Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1155
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53438
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.33
Found at i:3927 original size:476 final size:476
Alignment explanation
Indices: 1617--15161 Score: 12182
Period size: 476 Copynumber: 28.3 Consensus size: 476
1607 ATTAGGCACT
* * * *
1617 ATAAATGATATTGATCATTTTCTTTTGCATGGAAATCTCTTTTTTTTCCCT-TTTTCCTTATAAT
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT-TTTCTTTGCCCTATTTTCCTTAAAAT
* * * * *
1681 TAAAATTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCATTATTTTCTGGATT
65 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATT
* * * * ** * * *
1746 GGGAACCAAGAACACATTCCGTTCATTAAGATACATGACATTGACACATTGGTGTTGCAAGAAAC
130 GGGAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAT
* * * **
1811 GCTTCT-TTTCC-CTGTTTTTGATAGAATCAAAGTTTGGCTCTTAACTAACCCAAA-AATGAATA
195 GCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAATA
* * *
1873 GTCGAT-CTAATCCCCATTCTTTT-GGGAGTAGGCACCATAAACATAG-CATTCTCATAAGTATA
260 GTC-ATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC-TTCTCATAAGGATA
* * ** * **
1935 CACAATATTGATGCTTTGGTTTTGCAAGAAAGACTTTCTTCCCACCAATTTTCATAAAGTTTGTG
323 CACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* * * *
2000 TTCATGACTCAAATGTGATAAATAGGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
388 TTCATG-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* * *
2065 CTATAAACACATCCTTCTCATTAAG
452 CTATAAACACATTCTCCTCATTAGG
* * * *
2090 ATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCTTAATTTCCATAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * * *
2155 AATGTTCA-CCACTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCAGTCTTTGCAAGTTT
66 AAAGTTCATCC-CTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATT
** * * ** * * *
2219 GGGAACTGAAAATGCATACCCTTTGTTAAGATACATGATATTGATGCTTTAGTGTCGCAAGAAAT
130 GGGAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAT
* * * * * * *
2284 GCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTGAAAGAGGACAAGCAA-GACTA
195 GCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAATA
* * * * *
2348 GTCATACTAATCTCCATTCTTTTCGGGATT-GGCACCATAAACATAGTATTCTCATACGTATACA
260 GTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* * * * ** * * *
2412 TGATACTGGTGCTATGGTTTCATATGAAAGGA-TTTTTTCCCACCAATTTTTGTAAAGTATAAGT
325 CGATATTGATGCTTTGGTTTCGCAAGAAA-GACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
* * * * *
2476 TCATCCTTTAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGACTAAGCAC
389 TCATGC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
*
2541 TATAAACACATTCTCCTCATCAGG
453 TATAAACACATTCTCCTCATTAGG
* * *
2565 ATAAATGATATTGATCATTTTCTTTTGCATGGAAATCCTTTCTTTGCCC--TTTTCATTAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * ** *
2628 AAAATTCATCCCTTAAATAAGATAAGCATCAATTCTAATAATAGTCTCCATTATTTTCAGGATTG
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
* * * * * * * *
2693 GGAACCTATAACACATTCCCTTCGTTAAGATACTTGACATTAACGCTTTGGTGTCGCAAGAAATG
131 GGAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAATG
* * * *
2758 CTTTTCTTTCCCCTGTTTTTGATAGAATCAAAGTTTAG-CTCTTAAATAACACAAA-AAAGAATG
196 CTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTT-GCCTCTTAAATAAGACAAACAATGAATA
* * *
2821 GTCA-ATCAAATCCCCAATCTTTTCAGGATTAGGCACCATAAGCATAGTCTTCTCATAAGGATAC
260 GTCATA-CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* * * *
2885 ACGATATTGACGCTTTGGTTTTGCAAGAAAGCCTTTCTTCCCACCAATTTTTGTAAAGTCTATGT
324 ACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
* *
2950 TCACGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCAC
389 TCATG-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
* *
3015 TATAAACACATTCTCCTTACTAGG
453 TATAAACACATTCTCCTCATTAGG
* *
3039 ATAAATGATATTGATG-TTTT-TTTT-CATGGAAATCTTTCCTTTGCCTTATTTTCCTTAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * *
3101 AAAGTTCATCCCATAAAGAAGACGAGCATCGATTCTCGTAACAATCTCCATTATTTTCAAGA-TC
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
* * * *
3165 GGAACCTAAAACAG-ATTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCGTAAGAAAA
131 GGAACCAAAAAC-GCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAT
* * * *
3229 GCTTTTCTTTACA-TCATTTTTGATAGATTCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAAT
195 GCTTTTCTTTCCACT-GTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAAT
* * * *
3292 AGTCATAC-AATCCCCATTCTTTTCAAGATTAGGCTCCAAAAACATAGTCTTCTCAAAAGGATAC
259 AGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
