATTCATGG
65 TGCTGATT-AAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGG
** * * * * * **
3257035 TTAGCGACACTAGTCTTAGAGATGGC
129 CCAACGACATTGGACTTAAAGATGAT
* * * *** *
3257061 AATGGTGCCAATATGCTAATCCAAGG-CAGTGACATCAAATTTAAAGATGATAAAGGTATCAATG
1 AA-GGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATG----A--TA--AA-G
* * * ** * * * *
3257125 GTGCCAATGTACTGATCCAAGGCTAGTGACTTTGGACTTAAAGATTATAAGGGTGCCAATTTGCT
56 GTGCCAATGTGCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* *
3257190 GATTCAAGACCAGCGACATTGGACTT-AAGAT-AT
120 GATTCAAGGCCAACGACATTGGACTTAAAGATGAT
* * ** * * * * * *
3257223 -GGGTGCCAATGTGCTGATTCATA-GTTAGCGACACTAGTCTTAGAGATGACAATGGTGCCAATG
1 AAGGTGCCAATGTGCTGATCCA-AGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * ** * *
3257286 TGCTAATCCAAGG-CAGTGGCATCGGACTTAAAGATGATAAAGGTGCCAATGGTGCCAATGCACT
65 TGCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAAT-GTG-C--TG-A-T
* * * * *
3257350 GGTCCAATGCTAGCGACATTGGACCTAAAGATTAT
123 --T-CAAGGCCAACGACATTGGACTTAAAGATGAT
* * * * *
3257385 AAAAGTGCCAATGTGCTGATCCAAGGCCAGTGACATTGGACTTGAAGATGATAAAGGTGCCATTA
1 -AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * * ** * * * *
3257450 TGCTGATGCATGGCCAATGACATTTGACCTAAATTTGATAACGGTGCCAATCTGTTGATTTAAGG
65 TGCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGG
* ** * * *
3257515 CTAGTGACATTAGATTTAAAGATTAT
129 CCAACGACATTGGACTTAAAGATGAT
* * * * ** * * *
3257541 ACGTGTGCCAATGTGCTGATCCAAGCCCAACGACATTAGACCCAAAGATTATAAGGGTGCTAATG
1 AAG-GTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * *
3257606 TGCTGATTCAAGGCCAGCGAC-TATGGACTTAAAGATGAT-AAGGTTTCCAATGTGCTGATTTAT
65 TGCTGATT-AAGGCCAACGACAT-TGGACTTAAAGATGATAAAGG-TGCCAATGTGCTGATTCAA
* * * *
3257669 GGCCAACGTCACTGGTCTTAGAGATGCA-
127 GGCCAACGACATTGGACTTAAAGATG-AT
* * * * * *
3257697 AAGGTGCTAATGTGCTAATCCAAGGCTAGTGACATTGGACTTAATGATGATAGAGGTGCCAATGT
1 AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGT
* * * * * * * * * * *
3257762 GCTGATCCAAGGCTAGCGACATTTGACTTAAAGATTG-TAAGGGTACAAATCTTCTAATCCAAGG
66 GCTGAT-TAAGGCCAACGACATTGGACTTAAAGA-TGATAAAGGTGCCAATGTGCTGATTCAAGG
* *
3257826 CCAGC-ATCATTGGACTTAAAGATTAT
129 CCAACGA-CATTGGACTTAAAGATGAT
* * * * * * * * *
3257852 GAGGGTTCCAATCTGTTGATTCAAGACCGGCAACATTGGACTT--A-A-GATAAGGGTGCCAATG
1 -AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * * * * * * * * *
3257913 TGCTAATTCATGGCTAGCGACACTGGTCTTAGAGATGACAAAGATGCCAATTTGCTAATCCAAGG
65 TGCTGATT-AAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGG
* *
3257978 CCATCGACATTGGACTTAAAGGTGAT
129 CCAACGACATTGGACTTAAAGATGAT
* * * *
3258004 AAAGGTGCCAATGGTGCCAATGTACTGATCCAAGGCAAACAACATTGGACTTAAAGATTATAAAG
1 -AAGGTGCCAA---TG----TG--CTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAG
* * *
3258069 GTGCCAATGTGCTGATTTAAGGCTAGCGATATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
56 GTGCCAATGTGCTGA-TTAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCT
* * * *
3258134 GA-TCTGAGGCTAACGACATTGGACTCAAAGATTAT
120 GATTC-AAGGCCAACGACATTGGACTTAAAGATGAT
** * * * * *
3258169 AAGGGTGCCAATGTGCTGATTTAAGGCCAGCAACATTGGACTTGAAGATGATAAAGATGCCATTA
1 AA-GGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATG
* * * * * * * * ** *
3258234 TGCTGATCCAAGGACAGCGACATTTGACTTAAAGATTATAAGGGTGCAAATCTTTTGATCCAAGG
65 TGCTGAT-TAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGG
* * **
3258299 CCAGCGTCATTGGACTTAAAGATTTT
129 CCAACGACATTGGACTTAAAGATGAT
* * * * * * * *
3258325 GAGGGTGCCAATCTGTTAATTCAAGACC-GACAACATTGGACTT--A-A-GATAAGGGTGCCAAT
1 -AAGGTGCCAATGTGCTGATCCAAGGCCAG-CGACATTGGACTTAAAGATGATAAAGGTGCCAAT
* * * ** * * * * * * *
3258385 GTGCTAATTCATGGCTAGTGACACTGGTCTTAGAGATGACAAAGATGCCAATTTGCTGATCCAAG
64 GTGCTGATT-AAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAG
*
3258450 GCCAACGACATTGGACTTAAAGGTGAT
128 GCCAACGACATTGGACTTAAAGATGAT
3258477 GATGAAAACC
Statistics
Matches: 4897, Mismatches: 1501, Indels: 603
0.70 0.21 0.09
Matches are distributed among these distances:
146 56 0.01
147 59 0.01
148 7 0.00
149 13 0.00
150 222 0.05
151 119 0.02
152 358 0.07
153 110 0.02
154 213 0.04
155 1648 0.34
156 1424 0.29
157 125 0.03
158 66 0.01
159 11 0.00
160 71 0.01
161 46 0.01
162 13 0.00
163 10 0.00
164 107 0.02
165 122 0.02
166 3 0.00
169 3 0.00
171 2 0.00
172 3 0.00
175 3 0.00
176 10 0.00
177 11 0.00
178 6 0.00
179 3 0.00
180 1 0.00
181 6 0.00
182 5 0.00
183 4 0.00
184 6 0.00
185 9 0.00
186 9 0.00
187 7 0.00
188 6 0.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (154 bp):
AAGGTGCCAATGTGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGT
GCTGATTAAGGCCAACGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAGGCC
AACGACATTGGACTTAAAGATGAT
Found at i:3252014 original size:207 final size:208
Alignment explanation
Indices: 3251749--3258471 Score: 3360
Period size: 207 Copynumber: 32.4 Consensus size: 208
3251739 CCGATAACCT
* * ** * * *
3251749 AAGGCTAGCGACATTGGACTTAAAGATTATAGGGGTGGCC-ATGTACTGATCCAAGGCCAGCGAC
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGT-GCCAATGTGCTGATCCAAGGCTAACGAC
* * * **
3251813 GTTAGACTTAAAGATTATAAGGGTTCCAATGCACTGATTCAAGGCCAACAG-CATTGGACTTAAA
65 ATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAA
* * * * *
3251877 AATGATAAAGGTCCCAATGTGCTGATTCATGGCTAACGAGATTGGTCTTAGAGATGCTAAGGTGC
130 GATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGGTGC
* *
3251942 CAGTATGCTGATCC
195 CAATGTGCTGATCC
* * * ** * *
3251956 AAGGCCAGCAACATTGGACTTAAAGATGATAAAGGGGGCAATGTGCTGATATAAGGCCAGCGACA
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * * * *
3252021 CTGGACTTAATGATTTTAAGGATGCCAATGTGCTGATCCAAGGCC--CATGACATTGGACTTAAA
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACA-GACATTGGACTTAAA
* * * * * * * * * *
3252084 GATGATAAATGTGCCAATGGGCTGCTCCAAGGCCAACGACATTGGACTTTA-AGGTGGTGAGGGT
130 GATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTC-TTAGAGATGCT-AAGGT
* * *
3252148 GCAAAT-TAGCTAATTC
193 GCCAATGT-GCTGATCC
* * * * * * * ** *
3252164 ATGGCTAGCGACACTAGTCTTAGAGATGACAAAGGTGCCAATGTTTTGATCCAAGGCCAACGACA
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * * * * * * * *
3252229 GTGGAATTAAAGATAATAAAGGCT-CCAATATGTTGA-TCTAAGGCTAA-AGTCGTTGGACTTAA
66 TTGGACTTAAAGATTAT-AAGGGTGCCAATGTGCTGATTC-AAGGCCAACAGACATTGGACTTAA
* * * ** * * * * * *
3252291 AGATTG-CAAAGGTGCCAATGTGCTAATTCAAGGCCGGC-ACATTGGACATAAAAATGATAAGG-
129 AGA-TGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGGT
* *
3252353 GCACCAATATGCTGATTC
193 G--CCAATGTGCTGATCC
* * * * * * ***
3252371 ATGGCCAACGACACTGGTCTTAGAGA-GCA-AAAGGTGCTAATGTGCTGATCCAAGGCTGGGGAC
1 AAGGCCAGCGACATTGGACTTAAAGATG-ATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGAC
* * * * * * *
3252434 ATTGGAGTTCAAGATGATAATGGTGCCAATATGCTGA-TCAAAGGCCAAC-GACAATGGACATAA
65 ATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTC-AAGGCCAACAGACATTGGACTTAA
* * * * * * ** *
3252497 AGATGATAAGGGTGCAAATTTGCTAATTCATGGCCAGCGACACTAGTCTTAGAGATGAAGAAGGC
129 AGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATG-CTAAGGT
* *
3252562 GACAATGTGTTGATCC
193 GCCAATGTGCTGATCC
* ** * * * *
3252578 AAGGCCAGCGACAATGGACTTAAAGATGATAAAGGCACCAATATGCTAATCTAAGGCTAACAACA
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * ** * * * * * *
3252643 ATGGAATTAGGGATTATAAGGGTGCCAATGTCCTAATCCAGGGCCAAC-GACGTTGGACATAAAG
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAAG
* ** * * * * * **
3252707 ACGATAGGGGTGCAAATCTGCTGATTCATTG----C--CACTAGTCTTAGACATGAAAAAGGTGC
131 ATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATG-CTAAGGTGC
3252766 CAATGTGCTGATCC
195 CAATGTGCTGATCC
* * *
3252780 AA-GCCTAGTGACATTGGACTTAAAGATGATAAAGGTGCCGAATAG-GTTCA-CCTAAGGCTAAC
1 AAGGCC-AGCGACATTGGACTTAAAGATGATAAAGGTGCC-AAT-GTGCTGATCC-AAGGCTAAC
* * * * * ** *
3252842 AACATTGGACTTAAAGATTATAAAGGTGCCAAAGTGCTGATTTAAGG-CTAGTGACATTAGACTT
62 GACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTT
* ** * * * * * *
3252906 AAAGATGATAAGGGTGCTGATGTGCTGATTCATGGCTAACGACACTAGTTTTAAAGAAGCAAAGG
127 AAAGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGG
*** *
3252971 TGCTGGTGTGCTGATCT
192 TGCCAATGTGCTGATCC
* * * * * * * * * * *
3252988 GAGGCCAACGACGTTGGACTTAAACACGATTAATGTGCTAATTTGCTTATCCAAGG-TATACTAC
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTA-ACGAC
* * * *
3253052 ATTGGACTTAAAGATGATAAGGGTGCCAACGTGCTGATTCAAGGCCAACA-ACTTTGGACTAAAA
65 ATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAA
*
3253116 GATGATAAAGGTGCCAACGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGGTGC
130 GATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGGTGC
** *
3253181 CTCTGTGCTGATCT
195 CAATGTGCTGATCC
* * * * * * * * *
3253195 AAGGCCAGCAACATTAGACTTAAAAACGACAAAGGTGCCAATATGCTGATACAAGACTAGCGACA
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * * * ** *
3253260 TTGGACTTAAAGATTATAAAGGTGCTAATGTGTTGATCCAAGGCC-AGGGTCATTGGACTTAAAG
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAAG
* * * * * * * * ** * * * *
3253324 ATAATAAAGGTTCTAGTGTGCTGATCCCA-GGCCAATGACATTAGAATTAAAGCTGACAAAGGCG
131 ATGATAAAGGTGCCAATGTGCTGAT-TCATGGCCAACGACACTGGTCTTAGAGATG-CTAAGGTG
* * ** * *
3253388 CTACTCCGATGATCT
194 CCAATGTGCTGATCC
** * * * *
3253403 AAGGCTTGCGACATTGGACTTAAAGATTAT-AGGGTGGCAATG-GACTGATCCAAGGCCAACGAC
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTG-CTGATCCAAGGCTAACGAC
* * * ** *
3253466 GTTAGACTTAAAGATTATAAGGGTTCCAATGCACTGATTCAAGGCCAGCA-ACATTGGACTTAAA
65 ATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAA
* * * * *
3253530 GATGATAAATGTGCCAATGTGCTGATTCATGGGCAACGACAGTGGTTTTAGAGTTGCTAAGGTGC
130 GATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGGTGC
*
