genome.fa.s1138.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1138
Parameters: 2 7 7 80 10 50 1000
Length:  87355

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2733--2766	17	2.0	17	88	0	50	0	2	14	82	0.79
3300--3325	13	2.0	13	100	0	52	38	15	15	30	1.88
3279--3345	33	2.0	33	88	0	98	43	16	14	25	1.86
9573--9772	99	2.0	98	94	2	348	50	17	7	25	1.71
10360--10399	20	2.0	21	85	5	55	15	5	5	75	1.15
11081--11135	20	2.7	21	80	5	67	38	10	12	38	1.79
19188--19232	22	2.0	23	82	4	56	44	2	20	33	1.63
24238--24266	5	5.8	5	100	0	58	17	0	0	82	0.66
24609--24664	22	2.5	22	85	0	76	14	14	46	25	1.82
24631--24784	85	1.9	82	84	8	206	16	15	39	27	1.89
24746--24814	30	2.3	31	82	2	86	15	13	44	26	1.83
25202--25235	10	3.4	10	84	15	52	26	0	0	73	0.83
25202--25240	20	1.9	21	94	5	71	25	0	0	74	0.82
25495--25576	43	2.0	41	85	4	110	30	21	21	25	1.99
26052--26106	22	2.5	22	96	0	101	20	12	10	56	1.66
26266--26500	131	1.8	130	89	4	375	31	28	7	31	1.85
26355--26746	79	4.9	79	72	12	250	31	28	9	30	1.88
26357--26976	158	3.9	159	73	11	447	31	27	9	32	1.88
26700--26917	80	2.8	80	79	6	196	33	27	10	29	1.89
26348--26895	237	2.3	236	82	5	676	31	28	9	31	1.88
26927--27027	51	1.9	51	86	4	139	25	22	8	42	1.83
28115--28140	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28097--28160	32	2.0	33	87	3	94	40	17	14	28	1.88
30356--30400	21	2.1	21	84	8	56	53	4	20	22	1.63
32204--32234	15	2.1	15	93	0	53	48	16	22	12	1.80
34313--34338	13	2.0	13	100	0	52	30	15	15	38	1.88
34459--34504	21	2.2	20	81	11	58	32	19	4	43	1.71
36892--36917	13	2.0	13	100	0	52	38	15	15	30	1.88
36874--36937	32	2.0	33	87	3	94	40	17	14	28	1.88
44263--44317	20	2.7	21	75	8	60	34	14	10	40	1.81
46679--46734	27	2.1	27	90	6	87	28	30	12	28	1.93
57563--57624	19	3.2	19	71	13	54	43	14	14	27	1.84
57612--57636	13	1.9	13	100	0	50	36	16	16	32	1.90
57591--57663	32	2.3	32	92	0	119	32	10	17	38	1.85
57680--57721	21	2.0	21	95	0	75	45	9	16	28	1.79
57708--57733	13	2.0	13	100	0	52	30	15	15	38	1.88
60092--60227	52	2.6	52	85	0	191	30	27	11	30	1.92
60208--60281	27	2.7	28	87	2	105	29	33	13	22	1.93
60235--60488	79	3.2	76	83	6	296	26	26	14	31	1.95
60424--60590	51	3.3	50	82	5	183	28	25	12	32	1.92
60643--60724	27	3.0	28	78	8	89	26	30	15	26	1.96
60681--61039	79	4.5	79	89	1	452	26	27	15	31	1.96
73392--73468	15	5.4	14	76	20	70	84	6	6	2	0.86
73390--73468	8	9.6	8	75	14	54	84	6	6	2	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73390--73455	1	66.0	1	73	0	51	86	7	3	3	0.77
74521--74767	55	4.4	55	80	12	223	27	27	21	22	1.99
74596--74777	55	3.1	59	84	11	241	24	29	19	26	1.99
74548--74777	116	2.0	115	88	4	338	26	28	20	25	1.99
74691--74861	94	1.8	94	89	2	272	25	30	22	22	1.99
74628--74968	156	2.2	150	83	9	409	23	28	20	27	1.99
74904--75070	43	3.8	43	80	10	164	19	26	13	40	1.89
75796--75857	19	3.2	19	73	13	63	41	14	16	27	1.87
75845--75901	13	3.9	13	76	24	60	35	14	17	33	1.90
75824--75928	32	3.3	32	98	0	201	34	12	18	35	1.88
75826--75920	19	5.7	18	72	27	93	33	12	17	35	1.88
75945--75986	21	2.0	21	90	0	66	42	11	16	28	1.84
75973--75998	13	2.0	13	100	0	52	30	15	15	38	1.88
78355--78491	52	2.6	52	83	3	177	32	26	11	29	1.92
78476--78541	27	2.4	27	87	7	89	28	28	15	27	1.96
78501--78751	79	3.2	78	86	4	335	26	27	15	30	1.96
78688--78853	51	3.3	51	80	5	167	28	27	12	31	1.92
78577--79105	181	2.9	183	73	11	535	27	26	14	31	1.95
78911--78986	27	2.8	27	84	7	93	26	32	15	25	1.95
78939--79254	79	4.0	79	81	6	372	27	26	14	31	1.95
78967--79254	157	1.8	158	82	7	379	27	26	14	31	1.95
82616--82662	21	2.2	21	85	7	60	46	23	23	6	1.75

Tables:   1

The End!