genome.fa.s1134.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1134
Parameters: 2 7 7 80 10 50 1000
Length:  86990

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1750--1775	12	2.2	12	100	0	52	0	34	0	65	0.93
1235--9448	944	8.7	942	80	7	7866	30	19	14	35	1.91
12518--12542	13	1.9	13	100	0	50	36	16	16	32	1.90
12587--12638	13	3.5	13	73	26	50	36	17	13	32	1.89
12595--12659	19	3.8	19	73	24	72	40	15	12	32	1.84
12587--12655	32	2.2	32	97	0	129	36	17	13	33	1.88
13710--20473	475	14.2	473	82	4	7229	31	19	14	34	1.92
13710--20473	476	14.2	474	82	4	7230	31	19	14	34	1.92
20097--20780	318	2.2	318	86	3	966	32	20	12	34	1.91
19637--21250	794	2.0	790	85	2	2186	31	20	14	34	1.92
20459--34120	955	14.3	953	88	2	17267	30	18	14	35	1.91
20459--34120	477	28.6	478	85	2	17374	30	18	14	35	1.91
33792--34486	366	1.9	364	90	1	1106	30	18	13	37	1.90
34119--53191	479	39.9	478	87	2	26749	30	18	14	36	1.91
34119--53180	956	19.9	956	93	1	29888	30	18	14	36	1.91
58463--58581	42	2.8	42	92	0	193	8	46	2	42	1.47
58496--58571	12	6.9	11	75	15	52	9	48	2	39	1.49
58487--58572	24	3.8	24	72	17	85	10	45	2	41	1.51
58478--58548	18	3.6	18	69	20	52	9	43	2	43	1.52
62708--66189	477	7.4	474	76	8	2831	31	19	14	35	1.92
67781--67819	13	3.0	13	88	0	60	38	17	12	30	1.88
67829--67915	25	3.5	25	100	0	174	40	11	13	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68425--68463	16	2.4	16	91	4	60	35	25	7	30	1.84
67961--70762	476	5.9	478	82	4	3144	31	19	13	35	1.90
71895--72471	317	1.8	318	86	2	847	31	19	12	35	1.90
72213--74622	475	5.0	474	84	2	2983	30	19	13	36	1.91
74934--74958	13	1.9	13	100	0	50	32	16	16	36	1.90
74946--74998	20	2.6	21	90	3	81	41	15	16	26	1.88
75030--75056	13	2.1	13	100	0	54	29	14	14	40	1.86
77176--77201	13	2.0	13	100	0	52	30	15	15	38	1.88
79729--79805	20	3.6	20	77	16	73	42	15	15	25	1.86
81825--81855	15	2.1	15	93	0	53	12	22	16	48	1.80
83659--83703	21	2.1	21	84	8	56	22	20	4	53	1.63

Tables:   1

The End!