3253595 CAACGTGCTGATCC
195 CAATGTGCTGATCC
** * * * * * *
3253609 AAGGCCAGAAACATTGGACTTAAACATGATAAAGGTGCCAGTAG-GTTCATCTAAGGCTAACAAC
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAAT-GTGCTGATCCAAGGCTAACGAC
* ** **
3253673 ATTGGACTTAAAGATTAT-AGCGGTGCCAATGTGCTGCTTCAAGGCC-AGTGACATTTAACTTAA
65 ATTGGACTTAAAGATTATAAG-GGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAA
* * ** * * * * *
3253736 AAATGATAAGGGTGCTGATGTGCTGATTTAAGGCCAATGACACTGGTCTTAAAGATGCAAAGGTG
129 AGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGGTG
** *
3253801 CCGGTGTGCTAATCC
194 CCAATGTGCTGATCC
* * * * * * ** * * * *
3253816 AAAGCCAACGATAATAGA--TAAAGACGATAAATTTGCTAATTTGCTGATCCAAGGCAAACTACA
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * *
3253879 TTGGACTTAAAGATGATAAGGGTGCCAATGTGCTGATTTAAGGCCAGCA-ACATTGGACTTAAAG
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAAG
* * * *
3253943 ATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACAGTGGTTTTAGAGTTGCTAAGGTGTC
131 ATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGGTGCC
3254008 AATGTGCTGATCC
196 AATGTGCTGATCC
* * * * *
3254021 AAGGCCAGCGACATTGGACTTAAACATGATAAAGGTGCCAATAG-GTTCATCTAAGGCTAACAAC
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAAT-GTGCTGATCCAAGGCTAACGAC
* ** *
3254085 ATTGGACTTAAAGATTAT-AGCGGTGCCAATGTGCTGCTTCAAGGCC-AGTGACATTGAACTTAA
65 ATTGGACTTAAAGATTATAAG-GGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAA
* * * * * * * *
3254148 AAATGATAAGGGTGCCGATGTGCTGATTTAAGGCCAATGACACTGGTCTTAAAGATGCAAAGGTG
129 AGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGGTG
**
3254213 CCGGTGTGCTGATCC
194 CCAATGTGCTGATCC
* * * * * * * *
3254228 AAAGCCAACGACATTGGACTTAAAGACGATAAATGTGCTAATTTGCTGATCCAAGGCAAACTACA
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * * * *
3254293 TTGGACTTAAAGATGATAAGGGTGCCAATGTGCTGATTTAAGGCCAGCA-AAATTGGAATTAAAG
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAAG
* * *
3254357 ATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTAGTCTGAGGGATGCTAAGGTGCC
131 ATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGGTGCC
3254422 AATGTGCTGATCC
196 AATGTGCTGATCC
* * * * * *
3254435 AAGGCCAGCAACATCGTACTTAAAGATGATAAAGGTGCCAAAGTGCTGATCCAAGGCCAGCGACA
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * ** ** * *
3254500 TTGGACTTAAAGATTATAAAGGTGCCAATGTGTTGACCCAAGGCC-AGTGTCATTGGACTTCAAG
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAAG
* * * * * * * * * ** * * * **
3254564 ATGATAAAGGTACTAGTGTGTTGATCCCTGGCCAATGACATTAGAATTAAAGCTGAC-AATAGCA
131 ATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATG-CTAA-GGTG
* * ** *
3254628 CCACTCTAATGATCT
194 CCAATGTGCTGATCC
* * * * ** * * * * *
3254643 AAGGCTAGTGACATTAGACTTAAAGATTATAGGGGTGGCAATGTACTGATCCAAGGGTAGCGACG
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * * * * ** * * *
3254708 TTAGCCTTCAAGATTATAGGGGTTCCAATGCACTGATTCAAGGCCAGCA-ACACTGGATTTAAAG
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAAG
* * * * * * *
3254772 ATTATAATGGAGCAAATGTGCCGAATCATGGCCAACGACACTGGTCTTCGAGATGCTAAGGTGCC
131 ATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGGTGCC
3254837 AATGTGCTGATCC
196 AATGTGCTGATCC
* * * * * * *
3254850 CAGGCCAGCGACATTGGACTTAAATATGATAAAGGTGCCAATAG-GTTCATCTAAGGTTAAAGAC
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAAT-GTGCTGATCCAAGGCTAACGAC
* * ** *
3254914 ATTGGACTTAAATATTATAATGGTGCCAATGTGCTGATTCAAGGCC-AGTGACATTGGACTTGAA
65 ATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAA
* * * * * *
3254978 GATGATAAGGGTGCCGATGTGCTGATTCATGGTCAACGACACTGGTTTTAAAGATGCAAAGGTGC
130 GATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGGTGC
** *
3255043 CGGTGTGCTGACCC
195 CAATGTGCTGATCC
* * * * * * * * *
3255057 AAGGCCAACGACATTTGACTTAAAGACGATAAATGTGCTAATTTGCTGATCTAAGGCAAACTACA
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * * * * *
3255122 TTTGACTTAAAGATGATAAGGGTGCCAACGTGCTGATTCAATGCCAGCA-ACATTAGACTTAAAG
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAAG
* *
3255186 ATGATAAAGGTGTCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAGGGTGCC
131 ATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGGTGCC
3255251 AATGTGCTGATCC
196 AATGTGCTGATCC
* * * *
3255264 AATGCCAGC-AGCATTGAACTTAAAGATGATAAACGTGCCAATGTGCTGATACTTATAAAGG--A
1 AAGGCCAGCGA-CATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGAT-C----CAAGGCTA
* * * * ** * * * ** * * * *
3255326 GC-AAATGTGTTGA-TCCAAGGCCAGCGACATTGGACT-TTAAGGTGGTGAGGGTGCAAATTAGC
60 ACGACAT-TG--GACT-TAAAG--A-TTATA-AGG-GTGCCAATGTGCTGA---TTC-AA--GGC
* * ** * * * * *
3255388 CAATTCATGGCTAGCCACACTAGTTTTAGAGATGACAAAGGTGCCAATGTGTTGATCCAAGGCCA
110 C-A---A---C-AG--ACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATTCATGGCCA
* * ** * *** * * *
3255453 ACGATAGTGGAATTAAAGAAAATAAAGGTGCTAATATGCTGATCT
165 ACGACACTGGTCTTAGAGATGCT-AAGGTGCCAATGTGCTGATCC
* * * * * * * ***
3255498 AAGGCTAACAACATTGGACTTAAAAATTG-CAAAGGTGCCAATGTGCTAATTCAAGGCCGGC-AC
1 AAGGCCAGCGACATTGGACTTAAAGA-TGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGAC
* * * * * * * * * *
3255561 ATTGGACATGAAGATGATATGGGTGCCAATATGCTGATTCATGGCCAA-TGACACTGGTCTTAGA
65 ATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAA
* * * * * ** * ** * *
3255625 GA-GACAAAGGTGCCAATGTGCTAATCCAAGGCTAGGGACATTGGAGTTCA-TGATGATAATGGT
130 GATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTT-AGAGATGCTAA-GGT
*** * *
3255688 GCCAATACACTAATCA
193 GCCAATGTGCTGATCC
** *** * * * * ** * *
3255704 AAGGAAAAAAAACATTGGACATAAAGATGATAAAGGGTGCAAATTTGCTGATTCGTGGCCAGCGA
1 AAGG-CCAGCGACATTGGACTTAAAGATGATAAA-GGTGCCAATGTGCTGATCCAAGGCTAACGA
* * * * * * * * * * * *
3255769 CACTAGTCTTAGAGATGAAGAAGGG-GACAATGTGTTGATCCAAGGCCAGC-GACAATGGACTTT
64 CATTGGACTTAAAGAT-TATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTA
** * * * * * * **
3255832 AAGATGATAAAGGCACCAATATGCTGA-TCTAAGGCTAACGACAATGGACTTAGGGATTATAAGG
128 AAGATGATAAAGGTGCCAATGTGCTGATTC-ATGGCCAACGACACTGGTCTTAGAGATGCTAA-G
*
3255896 GTGCCAATGTGCTAATCC
191 GTGCCAATGTGCTGATCC
** * * ** * * * **
3255914 AAGGCCAATGAAATTGGACATAAAGATGATAGGGGTGCAAATCTGCTGATTCATTGC---C-AC-
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * * * * *
3255974 -TGGTCTTAGAGATGACAAAGGTGCCAATGTGCTGA-TCGAAGGCCAGC-GACATTGGACTTAAA
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTC-AAGGCCAACAGACATTGGACTTAAA
* * * * * * * **
3256036 GATGATAAAGGTGCCAATAG-GTTCA-TCTAAGGCTAACAACATTGGACTT-GAAGATTATAAGG
130 GATGATAAAGGTGCCAAT-GTGCTGATTC-ATGGCCAACGACACTGGTCTTAG-AGATGCTAA-G
*
3256098 GTGCCAATGTGCTGATTC
191 GTGCCAATGTGCTGATCC
* * * *
3256116 AAGGCCAGTGACATTGGGCTTAAAGATGAT-AAGGTGCCAATGTGCTGAT-TAATGGCCAACGAC
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAA-GGCTAACGAC
* ** * * * * * *
3256179 ACTGGTTTTAAAAAGGTA-AA-GGTGCCAGTGTGATGATCCAAAGCCAACA-ACATTGGACTTAA
65 ATTGGACTTAAAGA-TTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAA
* * * * * * * * * * * *
3256241 AAATGAAAAATGTGCTTAATGTGCTGATCCAAGGCAAACGACATTGGACATA-AAATTGATAAGG
129 AGATGATAAAGGTGC-CAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGA-TGCTAA-G
3256305 GTGCCAATGTGC---T--
191 GTGCCAATGTGCTGATCC
* * * * * * * *
3256318 ---G-C-TCGACATTCGACTTAAGGATGACAAAAGTGCCAATGTACTGATCCAAGGCCAGCGACA
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* ** ** * * * **
3256378 TTGGACTTAAAGATGATAAAAGCACCAATATGCTGATCCAAGGTCC-GC-GATGTTGGACTTAAA
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGG-CCAACAGACATTGGACTTAAA
* * * * * * * * ** *
3256441 GATTATAAAGGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATTATAAAG-GC
130 GATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGGTGC
*
3256505 AACAATGTGTTGATCC
195 --CAATGTGCTGATCC
** * * * * *
3256521 AAGGCCAATGACATTGGACTTAGAGATGATAAAGGTGCCAATGTGTTGATCCAAGGCCAATGCCA
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * ** * * * * * * *
3256586 TTTGACTTAAAGA--CT----CCGCAAATGTGCTAATTCATGGCCAGC-GACACTAGTCTTAGAG
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTA-A-
* * * * * * * * *
3256644 AGATGATAAAGATGGCAATGTGTTGA-TCGAAGGCCAGCGACATTGGACTTAAAGATGATAAAGG
129 AGATGATAAAGGTGCCAATGTGCTGATTC-ATGGCCAACGACACTGGTCTTAGAGATGCT-AAGG
** * *
3256708 CACCAATATGTTGATCC
192 TGCCAATGTGCTGATCC
* ** ** * * * * * * * **
3256725 AAGGCAAATGACATTGGACTT-GGGATTATAAGGGTTCTAATGTGCTGATTCAAGGCCAGCGATG
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * * * * * * ** *
3256789 TTGGACTTACAGATGATAAGGATGCCAATGTGTTGATTCATGGCCAAC-GACACTAGTTTTAGAG
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAAG
* * * ** * * * *** *
3256853 ATGA-AAAGGTGCCAACGTGCTGATCCAAGGCCAGTGACATTGGACTTAAAGACAATAAAGTTGC
131 ATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCT-AAGGTGC
*
3256917 CAATATGCTGATCC
195 CAATGTGCTGATCC
* * * * *** * * * **
3256931 AAGGCCAGCGACATTGGACTTAAAGATTATGAGGGTGCCAATCTAAGGATTCAAGACCAGTGACA
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * ** * * * * *
3256996 TTGGGCTT-AAG---ATAAGGGTGCCAATGTGCTGATTCATGGTTAGC-GACACTAGTCTTAGAG
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAAG
** * * * * * ** *** *
3257056 ATGGCAATGGTGCCAATATGCTAATCCAAGG-CAGTGACATCAAAT-TTAAAGATGATAAAGGTA
131 ATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACA-CTGGTCTT--AGA-GAT----G-C
*
3257119 TCAATGGTGCCAATGTACTGATCC
187 T-AA-GGTGCCAATGTGCTGATCC
* * * * * * * * * *
3257143 AAGGCTAGTGACTTTGGACTTAAAGATTATAAGGGTGCCAATTTGCTGATTCAAGACCAGCGACA
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
** * * * * *
3257208 TTGGACTT-AAGA-TAT--GGGTGCCAATGTGCTGATTCATA-GTTAGC-GACACTAGTCTTAGA
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCA-AGGCCAACAGACATTGGACTTAAA
* * * * * ** * * * *