**
3356 TTGATATTGATG-TTGTGGTATT-GCAAGAAA-AGCTTTCTTCCCACCAATTTTTGTAAAGTCTA
324 ACGATATTGATGCTT-TGGT-TTCGCAAGAAAGA-CTTTCTTCCCACCAATTTTTGTAAAGTCTA
* * **
3418 AGTTCATGCATCAAATGAGATAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAAA
386 AGTTCATGC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* *
3483 CACTATAAACACATCCTCTTCATTAGG
450 CACTATAAACACATTCTCCTCATTAGG
* * ***
3510 ATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGGCCTATTTTAAATAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * ** * * *
3575 AATGTTCACCCCTTAAATAAGACAAGCATCGATTCTCATAACTGTCTCCGGTCTTTTCAAGTTTG
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
* * * * *
3640 GGAACCAAAAATGC-TTACCATTCGTTAGGATACATGACATTGATTCGTTGGTGTCGCAAGAAAT
131 GGAACCAAAAACGCATT-CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAT
* * * * * *
3704 GCTTTTCTTTCCACTGTTTTTGATAGAATCAAATTTTACCTCTGAAATAGGACAAGCAAT-TATA
195 GCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAATA
* * * *
3768 GTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTATTCTCATATGTATACA
260 GTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* ** *
3833 CGATATTGATGCTTTGGTTTTGCAAGAAAGACTTTCTTCCCACCAATTTTCATAAAGTCTGAGTT
325 CGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
* * * * * * *
3898 CGTGACCCAAATGTGACAAACAAGGATTCTAGTAATGATCTTCATTGATTTTGTGATCAAGCACT
390 CATG-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
*
3963 ATAAACACATTCTCCTCATTAGA
454 ATAAACACATTCTCCTCATTAGG
* * * * * * *
3986 AGAAATGATATTGATAATTTTTTTTTACATGAAAATCTTTTCTTTGCCCTATTTTTCATAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * * ** *
4051 AAAGTTTATCTCTTAAATAAGATAGGCATTGATTCTCGTAATAGTCTCCATTCCTTTCAAGATTG
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
* *
4116 GGAACCAAAAA-GACGTTCCCTTCTTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA-
131 GGAACCAAAAACG-CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAT
* **
4179 GCTTTTCTTTGCA-TCGTTTTTGATA-AATTCAAAGTTTATCTCTTAAATAAGACAAAC-ATGAA
195 GCTTTTCTTTCCACT-GTTTTTGATAGAA-TCAAAGTTTGCCTCTTAAATAAGACAAACAATGAA
* * * * * *
4241 TTGTCATACTAATCCCCATTCTTTTTAGGATTAGGCGCCATAAACACAGTCTTCTCA-ATGTGAC
258 TAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAG-GAT
* * * * *
4305 ACATGATGTTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCTACCAATTTTTTGTAAAGTCTA
322 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAA-TTTTTGTAAAGTCTA
* * * * *
4370 AGTTCGTGCATCGAATGAGACAAACATGGATTCTACTAATGATCTTTATTCATTTTGTGATTAGA
386 AGTTCATGC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* *
4435 CACTATAAAAACATTCTCCTCATGAGG
450 CACTATAAACACATTCTCCTCATTAGG
* * *
4462 AT-AA--ATATTGATCATTTTCTTTGGCATGGAAATCTTTTCTTTGCCCT-TTTTCCTTATAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * *
4523 AAAATTCATCTCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCTCCATTATTTTCAAGTTTG
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
* * * *
4588 GGAA-CATAAAGCACATTCCCTTCATTAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAC
131 GGAACCA-AAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAT
* * * * *
4652 GCTTTTCTTTCCCCTGTTTTTGAGAAAATCAAAGTTTGGCTCTTAAATAACACAAA-AATGAATA
195 GCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAATA
* *
4716 GTCA-ACCTAATCCCCATTCTGTTCAGGATTAGGCACCATAAACATAGTCTTCTCATATGGATAC
260 GTCATA-CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* * *
4780 ACGATATTGATGCTTTGGTTTCGCAAGAAAGCCTTTCTTCCCACCAATTTTTGTAAAGTCTATGC
324 ACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
* *
4845 TCATGCCTCAAGTGAGAAAAACATGGATTCTAGTAATATGATCTTCATTCATTTTGTGATTAGGC
389 TCATG-CTCAAATGAGACAAACATGGATTCTAGT-A-ATGATCTTCATTCATTTTGTGATTAGGC
4910 ACTATAAAACACATTCTCCTCATTAGG
451 ACTAT-AAACACATTCTCCTCATTAGG
*
4937 ATAAATGATATTGATGATTTT-TTTTGCAAGGAAATCTTTTCTTT-CCCTTATTTTCCTTAAAAT
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC-TATTTTCCTTAAAAT
* * ** * * * * * *
5000 CAATGTTCATCCCATAAGGATGATAAGCACCGATTATCGTATCAGTCTCCATTATTTTCAGGATC
65 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATT
* * * * * * * *
5065 AGGAACCTAAATCACATGCCCTTCATTAGGATACATGGCATTGAT-ATGTTGGTGTCGTAAGAAA
130 GGGAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCT-TTGGTGTCGCAAGAAA
* * * * *
5129 AGCTTTTCTTTACACTGTTTTTGATAGATTCAATGTTTGTCTCTTAAATAAGACAAAC-ATGAAT
194 TGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAAT
* * * * *
5193 AGTTATACTAATCCCAATTCTTTTCAGGTTTAGGCACCTTAAACATAGTCTTCTCAAAAGGATAC
259 AGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* * * * * *
5258 ACGATATTAATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACAAATCTTGGTAAAGTCTAAGT
