genome.fa.s1135.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1135
Parameters: 2 7 7 80 10 50 1000
Length:  107926

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1391--1436	21	2.2	20	82	14	58	21	17	19	41	1.90
6775--6853	16	4.9	16	78	6	79	39	31	16	12	1.86
7892--7950	16	3.7	16	79	0	64	37	32	16	13	1.88
9988--10017	7	4.4	7	91	8	53	73	0	26	0	0.84
13552--13580	14	2.1	14	100	0	58	79	0	13	6	0.93
13907--13962	21	2.8	19	81	10	60	73	3	1	21	1.08
13907--13968	18	3.3	17	75	18	52	74	3	1	20	1.05
23574--23649	32	2.4	32	95	0	134	28	19	17	34	1.94
23730--23797	32	2.1	32	94	0	118	41	17	7	33	1.77
24447--25357	49	18.2	52	73	15	370	34	16	24	25	1.95
24557--24683	67	1.9	68	86	1	184	37	12	25	23	1.90
24355--24845	228	2.1	228	86	5	679	36	14	24	24	1.92
24633--24894	107	2.4	108	85	2	366	37	14	23	24	1.93
24848--25354	43	11.1	43	79	12	555	31	18	24	25	1.97
24687--25385	49	14.6	48	78	12	712	32	17	24	25	1.97
24795--25354	92	6.0	91	85	8	672	31	17	24	25	1.97
24804--25385	141	4.1	141	84	9	741	31	18	24	25	1.97
25427--25734	34	9.5	34	72	17	208	34	12	32	20	1.90
25456--25507	27	1.9	27	92	0	86	26	15	32	25	1.95
25427--25542	61	1.9	62	90	1	189	33	12	33	20	1.90
25483--25735	35	7.6	35	75	15	207	34	13	32	20	1.91
25445--25735	97	3.0	98	82	8	344	34	12	32	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25606--25737	65	2.0	65	86	2	185	34	13	31	19	1.91
25715--25758	23	1.9	23	95	0	79	15	22	31	29	1.95
25736--25834	30	3.3	29	81	5	117	30	19	26	24	1.98
25681--25789	53	2.0	55	83	7	141	26	19	30	23	1.98
26775--26818	1	44.0	1	81	0	52	0	2	6	90	0.51
26775--26820	10	4.8	10	86	10	69	0	2	8	89	0.57
26774--26820	18	2.7	18	93	3	78	0	2	10	87	0.63
27077--27116	9	4.6	9	84	6	55	0	2	10	87	0.63
27078--27109	8	3.9	8	92	8	55	0	0	12	87	0.54
27077--27109	17	1.9	17	93	0	57	0	0	12	87	0.53
27073--27148	25	3.0	26	83	9	79	3	5	14	76	1.11
27094--27148	26	2.2	26	86	3	76	5	7	14	72	1.24
30236--30260	13	1.9	13	100	0	50	36	16	16	32	1.90
30216--30292	32	2.4	33	91	2	120	35	14	15	35	1.88
37730--37877	52	2.8	52	91	1	242	30	16	17	35	1.93
37911--38007	19	5.8	18	72	27	97	37	17	12	32	1.87
37930--37986	13	3.9	13	76	24	60	33	17	14	35	1.90
37909--38005	32	3.0	32	98	0	185	36	17	12	34	1.87
45454--45503	22	2.2	23	86	10	68	60	22	0	18	1.37
46700--46738	14	2.9	14	82	17	55	66	0	2	30	1.05
52551--52612	31	2.0	31	87	0	88	35	0	1	62	1.05
52551--52610	16	3.9	15	82	12	68	35	0	1	63	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53097--53130	14	2.4	14	90	5	50	41	0	0	58	0.98
53555--53616	32	1.9	32	83	0	79	30	0	8	61	1.25
53567--53616	16	3.1	16	82	0	64	30	0	8	62	1.24
53653--53688	16	2.2	16	90	0	54	33	2	2	61	1.25
54556--54620	16	4.1	15	72	16	51	32	3	4	60	1.33
54574--54621	16	2.9	17	87	6	64	31	0	4	64	1.12
54593--54628	17	2.2	17	95	5	65	33	0	0	66	0.92
55143--55180	15	2.5	16	83	12	53	57	0	0	42	0.98
55145--55192	20	2.5	19	86	3	60	56	2	2	39	1.23
55676--55825	34	4.4	34	81	9	171	39	24	8	28	1.84
55676--55825	68	2.2	68	85	2	203	39	24	8	28	1.84
60231--60381	34	4.4	34	81	9	164	39	23	8	27	1.84
61502--61543	18	2.3	18	91	0	66	50	2	4	42	1.36
63973--64023	2	26.0	2	88	4	77	50	0	1	47	1.12
65608--65638	2	15.5	2	100	0	62	51	0	0	48	1.00
66724--66768	2	22.5	2	100	0	90	51	0	0	48	1.00
67438--67468	8	3.9	8	95	0	53	12	0	0	87	0.55
70474--70500	13	2.1	13	100	0	54	29	14	14	40	1.86
70553--70623	20	3.5	20	90	0	97	33	15	15	35	1.89
72536--72600	31	2.1	31	100	0	130	44	12	6	36	1.67
77435--77459	13	1.9	13	100	0	50	36	16	16	32	1.90
77418--77480	33	1.9	32	87	3	90	30	15	20	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78899--78932	18	1.9	17	88	5	50	26	11	29	32	1.92
80117--80153	8	4.5	8	96	3	65	62	27	0	10	1.28
86078--86131	21	2.7	20	83	13	67	29	14	18	37	1.91
86737--86763	13	2.1	13	100	0	54	29	14	14	40	1.86
89199--89271	20	3.7	19	87	7	85	28	16	16	38	1.90
95604--95679	38	2.0	38	94	0	134	38	3	9	48	1.54
96767--96797	15	2.0	16	93	6	55	61	0	32	6	1.21
98952--98979	5	5.6	5	100	0	56	0	17	0	82	0.68
105855--106003	75	2.0	75	100	0	298	45	12	18	23	1.83

Tables:   1

The End!