3257267 GATGACAATGGTGCCAATGTGCTAATCCAAGG-CAGTGGCA-TCGGACTTAAAGATGATAAAGGT
130 GATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACT-GGTCTTAGAGATGCT-AAGGT
3257330 GCCAATGGTGCCAATGCACTGGTCC
193 GCCAAT-GTG-C--TG-A----TCC
* * * * * * **
3257355 AATGCTAGCGACATTGGACCTAAAGATTATAAAAGTGCCAATGTGCTGATCCAAGGCCAGTGACA
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * * * * * * * * * *
3257420 TTGGACTTGAAGATGATAAAGGTGCCATTATGCTGATGCATGGCCAA-TGACATTTGACCTAAAT
66 TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAAG
* * * * * * * ** * * * ** *
3257484 TTGATAACGGTGCCAATCTGTTGATTTAAGGCTAGTGACATTAGAT-TTAAAGATTATACGTGTG
131 ATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACT-GGTCTTAGAGATGCTAAG-GTG
3257548 CCAATGTGCTGATCC
194 CCAATGTGCTGATCC
* * * ** * * * * * *
3257563 AAGCCCAACGACATTAGACCCAAAGATTATAAGGGTGCTAATGTGCTGATTCAAGGCCAGCGAC-
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
* * * * * * * * *
3257627 TATGGACTTAAAGATGATAAGGTTTCCAATGTGCTGATTTATGGCCAAC-GTCACTGGTCTTAGA
66 T-TGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAA
* * * * * * ** * * *
3257691 GATG-CAAAGGTGCTAATGTGCTAATCCAAGGCTAGTGACATTGGACTTA-ATGATGATAGAGGT
130 GATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGA-GATGCTA-AGGT
3257754 GCCAATGTGCTGATCC
193 GCCAATGTGCTGATCC
* * * * * * * * * *
3257770 AAGGCTAGCGACATTTGACTTAAAGATTG-TAAGGGTACAAATCTTCTAATCCAAGGCCAGC-AT
1 AAGGCCAGCGACATTGGACTTAAAGA-TGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGA-
* * * * * **
3257833 CATTGGACTTAAAGATTATGAGGGTTCCAATCTGTTGATTCAAGACCGGCA-ACATTGGACTT--
64 CATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAA
* * * * * *
3257895 A-A-GATAAGGGTGCCAATGTGCTAATTCATGGCTAGCGACACTGGTCTTAGAGATGACAAAGAT
129 AGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATG-CTAAGGT
* *
3257958 GCCAATTTGCTAATCC
193 GCCAATGTGCTGATCC
* *
3257974 AAGGCCATCGACATTGGACTTAAAGGTGATAAAGGTGCCAATGGTGCCAATGTACTGATCCAAGG
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAA---TG----TG--CTGATCCAAGG
* * * * * * *
3258039 CAAACAACATTGGACTTAAAGATTATAAAGGTGCCAATGTGCTGATTTAAGGCTAGC-GATATTG
57 CTAACGACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTG
* * * * * * *
3258103 GACTTAAAGATGATAAAGGTGCCAATGTGCTGATCTGA-GGCTAACGACATTGGACTCAAAGATT
122 GACTTAAAGATGATAAAGGTGCCAATGTGCTGAT-TCATGGCCAACGACACTGGTCTTAGAGATG
* **
3258167 ATAAGGGTGCCAATGTGCTGATTT
186 CTAA-GGTGCCAATGTGCTGATCC
* * * * * *
3258191 AAGGCCAGCAACATTGGACTTGAAGATGATAAAGATGCCATTATGCTGATCCAAGGAC-AGCGAC
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGG-CTAACGAC
* * * ** * * *
3258255 ATTTGACTTAAAGATTATAAGGGTGCAAATCTTTTGATCCAAGGCCAGC-GTCATTGGACTTAAA
65 ATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAA
** * * * * * * * * * * *
3258319 GATTTTGAGGGTGCCAATCTGTTAATTCAAGACCGACAACATTGGACTTA-AGA---TAAGGGTG
130 GATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAA-GGTG
* *
3258380 CCAATGTGCTAATTC
194 CCAATGTGCTGATCC
* * * * * * * * * *
3258395 ATGGCTAGTGACACTGGTCTTAGAGATGACAAAGATGCCAATTTGCTGATCCAAGGCCAACGACA
1 AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
3258460 TTGGACTTAAAG
66 TTGGACTTAAAG
3258472 GTGATGATGA
Statistics
Matches: 5017, Mismatches: 1258, Indels: 485
0.74 0.19 0.07
Matches are distributed among these distances:
196 2 0.00
197 19 0.00
198 82 0.02
199 44 0.01
200 3 0.00
201 30 0.01
202 233 0.05
203 202 0.04
204 289 0.06
205 184 0.04
206 359 0.07
207 1895 0.38
208 794 0.16
209 133 0.03
210 72 0.01
211 6 0.00
212 239 0.05
213 70 0.01
214 8 0.00
215 5 0.00
216 70 0.01
217 116 0.02
218 7 0.00
219 2 0.00
220 3 0.00
221 2 0.00
222 3 0.00
223 2 0.00
224 10 0.00
225 3 0.00
226 1 0.00
228 4 0.00
229 5 0.00
230 3 0.00
231 5 0.00
233 55 0.01
234 54 0.01
235 3 0.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (208 bp):
AAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAATGTGCTGATCCAAGGCTAACGACA
TTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTCAAGGCCAACAGACATTGGACTTAAAG
ATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACGACACTGGTCTTAGAGATGCTAAGGTGCC
AATGTGCTGATCC
Found at i:3252500 original size:206 final size:207
Alignment explanation
Indices: 3252160--3252531 Score: 439
Period size: 206 Copynumber: 1.8 Consensus size: 207
3252150 AAATTAGCTA
* * **
3252160 ATTCATGGCTAGCGACACTAGTCTTAGAGATGACAAAGGTGCCAATGTTTTGATCCAAGGCCAAC
1 ATTCATGGCCAACGACACTAGTCTTAGAGATGACAAAGGTGCCAATGTGCTGATCCAAGGCCAAC
* * * * ** *
3252225 GACAGTGGAATTAAAGATAATAAAGGCTCCAATATGTTGATCTAAGGCTAAAGTCGTTGGACTTA
66 GACAGTGGAATTAAAGATAATAAAGGCTCCAATATGCTGATCAAAGGCCAAAGACAATGGACATA
*
3252290 AAGATTGCA-AA-GGTGCCAATGTGCTAATTCAAGGCCGGCACATTGGACATAAAAATGATAAGG
131 AAGA-TG-ATAAGGGTGCAAATGTGCTAATTCAAGGCCGGCACATTGGACATAAAAATGATAAGG
3252353 GCACCAATATGCTG
194 GCACCAATATGCTG
* * ***
3252367 ATTCATGGCCAACGACACTGGTCTTAGAGA-G-CAAAAGGTGCTAATGTGCTGATCCAAGGCTGG
1 ATTCATGGCCAACGACACTAGTCTTAGAGATGAC-AAAGGTGCCAATGTGCTGATCCAAGGCCAA
* * * * * * *
3252430 GGACATTGGAGTTCAAGATGATAATGG-TGCCAATATGCTGATCAAAGGCCAACGACAATGGACA
65 CGACAGTGGAATTAAAGATAATAAAGGCT-CCAATATGCTGATCAAAGGCCAAAGACAATGGACA
* *
3252494 TAAAGATGATAAGGGTGCAAATTTGCTAATTCATGGCC
129 TAAAGATGATAAGGGTGCAAATGTGCTAATTCAAGGCC
3252532 AGCGACACTA
Statistics
Matches: 135, Mismatches: 26, Indels: 9
0.79 0.15 0.05
Matches are distributed among these distances:
204 1 0.01
205 6 0.04
206 101 0.75
207 27 0.20
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (207 bp):
ATTCATGGCCAACGACACTAGTCTTAGAGATGACAAAGGTGCCAATGTGCTGATCCAAGGCCAAC
GACAGTGGAATTAAAGATAATAAAGGCTCCAATATGCTGATCAAAGGCCAAAGACAATGGACATA
AAGATGATAAGGGTGCAAATGTGCTAATTCAAGGCCGGCACATTGGACATAAAAATGATAAGGGC
ACCAATATGCTG
Found at i:3256018 original size:202 final size:203
Alignment explanation
Indices: 3255717--3256165 Score: 546
Period size: 202 Copynumber: 2.2 Consensus size: 203
3255707 GAAAAAAAAC
* *
3255717 ATTGGACATAAAGATGATAAAGGGTGCAAATTTGCTGATTCGTGGCCAGCGACACTAGTCTTAGA
1 ATTGGACATAAAGATGAT--AGGGTGCAAATCTGCTGATTCAT---CAGC-ACACTAGTCTTAGA
* *
3255782 GATGAAGAAGGGGACAATGTGTTGATCCAAGGCCAGCGACAATGGACTTTAAGATGATAAAGGCA
60 GATGAAGAAGGGGACAATGTGCTGATCCAAGGCCAGCGACAATGGACTTAAAGATGATAAAGGCA
* * * *
3255847 CCAATATGCTGATCTAAGGCTAACGACAATGGACTT-AGGGATTATAAGGGTGCCAATGTGCTAA
125 CCAATAGGCTCATCTAAGGCTAACAACAATGGACTTGA-AGATTATAAGGGTGCCAATGTGCTAA
3255911 TCCAAGGCCAATGAA
189 TCCAAGGCCAATGAA
* *
3255926 ATTGGACATAAAGATGATAGGGGTGCAAATCTGCTGATTCAT-TGC-CACTGGTCTTAGAGATGA
1 ATTGGACATAAAGATGATA-GGGTGCAAATCTGCTGATTCATCAGCACACTAGTCTTAGAGATGA
* * * * **
3255989 CA-AAGGTGCCAATGTGCTGATCGAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGTGCCAA
65 -AGAAGGGGACAATGTGCTGATCCAAGGCCAGCGACAATGGACTTAAAGATGATAAAGGCACCAA
* * * *
3256053 TAGGTTCATCTAAGGCTAACAACATTGGACTTGAAGATTATAAGGGTGCCAATGTGCTGATTCAA
129 TAGGCTCATCTAAGGCTAACAACAATGGACTTGAAGATTATAAGGGTGCCAATGTGCTAATCCAA
* *
3256118 GGCCAGTGAC
194 GGCCAATGAA
* * * * *
3256128 ATTGGGCTTAAAGATGATAAGGTGCCAATGTGCTGATT
1 ATTGGACATAAAGATGATAGGGTGCAAATCTGCTGATT
3256166 AATGGCCAAC
Statistics
Matches: 210, Mismatches: 27, Indels: 14
0.84 0.11 0.06
Matches are distributed among these distances:
201 16 0.08
202 151 0.72
203 2 0.01
204 2 0.01
207 1 0.00
208 20 0.10
209 18 0.09
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (203 bp):
ATTGGACATAAAGATGATAGGGTGCAAATCTGCTGATTCATCAGCACACTAGTCTTAGAGATGAA
GAAGGGGACAATGTGCTGATCCAAGGCCAGCGACAATGGACTTAAAGATGATAAAGGCACCAATA
GGCTCATCTAAGGCTAACAACAATGGACTTGAAGATTATAAGGGTGCCAATGTGCTAATCCAAGG
CCAATGAA
Found at i:3256111 original size:150 final size:150
Alignment explanation
Indices: 3255833--3256116 Score: 329
Period size: 150 Copynumber: 1.9 Consensus size: 150
3255823 ATGGACTTTA
* * * ** * *
3255833 AGATGATAAAGGCACCAATATGCTGATCTAAGGCTAACGACAATGGACTTAGGGATTATAAGGGT
1 AGATGACAAAGGCACCAATATGCTGATCGAAGGCCAACGACAATGGACTTAAAGATGATAAAGGT
* *
3255898 GCCAATGTGCTAATCCAAGGCCAATGAAATTGGACATAAAGATGATAGGGGTGCAAATCTGCTGA
66 GCCAATGTGCTAATCCAAGGCCAATCAAATTGGACATAAAGATGATAAGGGTGCAAATCTGCTGA
3255963 TTCATTGCCACTGGTCTTAG
131 TTCATTGCCACTGGTCTTAG
** * * *
3255983 AGATGACAAAGGTGCCAATGTGCTGATCGAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGT
1 AGATGACAAAGGCACCAATATGCTGATCGAAGGCCAACGACAATGGACTTAAAGATGATAAAGGT
* * * * * * * * *
3256048 GCCAATAG-GTTCATCTAAGGCTAA-CAACATTGGACTTGAAGATTATAAGGGTGCCAATGTGCT
66 GCCAAT-GTGCTAATCCAAGGCCAATCAA-ATTGGACATAAAGATGATAAGGGTGCAAATCTGCT
3256111 GATTCA
129 GATTCA
3256117 AGGCCAGTGA
Statistics
Matches: 109, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
149 2 0.02
150 106 0.97
151 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (150 bp):
AGATGACAAAGGCACCAATATGCTGATCGAAGGCCAACGACAATGGACTTAAAGATGATAAAGGT
GCCAATGTGCTAATCCAAGGCCAATCAAATTGGACATAAAGATGATAAGGGTGCAAATCTGCTGA
TTCATTGCCACTGGTCTTAG
Found at i:3257108 original size:100 final size:100
Alignment explanation
Indices: 3257004--3257320 Score: 249
Period size: 100 Copynumber: 3.0 Consensus size: 100
3256994 CATTGGGCTT
*
3257004 AAGATAAGGGTGCCAATGTGCTGATTCATGGTTAGCGACACTAGTCTTAGAGATGGCAATGGTGC
1 AAGATAAGGGTGCCAATGTGCTGATTCATGGTTAGCGACACTAGTCTTAGAGATGACAATGGTGC
*
3257069 CAATATGCTAATCCAAGGCAGTGACATCAAATTTAA
66 CAATATGCTAATCCAAGGCAGTGACATCAAACTT-A
* * * * * ** * * *
3257105 AGATGATAAAGGTATCAATGGTGCCAATGTACTGATCCAAGGCTAGTGACTTTGGACTTAAAGAT
1 A-A-GAT-AA-G-------GGTGCCAATGTGCTGATTCATGGTTAGCGACACTAGTCTTAGAGAT
* * * * * * * * ***
3257170 TATAAGGGTGCCAATTTGCTGATTCAAGACCAGCGACATTGGACTT-
55 GACAATGGTGCCAATATGCTAATCCAAG-GCAGTGACATCAAACTTA
* *
3257216 AAGATATGGGTGCCAATGTGCTGATTCATAGTTAGCGACACTAGTCTTAGAGATGACAATGGTGC
1 AAGATAAGGGTGCCAATGTGCTGATTCATGGTTAGCGACACTAGTCTTAGAGATGACAATGGTGC