324 ACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
* * * * **
5323 TCATGCCTTAAATGAGACAAAAATGGATTCTAGAAAAGATCTTCATTCATTTTGACATTAGGCAC
389 TCATG-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
* * **
5388 TATAAACATATTCTTCCCACCAATTTTTG
453 TATAAACACATTC-T-CC-TC-A-TTAGG
* **** ** * **
5417 -TAAA-GTCTAAGTTCG-TGCA-TCAAATGAGACAAAGTTGG-ATTCTACTAATGATC-TT-CAT
1 ATAAATG-AT-A-TT-GATG-ATTTTCTTTTG-C--A--TGGAAATCT--T--T--TCTTTGCCC
** * * * * * * *
5475 TCATTTTGGGGTTAGGCACTACAAATGTGCCCTCCTCATTAGGATAAATGATATTG-AT-GATTT
50 T-ATTTT--CCTTA--AAAT-CAAA-GT-TCATCC-C-TTA-AAT-AA-GACA-AGCATCGA--T
** * * * *** **** * ** *
5538 TCTTTTGCGTGAA-AAACT--TTTCTTTGCCCTATTTTTCA-TAAAAACAAAGTTCACC--CCTT
99 TC---T-CGT-AACAGTCTCCATTATTTTCAGGATTGGGAACCAAAAACGCA-TTC-CCTTCATT
* ** * * * * * *** * * * *
5597 A-AATA-A-GACA---A-GCATCAGTTCTCGTAATAGTAT-CCAATCTTTTCA-AG-TTTGGAAA
157 AGGATACATGACATTGATGC-TTTGGTGTCGCAAGA-AATGCTTTTCTTTCCACTGTTTTTGATA
* ** * ** * * * * **
5652 CCAA--AAACGCATACC-CTT-CGTCAGGACACATGACATTGATGATTTCGTGTCACAAGAAAT-
220 -GAATCAAA-GTTTGCCTCTTAAAT-AAGACA-A--ACA---ATGA-AT--AGTCA-TACTAATC
* * * * * ** * * * * * * *
5712 -ACTTTTTTTTCCATCGTTTTCG-A-TAGAATCAAAGT-TTGGCTCTTAA--ATAACACAAAAAT
272 CCCATTCTTTT-CA-GGATTAGGCACCATAAACATAGTCTT--CTCATAAGGAT-ACAC-GATAT
** ** ** * * ******* *** * *
5771 AAATAGTCAAACT-AATCCCCATTCTTTTCATGGTTAGGCACCATAAGCATAGTCTTTT-CATAA
331 TGAT-G-C--TTTGGTTTCGCAAGAAAGAC-T--TTCTTC-CC---ACCA-A-T-TTTTGTA-AA
* * *** *** * * *
5834 GTATACACGATATTAATGCTTTGGTTTCACAA-GAAAGACTTTCTTCTCACCAATTTTTGTAAAG
381 GTCTA-A-G---TTCATGC-------TCA-AATG--AGA----C-AAACATGGATTCTAGTAATG
* * * * * *** ** *
5898 -TCTT-AGTTCATGACTCAATGTGACAAATAAGG-ATTCTAGTAGTGATCTCTATTCATTTTGTG
426 ATCTTCA-TTCAT---T--TTGTG----ATTAGGCACTATA-AACACAT-TCTCCTCA-TTAG-G
* * ** ** * * * *
5960 AT-TAGGCACTATAAACACATTTTGCTCCTTTGGAT--AAATGATATTGGTGATTT--TCT-TTT
1 ATAAATG-A-TATTGA-TGATTTT-CT--TTTGCATGGAAAT-CT-TT--T-CTTTGCCCTATTT
* * ** ** * * ** *** * * * * **
6019 GCATGGAAATC--TTTTCTTTGCCTTATTTTCCATAA-AATCAAAGTT-T--TATC--TCTTAAT
55 TCCTTAAAATCAAAGTTC-ATCCCTTAAATAAGACAAGCATC-GA-TTCTCGTAACAGTCTCCAT
*** * * * * * * * * *
6076 TA-AGACAAGCA-T-CGATTCTCATAATAGTCTCCACTCCTTTCAAGATTGGGA-ACCAAAAAGA
117 TATTTTC-AGGATTGGGA-AC-CA-AA-A-AC-GCATTCCCTTC---ATTAGGATA-C---ATGA
*
6137 CATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAAGCTTTTCTTTCCA
168 C-------------------AT----T-GATGCTTTGGTGTCGCAAG-AAATGCTTTTCTTTCCA
**
6202 CTGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAAC-ATGAATACG-C--A--AAT-
208 CTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAATA-GTCATACTAATC
* * * * * ** * * * * * *
6260 -CTATGTCTTAT--GGCTCATG-A--GGAATCAGAG----GT-A-AA--CT-CA-AAT-TCTTAT
272 CCCAT-TCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT-TGAT
* * * ** * * * * * *
6308 CCTTTGGTTTTGCAAGCAAGACTTTCTTCCCACCAATTTTCATAAGGACTGAGTTCGTGACTTAT
335 GCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG-CTCAA
* * * * *
6373 ATGTGACAAATAAGGATTCTAGTAATGATTTTCATTCATTTTGTGATTAGGCACTATAAACATAT
399 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
*
6438 TCTCCTCATTATG
464 TCTCCTCATTAGG
* **
6451 ATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCAAAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * ** * *
6516 AATGTTCACCCCTTAAATAAGAGAAGCATCGATTCTTGTAAAAGTCT-CATGCCTTTTCAAGTTT
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT-TATTTTCAGGATT
* ** * ** * * *
6580 AGGAACTGAAAACGCATACCCTTGGTTAGGGATACATGACATTAATGCTTTGATGTCACAAGAAA
130 GGGAACCAAAAACGCATTCCCTTCATTA-GGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
** * * * *
6645 TGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGCCTCTGAGATAGGACAAACAA-GAAT
194 TGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAAT
* * *
6709 AGTCATACTAATCCCCATTCTTTT-GGGAGTAGGCACCATAAACATAG-CATTCTCATAAGTATA
259 AGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC-TTCTCATAAGGATA
* ** * *
6772 CACGATATTGATGCTTTGGTTTGGCAAGAAAGACTTT-TTCCCACCAATTTTCATAAAGACTGAG
323 CACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* *
6836 TTCATGACTAAAAAATGTGACAAACCA-GGATTCTAGTAATGATCTTCATTCATTTTGTGATTA-
388 TTCATG-CT--CAAATGAGACAAA-CATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * * * *
6899 GCACTATAAACATATTCTCTTTAGTATG
449 GCACTATAAACACATTCTCCTCATTAGG
* * * *
6927 ATAAATGATATTGATGATATTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCATAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
6992 AATGTTCACCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTATTTTCAGGATTG
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
