genome.fa.s1143.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1143
Parameters: 2 7 7 80 10 50 1000
Length:  169065

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2689--2718	15	1.9	16	93	6	53	6	13	3	76	1.11
11514--11549	2	18.0	2	100	0	72	50	0	0	50	1.00
14089--14118	2	15.0	2	100	0	60	50	0	0	50	1.00
16278--16335	23	2.5	22	84	13	73	58	5	1	34	1.30
18096--18157	24	2.5	24	84	5	70	41	24	8	25	1.82
18096--18165	25	2.8	25	85	6	81	44	22	8	24	1.81
18150--18220	27	2.6	27	88	6	99	46	23	7	22	1.76
20104--20149	21	2.1	22	84	4	58	19	30	19	30	1.97
22602--22641	20	2.0	20	90	0	62	37	5	45	12	1.64
22694--22763	25	2.8	25	87	6	90	44	24	8	22	1.81
22748--22818	27	2.6	27	88	6	99	46	23	7	22	1.76
26163--26214	27	1.9	27	88	7	79	40	9	21	28	1.84
31363--31394	13	2.5	13	94	0	55	75	3	9	12	1.16
33312--33381	24	2.9	24	93	0	113	48	25	7	18	1.73
33345--33440	27	3.7	27	87	4	126	45	21	10	21	1.82
37881--37926	24	1.9	25	91	8	78	45	26	10	17	1.81
37883--37984	27	3.9	28	81	6	99	47	24	9	18	1.79
38530--38602	27	2.8	26	87	4	101	26	6	16	50	1.70
40210--40266	22	2.6	22	80	5	62	54	1	33	10	1.45
43850--43920	33	2.2	33	84	5	90	52	7	4	36	1.48
44180--44221	21	2.0	21	86	9	59	28	2	2	66	1.16
44184--44239	21	2.6	21	82	2	58	33	5	1	58	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46715--46780	27	2.4	27	85	12	82	25	7	19	46	1.76
49356--49401	21	2.1	22	84	4	58	30	19	30	19	1.97
51286--51356	27	2.6	27	84	6	90	23	7	22	46	1.76
52507--52623	34	3.5	33	88	4	180	40	23	7	28	1.82
56689--56751	19	3.3	19	88	0	81	38	19	14	28	1.90
57058--57240	34	5.4	34	93	1	307	39	24	8	28	1.84
58461--58514	26	1.9	29	85	14	78	31	9	3	55	1.49
60752--60805	23	2.5	22	85	8	74	62	3	0	33	1.12
61966--62117	79	1.9	79	86	0	214	26	33	10	28	1.90
66370--66423	16	3.3	16	76	5	54	35	7	9	48	1.63
68997--69053	23	2.6	21	84	13	78	36	0	0	63	0.95
71663--71691	14	2.0	15	93	6	51	27	3	0	68	1.05
71747--71804	30	2.0	29	86	13	75	51	0	0	48	1.00
71547--71783	122	2.0	121	88	5	354	43	1	1	53	1.16
72001--72027	2	13.5	2	100	0	54	48	0	0	51	1.00
73191--73237	24	2.0	24	86	0	67	27	25	14	31	1.95
73969--74009	21	2.0	21	85	9	57	48	4	4	41	1.46
74678--74723	21	2.1	22	84	4	58	78	0	15	6	0.95
77004--77041	19	2.0	19	100	0	76	36	26	5	31	1.79
78772--78798	13	2.1	13	100	0	54	37	14	22	25	1.93
78799--79057	129	2.0	129	91	0	419	38	10	17	33	1.84
79446--79531	2	43.0	2	100	0	172	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79804--79833	14	2.1	15	93	6	53	83	0	16	0	0.65
81073--81139	32	2.1	32	94	0	116	26	8	13	50	1.71
82338--82487	34	4.5	33	89	2	228	40	26	7	25	1.81
86559--86618	19	3.1	20	90	7	97	30	18	20	31	1.96