* * **
3257281 CAATGTGCTAATCCAAGGCAGTGGCATCGGACTTA
66 CAATATGCTAATCCAAGGCAGTGACATCAAACTTA
3257316 AAGAT
1 AAGAT
3257321 GATAAAGGTG
Statistics
Matches: 158, Mismatches: 45, Indels: 27
0.69 0.20 0.12
Matches are distributed among these distances:
99 13 0.08
100 62 0.39
101 1 0.01
102 1 0.01
103 3 0.02
104 2 0.01
105 1 0.01
107 1 0.01
108 1 0.01
109 3 0.02
110 1 0.01
111 1 0.01
112 57 0.36
113 11 0.07
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (100 bp):
AAGATAAGGGTGCCAATGTGCTGATTCATGGTTAGCGACACTAGTCTTAGAGATGACAATGGTGC
CAATATGCTAATCCAAGGCAGTGACATCAAACTTA
Found at i:3257210 original size:212 final size:212
Alignment explanation
Indices: 3256450--3257848 Score: 895
Period size: 212 Copynumber: 6.7 Consensus size: 212
3256440 AGATTATAAA
* * * * *
3256450 GGTGCCAATGTACTGATCCAAGGCCAGCGACATTGGACTTAAAGATTATAAAGG--CAA------
1 GGTGCCAATGTGCTAATCCAAGG-CAGTGACATCGGACTTAAAGATGATAAAGGTACAATGGTGC
** * ** * * * * *
3256507 CAATGTGTTGATCCAAGGCCAATGACATTGGACTTAGAGATGATAAAGGTGCCAATGTGTTGATC
65 CAATGTACTGATCCAAGGCTAGCGACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATT
* ** * * ** * * **
3256572 CAAGGCCAATGCCATTTGACTTAAAGACT----CCGCAAATGTGCTAATTCATGGCCAGCGACAC
130 CAAGACCAGCGACATTGGACTTAAAGA-TAAGGGTGCCAATGTGCTGATTCATGGTTAGCGACAC
** *
3256633 TAGTCTTAGAGAGATGATAAA
194 TAGTCTT--AGAGATGGCAAT
* * * * * * * *
3256654 GATGGCAATGTGTTGATCGAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGCACCAA---T-
1 GGTGCCAATGTGCTAATCCAAGG-CAGTGACATCGGACTTAAAGATGATAAAGGTA-CAATGGTG
* ** ** * *
3256715 ---ATGT--TGATCCAAGGCAAATGACATTGGACTT-GGGATTATAAGGGTTCTAATGTGCTGAT
64 CCAATGTACTGATCCAAGGCTAGCGACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGAT
* ** * * ** *
3256774 TCAAGGCCAGCGATGTTGGACTTACAGATGATAAGGATGCCAATGTGTTGATTCATGGCCAACGA
129 TCAAGACCAGCGACATTGGACTTA-A-A-GATAAGGGTGCCAATGTGCTGATTCATGGTTAGCGA
* * *
3256839 CACTAGTTTTAGAGAT-GAAAA
191 CACTAGTCTTAGAGATGGCAAT
* * * * *
3256860 GGTGCCAACGTGCTGATCCAAGGCCAGTGACATTGGACTT-AA-A-GA-CAA--TA-AA-GTTGC
1 GGTGCCAATGTGCTAATCCAAGG-CAGTGACATCGGACTTAAAGATGATAAAGGTACAATGGTGC
* * * * * ***
3256917 CAATATGCTGATCCAAGGCCAGCGACATTGGACTTAAAGATTATGAGGGTGCCAATCTAAGGATT
65 CAATGTACTGATCCAAGGCTAGCGACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATT
* *
3256982 CAAGACCAGTGACATTGGGCTT-AAGATAAGGGTGCCAATGTGCTGATTCATGGTTAGCGACACT
130 CAAGACCAGCGACATTGGACTTAAAGATAAGGGTGCCAATGTGCTGATTCATGGTTAGCGACACT
3257046 AGTCTTAGAGATGGCAAT
195 AGTCTTAGAGATGGCAAT
* ** *
3257064 GGTGCCAATATGCTAATCCAAGGCAGTGACATCAAATTTAAAGATGATAAAGGTATCAATGGTGC
1 GGTGCCAATGTGCTAATCCAAGGCAGTGACATCGGACTTAAAGATGATAAAGGTA-CAATGGTGC
* * *
3257129 CAATGTACTGATCCAAGGCTAGTGACTTTGGACTTAAAGATTATAAGGGTGCCAATTTGCTGATT
65 CAATGTACTGATCCAAGGCTAGCGACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATT
* *
3257194 CAAGACCAGCGACATTGGACTT-AAGATATGGGTGCCAATGTGCTGATTCATAGTTAGCGACACT
130 CAAGACCAGCGACATTGGACTTAAAGATAAGGGTGCCAATGTGCTGATTCATGGTTAGCGACACT
*
3257258 AGTCTTAGAGATGACAAT
195 AGTCTTAGAGATGGCAAT
* *
3257276 GGTGCCAATGTGCTAATCCAAGGCAGTGGCATCGGACTTAAAGATGATAAAGGTGCCAATGGTGC
1 GGTGCCAATGTGCTAATCCAAGGCAGTGACATCGGACTTAAAGATGATAAAGGT-ACAATGGTGC
* * * * ** *
3257341 CAATGCACTGGTCCAATGCTAGCGACATTGGACCTAAAGATTATAAAAGTGCCAATGTGCTGATC
65 CAATGTACTGATCCAAGGCTAGCGACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATT
* * * * * * ** **
3257406 CAAGGCCAGTGACATTGGACTTGAAGATGATAAAGGTGCCATTATGCTGATGCATGGCCAATGAC
130 CAAGACCAGCGACATTGGACTT-AA-A-GATAAGGGTGCCAATGTGCTGATTCATGGTTAGCGAC
* * * * * ** ** *
3257471 ATTTGACCTAAATTTGATAAC
192 ACTAGTCTTAGAGATGGCAAT
* * * ** ** * *
3257492 GGTGCCAATCTGTTGATTTAAGGCTAGTGACATTAGATTTAAAGAT--T--A--TAC-GT-GTGC
1 GGTGCCAATGTGCTAATCCAAGGC-AGTGACATCGGACTTAAAGATGATAAAGGTACAATGGTGC
* * * * * ** *
3257549 CAATGTGCTGATCCAAGCCCAACGACATTAGACCCAAAGATTATAAGGGTGCTAATGTGCTGATT
65 CAATGTACTGATCCAAGGCTAGCGACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATT
* * * * ** * *
3257614 CAAGGCCAGCGAC-TATGGACTTAAAGATGATAAGGTTTCCAATGTGCTGATTTATGGCCAACGT
130 CAAGACCAGCGACAT-TGGACTT-AA-A-GATAAGGGTGCCAATGTGCTGATTCATGGTTAGCGA
* *
3257678 CACTGGTCTTAGAGAT-GCAAA
191 CACTAGTCTTAGAGATGGCAAT
* * *
3257699 GGTGCTAATGTGCTAATCCAAGGCTAGTGACATTGGACTTAATGATGAT--A-G----A-GGTGC
1 GGTGCCAATGTGCTAATCCAAGGC-AGTGACATCGGACTTAAAGATGATAAAGGTACAATGGTGC
* * * * * * * * *
3257756 CAATGTGCTGATCCAAGGCTAGCGACATTTGACTTAAAGATTGTAAGGGTACAAATCTTCTAATC
65 CAATGTACTGATCCAAGGCTAGCGACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATT
*
3257821 CAAGGCCAGC-ATCATTGGACTTAAAGAT
130 CAAGACCAGCGA-CATTGGACTTAAAGAT
3257849 TATGAGGGTT
Statistics
Matches: 960, Mismatches: 192, Indels: 86
0.78 0.16 0.07
Matches are distributed among these distances:
198 2 0.00
200 2 0.00
202 2 0.00
203 99 0.10
204 108 0.11
205 7 0.01
206 72 0.08
207 162 0.17
208 117 0.12
209 37 0.04
210 1 0.00
211 3 0.00
212 269 0.28
213 1 0.00
214 1 0.00
215 2 0.00
216 58 0.06
217 17 0.02
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (212 bp):
GGTGCCAATGTGCTAATCCAAGGCAGTGACATCGGACTTAAAGATGATAAAGGTACAATGGTGCC
AATGTACTGATCCAAGGCTAGCGACATTGGACTTAAAGATTATAAGGGTGCCAATGTGCTGATTC
AAGACCAGCGACATTGGACTTAAAGATAAGGGTGCCAATGTGCTGATTCATGGTTAGCGACACTA
GTCTTAGAGATGGCAAT
Found at i:3258286 original size:473 final size:472
Alignment explanation
Indices: 3257545--3258476 Score: 1372
Period size: 473 Copynumber: 2.0 Consensus size: 472
3257535 GATTATACGT
* * * * *
3257545 GTGCCAATGTGCTGATCCAAGCCCAACGACATTAGACCCAAAGATTATAAGGGTGCTAATGTGCT
1 GTGCCAATGTACTGATCCAAGCCAAACAACATTAGACCCAAAGATTATAAAGGTGCCAATGTGCT
* *
3257610 GATTCAAGGCCAGCGACTATGGACTTAAAGATGATAAGGTTTCCAATGTGCTGATTTATGGCCAA
66 GATTCAAGGCCAGCGACTATGGACTTAAAGATGATAAGGTTGCCAATGTGCTGATTGATGGCCAA
* * * * * * **
3257675 CGTCACTGGTCTTAGAGATGCAAAGGTGCTAATGTGCTAATCCAAGGCTAGTGACATTGGACTTA
131 CGACACTGGACTCAAAGATGCAAAGGTGCCAATGTGCTAATCCAAGGCCAGCAACATTGGACTTA
* * * *
3257740 ATGATGATAGAGGTGCCAATGTGCTGATCCAAGGCTAGCGACATTTGACTTAAAGATTGTAAGGG
196 ATGATGATAAAGATGCCAATATGCTGATCCAAGGCTAGCGACATTTGACTTAAAGATTATAAGGG
* *
3257805 TACAAATCTTCTAATCCAAGGCCAGCATCATTGGACTTAAAGATTATGAGGGTTCCAATCTGTTG
261 TACAAATCTTCTAATCCAAGGCCAGCATCATTGGACTTAAAGATTATGAGGGTGCCAATCTGTTA
*
3257870 ATTCAAGACCGGCAACATTGGACTTAAGATAAGGGTGCCAATGTGCTAATTCATGGCTAGCGACA
326 ATTCAAGACCGACAACATTGGACTTAAGATAAGGGTGCCAATGTGCTAATTCATGGCTAGCGACA
*
3257935 CTGGTCTTAGAGATGACAAAGATGCCAATTTGCTAATCCAAGGCCATCGACATTGGACTTAAAGG
391 CTGGTCTTAGAGATGACAAAGATGCCAATTTGCTAATCCAAGGCCAACGACATTGGACTTAAAGG
3258000 TGATAAAGGTGCCAATG
456 TGATAAAGGTGCCAATG
* * **
3258017 GTGCCAATGTACTGATCCAAGGCAAACAACATTGGACTTAAAGATTATAAAGGTGCCAATGTGCT
1 GTGCCAATGTACTGATCCAAGCCAAACAACATTAGACCCAAAGATTATAAAGGTGCCAATGTGCT
* *
3258082 GATTTAAGGCTAGCGA-TATTGGACTTAAAGATGATAAAGG-TGCCAATGTGCTGATCTGA-GGC
66 GATTCAAGGCCAGCGACTA-TGGACTTAAAGATGAT-AAGGTTGCCAATGTGCTGAT-TGATGGC
* * * * **
3258144 TAACGACATTGGACTCAAAGAT-TATAAGGGTGCCAATGTGCTGATTTAAGGCCAGCAACATTGG
128 CAACGACACTGGACTCAAAGATGCA-AA-GGTGCCAATGTGCTAATCCAAGGCCAGCAACATTGG
*
3258208 ACTTGAA-GATGATAAAGATGCCATTATGCTGATCCAAGGAC-AGCGACATTTGACTTAAAGATT
191 ACTT-AATGATGATAAAGATGCCAATATGCTGATCCAAGG-CTAGCGACATTTGACTTAAAGATT
* * * * *
3258271 ATAAGGGTGCAAATCTTTTGATCCAAGGCCAGCGTCATTGGACTTAAAGATTTTGAGGGTGCCAA
254 ATAAGGGTACAAATCTTCTAATCCAAGGCCAGCATCATTGGACTTAAAGATTATGAGGGTGCCAA
3258336 TCTGTTAATTCAAGACCGACAACATTGGACTTAAGATAAGGGTGCCAATGTGCTAATTCATGGCT
319 TCTGTTAATTCAAGACCGACAACATTGGACTTAAGATAAGGGTGCCAATGTGCTAATTCATGGCT
* *
3258401 AGTGACACTGGTCTTAGAGATGACAAAGATGCCAATTTGCTGATCCAAGGCCAACGACATTGGAC
384 AGCGACACTGGTCTTAGAGATGACAAAGATGCCAATTTGCTAATCCAAGGCCAACGACATTGGAC
3258466 TTAAAGGTGAT
449 TTAAAGGTGAT
3258477 GATGAAAACC
Statistics
Matches: 410, Mismatches: 43, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
471 3 0.01
472 121 0.30
473 283 0.69
474 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (472 bp):
GTGCCAATGTACTGATCCAAGCCAAACAACATTAGACCCAAAGATTATAAAGGTGCCAATGTGCT
GATTCAAGGCCAGCGACTATGGACTTAAAGATGATAAGGTTGCCAATGTGCTGATTGATGGCCAA
CGACACTGGACTCAAAGATGCAAAGGTGCCAATGTGCTAATCCAAGGCCAGCAACATTGGACTTA
ATGATGATAAAGATGCCAATATGCTGATCCAAGGCTAGCGACATTTGACTTAAAGATTATAAGGG
TACAAATCTTCTAATCCAAGGCCAGCATCATTGGACTTAAAGATTATGAGGGTGCCAATCTGTTA
ATTCAAGACCGACAACATTGGACTTAAGATAAGGGTGCCAATGTGCTAATTCATGGCTAGCGACA
CTGGTCTTAGAGATGACAAAGATGCCAATTTGCTAATCCAAGGCCAACGACATTGGACTTAAAGG
TGATAAAGGTGCCAATG
Found at i:3260121 original size:12 final size:11
Alignment explanation
Indices: 3260099--3260174 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3260089 AGAGAAAGAA
*
3260099 GAGAGAGGAGG
1 GAGATAGGAGG
3260110 GATGATAGGAGG
1 GA-GATAGGAGG
*
3260122 AGAGACAGGA--
1 -GAGATAGGAGG
*
3260132 GAGATAGTA--
1 GAGATAGGAGG
3260141 GAGATAGGAGG
1 GAGATAGGAGG
3260152 GATGATAGGAGG
1 GA-GATAGGAGG
*
3260164 AGAGACAGGAG
1 -GAGATAGGAG
3260175 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:3260131 original size:24 final size:24
Alignment explanation
Indices: 3260098--3260183 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3260088 AAGAGAAAGA
*
3260098 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
3260122 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
3260140 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
3260164 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
3260184 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:3260150 original size:42 final size:42
Alignment explanation
Indices: 3260089--3260211 Score: 192
Period size: 42 Copynumber: 2.9 Consensus size: 42
3260079 TAGCCCTCAA
* *
3260089 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
3260131 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