* * * * * *
7057 GGAACCTAGAACACATT-TCTTCCATTAAGATACATGACATTGATGCTTTGGTGTCACAAGAAAT
131 GGAACCAAAAACGCATTCCCTT-CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAT
* * * * * *
7121 GCTTGTCTTTCTC-CCGTTTTTTTATAGAAACAAAGTTTGGCTCTTAAATAACACAAA-AATGAA
195 GCTTTTCTTTC-CACTG-TTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAA
* * * * * *
7184 TAGCCA-ATCTAGTCCCCATTCTTTTCAGGATTAGGCACCGTGAACATAGTCTTCTCTTAAAGAT
258 TAGTCATA-CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
* * * * * *
7248 ACATGATATTGATGCTTTAGTTCCTCAAGAAAGGCTTTCTTCCTACCAATTTTTGTAAAGTCTAA
322 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAA
* * * *
7313 GTTCATGCCTCGAATGAGACAAACATGAAATCT-GATAATGATCGTT-ATTCATTTTGTGATTAA
387 GTTCATG-CTCAAATGAGACAAACATGGATTCTAG-TAATGATC-TTCATTCATTTTGTGATTAG
*
7376 GCACTATAAACATATTCTCCTCATTAGG
449 GCACTATAAACACATTCTCCTCATTAGG
* * * * * *
7404 ATAAATGATATTGATGCTTTTCTTTTGCGTTGAAATCTTTTATTTGCCCTATCTTCCATAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * ** *
7469 AAAGTTTATCTCTTATATAAAGACAAGCGTCGATTCTCGTAATAGTCTTCCATTCCTTTCAAGAT
66 AAAGTTCATCCCTTAAAT-AAGACAAGCATCGATTCTCGTAACAGTC-TCCATTATTTTCAGGAT
* *
7534 TGGGAACCAAAAA-GATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGCCGCAAGAA
129 TGGGAACCAAAAACG-CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
* ** * * * *
7598 A-GCTTTTCTTTACACCATTTTTGATAGATTCAAAGTTTGCCTCTGAAATAGGACAAACCA-GAA
193 ATGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAA
** * ** * * * *
7661 TTCTCATGCTAATCCCTTTATCTTTTCAAGAGTAGGCACCATAAACTTAG-CATTCTCATAAGTA
258 TAGTCATACTAATCCCCAT-TCTTTTCAGGATTAGGCACCATAAACATAGTC-TTCTCATAAGGA
* * * * * ** * *
7725 TACCCAATATTGATCCTTTGGTTTTGCAAGAAAGACTTTCTTCTCACCAATTTTCATAAAGACTG
321 TACACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTA
** * * * *
7790 AGTTTGTGACTTAAATGTGACAAACAAGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGG
386 AGTTCATG-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* *
7855 CACTATAAACATATTCTCCTCATTATG
450 CACTATAAACACATTCTCCTCATTAGG
* * * * *
7882 ATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTCTACCCAATTTTCCATAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * ** * *
7947 AACGTTCACCCCTTAAATAAGACAAGCATTGATTCTTGTAACAGTCTCC-TGCCTTTTCAAGTTT
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT-TATTTTCAGGATT
* * * ** * *
8011 AGGAACTAAAAACGCATACCCTTGGTTAGGGATACATGACATTAATGCTTTGGTGTCACAAGAAA
130 GGGAACCAAAAACGCATTCCCTTCATTA-GGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * * * *
8076 TGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTTGCCTCTGAAATAGGACAAGCAA-GAAT
194 TGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAAT
* * ** *
8140 AGTCATACTAATCCCCATTCTTTTTAGGAGTAGGCACCATATGC-TAG-CATTCTCATAAGTATA
259 AGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC-TTCTCATAAGGATA
* ** * *
8203 CACGATATTGATGCTTTGGTTTTC-CAAGAAAGACTTT-TTCTCACCAATTTTCATAAAGACTGA
323 CACGATATTGATGCTTTGG-TTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAA
* * * *
8266 GTTCGTGACTCAAATGTGACAAACAAGGATTCTAGTACTGATCTTCATTCATTTTGTGATTAGGC
387 GTTCATG-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* *
8331 ACTATAAACATATTCTCCTCATTATG
451 ACTATAAACACATTCTCCTCATTAGG
* * * * *
8357 ATAAATGATATTGATGATATTCTTTTGCGTGGAAATCTTTTCTTTGCCTTATTTTCCATAGAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
8422 AATGTTCACCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAGGATTG
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
* * * * * * * *
8487 GGAACCTAGAACACGTTCCTTTCATAAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAACG
131 GGAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAATG
* * * * *
8552 CTTGTCTTTTCC-CTGTTTTTGATATAAACAAAGTTTGGCTCTTAAATAACACAAA-AATGAATA
196 CTTTTC-TTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAATA
* * * * *
8615 GTCA-ATCTAGTCCCCATTCTTTTCAGGATTCGGCACCGTGAACATAGTCTTCTCTTAAGGATAC
260 GTCATA-CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* ** *
8679 ATGATATTGATGCTTTGG-TTCAGCAAGAAAGGTTTTCTTCCCACCAATTTTTGTAAAGTCTATG
324 ACGATATTGATGCTTTGGTTTC-GCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* * * **
8743 TTCGTGCCTCAAATGAGACAAACATGAAATCCGGTAATGATCTTCATTCATTTTGTGATTAGGCA
388 TTCATG-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
8808 CTATAAACACATTCTCCTCATTAGG
452 CTATAAACACATTCTCCTCATTAGG
* * * *
8833 ATAAATGATATTAATCATTTTCTTTTGCATGGAAATCTTTCCTTTGCCTTATTTTCCTTAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * * * *
8898 AAAGTCCATCCCATAAAGAAGACGAGCATCGATTCTCATAACAGTGTCCATTATTTTCGGGATCG
