Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1132
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 29472
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.31
Found at i:3330 original size:79 final size:79
Alignment explanation
Indices: 3179--3399 Score: 241
Period size: 79 Copynumber: 2.8 Consensus size: 79
3169 GTAGGAGTAC
* *
3179 CCCTT-AGAGATGGTGGGGTTGGAGTATCCCTAAAGATGAAAAATTCAGCATTTTAGAAGTAAAA
1 CCCTTCAGAGATGGTGGGGTTGGAGTATCCCCAGAGATG-AAAATTCAGCATTTTAGAAGTAAAA
* * *
3243 ATAGGGTTGGAATGT
65 ACAAGGTTGGAATAT
* * * * * *
3258 CCCTTCGGAGATGGTGGGATTGAAGTATCCCCAGAGATGAAAATTTAGCGTTTTAGAAGTAATAA
1 CCCTTCAGAGATGGTGGGGTTGGAGTATCCCCAGAGATGAAAATTCAGCATTTTAGAAGTAAAAA
*
3323 CAAGGTTGGAGTAT
66 CAAGGTTGGAATAT
* * * * *
3337 CCTTTCAGAGATAGTGGGGTTGGAGTATCACCGGAGATAAAAATTCA--ATGCTTTAGAAGTAAA
1 CCCTTCAGAGATGGTGGGGTTGGAGTATCCCCAGAGATGAAAATTCAGCAT--TTTAGAAGTAAA
3400 GACGGAGGTT
Statistics
Matches: 116, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
77 1 0.01
79 87 0.75
80 28 0.24
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (79 bp):
CCCTTCAGAGATGGTGGGGTTGGAGTATCCCCAGAGATGAAAATTCAGCATTTTAGAAGTAAAAA
CAAGGTTGGAATAT
Found at i:5710 original size:150 final size:150
Alignment explanation
Indices: 5507--5811 Score: 461
Period size: 150 Copynumber: 2.0 Consensus size: 150
5497 TCAGTTCAGA
5507 AGAAAACTTTATTAAGATATCTCTAAGACCTACCATCGACATAAAAGTGCTCAA-AGATCCTAGA
1 AGAAAACTTTATTAAGATATCTCTAAGACCTACCATCGACATAAAAGTGCTCAACA-ATCCTAGA
* * * * *
5571 GGA-TTTAAAAGATGAAAACAAACCTACTCCTAATTCGTACCTTTGGCGTAGAAGCAGACTCGAT
65 GAACTTAAAAAGATGAAAA-AAACCTACTCCTAATTCGTACCTTCGACGTAGAAGCAGACCCGAT
*
5635 AGTTTTATAGGACCAGATTTCG
129 AGTTTTATAAGACCAGATTTCG
* *
5657 AGAAAACTTTATTAGGATCTCTCTAAGACCTACCATCGACATAAAAGTGCTCAACAATCCTAGAG
1 AGAAAACTTTATTAAGATATCTCTAAGACCTACCATCGACATAAAAGTGCTCAACAATCCTAGAG
* *
5722 AACTTAAAAAGATGAAAAAAACCTACTCCTAATTTGTACCTTCGACGTAGAAGTAGACCCGATAG
66 AACTTAAAAAGATGAAAAAAACCTACTCCTAATTCGTACCTTCGACGTAGAAGCAGACCCGATAG
* *
5787 TTTTATAAGACTAGGTTTCG
131 TTTTATAAGACCAGATTTCG
*
5807 GGAAA
1 AGAAA
5812 TATGCAAACA
Statistics
Matches: 140, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
150 125 0.89
151 15 0.11
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.26
Consensus pattern (150 bp):
AGAAAACTTTATTAAGATATCTCTAAGACCTACCATCGACATAAAAGTGCTCAACAATCCTAGAG
AACTTAAAAAGATGAAAAAAACCTACTCCTAATTCGTACCTTCGACGTAGAAGCAGACCCGATAG
TTTTATAAGACCAGATTTCG
Found at i:6623 original size:12 final size:11
Alignment explanation
Indices: 6592--6621 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
6582 ATTAAGACAA
6592 TAATTTTTATT
1 TAATTTTTATT
6603 TAATTTTTATT
1 TAATTTTTATT
6614 TAATTTTT
1 TAATTTTT
6622 TAATTTCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TAATTTTTATT
Found at i:6791 original size:141 final size:142
Alignment explanation
Indices: 6603--6875 Score: 394
Period size: 142 Copynumber: 1.9 Consensus size: 142
