Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1145
Parameters: 2 7 7 80 10 50 1000
Length:  38058

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1076--1137
3
21.0
3
78
3
63
32
32
1
33
1.68
1441--1476
15
2.4
15
90
0
54
38
25
8
27
1.84
2619--2841
79
2.8
77
80
6
232
34
11
24
30
1.90
2778--2895
51
2.3
52
88
1
175
31
11
26
31
1.91
5308--5337
13
2.3
13
94
0
51
40
13
13
33
1.83
5263--5387
62
2.0
63
85
1
171
39
16
16
28
1.90
6587--7292
61
11.8
61
85
4
766
28
20
25
25
1.99
6588--7292
122
5.9
122
86
2
857
28
20
25
25
1.99
7068--7153
27
3.2
27
63
18
70
24
20
29
25
1.99
7240--7413
94
1.9
93
84
6
235
24
18
30
27
1.98
7350--7468
55
2.2
55
87
0
166
22
18
29
29
1.97
7177--7663
149
3.2
148
87
3
636
26
17
29
26
1.98
7487--7603
61
1.9
61
85
0
162
26
17
27
28
1.98
7603--7717
39
2.9
39
93
2
187
29
12
35
22
1.91
8692--8720
12
2.3
13
94
5
51
0
6
6
86
0.72
18889--18913
13
1.9
13
100
0
50
36
16
16
32
1.90
18900--18958
21
2.8
21
100
0
118
33
10
16
38
1.83
18996--19020
13
1.9
13
100
0
50
32
16
16
36
1.90
18975--19040
32
2.0
33
94
2
116
36
16
12
34
1.86
19424--19488
30
2.3
27
76
16
69
32
1
7
58
1.36
19728--19777
11
4.5
11
82
5
64
54
0
4
42
1.19
19729--19774
23
2.0
23
95
0
83
50
0
4
45
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25198--25234
2
18.5
2
100
0
74
51
0
0
48
1.00
26999--27053
3
18.3
3
100
0
110
32
0
0
67
0.91
27208--27282
27
2.9
24
80
11
60
48
2
4
45
1.35
27590--27617
2
14.0
2
100
0
56
50
0
0
50
1.00
32422--32449
2
14.0
2
100
0
56
50
0
0
50
1.00
33165--33193
12
2.3
13
94
5
51
24
3
0
72
1.00
33154--33259
56
1.9
56
94
0
185
25
8
8
57
1.57
33943--33976
17
2.0
17
88
0
50
64
5
0
29
1.17
34866--34955
1
90.0
1
95
0
153
2
0
1
96
0.24
37558--37604
22
2.1
22
84
0
58
38
0
61
0
0.96

Tables:   1

The End!