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
** * * * * * **
8963 AAAACCTAAAACACATTCCTTTCATTAAGATATCAT--CAGTGATGCTTTGGTGTCATAAGAGAA
131 GGAACCAAAAACGCATTCCCTTCATTAGGATA-CATGACATTGATGCTTTGGTGTCGCAAGA-AA
* * * * * *
9026 -GCTTTTCTTTACACCGTTTTT-ATAGATTCATAGTCTGTCTCTTAAATAAGACAAAC-ATGAAT
194 TGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAAT
* * *
9088 AGTCATACTAATCCCCATTCTTTTTAGGATTGGGCACCATAAACATAGTCTTCTCAAAAGGATAC
259 AGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* **
9153 ATGATATTGATGCTTTGGTTTCGCAAGAAAGGGTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
324 ACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
* * *
9218 TCGTGCATCAAAAGAGACAAACATGGATTCTAGTACTGATCTTCATTCATTTTGTGATTAGGCAC
389 TCATGC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
9283 TATAAACACATTCT-CTACATTAGG
453 TATAAACACATTCTCCT-CATTAGG
* * * * *
9307 ATAAATGACATTGATCAGTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-TTTCCCTTATAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
9371 AAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCACTATTTTTTAGGATT
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTA-TTTTCAGGATT
* * * * *
9436 GGAAACCTAAAACACATTCCCTTCTTTTA-GATACATGACATTGATGCTTTGGTGTCACAAGAAA
130 GGGAACCAAAAACGCATTCCCTTC-ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * * * * *
9500 CGTTTTTCTTTCCCCCGTTTTTGAGAGAATCAAAGTTTAG-CTCTTAAATAACACAAA-AATGAA
194 TGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTT-GCCTCTTAAATAAGACAAACAATGAA
* * * * *
9563 TAGTTAAACTAATCCCCATTCTTTTCAGGATTAGGTACCCTAAACATAGTCTTCTCATAAGGATT
258 TAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
* *
9628 CATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG-CATAA
323 CACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTC-TAA
*
9692 GTTCATGCTTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGC
387 GTTCATGC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * *
9757 ACTATAAACATATTCTCCTTACTAGG
451 ACTATAAACACATTCTCCTCATTAGG
* * * * * *
9783 ATAAAAGATATTGAT-ATTTTTTTTTTGCATGGAAATATTTCCTTTGCCTTGTTTTCCTTAAAAT
1 ATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * * * *
9847 TAAAATTCATCCCATGAAA-AAGAGAAGCATAGATTCTCGTAGCAGTATCCATTATTTTCAGGAT
65 CAAAGTTCATCCC-TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGAT
** * * * * **
9911 CAGGAACCTAAAACACATTCCCTTCACTAGGATACATGACATTGATACTTTGGTGTCATAAGAAA
129 TGGGAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * * * *
9976 AGCTTTTCATTACA-TCGTTTTTGATAGATTCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAA
194 TGCTTTTCTTTCCACT-GTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAA
* * * * *
10039 TAGTCATACTAATCCACATTCTTTT-GGAGATTAGGCACCAT----TTA--CATCTCAAAAGGAT
258 TAGTCATACTAATCCCCATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
* * *
10097 ACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAA
322 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAA
* * * **
10162 GTTCGTGCATCAAATGACACAAACATGGATTCTACTAATGATCTTCACACATTTTGTGATTAGGC
387 GTTCATGC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* *
10227 ACTATAAACACATCCTCCTCATTAGA
451 ACTATAAACACATTCTCCTCATTAGG
* * *
10253 ATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCAATTTTCCTTAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * **
10318 AAAGTTCATCCCATAAAGAAGACAAGCATCGATTCTTGTAACAATCTCCATTATTTTCAGGATCA
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
* * * * * * * * * *
10383 AGAACCTAAAACACAATCCCTTCATTAAGATACATGACATTGATACTTTAGTATCGTAAGAAAAG
131 GGAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAATG
* ** ** * ** *
10448 CATTTCTTTATACCATTTTTGATAGATTCAAAGTTTTTCTCTTAAATAAGACAAA-TATGAATAG
196 CTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAATAG
* * ** * * *
10512 TGATACTAATCCCCATTCTTTTCGGGATTAGGTGCCATAAACATTGTCTTCTCAAAAGGATACAT
261 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
*
10577 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTGCCCACCAATTTTTGTAAAGTCTAAGTT
326 GATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTT-CCCACCAATTTTTGTAAAGTCTAAGTT
* * *
10641 CATGCATCAAATGACACAAAAATGGATTCTAGTAATGTTCTTCATTCATTTTGTGATTAGGCACT
390 CATGC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
** * *
10706 ATAAACATGTCCTTCTCATTAGG
454 ATAAACACATTCTCCTCATTAGG
* * * *
10729 ATAAATGACATTGATGATTTTCTTTTGCAT-GAAA-CTATTTCTTTTGCCTTATTTTTCTTGAAA
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT-TTTC-TTTGCCCTATTTTCCTTAAAA
* * ** *
10792 TCATAGTTCATCCCTTAAAGAAGACAAGCATCGATTCTCGTAACAGTCTAAATTATTTTTAGGAT
64 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGAT
*** * * * * ** *
10857 CAAGAACCTAAAACTCATTCCCTTTATTAGGATACATGACATTGATACTTTGGTGTCATATGAAA
129 TGGGAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * * * *
10922 AGCTTTTCTTTCTA-TCGTTTTCGATAGAATCAAAGTTTGCCTCTGAAATAGGACAAACAA-GAA
194 TGCTTTTCTTTCCACT-GTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAA
* * *
10985 TAGTCATACTAATCCCCATTCTTTT--GGAAATTGGGCACCATAAACATAGTATTCTCATAAGTA
258 TAGTCATACTAATCCCCATTCTTTTCAGG--ATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * *
11048 TACACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACTAATTTTTATAAAGTCTG
321 TACACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTA
* * * *
11113 AGCTCATGACTCAAATGTGACAAATAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
386 AGTTCATG-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* *
11178 CACTATAAACACATCCTCCTCTTTAGG
450 CACTATAAACACATTCTCCTCATTAGG
* * * * *
11205 ATAAATGATGTTGAAGATTTTCTTTTGCTTGGAAATCTTTTCTTTGCCCTATTTTTCATAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * * * * * * *
11270 AATGTTAACCCCTTAAATAAGACAAGCATTGATTCTCATAATAGTCTCCAGTCTTTGCATGTTTG
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
* * *
11335 GGAATCAAAAATGCATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAATG
131 GGAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAATG
* * * * *
11400 CTTTTCTTTCTA-TCGTTTTCGATGGAATCAAAGTTTGCCTCTAAAATAAGACAAGCAA-GAATA
196 CTTTTCTTTCCACT-GTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAATA
* * * * * * *
11463 GCCATAGTAATCCCTATTCTTTTCGGGATTAGGCACCATAAACATAGTATTGTCATAAGTATACA
260 GTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* * ** *
11528 CGATATTGGTGCTATGGTTTTACAAGAAAGGA-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGT
325 CGATATTGATGCTTTGGTTTCGCAAGAAA-GACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
* * * *
11592 T-ATCCTTCAAATGAGACAAACATAGATTCTAGTAATAATCTTCATTTATTTTGTGATTAGGCAC
389 TCATGC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
*
11656 TATAAACACCTTCTCCTCATTAGG
453 TATAAACACATTCTCCTCATTAGG
* * *
11680 ATAAATGATATTGATCATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT-TTTTCCTTATAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
11744 AAAATTCATCCCTTTAATAAGACATGCATCGATTCTCGTAACTGTCTCCATTATTTTCAGGATTG
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
* * * * *
11809 GGAACCTAGAACACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAACG
131 GGAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAATG
* * * *
11874 CTTTTCTTTCC-CTCGATTTTGATAGAATCAAAGTTTGGCTCTTAAAT-A-ACAAAAAAGGGAAT
196 CTTTTCTTTCCACT-GTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAA-TGAAT
* *
11936 AGTTGA-ACTAATCCCCATTCCTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
259 AG-TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
* * * *
12000 TACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAGAGTCTAAG
323 CACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* *
12065 TTCATGCCTCAAATGAGACAAACATGGATTTTAGTAATGATCTTCATTCATTTTGTCATTAGGCA
388 TTCATG-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
*
12130 CTATAAACACATTCTCCTTATTAGG
452 CTATAAACACATTCTCCTCATTAGG
* * * *
12155 ATAAATGATATTAATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTTCTTAAGATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * *
12220 AATGTTCATACCTTAAATAAAACAAGCATCGATGCTCGTAACAGTCTCCATTGTTTTTAGGATTG
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
* * * * * *
12285 GGAACCTAAAACACATTCCCTTCAATTA-GATACATGACAATAATGCTTTGGTGTCGTAAGAAAA
131 GGAACCAAAAACGCATTCCCTTC-ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAT
* ** * * * *
12349 GCTTTTCTTTACACTGCCTTTGATTGATTCAAAGTTTGTCTTTTAAATAAGACAAAC-ATGAATA
195 GCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAATA
* * * * *
12413 GTCATACTAATCCCCATTCTTTTCAAGATTAAGCGCCATAAACCTAGTCTTCTCAAAAATGG-TA
260 GTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-ATAA-GGATA
* * * **
12477 CATGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCATTAATTTTTGTAAAGTCTAAG
323 CACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* * *
12542 TTCATACCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATTCATTTTTTGATTAGGCA
388 TTCAT-GCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* *
12607 TTATAAACACATCCTCCTCATTAGG
452 CTATAAACACATTCTCCTCATTAGG
12632 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTCC-ATTTTCC-----AT
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAAT
* * * * * * * * *
12691 ----GTTCACCCCTTAAATAAGACAAACATTGATTTTGGTAACAGTCTCCAATCTTTTCAAGTTT
