genome.fa.s1142.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1142
Parameters: 2 7 7 80 10 50 1000
Length:  38790

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22--1232	29	42.3	29	76	14	1033	21	16	32	29	1.95
43--1233	199	6.0	198	76	13	713	21	16	32	29	1.95
2510--2564	1	55.0	1	81	0	65	0	1	7	90	0.51
2510--2562	18	2.9	17	89	10	79	0	1	7	90	0.52
2510--2564	24	2.3	24	90	3	85	0	1	7	90	0.51
2500--2564	11	5.4	11	79	17	67	1	3	7	87	0.70
2500--2569	10	7.1	10	79	14	56	1	2	10	85	0.76
4555--4595	1	41.0	1	100	0	82	100	0	0	0	0.00
13080--13285	78	2.6	79	80	4	220	29	15	30	24	1.96
13240--13308	28	2.5	28	85	0	84	24	17	34	23	1.96
13319--13465	51	2.8	51	82	2	168	33	11	27	27	1.91
13293--13465	52	3.4	51	78	2	184	31	11	28	28	1.92
13397--13576	80	2.3	80	83	6	215	28	15	29	26	1.96
13529--13606	27	2.9	27	84	5	95	25	16	33	24	1.96
13587--13703	51	2.4	51	86	12	156	35	11	21	31	1.90
16073--16098	13	2.0	13	100	0	52	38	15	15	30	1.88
16052--16118	34	2.0	33	91	2	107	44	13	16	25	1.84
16150--16233	19	4.7	19	77	16	99	38	19	11	30	1.88
23751--23798	21	2.3	21	92	0	78	39	14	18	27	1.90
27194--28095	40	22.3	40	73	3	480	39	14	26	19	1.90
27194--27726	81	6.6	81	78	3	414	38	15	27	18	1.91
27194--27691	121	4.1	121	75	3	331	39	15	27	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27744--28019	81	3.4	80	76	7	243	41	13	24	21	1.88
27383--27842	122	3.8	121	75	7	299	39	14	26	19	1.90
27867--28095	122	1.9	122	84	1	307	41	13	24	19	1.88
28799--29674	90	9.9	90	81	4	799	30	14	26	28	1.95
30689--30889	78	2.6	79	82	5	221	29	15	28	26	1.96
30841--30914	28	2.6	28	85	10	98	22	18	33	24	1.97
30900--31025	52	2.4	50	78	7	135	31	11	26	30	1.92
33388--33413	13	2.0	13	100	0	52	38	15	15	30	1.88
33367--33433	33	2.0	33	88	0	98	43	16	14	25	1.86
33453--33520	19	3.9	18	76	23	83	38	14	11	35	1.83
33475--33499	13	1.9	13	100	0	50	32	16	16	36	1.90
33456--33518	32	2.0	32	96	0	117	36	15	12	34	1.86
33574--33630	21	2.7	21	97	0	105	36	19	10	33	1.86
33641--33666	13	2.0	13	100	0	52	15	7	0	76	0.99
34260--35157	55	16.3	55	89	6	1340	20	20	30	28	1.98
34260--35157	110	8.2	110	95	1	1536	20	20	30	28	1.98
34471--34615	26	5.3	26	62	21	73	20	18	32	28	1.96
36137--36197	1	61.0	1	78	0	59	0	4	6	88	0.63
36137--36198	13	4.8	13	86	6	81	0	4	8	87	0.68

Tables:   1

The End!