Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1154
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16451
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Found at i:5236 original size:403 final size:403
Alignment explanation
Indices: 4352--5633 Score: 1917
Period size: 403 Copynumber: 3.2 Consensus size: 403
4342 GAAACCTGTC
* * ** * *
4352 GCGGTGATGGAGACCCTGCGCGGTCCAGGTGATCCGTGGCAAGGTCCCCGGTCGCCGTATGCTGC
1 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCG-C-TACG-TGC
* * ** * * * *
4417 -CGATCGCATGGCACGCGTGTGTGGGGCACAAGGGCGTGGTCGTGCCGTAGGGTTAA-GCTTC-C
63 GCGATCGCTTGGCACGCGTGTGCGGGTAAC-GGGGCGTGGTCGTGCCGGAAGG-CAAGGC-TCGC
* *
4479 ACCTGCGCTGATTCTGCCAAGTTCCCGAATTCGAGTTGGTAGT-CCGGTTGTGGCGTGGGCAGAA
125 ACCTGCGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTGTGGCGTGGGCAGAA
* *
4543 GCTGCAGGTG-GGGCTTGGCCTGGCCATGCCCCGT-GAGCAGGGGCAGTCTCGCGGCCCTTGCTT
190 GCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCC-TCGAGCAGGGGCAGTCTCGTGGCCCTTGCAT
* * * * * *
4606 CGGC-ACGGTGGGCTCGTCCCGCCGGTTGTCTGTCGGGGATTGTGCTCGATGCGCCTGTGCATTG
254 CGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTG-GCATGG
* * * *
4670 ATCGCGCCCCGGCAGAGTGTCCCTCTCGGTTAAGATCCAGGTCGCGCGTGCCTTGCGATCGTGGT
318 TTCGCGCCCCGGC--AGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGT
*
4735 TTTCGGTGGCCGGATGCCCAGCT
381 TTTCGGTGACCGGATGCCCAGCT
* * ** * *
4758 GCGGTGACGG-GACCCTTCGCGGTCCAAGTGATCCGTGGTGAGGCCGTCGGTCTCTGCGTGCGCG
1 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCGCTACGTGCGCG
*
4822 ATCGGTTGGCACGCGTGTGCGGGTAACGGGGCGTGGTCGTGCCGGAAGGCAAGGCTCGCACCTGC
66 ATCGCTTGGCACGCGTGTGCGGGTAACGGGGCGTGGTCGTGCCGGAAGGCAAGGCTCGCACCTGC
* * *
4887 GGTGATGCTGCCAAGTTCCCGAATTCGAGTCGGTAGTCCCGGTTGTGGCGTGGGCCAGAGGCTGC
131 GGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTGTGGCGTGGG-CAGAAGCTGC
*
4952 AGGTGAGGGCTTGGCCTGGCCATGCCCCTCGAGCATGGGCAGTCTCGTGGCCCTTGCATCGGCAA
195 AGGTGAGGGCTTGGCCTGGCCATGCCCCTCGAGCAGGGGCAGTCTCGTGGCCCTTGCATCGGC-A
*
5017 ACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCCTGCGCCTGGCATGGTTCGCG
259 ACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGGTTCGCG
5082 CCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTTCGGTG
324 CCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTTCGGTG
5147 ACCGGATG-CCAGCT
389 ACCGGATGCCCAGCT
5161 GCGGTGATGGAGACCCTACGCGGT-CAAGTGATCCGTGGTGAGGCCCCCGGTCGCTACGTGCGCG
1 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCGCTACGTGCGCG
*
5225 ATCGTTTGGCACGCGTGGTGCGGGTAACGGGGCGTGGTC-TGCCGGAAGGCAAGGCTCGCACCTG
66 ATCGCTTGGCACGCGT-GTGCGGGTAACGGGGCGTGGTCGTGCCGGAAGGCAAGGCTCGCACCTG
*
5289 CGGTGATTCTGCCAAGTT-CCGAATTCGAGTAGGTTTGTCCCGGTTGTGGCGTGGGCAGAAGCTG
130 CGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGG-TAGTCCCGGTTGTGGCGTGGGCAGAAGCTG
*
5353 CAGGTGAGGGCTT-GCCTGGCCATGCCCCTCGGGCAGGGGCAGTCTCGT-GCCCTTGCAGTCGGC
194 CAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGAGCAGGGGCAGTCTCGTGGCCCTTGCA-TCGGC
5416 AACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCCTCCATGCGCCTGGCATGGTTCG
258 AACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCG-CTCCATGCGCCTGGCATGGTTCG
5481 CGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTTCGG
322 CGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTTCGG
5546 TGACCGGATGCCCAGCT
387 TGACCGGATGCCCAGCT
5563 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCGCTACGGTGCGC
1 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCGCTAC-GTGCGC
5628 GATCGC
65 GATCGC
5634 AAGGCTCGCA
Statistics
Matches: 805, Mismatches: 54, Indels: 36
0.90 0.06 0.04
Matches are distributed among these distances:
400 50 0.06
401 139 0.17
402 130 0.16
403 203 0.25
404 123 0.15
405 87 0.11
406 26 0.03
407 47 0.06