3260173 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAAGAGA
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGG-AGAGA
3260212 GAAGAAGATG
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
42 69 0.93
43 5 0.07
ACGTcount: A:0.44, C:0.02, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:3265100 original size:52 final size:52
Alignment explanation
Indices: 3265035--3265451 Score: 320
Period size: 52 Copynumber: 8.0 Consensus size: 52
3265025 AGGTGCCAAT
* *
3265035 GGTGCCAATGTGCTGATCCAAGGCTAACAACATTGGACTTAAAGATTATAAA
1 GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATTATAAA
** * * * *
3265087 GGTGCCAATGTGCTGATTTAAGGCTAGCGATATTAGACTTAAAGATTATAAA
1 GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATTATAAA
* ** ** *
3265139 GGTACCAATGTGCTGATCCAAGGCCAGTGACATTGGACTCGAAGATGATAAA
1 GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATTATAAA
* * * * * * * * *
3265191 GGTGCCATTGTGCTTAATGCATGGCCAATGACATTTGACCTAAA-TTTGATAAC
1 GGTGCCAATGTGC-TGATCCAAGGCCAACGACATTGGACTTAAAGATT-ATAAA
* * * * * * * * * * *
3265244 GGTGCCAATCTGTTTATCTAAGGCTAGCAATATTAGATTTAAAGATTAT-AC
1 GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATTATAAA
* ** *
3265295 GTGTGCCAATCTGCTGATCCAAGGCCAACGACATTGGACCCAAAGATTATAAT
1 G-GTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATTATAAA
* * ** * *
3265348 GGTGCTAATGTG-TCGATTCGAA-GCCAGTGACATTGGACTTAAAGATAATAAG
1 GGTGCCAATGTGCT-GA-TCCAAGGCCAACGACATTGGACTTAAAGATTATAAA
* * * * *
3265400 GGTGCCAATGTGCTAATCCATGGCCAACGACATTGGTCCTAAAGATGATAAA
1 GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATTATAAA
3265452 TTTTGACAAG
Statistics
Matches: 280, Mismatches: 76, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
51 7 0.03
52 228 0.81
53 45 0.16
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (52 bp):
GGTGCCAATGTGCTGATCCAAGGCCAACGACATTGGACTTAAAGATTATAAA
Found at i:3265406 original size:209 final size:208
Alignment explanation
Indices: 3265035--3265442 Score: 480
Period size: 209 Copynumber: 2.0 Consensus size: 208
3265025 AGGTGCCAAT
* * *
3265035 GGTGCCAATGTGCTGATCCAAGGCTAACAACATTGGACTTAAAGATTATAAAGGTGCCAATGTGC
1 GGTGCCAATCTGCTGATCCAAGGCTAACAACATTAGACTTAAAGATTATAAAGGTGCCAATCTGC
** * * * **
3265100 TGATTTAAGGCTAGCGATATTAGACTTAAAGATTATAAAGGTACCAATGTGCTGATCCAAGGCCA
66 TGATCCAAGGCCAACGACATTAGACCCAAAGATTATAAAGGTACCAATGTGCTGATCCAAGGCCA
* * * * * *
3265165 GTGACATTGGACTCGAAGATGATAAAGGTGCCATTGTGCTTAATGCATGGCCAATGACATTTGAC
131 GTGACATTGGACTCAAAGATAATAAAGGTGCCAATGTGC-TAATCCATGGCCAACGACATTGGAC
3265230 CTAAATTTGATAAC
195 CTAAATTTGATAAC
* * * * * * *
3265244 GGTGCCAATCTGTTTATCTAAGGCTAGCAATATTAGATTTAAAGATTAT-ACGTGTGCCAATCTG
1 GGTGCCAATCTGCTGATCCAAGGCTAACAACATTAGACTTAAAGATTATAAAG-GTGCCAATCTG
* * * * *
3265308 CTGATCCAAGGCCAACGACATTGGACCCAAAGATTATAATGGTGCTAATGTG-TCGATTCGAA-G
65 CTGATCCAAGGCCAACGACATTAGACCCAAAGATTATAAAGGTACCAATGTGCT-GA-TCCAAGG
* *
3265371 CCAGTGACATTGGACTTAAAGATAATAAGGGTGCCAATGTGCTAATCCATGGCCAACGACATTGG
128 CCAGTGACATTGGACTCAAAGATAATAAAGGTGCCAATGTGCTAATCCATGGCCAACGACATTGG
*
3265436 TCCTAAA
193 ACCTAAA
3265443 GATGATAAAT
Statistics
Matches: 165, Mismatches: 31, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
208 29 0.18
209 132 0.80
210 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (208 bp):
GGTGCCAATCTGCTGATCCAAGGCTAACAACATTAGACTTAAAGATTATAAAGGTGCCAATCTGC
TGATCCAAGGCCAACGACATTAGACCCAAAGATTATAAAGGTACCAATGTGCTGATCCAAGGCCA
GTGACATTGGACTCAAAGATAATAAAGGTGCCAATGTGCTAATCCATGGCCAACGACATTGGACC
TAAATTTGATAAC
Found at i:3265818 original size:27 final size:28
Alignment explanation
Indices: 3265794--3265848 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
3265784 TGATTCCATT
*
3265794 GGGATTGTAGGCTATTCAAACTCCACTG
1 GGGATTGTAGGCTATACAAACTCCACTG
* * *
3265822 GGGCTTGTAGGTTATACAAACTTCACT
1 GGGATTGTAGGCTATACAAACTCCACT
3265849 AGGATATGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (28 bp):
GGGATTGTAGGCTATACAAACTCCACTG
Found at i:3276507 original size:12 final size:11
Alignment explanation
Indices: 3276485--3276560 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3276475 AGAGAAAGAA
*
3276485 GAGAGAGGAGG
1 GAGATAGGAGG
3276496 GATGATAGGAGG
1 GA-GATAGGAGG
*
3276508 AGAGACAGGA--
1 -GAGATAGGAGG
*
3276518 GAGATAGTA--
1 GAGATAGGAGG
3276527 GAGATAGGAGG
1 GAGATAGGAGG
3276538 GATGATAGGAGG
1 GA-GATAGGAGG
*
3276550 AGAGACAGGAG
1 -GAGATAGGAG
3276561 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:3276517 original size:24 final size:24
Alignment explanation
Indices: 3276484--3276569 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3276474 AAGAGAAAGA
*
3276484 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
3276508 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
3276526 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
3276550 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
3276570 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:3276536 original size:42 final size:42
Alignment explanation
Indices: 3276475--3276597 Score: 192
Period size: 42 Copynumber: 2.9 Consensus size: 42
3276465 TAGCCCTCAA
* *
3276475 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
3276517 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
3276559 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAAGAGA
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGG-AGAGA
3276598 GAAGAAGATG
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
42 69 0.93
43 5 0.07
ACGTcount: A:0.44, C:0.02, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:3285794 original size:42 final size:42
Alignment explanation
Indices: 3285737--3285816 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
3285727 TTCTTCTCTC
* * * *
3285737 CTCCTCCTGTTATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
3285779 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCT
3285817 CCTATCATCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.10, C:0.45, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
Found at i:3285796 original size:12 final size:11
Alignment explanation
Indices: 3285770--3285836 Score: 57
Period size: 12 Copynumber: 5.9 Consensus size: 11
3285760 TCTATTATCT
*
3285770 CTCCTGTCTCTC
1 CTCCTATCTC-C
3285782 CTCCTATCATCC
1 CTCCTATC-TCC
3285794 CTCCTATCT--
1 CTCCTATCTCC
*
3285803 CTACTATCTCTC
1 CTCCTATCTC-C
3285815 CTCCTATCATCC
1 CTCCTATC-TCC
*
3285827 CTCCTCTCTC
1 CTCCTATCTC
3285837 TTCTTTCTCT
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
9 8 0.17
11 3 0.07
12 31 0.67
13 4 0.09
ACGTcount: A:0.10, C:0.49, G:0.01, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:3285802 original size:33 final size:33
Alignment explanation
Indices: 3285765--3285846 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
3285755 CTCTCTCTAT
* *
3285765 TATCTCTCCTGTCTCTCCTCCTATCATCCCTCC
1 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
3285798 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
1 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
* * *
3285831 TCTCTCTTCTTTCTCT
1 TATCTCTACTATCTCT
3285847 TTAAGGGCTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.10, C:0.45, G:0.01, T:0.44
Consensus pattern (33 bp):
TATCTCTACTATCTCTCCTCCTATCATCCCTCC
Found at i:3293119 original size:44 final size:44
Alignment explanation
Indices: 3293070--3293206 Score: 265
Period size: 44 Copynumber: 3.1 Consensus size: 44
3293060 ACATTAACAC
3293070 AAACCCTAATGGACTTATTGTGCTTACAAGCCCAATTCTTAATT
1 AAACCCTAATGGACTTATTGTGCTTACAAGCCCAATTCTTAATT
3293114 AAACCCTAATGGACTTATTGTGCTTACAAGCCCAATTCTTAATT
1 AAACCCTAATGGACTTATTGTGCTTACAAGCCCAATTCTTAATT
*
3293158 AAACCCTAATGGACTTATTGTGCTAACAAGCCCAATTCTTAATT
1 AAACCCTAATGGACTTATTGTGCTTACAAGCCCAATTCTTAATT
3293202 AAACC
1 AAACC
3293207 AAAATAACAA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
44 92 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (44 bp):
AAACCCTAATGGACTTATTGTGCTTACAAGCCCAATTCTTAATT
Found at i:3297787 original size:18 final size:18
Alignment explanation
Indices: 3297741--3297790 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
3297731 TCCATTTTCT
*
3297741 TCTCTCCT-TCTCCTGTTA
1 TCTCTCCTCTCT-CTATTA
* *
3297759 TCCCTCTTCTCTCTATTA
1 TCTCTCCTCTCTCTATTA
3297777 TCTCTCCTCTCTCT
1 TCTCTCCTCTCTCT
3297791 CCTCCTATCA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 23 0.88
19 3 0.12
ACGTcount: A:0.06, C:0.42, G:0.02, T:0.50
Consensus pattern (18 bp):
TCTCTCCTCTCTCTATTA
Found at i:3298399 original size:22 final size:22
Alignment explanation
Indices: 3298374--3298427 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
3298364 TTAATGACAT
3298374 AATAATGATTAGAATCAAATCA
1 AATAATGATTAGAATCAAATCA
3298396 AATAATGATTAGAATCAAATCA
1 AATAATGATTAGAATCAAATCA
*
3298418 AATAAAGATT
1 AATAATGATT
3298428 CAATCTTGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.56, C:0.07, G:0.09, T:0.28
Consensus pattern (22 bp):
AATAATGATTAGAATCAAATCA
Found at i:3298514 original size:21 final size:22
Alignment explanation
Indices: 3298483--3298524 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
3298473 TTAAAAAATT
3298483 TTTTGTTTGTATTCTTTCTTCC
1 TTTTGTTTGTATTCTTTCTTCC
3298505 TTTT-TTTGTATTCTTTCTTC
1 TTTTGTTTGTATTCTTTCTTC
3298525 TTCTTCTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.05, C:0.17, G:0.07, T:0.71
Consensus pattern (22 bp):
TTTTGTTTGTATTCTTTCTTCC
Found at i:3298522 original size:25 final size:24
Alignment explanation
Indices: 3298481--3298527 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
3298471 TTTTAAAAAA
*
3298481 TTTTTTGTTTGTATTCTTTCTTCCT
1 TTTTTTGTTTCTATTC-TTCTTCCT