65 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATT
* * * * *
12752 GGGAACTGAAAAATGCATACCCTTCAATAGGATACATGA-TTTGATGCTTTGGTGTCGCAAGAAA
130 GGGAAC-CAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* ** * * *
12816 TGCTTTTTCCTTCCACCATTTTCGATAGAATCAAAGTTTGCCTCTGAAATAGGACAAACAA-GAA
194 TGC-TTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAA
** * * * *
12880 TAGTCATACTAATCCCCATTCTTTTTTGAATTAGGCACCATAAACATAGTATTCTCATCAGTATA
258 TAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
* * * *
12945 CACGATATTGATGCTTTGGTTTGGCAAGAAAGACTTTCTTCCCA--ATATTTTTCATAAAGTTTG
323 CACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCA-ATTTTT-GTAAAGTCTA
* * *
13008 AGTTCGTGACTCAAATGTGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
386 AGTTCATG-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* * *
13073 CACTATAAATACATTATCCTCCTTAGG
450 CACTATAAACACATTCTCCTCATTAGG
** * *
13100 ATAAATGATATTGATGATTTTCTTTTGCATTAAAATATTTTCTTTGCCCTATTTTCCATAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * * * *** *
13165 AAAGTTTATCTCTTATATAAGACAAGCGTCGATTCTTGTAATAGTCTTCTATTCCCTTCAAGATT
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC-TCCATTATTTTCAGGATT
* ** * * * *
13230 GGGAACCAAAAA-GACATTCCCAAT-ATTTTGATGCATGACATTGATGATTAGGTGTCACAAGAA
130 GGGAACCAAAAACG-CATTCCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
* * * * *
13293 AAGCTTTTCTTTCCA-TCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAAC-ATCA
193 ATGCTTTTCTTTCCACT-GTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGA
* * * * * *
13356 ATACTCAAACCAATCCCCATTCTTTTCAGGATTAGGAACCATTAACATAGTATT-TCAGT-AGGA
257 ATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGA
** * * *
13419 TACACGATATTGGCGCTATGGTTTCACAAGAAATGA-TTTTTTCCCACCAATTTTTGTAAAGTCT
321 TACACGATATTGATGCTTTGGTTTCGCAAGAAA-GACTTTCTTCCCACCAATTTTTGTAAAGTCT
13483 AAGTTCATGCTTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
385 AAGTTCATGC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
13548 GCAC-ATAAACACATTCTCCAT-ATTAGG
449 GCACTATAAACACATTCTCC-TCATTAGG
* * * * *
13575 ATAAATGATATTGCTCAGTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-TTTTCCTTATAATA
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
*
13639 AAAATTCA-CCCTTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTTCAGGAT
66 AAAGTTCATCCC-TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTA-TTTTCAGGAT
* * * * * * *
13703 TGGGAACCTAAAACACATTCCTTTCTTTTA-AATACAAGACATTGATGCTTTGGTGTCACAAGAA
129 TGGGAACCAAAAACGCATTCCCTTC-ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
* * *
13767 ACGCTTTTCTTTCTC-CTGTTTTTTATAGAATCAAAGTTTGGCTCTTAAATAAGACAAA-AATGA
193 ATGCTTTTCTTTC-CACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGA
* * * * *
13830 ATAGTCAAACTAATCTCCATTCTTTTCAAGAATAGGCACGATAAACATAGTCTTCTCATAAGGAT
257 ATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
* *
13895 ACACGATATTGATGCTTTGGTTTCGTAAGAAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA
322 ACACGATATTGATGCTTTGGTTTCGCAAG-AAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTA
*
13960 AGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGACTAGG
386 AGTTCATG-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* *
14025 CACTATAAACACATTCTCCACATTAGA
450 CACTATAAACACATTCTCCTCATTAGG
* * * * * * * * *
14052 ATAAATAATATTGATCAGTTTCGTTTGCATAGAAATCTTTTTTTTGCCCT-TTTTCCTTATAGTA
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
14116 AAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTATTTTTCAGGATT
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTA-TTTTCAGGATT
* * * * * * *
14181 AGGAACCTAAAACACATTCCCTTCTTTTA-GATACATAACATTGACGCTTTGGTGTCACAAGAAA
130 GGGAACCAAAAACGCATTCCCTTC-ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * *
14245 TGC-TTTCTTTCCA-TCATTTTTGATAGAATCAAAGTTTGCCTCTGAAATAGGACAAACAA-GAA
194 TGCTTTTCTTTCCACT-GTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAA
* * * * * *
14307 TAGTCATACTACTCCCCATTCTTTTCGGGATTAGGTACCATAAACATAGTATTCTCGTAAGTATA
258 TAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
* * *
14372 CACGATATTGATGCTTTGGTTTCGTAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTTTTAG
323 CACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
** * * * *
14437 TTTGTGACTCAAATGTGACAAATAAGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCA
388 TTCATG-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
14502 CTATAAACACATTCTCCTTC-TTAGG
452 CTATAAACACATTCTCC-TCATTAGG
* * *
14527 ATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTCGCCCTATTTTCCATAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * * ** *