6593 AATTTTTATT
6603 TAATTTTTATTTAATTTTTTAATTTCCAAAAAATTAATTTCAGACCTTAACAGAGAA-CTAAAAA
1 TAATTTTTATTTAATTTTTTAATTTCCAAAAAATTAATTTCAGACCTTAACAGAGAATC-AAAAA
*
6667 GATAC-AAAAGTTTTGAAGATTTCTATACCCCTACGGAAAACCATAGGAAT-ATTAGAAATCTCA
65 GATACGAAAAGTTTTGAAGATTTCTATACCCCTACGAAAAACCATAGGAATGA-TAGAAATCTCA
6730 AAAAATTAAGACAA
129 AAAAATTAAGACAA
* * ** *
6744 TAATTTTTATTTAA-TTTTTAATTTCCAAAAAAATTCATTT-TGTACCTTAATGGAGAATCGAAA
1 TAATTTTTATTTAATTTTTTAATTTCC-AAAAAATTAATTTCAG-ACCTTAACAGAGAATCAAAA
* * *
6807 AGATACGAAAAGTTTTGAAGATTTCTATACCCGTACGAAAAACCATAGGAATGATGGAAATCTGA
64 AGATACGAAAAGTTTTGAAGATTTCTATACCCCTACGAAAAACCATAGGAATGATAGAAATCTCA
6872 AAAA
129 AAAA
6876 GATGACTAAG
Statistics
Matches: 118, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
140 13 0.11
141 47 0.40
142 57 0.48
143 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (142 bp):
TAATTTTTATTTAATTTTTTAATTTCCAAAAAATTAATTTCAGACCTTAACAGAGAATCAAAAAG
ATACGAAAAGTTTTGAAGATTTCTATACCCCTACGAAAAACCATAGGAATGATAGAAATCTCAAA
AAATTAAGACAA
Found at i:7973 original size:18 final size:18
Alignment explanation
Indices: 7950--7994 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
7940 GCTTTGTTTT
**
7950 TTTTTCTTTTCCTTTTCA
1 TTTTTCTTCCCCTTTTCA
7968 TTTTTCTTCCCCTTTTCA
1 TTTTTCTTCCCCTTTTCA
7986 TTTTTCTTC
1 TTTTTCTTC
7995 TTTTTTATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTTCTTCCCCTTTTCA
Found at i:12065 original size:16 final size:16
Alignment explanation
Indices: 12046--12083 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
12036 TTATCTCACC
12046 TAACTCTTCTCGAATA
1 TAACTCTTCTCGAATA
12062 TAACTCTTCTCGAATA
1 TAACTCTTCTCGAATA
12078 TAACTC
1 TAACTC
12084 AAGGCTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.37
Consensus pattern (16 bp):
TAACTCTTCTCGAATA
Found at i:13390 original size:16 final size:16
Alignment explanation
Indices: 13369--13448 Score: 65
Period size: 16 Copynumber: 4.9 Consensus size: 16
13359 TCTTTTTTAT
*
13369 ATAAAATTAAAAAATA
1 ATAAAATAAAAAAATA
*
13385 ATAAAACAAAAAAATA
1 ATAAAATAAAAAAATA
*
13401 ATAATCAAATAAAAAAATC
1 AT-A--AAATAAAAAAATA
*
13420 A-AAAATCAAAAAATCA
1 ATAAAATAAAAAAAT-A
*
13436 A-AAATTAAAAAAA
1 ATAAAATAAAAAAA
13449 AAAAGAAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
15 11 0.21
16 27 0.52
17 2 0.04
19 12 0.23
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.17
Consensus pattern (16 bp):
ATAAAATAAAAAAATA
Found at i:13395 original size:13 final size:14
Alignment explanation
Indices: 13379--13438 Score: 54
Period size: 13 Copynumber: 4.3 Consensus size: 14
13369 ATAAAATTAA
13379 AAAATAATAAAA-C
1 AAAATAATAAAATC
*
13392 AAAAAAATAATAATC
1 AAAATAATAA-AATC
*
13407 -AAATAAAAAAATC
1 AAAATAATAAAATC
13420 AAAAATCAA-AAAATC
1 -AAAAT-AATAAAATC
13435 AAAA
1 AAAA
13439 ATTAAAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
13 13 0.33
14 13 0.33
15 11 0.28
16 2 0.05