3298506 TTTTTTGTATTCT-TTCTTCTTC
1 TTTTTTGT-TTCTATTCTTCTTC
3298528 TTCTTCTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 6 0.30
25 11 0.55
26 3 0.15
ACGTcount: A:0.04, C:0.17, G:0.06, T:0.72
Consensus pattern (24 bp):
TTTTTTGTTTCTATTCTTCTTCCT
Found at i:3299111 original size:44 final size:44
Alignment explanation
Indices: 3299062--3299148 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 44
3299052 TAACACAAAC
*
3299062 CCTAATGGACTTATTGTGCTTACAAGCCCAATTCTTAATTAAAT
1 CCTAATGGACTTATTGTGCTAACAAGCCCAATTCTTAATTAAAT
3299106 CCTAATGGACTTATTGTGCTAACAAGCCCAATTCTTAATTAAA
1 CCTAATGGACTTATTGTGCTAACAAGCCCAATTCTTAATTAAA
3299149 CCAAAATAAC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (44 bp):
CCTAATGGACTTATTGTGCTAACAAGCCCAATTCTTAATTAAAT
Found at i:3310303 original size:42 final size:42
Alignment explanation
Indices: 3310251--3310369 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3310241 TTCTTCTCTC
**
3310251 CTCCTCCTATCATCCCTCCTCTCTCTGTTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
3310293 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
3310335 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3310370 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3312988 original size:42 final size:42
Alignment explanation
Indices: 3312933--3313051 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3312923 TTCTTCTCTC
* *
3312933 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
3312975 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
3313017 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3313052 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3312992 original size:12 final size:11
Alignment explanation
Indices: 3312966--3313041 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3312956 TCTATTATCT
*
3312966 CTCCTGTCTCTC
1 CTCCTATCTC-C
3312978 CTCCTATCATCC
1 CTCCTATC-TCC
3312990 CTCCTATCT--
1 CTCCTATCTCC
*
3312999 CTACTATCT--
1 CTCCTATCTCC
*
3313008 CTCCTGTCTCTC
1 CTCCTATCTC-C
3313020 CTCCTATCATCC
1 CTCCTATC-TCC
*
3313032 CTCCTCTCTC
1 CTCCTATCTC
3313042 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:3312993 original size:24 final size:24
Alignment explanation
Indices: 3312957--3313042 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3312947 CCTCCTCTCT
* *
3312957 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
3312981 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
3313002 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
3313023 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
3313043 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:3313017 original size:18 final size:18
Alignment explanation
Indices: 3312948--3313018 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
3312938 CCTGTCATCC
* *
3312948 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
3312966 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
3312988 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
3313008 CTCCTGTCTCT
1 CTCCTGTCTCT
3313019 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:3315622 original size:12 final size:12
Alignment explanation
Indices: 3315602--3315660 Score: 77
Period size: 12 Copynumber: 4.9 Consensus size: 12
3315592 AAGAGAAAGA
3315602 AGAGATAGGAGG
1 AGAGATAGGAGG
3315614 -GATGATAGGAGG
1 AGA-GATAGGAGG
3315626 AGAGATAGGATGG
1 AGAGATAGGA-GG
*
3315639 A-TGATAGGAGG
1 AGAGATAGGAGG
3315650 AGAGATAGGAG
1 AGAGATAGGAG
3315661 AGATAACAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
11 5 0.12
12 31 0.76
13 5 0.12
ACGTcount: A:0.39, C:0.00, G:0.47, T:0.14
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:3315633 original size:24 final size:24
Alignment explanation
Indices: 3315602--3315660 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
3315592 AAGAGAAAGA
3315602 AGAGATAGGAGGGATGATAGGAGG
1 AGAGATAGGAGGGATGATAGGAGG
*
3315626 AGAGATAGGATGGATGATAGGAGG
1 AGAGATAGGAGGGATGATAGGAGG
3315650 AGAGATAGGAG
1 AGAGATAGGAG
3315661 AGATAACAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.39, C:0.00, G:0.47, T:0.14
Consensus pattern (24 bp):
AGAGATAGGAGGGATGATAGGAGG
Found at i:3315677 original size:18 final size:18
Alignment explanation
Indices: 3315650--3315694 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
3315640 TGATAGGAGG
*
3315650 AGAGATAGGAGAGATAAC
1 AGAGAGAGGAGAGATAAC
* *
3315668 AGAGAGAGGAGGGATGAC
1 AGAGAGAGGAGAGATAAC
3315686 AGAGGAGAG
1 AGA-GAGAG
3315695 AAGAAGATGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.44, C:0.04, G:0.44, T:0.07
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAC
Found at i:3328730 original size:42 final size:42
Alignment explanation
Indices: 3328678--3328796 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3328668 TTCTTCTCTC
**
3328678 CTCCTCCTATCATCCCTCCTCTCTCTGTTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
3328720 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
3328762 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3328797 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3333819 original size:18 final size:19
Alignment explanation
Indices: 3333777--3333826 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
3333767 TCCATCTTCT
3333777 TCTCTCCTC-CTCTTGTCA
1 TCTCTCCTCTCTCTTGTCA
*
3333795 TCGCTCCTCTCTCTAT-T-A
1 TCTCTCCTCTCTCT-TGTCA
*
3333813 TCTCTCCTATCTCT
1 TCTCTCCTCTCTCT
3333827 CCTCCTATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 21 0.78
19 5 0.19
20 1 0.04
ACGTcount: A:0.08, C:0.42, G:0.04, T:0.46
Consensus pattern (19 bp):
TCTCTCCTCTCTCTTGTCA
Found at i:3333831 original size:12 final size:12
Alignment explanation
Indices: 3333816--3333874 Score: 77
Period size: 12 Copynumber: 4.9 Consensus size: 12
3333806 TCTATTATCT
3333816 CTCCTATCTCTC
1 CTCCTATCTCTC
3333828 CTCCTATCATC-C
1 CTCCTATC-TCTC
*
3333840 CTCTTATCTCTC
1 CTCCTATCTCTC
3333852 CTCCTATCATC-C
1 CTCCTATC-TCTC
3333864 CTCCTATCTCT
1 CTCCTATCTCT
3333875 TTTTTCTCTT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
11 4 0.10
12 33 0.80
13 4 0.10
ACGTcount: A:0.12, C:0.47, G:0.00, T:0.41
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:3333847 original size:24 final size:24
Alignment explanation
Indices: 3333807--3333874 Score: 109
Period size: 24 Copynumber: 2.8 Consensus size: 24
3333797 GCTCCTCTCT
* *
3333807 CTATTATCTCTCCTATCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
*
3333831 CTATCATCCCTCTTATCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
3333855 CTATCATCCCTCCTATCTCT
1 CTATCATCCCTCCTATCTCT
3333875 TTTTTCTCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.13, C:0.44, G:0.00, T:0.43
Consensus pattern (24 bp):
CTATCATCCCTCCTATCTCTCCTC
Found at i:3338619 original size:12 final size:11
Alignment explanation
Indices: 3338600--3338675 Score: 79
Period size: 12 Copynumber: 6.9 Consensus size: 11
3338590 AAAGAAAAAA
3338600 GAGATAGGAGG
1 GAGATAGGAGG
3338611 GATGATAGGAGG
1 GA-GATAGGAGG
3338623 AGAGATAGGA--
1 -GAGATAGGAGG
*
3338633 GAGATAGTA--
1 GAGATAGGAGG
3338642 GAGATAGGAGG
1 GAGATAGGAGG
3338653 GATGATAGGAGG
1 GA-GATAGGAGG
3338665 AGAGATAGGAG
1 -GAGATAGGAG
3338676 AGATAATAGA
Statistics
Matches: 57, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
9 16 0.28
11 4 0.07
12 33 0.58
13 4 0.07
ACGTcount: A:0.39, C:0.00, G:0.47, T:0.13
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:3338634 original size:9 final size:9
Alignment explanation
Indices: 3338620--3338680 Score: 65
Period size: 9 Copynumber: 7.1 Consensus size: 9
3338610 GGATGATAGG
3338620 AGGAGAGAT
1 AGGAGAGAT
3338629 AGGAGAGAT
1 AGGAGAGAT
*
3338638 AGTAGAGAT
1 AGGAGAGAT
*
3338647 AGGAGGGAT
1 AGGAGAGAT
* *
3338656 --GATAG-G
1 AGGAGAGAT
3338662 AGGAGAGAT
1 AGGAGAGAT
3338671 AGGAGAGAT
1 AGGAGAGAT
3338680 A
1 A
3338681 ATAGAAAGAG
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
7 3 0.07
8 4 0.10
9 34 0.83
ACGTcount: A:0.43, C:0.00, G:0.44, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:3338658 original size:42 final size:42
Alignment explanation
Indices: 3338599--3338708 Score: 175
Period size: 42 Copynumber: 2.6 Consensus size: 42
3338589 AAAAGAAAAA
*
3338599 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAGT
1 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAAT
3338641 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAAT
1 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAAT
* * * *
3338683 AGAAAGAGGAGGGATGACATGAGGAG
1 AGAGATAGGAGGGATGATAGGAGGAG
3338709 GAGAAAGAAG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.42, C:0.01, G:0.45, T:0.13
Consensus pattern (42 bp):
AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAAT
Found at i:3338684 original size:12 final size:12
Alignment explanation
Indices: 3338602--3338684 Score: 56
Period size: 12 Copynumber: 7.4 Consensus size: 12
3338592 AGAAAAAAGA
*
3338602 GATAGGAGGGAT
1 GATAGGAGAGAT
3338614 GATAGGAGGAGA-
1 GATAGGA-GAGAT
3338626 GATA-G-GAGA-
1 GATAGGAGAGAT
*
3338635 GATA-G-TAGA-
1 GATAGGAGAGAT
*
3338644 GATAGGAGGGAT
1 GATAGGAGAGAT
3338656 GATAGGAGGAGA-
1 GATAGGA-GAGAT
3338668 GATAGGAGAGAT
1 GATAGGAGAGAT
*
3338680 AATAG
1 GATAG
3338685 AAAGAGGAGG
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
9 16 0.27
10 1 0.02
11 7 0.12
12 29 0.49
13 6 0.10
ACGTcount: A:0.41, C:0.00, G:0.45, T:0.14
Consensus pattern (12 bp):
GATAGGAGAGAT
Found at i:3344335 original size:322 final size:322
Alignment explanation
Indices: 3343750--3344397 Score: 1296
Period size: 322 Copynumber: 2.0 Consensus size: 322
3343740 ATCCAGAGAG
3343750 GATTCACCACTCCTAGTGAAAATTGGAGATATATCCCAAATGATCTTAACTATGTCTAAATGGAT