ACGTcount: A:0.12, C:0.29, G:0.37, T:0.22
Consensus pattern (403 bp):
GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCGCTACGTGCGCG
ATCGCTTGGCACGCGTGTGCGGGTAACGGGGCGTGGTCGTGCCGGAAGGCAAGGCTCGCACCTGC
GGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTGTGGCGTGGGCAGAAGCTGCA
GGTGAGGGCTTGGCCTGGCCATGCCCCTCGAGCAGGGGCAGTCTCGTGGCCCTTGCATCGGCAAC
GGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGGTTCGCGCC
CCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTTCGGTGAC
CGGATGCCCAGCT
Found at i:5897 original size:359 final size:360
Alignment explanation
Indices: 5273--6363 Score: 1723
Period size: 359 Copynumber: 3.0 Consensus size: 360
5263 CTGCCGGAAG
5273 GCAAGGCTCGCACCTGCGGTGATTCTGCCAAGTT-CCGAATTCGAGTAGGTTTGTCCCGGTTGTG
1 GCAAGGCTCGCACCTGCGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGG-TTGTCCCGGTTGTG
5337 GCGTGGGCAGAAGCTGCAGGTGAGGGCTT-GCCTGGCCATGCCCCTCGGGCAGGGGCAGTCTCGT
65 GCGTGGGCAGAAGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGGGCAGGGGCAGTCTCGT
*
5401 -GCCCTTGCAGTCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCCTCCATG
130 GGCCCTTGCAATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCG-CTCCATG
5465 CGCCTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTG
194 CGCCTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTG
5530 CGATCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAGTGA
259 CGATCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAGTGA
5595 TCCGTGGTGAGGCCCCCGGTCGCTACGGTGCGCGATC
324 TCCGTGGTGAGGCCCCCGGTCGCTACGGTGCGCGATC
5632 GCAAGGCTCGCACCTGCGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTTGTCCCGGTTGTGG
1 GCAAGGCTCGCACCTGCGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTTGTCCCGGTTGTGG
5697 CGTGGGCAGAAGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGGGCAGGGGCAGTCTCGTG
66 CGTGGGCAGAAGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGGGCAGGGGCAGTCTCGTG
5762 GCCCTTGCAATCGGCAACGGT-GGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCG
131 GCCCTTGCAATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCG
5826 CCTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATTAAAAATCCAGGTCGCGCGAGCC-TGC
196 CCTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATT-AAAATCCAGGTCGCGCGAGCCTTGC
5890 GATCGTGGTTTTCGGTGACCGGATGCCCAGCTTGCAGGTTGATGGA-ACCCTACGCGGTCCAAGT
260 GATCGTGGTTTTCGGTGACCGGATGCCCAGC-TGC-GG-TGATGGAGACCCTACGCGGTCCAAGT
*
5954 GATCCGTGGTGGAGGGCCCCCCGGGCGC-ACGGTG-GCCGACTC
322 GATCCGTGGT-GA-GG-CCCCCGGTCGCTACGGTGCG-CGA-TC
* *
5996 GC-AGGCTCG-ACCTGCGGTTGAGTCTGCCAAGTTCCCGAATTCGAGTAGGTTTTCCCGG-TGTG
1 GCAAGGCTCGCACCTGCGG-TGATTCTGCCAAGTTCCCGAATTCGAGTAGGTTGTCCCGGTTGTG
6058 GCG-GGGCAGAAGCTGCAGGTGAGGGCTCTTGGCCTGGCCAATGCCCCTCGGGCAGGGGCAGTCT
65 GCGTGGGCAGAAGCTGCAGGTGAGGG--CTTGGCCTGGCC-ATGCCCCTCGGGCAGGGGCAGTCT
* *
6122 CGTGGCCCTTGCCAGCGGCAACGGTGGGCAACGACGTCCTGCCGGTTTTGCCTGTCGGGGATTGC
127 CGTGGCCCTTGCAATCGGCAACGGTGGG---C-ACGTCCTGCCGG--TTGCCTGTCGGGGATTGC
*
6187 GCTCCATGCG-CTGGCATGG-TCGCG-CCCGGCAGTGTCCATCTCGATTTAAAATCCAGGTCGCG
186 GCTCCATGCGCCTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGA-TTAAAATCCAGGTCGCG
*
6249 CGAGCCTTGCGATCGTGGTTTTCGGTGACCGGATGCCCAGCTGAGGTGATGGGGGGGGAGACCCT
250 CGAGCCTTGCGATCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGAT------GGAGACCCT
6314 ACGCGGTCCAAGTGATCCGT-GTGAGGCCCCC-GTCGCTAAC-GTGCGCGATC
309 ACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCGCT-ACGGTGCGCGATC
6364 TTTTGGCACG
Statistics
Matches: 688, Mismatches: 9, Indels: 61
0.91 0.01 0.08
Matches are distributed among these distances:
359 159 0.23
360 108 0.16
361 72 0.10
362 25 0.04
363 68 0.10
364 61 0.09
365 2 0.00
366 4 0.01
367 2 0.00
368 49 0.07
369 64 0.09
370 14 0.02
371 30 0.04