86922--87069	34	4.4	33	87	2	206	41	26	6	25	1.80
93835--93875	22	1.9	22	85	5	57	58	0	7	34	1.26
94868--94929	30	2.1	30	100	0	124	16	25	0	58	1.38
96085--96122	6	6.3	6	90	0	58	52	15	0	31	1.43
96302--96328	3	9.0	3	100	0	54	66	0	0	33	0.92
97878--97914	17	2.2	17	100	0	74	45	0	29	24	1.53
108544--108578	15	2.3	15	100	0	70	28	28	14	28	1.95
109710--109748	19	2.1	19	85	9	53	23	5	17	53	1.63
110075--110111	16	2.3	16	85	0	56	75	2	2	18	1.04
115315--115783	166	2.8	163	85	7	624	41	12	9	36	1.75
116597--116626	11	2.6	11	94	5	51	0	26	0	73	0.84
117089--117705	164	3.7	164	85	5	705	51	8	9	29	1.65
120918--120954	11	3.3	11	92	3	56	67	8	10	13	1.41
122378--122423	16	3.1	16	70	23	55	54	0	0	45	0.99
125081--125134	27	2.0	26	82	10	65	44	1	3	50	1.30
125875--125916	22	1.9	22	85	0	57	42	0	0	57	0.99
126085--126187	47	2.2	46	84	8	129	47	0	0	52	1.00
126093--126133	19	2.2	20	82	8	50	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126118--126193	24	2.9	26	75	22	70	50	0	0	50	1.00
126141--126195	14	4.5	13	78	17	64	49	0	0	50	1.00
126657--126705	16	2.8	18	78	12	57	32	2	2	63	1.17
126671--126758	44	1.9	46	84	11	119	39	0	1	59	1.05
132802--132840	16	2.4	16	82	0	51	53	17	5	23	1.63
134094--134119	8	3.2	8	100	0	52	34	0	0	65	0.93
135247--135285	19	2.1	19	85	9	53	53	7	2	35	1.43
135263--135302	20	2.0	20	85	5	53	50	2	2	45	1.28
135787--135828	20	2.1	20	86	8	59	52	0	0	47	1.00
137959--138035	30	2.6	30	79	6	86	32	5	3	58	1.38
137950--138035	30	3.0	28	79	6	84	30	4	3	61	1.33
140160--140210	24	2.0	24	82	14	59	56	7	1	33	1.39
141506--141585	35	2.4	32	81	8	88	43	10	6	40	1.63
141515--141585	17	4.2	17	76	5	72	40	8	7	43	1.62
145847--145943	16	5.8	16	80	9	88	40	14	9	36	1.78
147568--147613	21	2.2	21	100	0	92	19	19	15	45	1.85
148280--148336	28	2.0	28	93	0	96	36	1	7	54	1.38
148816--148996	70	2.6	70	84	2	222	30	16	10	42	1.82
151303--151404	28	3.7	26	70	11	71	38	0	0	60	1.03
151348--151391	20	2.2	20	88	8	63	43	0	0	56	0.99
151348--151411	18	3.7	18	75	25	66	42	0	0	57	0.98
151367--151411	16	2.9	15	75	12	54	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151333--151424	28	3.2	27	73	21	80	44	0	0	55	0.99
151994--152044	25	2.0	25	100	0	102	27	7	41	23	1.82
152765--152800	2	18.0	2	100	0	72	50	0	0	50	1.00
155704--155734	13	2.3	14	94	5	55	41	12	0	45	1.42
163753--163807	1	55.0	1	85	0	74	92	3	3	0	0.45
163753--163807	22	2.5	22	94	5	94	92	3	3	0	0.45
166328--166368	20	2.0	20	85	9	55	80	0	17	2	0.82
166498--166531	18	1.9	18	88	5	52	52	8	2	35	1.47
167306--167356	15	3.4	15	76	23	54	35	0	5	58	1.22
167961--167994	18	1.9	18	94	5	61	52	5	2	38	1.41
168758--168808	15	3.4	15	76	23	54	35	0	5	58	1.22

Tables:   1

The End!