1 GATTCACCACTCCTAGTGAAAATTGGAGATATATCCCAAATGATCTTAACTATGTCTAAATGGAT
3343815 TAAAGTTTTAAGCCAGAGCATAGTGAGTTATGAGGAATTGTTCCTCATAGATTCATGATCATTAA
66 TAAAGTTTTAAGCCAGAGCATAGTGAGTTATGAGGAATTGTTCCTCATAGATTCATGATCATTAA
3343880 GTATATGTCGTAAGATCTAATATGGATTTAAGCATAAGTAAACCCTGAACCATGCTCATGCTCAT
131 GTATATGTCGTAAGATCTAATATGGATTTAAGCATAAGTAAACCCTGAACCATGCTCATGCTCAT
3343945 CCTGGGATATATAGTGAAAGGACCGTATTAGGCTAGTTACTAAAAAGTTTCAATGAGATCACATC
196 CCTGGGATATATAGTGAAAGGACCGTATTAGGCTAGTTACTAAAAAGTTTCAATGAGATCACATC
3344010 GACTCTTCAACAGTTGGCTGGTCATGGTGGGTTGCTAGATGTCACTCTTGATCTATGGACTT
261 GACTCTTCAACAGTTGGCTGGTCATGGTGGGTTGCTAGATGTCACTCTTGATCTATGGACTT
3344072 GATTCACCACTCCTAGTGAAAATTGGAGATATATCCCAAATGATCTTAACTATGTCTAAATGGAT
1 GATTCACCACTCCTAGTGAAAATTGGAGATATATCCCAAATGATCTTAACTATGTCTAAATGGAT
3344137 TAAAGTTTTAAGCCAGAGCATAGTGAGTTATGAGGAATTGTTCCTCATAGATTCATGATCATTAA
66 TAAAGTTTTAAGCCAGAGCATAGTGAGTTATGAGGAATTGTTCCTCATAGATTCATGATCATTAA
3344202 GTATATGTCGTAAGATCTAATATGGATTTAAGCATAAGTAAACCCTGAACCATGCTCATGCTCAT
131 GTATATGTCGTAAGATCTAATATGGATTTAAGCATAAGTAAACCCTGAACCATGCTCATGCTCAT
3344267 CCTGGGATATATAGTGAAAGGACCGTATTAGGCTAGTTACTAAAAAGTTTCAATGAGATCACATC
196 CCTGGGATATATAGTGAAAGGACCGTATTAGGCTAGTTACTAAAAAGTTTCAATGAGATCACATC
3344332 GACTCTTCAACAGTTGGCTGGTCATGGTGGGTTGCTAGATGTCACTCTTGATCTATGGACTT
261 GACTCTTCAACAGTTGGCTGGTCATGGTGGGTTGCTAGATGTCACTCTTGATCTATGGACTT
3344394 GATT
1 GATT
3344398 AATAAGATTA
Statistics
Matches: 326, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
322 326 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (322 bp):
GATTCACCACTCCTAGTGAAAATTGGAGATATATCCCAAATGATCTTAACTATGTCTAAATGGAT
TAAAGTTTTAAGCCAGAGCATAGTGAGTTATGAGGAATTGTTCCTCATAGATTCATGATCATTAA
GTATATGTCGTAAGATCTAATATGGATTTAAGCATAAGTAAACCCTGAACCATGCTCATGCTCAT
CCTGGGATATATAGTGAAAGGACCGTATTAGGCTAGTTACTAAAAAGTTTCAATGAGATCACATC
GACTCTTCAACAGTTGGCTGGTCATGGTGGGTTGCTAGATGTCACTCTTGATCTATGGACTT
Found at i:3351821 original size:24 final size:24
Alignment explanation
Indices: 3351785--3351870 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
3351775 CCTCCTCTTT
* *
3351785 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
3351809 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
*
3351830 CTATC-T--CTCTTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
3351851 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
3351871 TTTTTCTCTT
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
18 3 0.06
20 5 0.11
21 14 0.30
22 5 0.11
24 20 0.43
ACGTcount: A:0.10, C:0.44, G:0.02, T:0.43
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:3351879 original size:42 final size:42
Alignment explanation
Indices: 3351748--3351879 Score: 176
Period size: 42 Copynumber: 3.1 Consensus size: 42
3351738 TCACTCTTCC
* * *
3351748 ATCT-TCTTCTCTCCTCCTCCTGTCATCCCTCCTCTTTCTATT
1 ATCTCTCTTGTCT-CTCCTCCTATCATCCCTCCTCTCTCTATT
* * *
3351790 ATCTCTCCTGTCTCTCCTCCTATCATCCCTCCTATCTCTACT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTATT
*
3351832 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTTTT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTATT
*
3351874 TTCTCT
1 ATCTCT
3351880 TTGAGGGCTA
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 72 0.92
43 6 0.08
ACGTcount: A:0.08, C:0.43, G:0.02, T:0.46
Consensus pattern (42 bp):
ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTATT
Found at i:3352657 original size:17 final size:19
Alignment explanation
Indices: 3352626--3352660 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
3352616 TTTTTTTTTC
3352626 CTTTCTTTTTGTATTCTTT
1 CTTTCTTTTTGTATTCTTT
3352645 CTTT-TTTTT-TATTCTT
1 CTTTCTTTTTGTATTCTT
3352661 GAAAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 5 0.31
19 4 0.25
ACGTcount: A:0.06, C:0.14, G:0.03, T:0.77
Consensus pattern (19 bp):
CTTTCTTTTTGTATTCTTT
Found at i:3363280 original size:24 final size:24
Alignment explanation
Indices: 3363244--3363329 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
3363234 CCTCCTCTTT
* *
3363244 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
3363268 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
*
3363289 CTATC-T--CTCTTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
3363310 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
3363330 TTTTTCTCTT
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
18 3 0.06
20 5 0.11
21 14 0.30
22 5 0.11
24 20 0.43
ACGTcount: A:0.10, C:0.44, G:0.02, T:0.43
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:3363338 original size:42 final size:42
Alignment explanation
Indices: 3363207--3363338 Score: 176
Period size: 42 Copynumber: 3.1 Consensus size: 42
3363197 TCACTCTTCC
* * *
3363207 ATCT-TCTTCTCTCCTCCTCCTGTCATCCCTCCTCTTTCTATT
1 ATCTCTCTTGTCT-CTCCTCCTATCATCCCTCCTCTCTCTATT
* * *
3363249 ATCTCTCCTGTCTCTCCTCCTATCATCCCTCCTATCTCTACT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTATT
*
3363291 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTTTT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTATT
*
3363333 TTCTCT
1 ATCTCT
3363339 TTGAGGGCTA
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 72 0.92
43 6 0.08
ACGTcount: A:0.08, C:0.43, G:0.02, T:0.46
Consensus pattern (42 bp):
ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTATT
Found at i:3364117 original size:18 final size:19
Alignment explanation
Indices: 3364085--3364120 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
3364075 TTTTTTTTTC
3364085 CTTTCTTTTTGTATTCTTT
1 CTTTCTTTTTGTATTCTTT
*
3364104 CTTT-TTTTTTTATTCTT
1 CTTTCTTTTTGTATTCTT
3364121 GAAAAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.06, C:0.14, G:0.03, T:0.78
Consensus pattern (19 bp):
CTTTCTTTTTGTATTCTTT
Found at i:3372009 original size:42 final size:42
Alignment explanation
Indices: 3371954--3372072 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3371944 TTCTTCTCTC
* *
3371954 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
3371996 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
3372038 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3372073 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3372013 original size:12 final size:11
Alignment explanation
Indices: 3371987--3372062 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3371977 TCTATTATCT
*
3371987 CTCCTGTCTCTC
1 CTCCTATCTC-C
3371999 CTCCTATCATCC
1 CTCCTATC-TCC
3372011 CTCCTATCT--
1 CTCCTATCTCC
*
3372020 CTACTATCT--
1 CTCCTATCTCC
*
3372029 CTCCTGTCTCTC
1 CTCCTATCTC-C
3372041 CTCCTATCATCC
1 CTCCTATC-TCC
*
3372053 CTCCTCTCTC
1 CTCCTATCTC
3372063 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:3372014 original size:24 final size:24
Alignment explanation
Indices: 3371978--3372063 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3371968 CCTCCTCTCT
* *
3371978 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
3372002 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
3372023 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
3372044 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
3372064 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:3372038 original size:18 final size:18
Alignment explanation
Indices: 3371969--3372039 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
3371959 CCTGTCATCC
* *
3371969 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
3371987 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
3372009 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
3372029 CTCCTGTCTCT
1 CTCCTGTCTCT
3372040 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:3379491 original size:15 final size:16
Alignment explanation
Indices: 3379457--3379495 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
3379447 ATATTGTTGG
*
3379457 ATTAAATTCAAGATTTA
1 ATTAAATTC-AGACTTA
3379474 ATTAAATTC-GACTTA
1 ATTAAATTCAGACTTA
3379489 ATTAAAT
1 ATTAAAT
3379496 AAAAGGTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 12 0.57
17 9 0.43
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (16 bp):
ATTAAATTCAGACTTA
Found at i:3381143 original size:28 final size:29
Alignment explanation
Indices: 3381102--3381171 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 29
3381092 ATCTTTATTC
* *
3381102 TTCTTTATTGATTTTTTTTCCTTTGAAAT
1 TTCTTTATTGATTTTGTTTCCTTTCAAAT
* *
3381131 TTCTTTCTT-ATTTTGTTTCCTTTCATAT
1 TTCTTTATTGATTTTGTTTCCTTTCAAAT
*
3381159 TTC-TTGTTGATTT
1 TTCTTTATTGATTT
3381172 CACTTCCTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
27 4 0.11
28 23 0.66
29 8 0.23
ACGTcount: A:0.13, C:0.13, G:0.07, T:0.67
Consensus pattern (29 bp):
TTCTTTATTGATTTTGTTTCCTTTCAAAT
Found at i:3384053 original size:12 final size:11
Alignment explanation
Indices: 3384034--3384097 Score: 55
Period size: 12 Copynumber: 5.9 Consensus size: 11
3384024 AGAGAGAGAA
3384034 GAGATAGGAGG
1 GAGATAGGAGG
3384045 GATGATAGGA--
1 GA-GATAGGAGG
*
3384055 GAGATAGTA--
1 GAGATAGGAGG
*
3384064 GAGATAGGAAG
1 GAGATAGGAGG
3384075 GATGATAGGAGG
1 GA-GATAGGAGG
3384087 AGAGATAGGAG
1 -GAGATAGGAG
3384098 AGATAATAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
9 14 0.31
10 2 0.04
11 4 0.09
12 23 0.51
13 2 0.04
ACGTcount: A:0.41, C:0.00, G:0.45, T:0.14
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:3384066 original size:9 final size:9
Alignment explanation
Indices: 3384033--3384102 Score: 50
Period size: 9 Copynumber: 6.8 Consensus size: 9
3384023 AAGAGAGAGA
3384033 AGAGATAGG
1 AGAGATAGG
3384042 AGGGATGATAGG
1 A--GA-GATAGG
*
3384054 AGAGATAGT
1 AGAGATAGG
3384063 AGAGATAGG
1 AGAGATAGG
3384072 AAGGATGATAGGAGG
1 -A-GA-GAT---AGG
3384087 AGAGATAGG
1 AGAGATAGG
3384096 AGAGATA