372 5 0.01
373 25 0.04
ACGTcount: A:0.14, C:0.30, G:0.35, T:0.21
Consensus pattern (360 bp):
GCAAGGCTCGCACCTGCGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTTGTCCCGGTTGTGG
CGTGGGCAGAAGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGGGCAGGGGCAGTCTCGTG
GCCCTTGCAATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCG
CCTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCG
ATCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAGTGATC
CGTGGTGAGGCCCCCGGTCGCTACGGTGCGCGATC
Found at i:9677 original size:358 final size:358
Alignment explanation
Indices: 9020--10094 Score: 2150
Period size: 358 Copynumber: 3.0 Consensus size: 358
9010 GCGTGCCAAA
9020 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
9085 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
9150 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
9215 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
9280 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
9345 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
9378 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
9443 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
9508 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
9573 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
9638 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
9703 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
9736 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
9801 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
9866 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
9931 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
9996 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
10061 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
10094 C
1 C
10095 CTTCCGGCAG
Statistics
Matches: 717, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
358 717 1.00
ACGTcount: A:0.21, C:0.35, G:0.30, T:0.13
Consensus pattern (358 bp):
CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
Found at i:10869 original size:403 final size:403
Alignment explanation
Indices: 9736--11016 Score: 2054
Period size: 402 Copynumber: 3.2 Consensus size: 403
9726 GCGAGCCTTG
9736 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
9801 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
9866 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
*
9931 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
* *
9996 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
10061 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCA-GACCACGCCCCGTTACCCGCA
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
10125 CACGCGTGCCAAA
391 CACGCGTGCCAAA
10138 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
10203 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
10268 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
10333 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
* *
10398 CAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
*
10463 AACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
*
10528 CACGCGTGCCAAC
391 CACGCGTGCCAAA
* * ** * *
10541 CGATCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTC-CCGTCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
* * * *
10605 CCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAACC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
* * * * *
10670 GAGAGGGACACTCTGCCGGGGCGCGATCAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAA
131 GAGAGGGACA--CTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAA
* * * *
10735 CCGGCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCCCCTGCTC-ACGGGGCAT
194 CCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGA-GGGGCAT
