Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold113
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3764034
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Warning! 4009 characters in sequence are not A, C, G, or T
File 23 of 23
Found at i:3719353 original size:13 final size:13
Alignment explanation
Indices: 3719335--3719360 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3719325 ACAAAGATCC
3719335 ATGTATCGATACA
1 ATGTATCGATACA
3719348 ATGTATCGATACA
1 ATGTATCGATACA
3719361 CGGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3719424 original size:19 final size:18
Alignment explanation
Indices: 3719400--3719467 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
3719390 CAGTAGCTAA
3719400 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
3719419 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
3719434 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
3719451 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
3719468 TCGTTGCATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:3719440 original size:13 final size:13
Alignment explanation
Indices: 3719422--3719446 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3719412 ACAATACTTA
3719422 TGTATCGATACAT
1 TGTATCGATACAT
3719435 TGTATCGATACA
1 TGTATCGATACA
3719447 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3719444 original size:32 final size:32
Alignment explanation
Indices: 3719403--3719465 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
3719393 TAGCTAATTA
*
3719403 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
3719435 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
3719466 AATCGTTGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:3719547 original size:21 final size:21
Alignment explanation
Indices: 3719523--3719579 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
3719513 CATTTGTAGG
3719523 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
3719544 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
3719565 ATGTATCGATACATT
1 ATGTATCGATACATT
3719580 TGGATAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:3722348 original size:21 final size:20
Alignment explanation
Indices: 3722302--3722350 Score: 80
Period size: 20 Copynumber: 2.4 Consensus size: 20
3722292 AGAGAATAGA
3722302 TGTATGTGCAAATAAATTTT
1 TGTATGTGCAAATAAATTTT
*
3722322 TGTATGTGCGAATAAATTTT
1 TGTATGTGCAAATAAATTTT
3722342 TGATATGTG
1 TG-TATGTG
3722351 TGTAAATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.45
Consensus pattern (20 bp):
TGTATGTGCAAATAAATTTT
Found at i:3723129 original size:32 final size:33
Alignment explanation
Indices: 3723083--3723146 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
3723073 TAGCCAAACT
**
3723083 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
*
3723115 TGTATCGATTCACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
3723147 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:3724145 original size:123 final size:123
Alignment explanation
Indices: 3723895--3724150 Score: 363
Period size: 123 Copynumber: 2.1 Consensus size: 123
3723885 TTTCAACGCA
** * **
3723895 TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTTGTCCTCAAGGAGCAGGATGCCTTTT
1 TTTTCCTTTTAAAGCCCACACAAACTGGTGGCACCTTCTTGTCCTCAAAGAGCAGGACACCTTTT
* * *
3723960 ATTTTCAAAGCTCACACAAGTTGGTGGCACCTCTTAGTCCTCAAAGAGTAGGATGCCT
66 ATTTTCAAAGCCCACACAAGTGGGTGGCACCTCTTAGTCCTCAAAGAGCAGGATGCCT
*
3724018 TTTTCTTTTTAAAGCCCACACAAACTGGTGGCACCTT-TTAGTCCTCAAAGAGCAGGACACCTTT
1 TTTTCCTTTTAAAGCCCACACAAACTGGTGGCACCTTCTT-GTCCTCAAAGAGCAGGACACC-TT
* * * *
3724082 TTTTTTTCAAAGCCCACACGAGTGGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGCC-
64 TTATTTTCAAAGCCCACACAAGTGGGTGGCACCTCTTAGTCCTCAAAGAGCAGGATGCCT
3724141 TTTTCCTTTT
1 TTTTCCTTTT
3724151 CTCTTTTGCC
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
122 2 0.02
123 61 0.52
124 54 0.46
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (123 bp):
TTTTCCTTTTAAAGCCCACACAAACTGGTGGCACCTTCTTGTCCTCAAAGAGCAGGACACCTTTT
ATTTTCAAAGCCCACACAAGTGGGTGGCACCTCTTAGTCCTCAAAGAGCAGGATGCCT
Found at i:3724151 original size:62 final size:62
Alignment explanation
Indices: 3723895--3724151 Score: 331
Period size: 62 Copynumber: 4.2 Consensus size: 62
3723885 TTTCAACGCA
*
3723895 TTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTCTT-GTCCTCAAGGAGCAGGATGCC
1 TTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACC-TCTTAGTCCTCAAAGAGCAGGATGCC
* * *
3723956 TTTT-ATTTTCAAAGCTCACACAAGTTGGTGGCACCTCTTAGTCCTCAAAGAGTAGGATGCC
1 TTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTCTTAGTCCTCAAAGAGCAGGATGCC
* * ** * **
3724017 TTTTTCTTTTTAAAGCCCACACAAACTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACC
1 TTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTCTTAGTCCTCAAAGAGCAGGATGCC
** * * * *
3724079 TTTTTTTTTTCAAAGCCCACACGAGTGGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGCC
1 TTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTCTTAGTCCTCAAAGAGCAGGATGCC
3724141 TTTTCCTTTTC
1 TTTTCCTTTTC
3724152 TCTTTTGCCC
Statistics
Matches: 169, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
60 8 0.05
61 51 0.30
62 110 0.65
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (62 bp):
TTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTCTTAGTCCTCAAAGAGCAGGATGCC
Found at i:3724398 original size:42 final size:42
Alignment explanation
Indices: 3724225--3724429 Score: 159
Period size: 42 Copynumber: 4.8 Consensus size: 42
3724215 TAGGGTGCCT
*
3724225 TTTTTTTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCA
1 TTTTATTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCA
* * * * *
3724267 CTTCATTTCCTTCATTTCCCTTCTAGTTCTCAAAAAGCAGGA--CA
1 TTTTATTTCCTT--TTTTCCTT-T-GTCCTCAAAGAGCAGGACGCA
* * * *
3724311 TTTTTAATTTCC-TTTTTCCTTTGTCTTCAAAGGGCAAGATGCA
1 -TTTT-ATTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCA
* * *
3724354 TTTTATTTCCTTTTTTCCTTTGTCCTCAAGGAGTAGGACCCA
1 TTTTATTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCA
* ** *
3724396 TTTCA-TT-CTCTTTTTCCTTAATCCTTAAAGAGCA
1 TTTTATTTCCT-TTTTTCCTTTGTCCTCAAAGAGCA
3724430 TGATGCCCCC
Statistics
Matches: 126, Mismatches: 27, Indels: 21
0.72 0.16 0.12
Matches are distributed among these distances:
40 2 0.02
41 39 0.31
42 42 0.33
43 9 0.07
44 9 0.07
45 4 0.03
46 21 0.17
ACGTcount: A:0.20, C:0.24, G:0.12, T:0.44
Consensus pattern (42 bp):
TTTTATTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCA
Found at i:3727596 original size:131 final size:129
Alignment explanation
Indices: 3727394--3727817 Score: 544
Period size: 131 Copynumber: 3.3 Consensus size: 129
3727384 TTTCTTTCCC
* *
3727394 AAACATCAATTTTTCATAATCGGGGATACTCCAATCCCCTTATTTTCGAGGGGATACTCCAACCC
1 AAACACCAATTTTTCATAATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCC
**
3727459 TAGCTTTATTTCTAAAATATTGATTTCTCACAATCGGGAATACTCCAACCCCAATTTTATTTTTA
66 CGGCTTTATTTCTAAAATATTGATTTCTCACAATCGGG-ATACTCCAACCCCAATTTTATTTTTA
* * * *
3727524 AAACACCAATCTTTTCATAATCGAGCATACTCTAATCCCGTTATTTCCGAGGGGATACTCCAACC
1 AAACACCAAT-TTTTCATAATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACC
* * * *
3727589 CCGGCTTTATTTCTAAATTTTTGATTGCTCACAATCAGGGATACTCCAACCCCTATTTTATTTTT
65 CCGGCTTTATTTCTAAAATATTGATTTCTCACAATC-GGGATACTCCAACCCCAATTTTATTTTT
3727654 A
129 A
* * * * *
3727655 AAACACTAAATTTTCACAATCGGGGATACTCCAACCCCGTT-TTTTCGCGGGGATACTCCAACCC
1 AAACACCAATTTTTCATAATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCC
* * * * * * *
3727719 CGGCCTTATTTCTAAAGTATCGATTTTTCACAATCGGGGATACTCCAACCTCGATTTTATTTTCA
66 CGGCTTTATTTCTAAAATATTGATTTCTCACAATC-GGGATACTCCAACCCCAATTTTATTTTTA
* * * *
3727784 AAACACCGATTTTCCGTAATCAAGGGATACTCCA
1 AAACACCAATTTTTCATAATC-GGGGATACTCCA
3727818 GCCCCGTTGT
Statistics
Matches: 253, Mismatches: 38, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
129 91 0.36
130 46 0.18
131 113 0.45
132 3 0.01
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (129 bp):
AAACACCAATTTTTCATAATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCC
CGGCTTTATTTCTAAAATATTGATTTCTCACAATCGGGATACTCCAACCCCAATTTTATTTTTA
Found at i:3735076 original size:20 final size:20
Alignment explanation
Indices: 3735051--3735182 Score: 74
Period size: 20 Copynumber: 6.5 Consensus size: 20
3735041 AATTGTAAGC
3735051 ATGTATCGATACATTTACTT
1 ATGTATCGATACATTTACTT
*
3735071 ATGTATCGATACATTTCCTT
1 ATGTATCGATACATTTACTT
* * * *
3735091 -GGCA--GTATGCATGGTGA-TT
1 ATGTATCG-ATACAT--TTACTT
* ***
3735110 TTGTATCGATACATTTTAGGC
1 ATGTATCGATACA-TTTACTT
* * *
3735131 ATGTATCAATAAATTCACTT
1 ATGTATCGATACATTTACTT
3735151 ATGTATCGATACATTTACTAT
1 ATGTATCGATACATTTACT-T
*
3735172 TTGTATCGATA
1 ATGTATCGATA
3735183 AAAATTGTAG
Statistics
Matches: 80, Mismatches: 23, Indels: 17
0.67 0.19 0.14
Matches are distributed among these distances:
17 1 0.01
18 5 0.06
19 4 0.05
20 43 0.54
21 25 0.31
22 2 0.03
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTACTT
Found at i:3736922 original size:4 final size:4
Alignment explanation
Indices: 3736913--3736940 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
3736903 AATCTTGCAA
3736913 AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT
3736941 CTAGGTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:3740577 original size:28 final size:28
Alignment explanation
Indices: 3740496--3740577 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
3740486 TTTTGGAGAT
*
3740496 AATAACGAGGTTGGAGTGTTCCCTCG--GA
1 AATAACGAGGTTGGAGT-AT-CCTCGATGA
* * *
3740524 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGAGGTTGGAGTATCCTCGATGA
3740552 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGAGGTTGGAGTATCCTCGAT
3740578 TGTGAAAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 4 0.09
27 1 0.02
28 40 0.89
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
AATAACGAGGTTGGAGTATCCTCGATGA
Found at i:3740721 original size:51 final size:51
Alignment explanation
Indices: 3740560--3740731 Score: 173