1 AGAGATA
3384103 ATAGAGAGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 18
0.71 0.03 0.26
Matches are distributed among these distances:
9 24 0.48
10 3 0.06
11 4 0.08
12 13 0.26
13 2 0.04
14 1 0.02
15 3 0.06
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.14
Consensus pattern (9 bp):
AGAGATAGG
Found at i:3384067 original size:30 final size:30
Alignment explanation
Indices: 3384024--3384091 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
3384014 TAGCCCTCAA
*
3384024 AGAGAGAGAAGAGATAGGAGGGATGATAGG
1 AGAGAGAGAAGAGATAGGAAGGATGATAGG
* *
3384054 AGAGATAGTAGAGATAGGAAGGATGATAGG
1 AGAGAGAGAAGAGATAGGAAGGATGATAGG
3384084 AG-GAGAGA
1 AGAGAGAGA
3384092 TAGGAGAGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
29 4 0.12
30 29 0.88
ACGTcount: A:0.44, C:0.00, G:0.44, T:0.12
Consensus pattern (30 bp):
AGAGAGAGAAGAGATAGGAAGGATGATAGG
Found at i:3384083 original size:42 final size:42
Alignment explanation
Indices: 3384024--3384130 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 42
3384014 TAGCCCTCAA
*
3384024 AGAGAGA-GAA-GA-GATAGGAGG-GATGATAGGAGAGATAGT
1 AGAGAGAGGAAGGATGATAGGAGGAGA-GATAGGAGAGATAAT
*
3384063 AGAGATAGGAAGGATGATAGGAGGAGAGATAGGAGAGATAAT
1 AGAGAGAGGAAGGATGATAGGAGGAGAGATAGGAGAGATAAT
* * *
3384105 AGAGAGAGGAGGGATCACAGGAGGAG
1 AGAGAGAGGAAGGATGATAGGAGGAG
3384131 GAGAGAAGAA
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
39 6 0.10
40 3 0.05
41 2 0.03
42 45 0.78
43 2 0.03
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.11
Consensus pattern (42 bp):
AGAGAGAGGAAGGATGATAGGAGGAGAGATAGGAGAGATAAT
Found at i:3384646 original size:107 final size:107
Alignment explanation
Indices: 3384460--3384674 Score: 421
Period size: 107 Copynumber: 2.0 Consensus size: 107
3384450 TCATACAAAG
3384460 CTTCAAGGTTTGAGGCAAGGTGGAAAAAGTCTCATTGATTATTACAAAGAAATGGAAGTTGCCAT
1 CTTCAAGGTTTGAGGCAAGGTGGAAAAAGTCTCATTGATTATTACAAAGAAATGGAAGTTGCCAT
3384525 GATAAGAGCCAATGTAATTGAAGAAAGAGAAGCAACAATGGC
66 GATAAGAGCCAATGTAATTGAAGAAAGAGAAGCAACAATGGC
*
3384567 CTTCAAGGTTTGAGGCAAGGTGGAAAAAGTGTCATTGATTATTACAAAGAAATGGAAGTTGCCAT
1 CTTCAAGGTTTGAGGCAAGGTGGAAAAAGTCTCATTGATTATTACAAAGAAATGGAAGTTGCCAT
3384632 GATAAGAGCCAATGTAATTGAAGAAAGAGAAGCAACAATGGC
66 GATAAGAGCCAATGTAATTGAAGAAAGAGAAGCAACAATGGC
3384674 C
1 C
3384675 CGTTTCTTGA
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
107 107 1.00
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.22
Consensus pattern (107 bp):
CTTCAAGGTTTGAGGCAAGGTGGAAAAAGTCTCATTGATTATTACAAAGAAATGGAAGTTGCCAT
GATAAGAGCCAATGTAATTGAAGAAAGAGAAGCAACAATGGC
Found at i:3388961 original size:12 final size:11
Alignment explanation
Indices: 3388939--3389014 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3388929 AGAAAAAGAA
*
3388939 GAGAGAGGAGG
1 GAGATAGGAGG
3388950 GATGATAGGAGG
1 GA-GATAGGAGG
*
3388962 AGAGACAGGA--
1 -GAGATAGGAGG
*
3388972 GAGATAGTA--
1 GAGATAGGAGG
3388981 GAGATAGGAGG
1 GAGATAGGAGG
3388992 GATGATAGGAGG
1 GA-GATAGGAGG
*
3389004 AGAGACAGGAG
1 -GAGATAGGAG
3389015 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:3388997 original size:42 final size:42
Alignment explanation
Indices: 3388938--3389053 Score: 196
Period size: 42 Copynumber: 2.7 Consensus size: 42
3388928 AAGAAAAAGA
*
3388938 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
3388980 AGAGATAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
3389022 AGAGAGAGGAGGGATGACAGGAGGAGGAGACA
1 AGAGAGAGGAGGGATGATAGGAGGA-GAGACA
3389054 AGAAGATGGA
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
42 63 0.91
43 6 0.09
ACGTcount: A:0.41, C:0.03, G:0.47, T:0.09
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
Found at i:3395022 original size:218 final size:218
Alignment explanation
Indices: 3394752--3395180 Score: 813
Period size: 218 Copynumber: 2.0 Consensus size: 218
3394742 TGGCCAATCT
3394752 TTTATAGCTTGAATCTTTTCCTCATCCACATGCACACCTTTAGAATTAACAACAAAGCCAAGAAA
1 TTTATAGCTTGAATCTTTTCCTCATCCACATGCACACCTTTAGAATTAACAACAAAGCCAAGAAA
*
3394817 AACTACATGATCCTTACAAAATGTGCATTTTTCAATATTCACATACAACTTTTCATGCCTCAAGA
66 AAATACATGATCCTTACAAAATGTGCATTTTTCAATATTCACATACAACTTTTCATGCCTCAAGA
3394882 CTTCCAGCACACACTTCAAATGCAACACATGCTCATCAAAAGTTTTGCTGTAAATTAAGATATCA
131 CTTCCAGCACACACTTCAAATGCAACACATGCTCATCAAAAGTTTTGCTGTAAATTAAGATATCA
3394947 TCAAAATAAACAACAAAGCCACC
196 TCAAAATAAACAACAAAGCCACC
* * *
3394970 TTTATAGCTTTAATCTTTTCCTCATCCACATGCACACCTTTATAGTTAACAACAAAGCCAAGAAA
1 TTTATAGCTTGAATCTTTTCCTCATCCACATGCACACCTTTAGAATTAACAACAAAGCCAAGAAA
*
3395035 AAATACATGATCCTTACAAAATGTGTATTTTTCAATATTCACATACAACTTTTCATGCCTCAAGA
66 AAATACATGATCCTTACAAAATGTGCATTTTTCAATATTCACATACAACTTTTCATGCCTCAAGA
3395100 CTTCCAGCACACACTTCAAATGCAACACATGCTCATCAAAAGTTTTGCTGTAAATTAAGATATCA
131 CTTCCAGCACACACTTCAAATGCAACACATGCTCATCAAAAGTTTTGCTGTAAATTAAGATATCA
3395165 TCAAAATAAACAACAA
196 TCAAAATAAACAACAA
3395181 CAAATTTGCC
Statistics
Matches: 206, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
218 206 1.00
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (218 bp):
TTTATAGCTTGAATCTTTTCCTCATCCACATGCACACCTTTAGAATTAACAACAAAGCCAAGAAA
AAATACATGATCCTTACAAAATGTGCATTTTTCAATATTCACATACAACTTTTCATGCCTCAAGA
CTTCCAGCACACACTTCAAATGCAACACATGCTCATCAAAAGTTTTGCTGTAAATTAAGATATCA
TCAAAATAAACAACAAAGCCACC
Found at i:3397423 original size:42 final size:42
Alignment explanation
Indices: 3397376--3397456 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
3397366 CTTTTTCTCT
* * *
3397376 TCTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTATC
1 TCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATC
3397418 TCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCT
1 TCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCT
3397457 CCTATCATCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.11, C:0.46, G:0.01, T:0.42
Consensus pattern (42 bp):
TCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATC
Found at i:3397425 original size:12 final size:12
Alignment explanation
Indices: 3397410--3397475 Score: 70
Period size: 12 Copynumber: 5.8 Consensus size: 12
3397400 TCTATTATCT
3397410 CTCCTATCTCTC
1 CTCCTATCTCTC
3397422 CTCCTATCATC-C
1 CTCCTATC-TCTC
3397434 CTCCTA--TCT-
1 CTCCTATCTCTC
*
3397443 CTACTATCTCTC
1 CTCCTATCTCTC
3397455 CTCCTATCATC-C
1 CTCCTATC-TCTC
3397467 CTCCTATCT
1 CTCCTATCT
3397476 TTTCTTTCTC
Statistics
Matches: 46, Mismatches: 2, Indels: 13
0.75 0.03 0.21
Matches are distributed among these distances:
9 7 0.15
11 4 0.09
12 31 0.67
13 4 0.09
ACGTcount: A:0.14, C:0.47, G:0.00, T:0.39
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:3397486 original size:33 final size:33
Alignment explanation
Indices: 3397405--3397475 Score: 133
Period size: 33 Copynumber: 2.2 Consensus size: 33
3397395 CTCTCTCTAT
*
3397405 TATCTCTCCTATCTCTCCTCCTATCATCCCTCC
1 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
3397438 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
1 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
3397471 TATCT
1 TATCT
3397476 TTTCTTTCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.14, C:0.45, G:0.00, T:0.41
Consensus pattern (33 bp):
TATCTCTACTATCTCTCCTCCTATCATCCCTCC
Found at i:3401995 original size:24 final size:23
Alignment explanation
Indices: 3401962--3402053 Score: 79
Period size: 24 Copynumber: 4.2 Consensus size: 23
3401952 AAGAGAAAGA
*
3401962 AGAGAGAGGAGGGATGATAGGAAG
1 AGAGACAGGAGGGATGATAGG-AG
*
3401986 AGAGACAGGA--GA-GATA-G-T
1 AGAGACAGGAGGGATGATAGGAG
*
3402004 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGA-G
* *
3402028 AGAGACAGGAGAGATAATA-GAG
1 AGAGACAGGAGGGATGATAGGAG
3402050 AGAG
1 AGAG
3402054 GAGGGATGAC
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
18 9 0.16
20 3 0.05
21 8 0.15
22 8 0.15
23 2 0.04
24 25 0.45
ACGTcount: A:0.43, C:0.02, G:0.45, T:0.10
Consensus pattern (23 bp):
AGAGACAGGAGGGATGATAGGAG
Found at i:3402068 original size:42 final size:42
Alignment explanation
Indices: 3401962--3402071 Score: 184
Period size: 42 Copynumber: 2.6 Consensus size: 42
3401952 AAGAGAAAGA
* *
3401962 AGAGAGAGGAGGGATGATAGGAAGAGAGACAGGAGAGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
3402004 AGAGATAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
3402046 AGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGAGAGGAGGGATGATAGGAGGAG
3402072 GAGAGAAGAA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.42, C:0.03, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
Found at i:3411977 original size:42 final size:42
Alignment explanation
Indices: 3411922--3412028 Score: 178
Period size: 42 Copynumber: 2.5 Consensus size: 42
3411912 TTCTTCTCTC
* * *
3411922 CTCCTCCTGTCATCCTTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
3411964 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
3412006 CTCCTCCTATCATCCCTCCTCTC
1 CTCCTCCTATCATCCCTCCTCTC
3412029 CCTTCTTTCT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.09, C:0.47, G:0.03, T:0.41
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3411981 original size:12 final size:11
Alignment explanation
Indices: 3411955--3412025 Score: 51
Period size: 12 Copynumber: 6.5 Consensus size: 11
3411945 TCTATTATCT
*
3411955 CTCCTGTCTCTC
1 CTCCTATCTC-C
3411967 CTCCTATCATCC
1 CTCCTATC-TCC
3411979 CTCCTATCT--
1 CTCCTATCTCC
*
3411988 CTACTATCT--
1 CTCCTATCTCC
*
3411997 CTCCTGTCTCTC
1 CTCCTATCTC-C
3412009 CTCCTATCATCC
1 CTCCTATC-TCC
3412021 CTCCT
1 CTCCT
3412026 CTCCCTTCTT
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
9 15 0.31
11 1 0.02
12 29 0.59
13 4 0.08
ACGTcount: A:0.10, C:0.48, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Done.