genome.fa.s1151.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1151
Parameters: 2 7 7 80 10 50 1000
Length:  61959

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6151--6231	37	2.2	35	77	16	83	38	2	0	59	1.11
10686--10720	18	1.9	18	88	0	52	45	2	0	51	1.16
11866--11929	24	2.7	24	83	11	78	59	0	0	40	0.97
11872--11963	32	2.8	33	78	14	95	56	0	0	43	0.99
11872--11952	17	4.9	17	70	22	66	56	0	0	43	0.99
11887--11951	32	2.1	31	88	8	98	56	0	0	43	0.99
11880--11957	40	2.0	40	85	10	106	56	0	0	43	0.99
11899--11952	18	3.2	18	73	23	55	53	0	0	46	1.00
11911--11988	17	4.4	17	74	22	56	53	0	0	46	1.00
13025--13049	2	12.5	2	100	0	50	48	0	0	52	1.00
14155--14266	56	2.0	56	96	0	206	27	18	14	39	1.90
17428--17481	24	2.2	25	83	6	67	25	1	1	70	1.07
17482--17530	16	3.0	16	82	5	53	46	0	0	53	1.00
17482--17530	17	2.9	17	78	6	55	46	0	0	53	1.00
17510--17562	26	2.0	26	85	7	72	60	0	1	37	1.08
19069--19104	2	18.0	2	100	0	72	50	0	0	50	1.00
19277--19310	1	34.0	1	100	0	68	100	0	0	0	0.00
20475--20509	18	2.0	17	88	5	52	40	0	0	60	0.97
22161--22243	3	28.3	3	81	4	62	56	0	0	43	0.99
22414--22446	15	2.1	16	88	5	50	12	21	0	66	1.23
24231--24259	15	2.0	15	93	6	51	27	10	0	62	1.28
25137--25177	21	2.0	21	90	0	64	60	0	0	39	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25908--25993	44	1.9	45	85	2	120	22	24	0	53	1.46
31125--31168	3	14.7	3	100	0	88	34	0	0	65	0.93
37048--37109	29	2.3	27	81	13	74	67	0	0	32	0.91
37065--37112	19	2.6	17	79	20	53	64	0	0	35	0.94
37074--37114	21	2.0	21	90	9	68	58	0	0	41	0.98
37095--37169	8	8.8	8	72	16	53	60	1	0	38	1.06
37096--37201	33	3.2	34	77	15	96	57	0	0	41	1.05
37092--37177	27	2.9	28	76	20	77	56	1	0	41	1.06
37896--37926	15	2.1	15	100	0	62	74	0	0	25	0.82
38257--38281	13	1.9	13	100	0	50	36	0	0	64	0.94
38634--38669	18	1.9	19	88	5	56	63	0	0	36	0.94
38895--38936	2	21.0	2	95	0	75	50	2	0	47	1.14
39242--39289	24	2.0	24	88	8	71	58	0	2	39	1.10
39557--39597	3	13.7	3	100	0	82	34	0	0	65	0.93
40639--40665	4	6.8	4	100	0	54	25	0	0	74	0.83
43249--43277	2	14.5	2	100	0	58	48	0	0	51	1.00
46239--46263	13	1.9	13	100	0	50	16	4	0	80	0.87
46326--46378	25	2.1	24	83	13	63	69	1	1	26	1.09
46369--46442	29	2.4	34	84	13	97	51	2	0	45	1.15
46370--46442	15	4.7	16	71	20	57	50	2	0	46	1.15
46388--46488	15	6.2	16	68	23	52	54	1	0	42	1.18
46398--46458	16	3.8	16	77	12	63	50	3	0	45	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47875--47916	18	2.3	18	87	0	57	52	0	2	45	1.13
48406--48483	35	2.2	37	83	4	106	43	6	2	47	1.42
50983--51012	2	15.0	2	92	0	51	50	3	0	46	1.18
53715--53760	23	2.0	23	91	0	74	34	10	23	30	1.89
53785--53843	10	6.1	9	77	13	55	67	0	0	32	0.91
53801--53890	20	4.9	19	76	15	75	60	0	0	40	0.97
53780--53893	19	6.3	20	71	19	90	59	0	0	40	0.97
53814--53881	18	3.9	18	75	16	63	57	0	0	42	0.98
53815--53890	32	2.3	33	86	4	100	57	0	0	42	0.98
53821--53905	27	3.3	26	73	20	88	55	1	0	43	1.07
53814--53911	52	1.9	51	87	6	144	58	1	0	40	1.05
54736--54917	34	5.4	34	89	0	260	25	7	26	40	1.82
55220--55282	19	3.3	19	90	0	90	28	17	19	34	1.94
59348--59531	34	5.5	34	90	0	273	25	8	26	39	1.84
60547--60633	45	1.9	45	95	0	156	28	27	11	32	1.91
61073--61263	98	1.9	98	88	2	285	22	19	16	40	1.91

Tables:   1

The End!