Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1139
Parameters: 2 7 7 80 10 50 1000
Length:  9685

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40--77
13
2.9
13
81
11
51
60
0
0
39
0.97
666--726
20
2.9
22
78
11
58
45
0
0
54
1.00
683--726
21
2.1
21
91
8
72
50
0
0
50
1.00
2396--2439
2
22.0
2
100
0
88
50
0
0
50
1.00
3490--3530
2
20.5
2
100
0
82
48
0
0
51
1.00
4891--4928
19
2.1
18
85
14
51
36
2
0
60
1.11
4912--4951
20
2.0
20
85
9
55
50
0
0
50
1.00
5405--5447
20
2.2
20
86
0
59
37
4
13
44
1.65
6102--6148
17
2.9
16
77
22
53
27
2
2
68
1.13
6613--6639
14
1.9
14
100
0
54
48
0
0
51
1.00
6805--6846
2
21.0
2
100
0
84
50
0
0
50
1.00
7247--7290
17
2.5
18
82
14
56
52
0
0
47
1.00
7583--7642
27
2.3
27
79
2
68
21
0
5
73
1.02
7620--7742
9
12.0
10
67
25
55
33
0
2
63
1.13
7638--7725
24
3.4
26
77
19
78
36
0
1
62
1.03
7653--7724
28
2.6
28
82
4
85
36
0
1
62
1.04
7666--7707
20
2.0
21
90
4
68
35
0
2
61
1.09
8033--8070
16
2.4
16
86
4
60
21
0
0
78
0.74
8037--8071
15
2.4
14
86
13
52
22
0
0
77
0.78
8571--8610
18
2.2
18
86
0
53
40
0
2
57
1.12
9094--9159
24
2.6
25
78
7
71
48
0
3
48
1.17
9170--9235
32
2.0
33
85
2
89
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9181--9234
16
3.4
15
77
10
54
53
0
0
46
1.00

Tables:   1

The End!