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (14 bp):
AAAATAATAAAATC
Found at i:13405 original size:19 final size:19
Alignment explanation
Indices: 13377--13418 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
13367 ATATAAAATT
13377 AAAA-AATAATAAAACAAA
1 AAAATAATAATAAAACAAA
* *
13395 AAAATAATAATCAAATAAA
1 AAAATAATAATAAAACAAA
13414 AAAAT
1 AAAAT
13419 CAAAAATCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.17
Consensus pattern (19 bp):
AAAATAATAATAAAACAAA
Found at i:13425 original size:15 final size:15
Alignment explanation
Indices: 13378--13448 Score: 69
Period size: 15 Copynumber: 4.9 Consensus size: 15
13368 TATAAAATTA
*
13378 AAAAATAATAAAA-C
1 AAAAATAAAAAAATC
*
13392 AAAAA-AATAATAATC
1 AAAAATAA-AAAAATC
13407 --AAATAAAAAAATC
1 AAAAATAAAAAAATC
*
13420 AAAAATCAAAAAATC
1 AAAAATAAAAAAATC
13435 AAAAATTAAAAAAA
1 AAAAA-TAAAAAAA
13449 AAAAGAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
13 11 0.24
14 10 0.22
15 18 0.39
16 7 0.15
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.15
Consensus pattern (15 bp):
AAAAATAAAAAAATC
Found at i:13426 original size:20 final size:19
Alignment explanation
Indices: 13392--13429 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
13382 ATAATAAAAC
*
13392 AAAAAAATAATAATCAAAT
1 AAAAAAATAAAAATCAAAT
13411 AAAAAAATCAAAAATCAAA
1 AAAAAAAT-AAAAATCAAA
13430 AAATCAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (19 bp):
AAAAAAATAAAAATCAAAT
Found at i:13430 original size:6 final size:7
Alignment explanation
Indices: 13413--13446 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
13403 AATCAAATAA
13413 AAAAATC
1 AAAAATC
13420 AAAAATC
1 AAAAATC
13427 AAAAAATC
1 -AAAAATC
*
13435 AAAAATT
1 AAAAATC
13442 AAAAA
1 AAAAA
13447 AAAAAAGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAAATC
Found at i:15103 original size:13 final size:13
Alignment explanation
Indices: 15085--15125 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
15075 AAGCAATACG
*
15085 AGCAAAGGAGAGT
1 AGCAAAGGAGAGC
15098 AGCAAAGGAGAGC
1 AGCAAAGGAGAGC
15111 AGCAAAGGATGAGC
1 AGCAAAGGA-GAGC
15125 A
1 A
15126 AAAGGGAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
13 21 0.81
14 5 0.19
ACGTcount: A:0.46, C:0.12, G:0.37, T:0.05
Consensus pattern (13 bp):
AGCAAAGGAGAGC
Found at i:27484 original size:10 final size:11
Alignment explanation
Indices: 27459--27488 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
27449 TATTATGCTT
*
27459 AAAAAAGAAGG
1 AAAAAAAAAGG
27470 AAAAAAAAAGG
1 AAAAAAAAAGG
27481 AAAAAAAA
1 AAAAAAAA
27489 TTAGTTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGG
Found at i:28630 original size:44 final size:43
Alignment explanation
Indices: 28522--29467 Score: 831
Period size: 44 Copynumber: 21.8 Consensus size: 43
28512 TTGACCTTAA
** * *
28522 AGACTT-CTTTTTTTTAAGTCTGCCTGTTGGCTTT-ATCCCTAG
1 AGACTTCCTTTTCCTTAAGTCTGCCTGTCGGCTTTGA-CCCTGG
* * *