10799 GGCCAGGCCAAGCCC-CACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTC
258 GGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTC
* * * * *
10863 GGGAACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGCACGACCACGCCCCTTGTG
323 GGGAACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-GCCTTCCGGCACGACCACGCCCC--GTT
* * **
10926 CCCCACACACGCGTGCCATG
384 ACCCGCACACGCGTGCCAAA
* * ** * *
10946 CGATCG-GCAGCATACGGCGACCGGGGACCTTGCCACGGATCACCTGGACCGCGCAGGGTCTCCA
1 CGATCGCGCA-CGTA--GCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCA
11010 TCACCGC
63 TCACCGC
11017 GACAAGGTTT
Statistics
Matches: 819, Mismatches: 48, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
402 443 0.54
403 181 0.22
404 124 0.15
405 26 0.03
407 36 0.04
408 9 0.01
ACGTcount: A:0.21, C:0.37, G:0.29, T:0.12
Consensus pattern (403 bp):
CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
CACGCGTGCCAAA
Found at i:12177 original size:103 final size:101
Alignment explanation
Indices: 12025--12213 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
12015 CGGCCCGGGG
*
12025 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
12090 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
12126 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
12191 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCGGGTGCGG
12214 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.42, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:12453 original size:64 final size:64
Alignment explanation
Indices: 12374--12495 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
12364 CGTTTGGTTG
*
12374 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
12438 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
12496 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:13003 original size:102 final size:102
Alignment explanation
Indices: 12834--13020 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
12824 GGCCAGGTGC
* *
12834 ACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCG
1 ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
12899 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
66 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
*
12936 ACGGTGCGCGCCCAT-CCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACGCCATGCGGAGCA-
1 ACGGTGCGCGCCC-TGCCCGCCCCCTGGGGT-GGGGGCGGGCGGGGCGCACACCATGCGGAGCAC
12999 CGGTGCGCGCCTCGCCCACCCT
64 CGGTGCGCGCCTCGCCCACCCT
13021 GGGGGGTGCG
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 49 0.61
103 31 0.39
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.10
Consensus pattern (102 bp):
ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
Found at i:13091 original size:64 final size:62
Alignment explanation
Indices: 12931--13106 Score: 168
Period size: 64 Copynumber: 2.8 Consensus size: 62
12921 GCTGCGGGCG
* ** *
12931 GGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGT-CGGGGGCGG-GCGGGGCGCACGCCATGC
1 GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGC-GGGGCGGCGCGGCACGCACGCCAGGC
*
12993 GGAGCACGGTGCGCG-CCTCGCC-CACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCAC-CC-GG
1 GGAGCACGGTGCGCGCCCTC-CCGCCCCCT--GGGGTGCGGGGCGG-CGCGGCACGCACGCCAGG
13054 CC
62 -C
13056 AGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTG-GGGGCGGTCGCGGC
1 -GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGCGGGGCGG-CGCGGC
13107 GCACACCGTG
Statistics
Matches: 96, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
60 7 0.07
61 4 0.04
62 27 0.28
63 17 0.18
64 30 0.31
65 4 0.04
66 7 0.07
ACGTcount: A:0.08, C:0.39, G:0.45, T:0.09
Consensus pattern (62 bp):
GGAGCACGGTGCGCGCCCTCCCGCCCCCTGGGGTGCGGGGCGGCGCGGCACGCACGCCAGGC
Done.