genome.fa.s1133.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1133
Parameters: 2 7 7 80 10 50 1000
Length:  89227

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5945--5988	20	2.2	20	88	8	63	27	15	13	43	1.85
5986--6231	120	2.1	120	97	0	467	30	14	21	33	1.93
6154--6218	32	2.0	32	84	3	85	41	13	16	27	1.87
10060--10181	37	3.3	37	94	0	208	52	22	3	22	1.61
10848--10887	20	2.0	20	85	9	55	42	7	15	35	1.75
13323--13380	13	4.0	13	74	23	53	34	15	17	32	1.91
13398--13463	33	2.0	33	90	0	105	31	16	12	39	1.85
18117--18142	13	2.0	13	100	0	52	30	15	15	38	1.88
18098--18161	32	2.0	32	100	0	128	28	15	18	37	1.92
18097--18161	19	3.7	19	76	23	88	27	15	20	36	1.92
22778--22815	15	2.5	15	91	0	58	13	21	15	50	1.78
25254--25287	12	2.8	12	90	0	50	23	35	0	41	1.55
26882--26939	13	4.0	13	76	23	62	29	15	17	37	1.90
26881--26958	32	2.4	32	100	0	156	28	15	19	37	1.92
26895--26958	19	3.7	19	76	23	86	28	15	18	37	1.92
31055--31177	58	2.1	57	85	4	158	50	13	7	29	1.68
31078--31199	57	2.1	57	79	7	131	49	13	9	27	1.74
31162--31293	57	2.3	57	85	6	169	53	9	11	25	1.66
38153--38320	64	2.6	63	77	7	158	24	13	17	44	1.84
39487--39557	20	3.5	20	74	0	79	33	9	12	43	1.76
54831--56043	28	42.6	29	82	7	1250	28	30	17	23	1.97
56675--56752	40	2.0	39	87	2	111	33	11	12	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56675--56741	20	3.4	19	73	8	62	31	11	13	43	1.80
62713--62738	9	2.9	9	100	0	52	46	0	0	53	1.00
64079--64117	3	13.3	3	94	5	71	64	0	0	35	0.94
64185--64236	19	2.7	19	80	14	61	67	0	0	32	0.91
68119--68144	13	2.0	13	100	0	52	46	0	0	53	1.00
72223--72314	14	6.9	13	72	20	66	44	4	2	48	1.34
72223--72263	6	6.3	6	89	10	55	43	0	2	53	1.13
72285--72318	7	4.9	7	92	0	50	50	0	0	50	1.00
74387--74429	21	2.0	21	86	8	61	39	11	9	39	1.74
74467--74537	20	3.6	19	77	7	70	40	16	12	29	1.86
74507--74643	53	2.6	53	94	1	238	37	18	17	26	1.93
74667--74697	10	3.1	10	90	0	53	22	29	6	41	1.78
74676--74755	23	3.5	24	79	19	107	27	26	7	38	1.83
74808--74833	13	2.0	13	100	0	52	30	15	23	30	1.95
76207--76256	17	2.8	17	85	8	64	46	8	2	44	1.44
78630--78660	13	2.4	13	94	0	53	35	16	12	35	1.87
78614--78680	33	2.0	32	86	11	91	35	14	16	32	1.90
79801--79841	20	2.0	21	85	9	57	43	26	12	17	1.84
79904--79956	20	2.6	20	81	3	61	37	13	15	33	1.86
85395--85450	19	2.9	19	86	2	76	32	17	12	37	1.88
85518--85564	20	2.3	20	96	0	85	42	10	17	29	1.82

Tables:   1

The End!