28564 AGACTT-CTTTACCCTTAAGTCTGCTTGTCGGCTCTGACCCTGG
1 AGACTTCCTTT-TCCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* *
28607 AGACTTCCTTTATCCTTAAGTCTGTCTGTCGGCTTTGACCTTGG
1 AGACTTCCTTT-TCCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * *
28651 AGACTTCC-TTTCCTTAAGTCTGTCTGTCGACTTTGACCTTGG
1 AGACTTCCTTTTCCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * * *
28693 AGACTT-CTTTTCCTTAAGTCTGCCTATCAGCTTTGTCCTTGG
1 AGACTTCCTTTTCCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * ** *
28735 AGACTTCCTTTTCCCTCAAGTCTACCTGTTAGCTTTGACCCTAG
1 AGACTTCCTTTT-CCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * * *
28779 AGACTTCCTTTATCTTTAAGTTTGCTTGTCGACTTTGACCCTGG
1 AGACTTCCTTT-TCCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* *
28823 AGACTTCC-TTTCCTTAAGTCTGCCTGTCGG-TTTTATCCCTAG
1 AGACTTCCTTTTCCTTAAGTCTGCCTGTCGGCTTTGA-CCCTGG
* * * ** *
28865 AGACTTCCTTTTCCCTCAAGTCTACCTATCAACTTTGTCCCTGG
1 AGACTTCCTTTT-CCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * * * **
28909 AGACTT-TTTTATCCTCAAGTCTGCTTGTCGGCTTTAACTTTGG
1 AGACTTCCTTT-TCCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
*
28952 AGACTTCC-TTTCCTTAAGTCTGCCTGTCGGCTTTGTCCCTGG
1 AGACTTCCTTTTCCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * * *
28994 AGACTT-CTTTTACCCTTAAGTCTACCTGTCGACTTTGTCCCTTG
1 AGACTTCCTTTT--CCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * * *
29038 AGACTTCCTTTTCCCTCAAGTCTGCCTATCGACTTTGACCTTGG
1 AGACTTCCTTTT-CCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * * *
29082 AGACTTTC-TTTCCTTAAGTCTGCCTGTTGGCTTTGTCCTTGG
1 AGACTTCCTTTTCCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * * *
29124 AGACTT-CTTTTACCCTCAAGTCTACCTGTCGGCTTTGTCCCTAG
1 AGACTTCCTTTT--CCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * * *
29168 AGACTTCTTTTTCCCTCAAGTCTGCCTGTCAGCTTTGTCCCTGG
1 AGACTTCCTTTT-CCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * * * *
29212 AGACTTCCTTTACCCTCAAGTCTTCTTGTCAGCTTTGACCCTGG
1 AGACTTCCTTT-TCCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * * * *
29256 AGACTTCTTTTTCCCTCAAGTCTACCTGTCGGCTTTGTCCTTGG
1 AGACTTCCTTTT-CCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * * * * * *
29300 AGACTT-CTTTTACCCTCAAGTATGCTTGTCGGTTTTGTCCTTGA
1 AGACTTCCTTTT--CCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * * *
29344 AGACTT-CTTTTGCCCTCAAGTCTGCCTGTCAGCTTTGTCCCTAG
1 AGACTTCCTTTT--CCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* * *
29388 AGACTTCCTTTACCCTTAAGTTTTCCTGTCGGCTTTGACCCTGG
1 AGACTTCCTTT-TCCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
* *
29432 AGACTTTCTTTTCCTTAAGTCTGTCTGTCGGCTTTG
1 AGACTTCCTTTTCCTTAAGTCTGCCTGTCGGCTTTG
29468 TCTGT
Statistics
Matches: 751, Mismatches: 127, Indels: 51
0.81 0.14 0.05
Matches are distributed among these distances:
41 7 0.01
42 181 0.24
43 102 0.14
44 444 0.59
45 17 0.02
ACGTcount: A:0.14, C:0.28, G:0.18, T:0.40