Period size: 53 Copynumber: 3.3 Consensus size: 51
3740550 GAAATAACGA
* * * * *
3740560 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAA-TCG-ATATTTTGAAAATAAAATCGG
** * * * * * * *
3740613 AATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATCGATATTTTGAAAATAAAATCGG
*
3740666 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAATCGG
3740717 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
3740732 TCAGAAATAA
Statistics
Matches: 95, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
51 39 0.41
53 49 0.52
54 2 0.02
55 5 0.05
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAATCGG
Found at i:3740777 original size:27 final size:28
Alignment explanation
Indices: 3740714--3740789 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
3740704 AAAATAAAGT
*
3740714 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
3740742 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
3740769 CGGGGTTGGAGTGTCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
3740790 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:3743215 original size:20 final size:20
Alignment explanation
Indices: 3743190--3743244 Score: 110
Period size: 20 Copynumber: 2.8 Consensus size: 20
3743180 AAAATGCCTG
3743190 AATGTATCGATACATTGTAA
1 AATGTATCGATACATTGTAA
3743210 AATGTATCGATACATTGTAA
1 AATGTATCGATACATTGTAA
3743230 AATGTATCGATACAT
1 AATGTATCGATACAT
3743245 CTGGGTAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTGTAA
Found at i:3743300 original size:13 final size:13
Alignment explanation
Indices: 3743282--3743307 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3743272 ACAAAGATCC
3743282 ATGTATCGATACA
1 ATGTATCGATACA
3743295 ATGTATCGATACA
1 ATGTATCGATACA
3743308 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3743303 original size:33 final size:33
Alignment explanation
Indices: 3743261--3743327 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3743251 AAAATTTCCA
***
3743261 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
3743294 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
3743327 A
1 A
3743328 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:3743371 original size:19 final size:18
Alignment explanation
Indices: 3743347--3743414 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
3743337 CAGTAGCTAA
3743347 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
3743366 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
3743381 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
3743398 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
3743415 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:3743387 original size:13 final size:13
Alignment explanation
Indices: 3743369--3743393 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3743359 ACAATACTTA
3743369 TGTATCGATACAT
1 TGTATCGATACAT
3743382 TGTATCGATACA
1 TGTATCGATACA
3743394 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3743391 original size:32 final size:32
Alignment explanation
Indices: 3743350--3743412 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
3743340 TAGCTAATTA
*
3743350 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
3743382 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
3743413 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:3743494 original size:21 final size:21
Alignment explanation
Indices: 3743470--3743526 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
3743460 CATTTGTAGG
3743470 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
3743491 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
3743512 ATGTATCGATACATT
1 ATGTATCGATACATT
3743527 TAAATTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:3744074 original size:55 final size:55
Alignment explanation
Indices: 3743990--3745001 Score: 1511
Period size: 55 Copynumber: 18.4 Consensus size: 55
3743980 ATAAATTGTA
* * * * * * *
3743990 TCCTGCTCATTGAGGAGTAAAAAGTGCCACTAACTCGTGTGGGCCTTGAA-AGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGG-CTTTAAGAGGTG
* *
3744045 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCCACTTGTGTGGGCTTTGAA-AAGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* * *
3744100 TCCTGCTCTTTGGGGAATGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
3744155 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
3744210 TCCTGTTCTTTGAGGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAA-GTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
3744265 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
3744320 TCCTGCTCGTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
3744375 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTG-GTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
3744429 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
3744484 TCCTGCTCGTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
3744539 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTG-GTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
