genome.fa.s1153.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1153
Parameters: 2 7 7 80 10 50 1000
Length:  54064

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
773--810	20	1.9	20	88	0	58	44	10	10	34	1.73
7795--7820	13	2.0	13	100	0	52	30	15	15	38	1.88
8491--8843	49	7.1	49	80	7	347	32	15	26	26	1.95
8602--8843	98	2.5	98	93	4	425	31	16	26	24	1.96
8852--9088	28	8.3	29	78	8	220	19	17	29	33	1.95
8852--9088	57	4.2	58	79	7	229	19	17	29	33	1.95
8837--9088	85	2.9	88	81	6	277	19	18	28	32	1.96
9454--9538	37	2.3	37	93	0	143	44	15	12	27	1.83
10558--10632	8	8.9	8	78	19	66	2	2	12	82	0.87
10558--10621	32	2.0	33	87	9	96	1	1	12	84	0.77
10558--10613	11	5.3	10	81	16	60	1	1	10	85	0.74
10558--10622	15	4.0	15	84	11	76	1	1	12	84	0.76
10559--10631	18	4.3	17	75	16	53	2	2	12	82	0.89
15090--15123	13	2.8	12	86	8	50	85	5	8	0	0.75
16524--16788	93	2.9	94	80	7	278	30	24	14	30	1.95
16994--17268	47	5.9	46	79	9	236	23	21	15	39	1.92
16990--17264	94	2.9	93	78	11	267	23	21	16	39	1.92
17337--17892	85	6.6	83	75	8	331	21	32	12	33	1.91
17508--17747	43	5.6	42	67	14	143	21	32	13	32	1.92
17337--18130	254	3.2	252	77	7	627	21	32	12	34	1.90
17768--17889	42	2.9	42	72	13	115	18	35	13	32	1.90
17752--18046	157	1.9	157	80	6	348	22	32	10	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17919--18221	84	3.6	83	73	9	240	21	29	10	37	1.88
19422--20193	309	2.5	311	78	5	706	25	15	18	40	1.89
19904--20230	153	2.1	155	77	7	338	25	16	15	42	1.88
21192--21264	20	3.6	20	81	3	101	36	13	17	31	1.89
21209--21285	21	3.7	21	77	6	86	42	11	16	28	1.84
21192--21285	41	2.3	41	94	3	163	39	12	18	29	1.88
21324--21349	13	2.0	13	100	0	52	38	15	15	30	1.88
22756--22820	33	2.0	33	85	11	89	30	16	16	35	1.92
22849--22906	19	3.1	18	85	11	80	31	15	18	34	1.93
22890--22916	13	2.1	13	100	0	54	40	14	14	29	1.86
22871--22935	33	2.0	32	87	3	94	38	15	16	29	1.90
31647--31696	20	2.5	19	87	12	66	30	18	16	36	1.92
35607--35657	21	2.4	21	93	0	84	37	3	27	31	1.75
46167--46204	20	1.9	20	88	0	58	44	10	10	34	1.73

Tables:   1

The End!