Consensus pattern (43 bp):
AGACTTCCTTTTCCTTAAGTCTGCCTGTCGGCTTTGACCCTGG
Found at i:28843 original size:130 final size:129
Alignment explanation
Indices: 28563--29467 Score: 957
Period size: 130 Copynumber: 7.0 Consensus size: 129
28553 TTTATCCCTA
* * * *
28563 GAGACTT-CTTTACCCTTAAGTCTGCTTGTCGGCTCTGACCCTGGAGACTTCCTTTAT-CCTTAA
1 GAGACTTCCTTT--CCTTAAGTCTGCCTGTCGGCTTTGTCCCTGGAGACTTCCTTT-TCCCTCAA
** * *
28626 GTCTGTCTGTCGGCTTTGACCTTGGAGACTTCC-TTTCCTTAAGTCTG-TCTGTCGACTTTGACC
63 GTCTACCTGTCGGCTTTGACCCTGGAGACTTCCTTTTCCTCAAGTCTGCT-TGTCGACTTTGACC
28689 TTG
127 TTG
* * * *
28692 GAGACTTCTTTTCCTTAAGTCTGCCTATCAGCTTTGTCCTTGGAGACTTCCTTTTCCCTCAAGTC
1 GAGACTTCCTTTCCTTAAGTCTGCCTGTCGGCTTTGTCCCTGGAGACTTCCTTTTCCCTCAAGTC
** * * * * *
28757 TACCTGTTAGCTTTGACCCTAGAGACTTCCTTTATCTTTAAGTTTGCTTGTCGACTTTGACCCTG
66 TACCTGTCGGCTTTGACCCTGGAGACTTCCTTT-TCCTCAAGTCTGCTTGTCGACTTTGACCTTG
* * *
28822 GAGACTTCCTTTCCTTAAGTCTGCCTGTCGGTTTTATCCCTAGAGACTTCCTTTTCCCTCAAGTC
1 GAGACTTCCTTTCCTTAAGTCTGCCTGTCGGCTTTGTCCCTGGAGACTTCCTTTTCCCTCAAGTC
* ** * * * * *
28887 TACCTATCAACTTTGTCCCTGGAGACTT-TTTTATCCTCAAGTCTGCTTGTCGGCTTTAACTTTG
66 TACCTGTCGGCTTTGACCCTGGAGACTTCCTTT-TCCTCAAGTCTGCTTGTCGACTTTGACCTTG
*
28951 GAGACTTCCTTTCCTTAAGTCTGCCTGTCGGCTTTGTCCCTGGAGACTT-CTTTTACCCTTAAGT
1 GAGACTTCCTTTCCTTAAGTCTGCCTGTCGGCTTTGTCCCTGGAGACTTCCTTTT-CCCTCAAGT
* * * * *
29015 CTACCTGTCGACTTTGTCCCTTGAGACTTCCTTTTCCCTCAAGTCTGCCTATCGACTTTGACCTT
65 CTACCTGTCGGCTTTGACCCTGGAGACTTCCTTTT-CCTCAAGTCTGCTTGTCGACTTTGACCTT
29080 G
129 G
* * *
29081 GAGACTTTCTTTCCTTAAGTCTGCCTGTTGGCTTTGTCCTTGGAGACTT-CTTTTACCCTCAAGT
1 GAGACTTCCTTTCCTTAAGTCTGCCTGTCGGCTTTGTCCCTGGAGACTTCCTTTT-CCCTCAAGT
* * * * * *
29145 CTACCTGTCGGCTTTGTCCCTAGAGACTTCTTTTTCCCTCAAGTCTGCCTGTC-AGCTTTGTCCC
65 CTACCTGTCGGCTTTGACCCTGGAGACTTCCTTTT-CCTCAAGTCTGCTTGTCGA-CTTTGACCT
29209 TG
128 TG
* * * * * *
29211 GAGACTTCCTTTACCCTCAAGTCTTCTTGTCAGCTTTGACCCTGGAGACTTCTTTTTCCCTCAAG
1 GAGACTTCCTTT--CCTTAAGTCTGCCTGTCGGCTTTGTCCCTGGAGACTTCCTTTTCCCTCAAG
* * * ** *
29276 TCTACCTGTCGGCTTTGTCCTTGGAGACTT-CTTTTACCCTCAAGTATGCTTGTCGGTTTTGTCC
64 TCTACCTGTCGGCTTTGACCCTGGAGACTTCCTTTT--CCTCAAGTCTGCTTGTCGACTTTGACC
29340 TTG
127 TTG
* * * * * * *
29343 AAGACTTCTTTTGCCCTCAAGTCTGCCTGTCAGCTTTGTCCCTAGAGACTTCCTTTACCCTTAAG
1 GAGACTTCCTTT--CCTTAAGTCTGCCTGTCGGCTTTGTCCCTGGAGACTTCCTTTTCCCTCAAG
* * * * *
29408 TTTTCCTGTCGGCTTTGACCCTGGAGACTTTCTTTTCCTTAAGTCTG-TCTGTCGGCTTTG
64 TCTACCTGTCGGCTTTGACCCTGGAGACTTCCTTTTCCTCAAGTCTGCT-TGTCGACTTTG
29468 TCTGT
Statistics
Matches: 666, Mismatches: 94, Indels: 30
0.84 0.12 0.04
Matches are distributed among these distances:
127 1 0.00
128 73 0.11
129 119 0.18
130 268 0.40
131 24 0.04
132 172 0.26
133 9 0.01
ACGTcount: A:0.14, C:0.28, G:0.18, T:0.40
Consensus pattern (129 bp):
GAGACTTCCTTTCCTTAAGTCTGCCTGTCGGCTTTGTCCCTGGAGACTTCCTTTTCCCTCAAGTC
TACCTGTCGGCTTTGACCCTGGAGACTTCCTTTTCCTCAAGTCTGCTTGTCGACTTTGACCTTG
Done.