3744593 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
3744648 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAGAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
3744703 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
3744758 TCCTGCTCTTTGAGGACTGGAATA-TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
3744813 TCCTGTTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
3744868 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
3744923 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
3744978 TCCTGCTCTTTGAGGACTAAAAAG
1 TCCTGCTCTTTGAGGACTGAAAAG
3745002 CGGAAGGAGA
Statistics
Matches: 889, Mismatches: 44, Indels: 48
0.91 0.04 0.05
Matches are distributed among these distances:
53 16 0.02
54 106 0.12
55 737 0.83
56 30 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
Found at i:3744268 original size:165 final size:165
Alignment explanation
Indices: 3743990--3744995 Score: 1695
Period size: 165 Copynumber: 6.1 Consensus size: 165
3743980 ATAAATTGTA
* * * * * * *
3743990 TCCTGCTCATTGAGGAGT-AAAAAGTGCCACTAACTCGTGTGGGCCTTGAAAGGCGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCT
* * * *
3744054 TTGAGGACTGAAAAGTGCCACCCACTTGTGTGGGCTTTGAA-AAGTGTCCTGCTCTTTGGGGAAT
65 TTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACT
3744118 GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
129 GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
3744155 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGTTCTT
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
*
3744220 TGAGGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGGGGACTG
66 TGAGGACTGAAAA-GTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTG
3744284 AAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
130 AAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
3744320 TCCTGCTCGTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
*
3744385 TGAGGACTGGAAAA-TGCCACCAACTTG-GTGGGCTTTAAGAGGTGTCCTGCTCTTTGGGGACTG
66 TGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTG
3744448 AAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
130 AAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
3744484 TCCTGCTCGTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
3744549 TGAGGACTGGAAAA-TGCCACCAACTTG-GTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTG
66 TGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTG
3744612 AAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
130 AAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
3744648 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
* *
3744713 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGG
66 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGA
**
3744778 AATATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
131 AAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
3744813 TCCTGTTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
*
3744878 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGA
66 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGA
3744943 AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
131 AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
3744978 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
3744996 AAAAAGCGGA
Statistics
Matches: 806, Mismatches: 26, Indels: 18
0.95 0.03 0.02
Matches are distributed among these distances:
163 4 0.00
164 327 0.41
165 465 0.58
166 6 0.01
167 4 0.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (165 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGA
AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
Found at i:3744319 original size:29 final size:29
Alignment explanation
Indices: 3744231--3744319 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
3744221 GAGGACTAAA
3744231 AGGTGCCACCAACTTGTGTGGGCTTTAAG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAG
** * *
3744260 AGGTGTCCTGC-TCTT-TG-GGGAC-TGAA-
1 AGGTG-CCACCAACTTGTGTGGG-CTTTAAG
3744286 AGGTGCCACCAACTTGTGTGGGCTTTAAG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAG
3744315 AGGTG
1 AGGTG
3744320 TCCTGCTCGT
Statistics
Matches: 45, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
25 3 0.07
26 8 0.18
27 9 0.20
28 9 0.20
29 13 0.29
30 3 0.07
ACGTcount: A:0.19, C:0.19, G:0.34, T:0.28
Consensus pattern (29 bp):
AGGTGCCACCAACTTGTGTGGGCTTTAAG
Found at i:3744888 original size:26 final size:26
Alignment explanation
Indices: 3744859--3744948 Score: 83
Period size: 26 Copynumber: 3.3 Consensus size: 26
3744849 GTGTGGGCTT
3744859 TGAAAGGTGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTGCTCTTTGAGGAC
** * * *
3744885 TGAAAGGTG-CCACCAACTTGTGTGGGC
1 TGAAAGGTGTCCTGC-TCTT-TGAGGAC
*
3744912 TTTAAGAGGTGTCCTGCTCTTTGAGGAC
1 -TGAA-AGGTGTCCTGCTCTTTGAGGAC
3744940 TGAAAGGTG
1 TGAAAGGTG
3744949 CCACCAACTT
Statistics
Matches: 47, Mismatches: 12, Indels: 10
0.68 0.17 0.14
Matches are distributed among these distances:
25 3 0.06
26 17 0.36
27 8 0.17
28 8 0.17
29 8 0.17
30 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGAGGAC
Found at i:3745981 original size:1 final size:1
Alignment explanation
Indices: 3745977--3746029 Score: 61
Period size: 1 Copynumber: 53.0 Consensus size: 1
3745967 CTTTTCTCTC
* * * * *
3745977 TTTTTCTTTGTTTTGTTTTTTTTGTTTTTTTTTTCTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3746030 GAGAAGGTGG
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.00, C:0.04, G:0.06, T:0.91
Consensus pattern (1 bp):
T
Found at i:3758492 original size:28 final size:28
Alignment explanation
Indices: 3758411--3758492 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
3758401 TTTTGGAGAT
*
3758411 AATAACGAGGTTGGAGTGTTCCCTCG--GA
1 AATAACGAGGTTGGAGT-AT-CCTCGATGA
* * *
3758439 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGAGGTTGGAGTATCCTCGATGA
3758467 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGAGGTTGGAGTATCCTCGAT
3758493 TGTGAAAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 4 0.09
27 1 0.02
28 40 0.89
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
AATAACGAGGTTGGAGTATCCTCGATGA
Found at i:3758636 original size:51 final size:51
Alignment explanation
Indices: 3758475--3758646 Score: 173
Period size: 53 Copynumber: 3.3 Consensus size: 51
3758465 GAAATAACGA
* * * * *
3758475 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAA-TCG-ATATTTTGAAAATAAAATCGG
** * * * * * * *
3758528 AATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATCGATATTTTGAAAATAAAATCGG
*
3758581 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAATCGG
3758632 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
3758647 TCAGAAATAA
Statistics
Matches: 95, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
51 39 0.41
53 49 0.52
54 2 0.02
55 5 0.05
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAATCGG
Found at i:3758692 original size:27 final size:28
Alignment explanation
Indices: 3758629--3758704 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
3758619 AAAATAAAGT
*
3758629 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
3758657 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
3758684 CGGGGTTGGAGTGTCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
3758705 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:3761193 original size:13 final size:13
Alignment explanation
Indices: 3761175--3761200 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3761165 ACAAAGATCC
3761175 ATGTATCGATACA
1 ATGTATCGATACA
3761188 ATGTATCGATACA
1 ATGTATCGATACA
3761201 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3761196 original size:33 final size:33
Alignment explanation
Indices: 3761154--3761220 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3761144 AAAATTTCCA
***
3761154 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
3761187 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
3761220 A
1 A
3761221 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:3761264 original size:19 final size:18
Alignment explanation
Indices: 3761240--3761307 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
3761230 CAGTAGCTAA
3761240 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
3761259 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
3761274 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
3761291 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
3761308 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:3761280 original size:13 final size:13
Alignment explanation
Indices: 3761262--3761286 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3761252 ACAATACTTA
3761262 TGTATCGATACAT
1 TGTATCGATACAT
3761275 TGTATCGATACA
1 TGTATCGATACA
3761287 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3761284 original size:32 final size:32
Alignment explanation
Indices: 3761243--3761305 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
3761233 TAGCTAATTA
*
3761243 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
3761275 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
3761306 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:3761387 original size:21 final size:21
Alignment explanation
Indices: 3761363--3761419 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
3761353 CATTTGTAGG
3761363 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
3761384 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
3761405 ATGTATCGATACATT
1 ATGTATCGATACATT
3761420 TAAATTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:3761446 original size:16 final size:16
Alignment explanation
Indices: 3761425--3761456 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
3761415 ACATTTAAAT
3761425 TTTTTTTTTTTTTTCA
1 TTTTTTTTTTTTTTCA
3761441 TTTTTTTTTTTTTTCA
1 TTTTTTTTTTTTTTCA
3761457 AACACTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.06, G:0.00, T:0.88
Consensus pattern (16 bp):
TTTTTTTTTTTTTTCA
Done.