14592 AAAGTTTATCTCTTATATAAGACAAGCATTGATTCTTGTAATAGTCTCCATTCCTTTCAAGATTG
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
* * *
14657 GGAACCAAAGA-GACA-T---TTCACTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
131 GGAACCAAAAACG-CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAT
* * *
14717 GCCTTTCTTTCCA-TCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATTAAT
195 GCTTTTCTTTCCACT-GTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAAT
* * * * * * *
14780 ACTCGTACTAATCCCCATTCTTTTTAGGATTAGGCTCCATAAACATAGTCTTTTCATTAGCATAC
259 AGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* * * * * * ** *
14845 ACGATATTGGTGCTATGGTTTCACAAGAAAAATTTTTTTCCCACCAATTTTTGCCAAGTCTAAGC
324 ACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
* *
14910 TAATGCTTCAAATGAGAGAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
389 TCATGC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
**
14975 TATAAACGTATTCTCCTCATTAGG
453 TATAAACACATTCTCCTCATTAGG
* * * **
14999 ATAAATGATATTGATCATTTTCTTTTGCATGAAAATATTTTCTTTGCCCT-TTTTCCTTGTAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * *
15063 AAAATGCATCCCTTAAAAAAGGCAAGCATCGATTCTCGTTACAGTCTCCATTATTTTTAGGATTG
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
* * ** * *
15128 GGAACCTAGAATACATTCCCTTCACTAAGATACA
131 GGAACCAAAAACGCATTCCCTTCATTAGGATACA
15162 AGTCCTAATT
Statistics
Matches: 10709, Mismatches: 1875, Indels: 974
0.79 0.14 0.07
Matches are distributed among these distances:
456 1 0.00
457 58 0.01
458 17 0.00
459 2 0.00
461 3 0.00
462 5 0.00
463 9 0.00
464 1 0.00
466 7 0.00
467 9 0.00
468 262 0.02
469 118 0.01
470 407 0.04
471 336 0.03
472 594 0.06
473 678 0.06
474 1212 0.11
475 1556 0.15
476 2963 0.28
477 1006 0.09
478 758 0.07
479 74 0.01
480 7 0.00
481 5 0.00
482 8 0.00
483 4 0.00
484 3 0.00
485 7 0.00
486 23 0.00
487 20 0.00
488 15 0.00
489 8 0.00
490 10 0.00
491 16 0.00
492 9 0.00
493 11 0.00
494 8 0.00
495 7 0.00
496 13 0.00
497 12 0.00
498 10 0.00
499 21 0.00
500 5 0.00
502 16 0.00
503 19 0.00
504 12 0.00
505 27 0.00
506 28 0.00
507 15 0.00
508 8 0.00
509 9 0.00
510 2 0.00
512 3 0.00
513 2 0.00
515 4 0.00
516 5 0.00
517 4 0.00
518 7 0.00
519 10 0.00
520 9 0.00
521 6 0.00
522 4 0.00
523 6 0.00
524 7 0.00
525 5 0.00
526 6 0.00
527 5 0.00
528 3 0.00
529 4 0.00
530 11 0.00
531 4 0.00
532 7 0.00
533 5 0.00
534 2 0.00
535 3 0.00
536 11 0.00
537 13 0.00
538 3 0.00
539 5 0.00
540 1 0.00
541 7 0.00
542 7 0.00
543 5 0.00
544 17 0.00
545 14 0.00
546 2 0.00
547 2 0.00
548 4 0.00
549 4 0.00
550 1 0.00
551 1 0.00
553 1 0.00
554 1 0.00
555 1 0.00
556 4 0.00
559 10 0.00
560 13 0.00
561 3 0.00
562 11 0.00
563 11 0.00
564 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAGGATTG
GGAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAATG
CTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAATGAATAG
TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
GATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
ATGCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
AAACACATTCTCCTCATTAGG
Found at i:5495 original size:106 final size:106
Alignment explanation
Indices: 5292--5482 Score: 283
Period size: 106 Copynumber: 1.8 Consensus size: 106
5282 AAGAAAGGCT
* * *
5292 TTCTTCCCACAAATCTTGGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAAAATGGATTCTAGA
1 TTCTTCCCACAAATCTTGGTAAAGTCTAAGTTCATGCATCAAATGAGACAAAAATGGATTCTACA
5357 AAAGATCTTCATTCATTTTGACATTAGGCACTATAAACATA
66 AAAGATCTTCATTCATTTTGACATTAGGCACTATAAACATA
* * * * ** *
5398 TTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAAATGAGACAAAGTTGGATTCTACT
1 TTCTTCCCACAAATCTTGGTAAAGTCTAAGTTCATGCATCAAATGAGACAAAAATGGATTCTACA
*
5463 AATGATCTTCATTCATTTTG
66 AAAGATCTTCATTCATTTTG
5483 GGGTTAGGCA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
106 74 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (106 bp):
TTCTTCCCACAAATCTTGGTAAAGTCTAAGTTCATGCATCAAATGAGACAAAAATGGATTCTACA
AAAGATCTTCATTCATTTTGACATTAGGCACTATAAACATA
Found at i:19623 original size:33 final size:33
Alignment explanation
Indices: 19583--19645 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
19573 CCTCTCTCTA
*
19583 TTATCTCTCCTATCTCTCCTCCTATCATCCATC
1 TTATCTCTACTATCTCTCCTCCTATCATCCATC
19616 TTATCTCTACTATCTCTCCTCCTATCATCC
1 TTATCTCTACTATCTCTCCTCCTATCATCC
19646 CTCCTATTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.16, C:0.41, G:0.00, T:0.43
Consensus pattern (33 bp):
TTATCTCTACTATCTCTCCTCCTATCATCCATC
Found at i:19665 original size:33 final size:33
Alignment explanation
Indices: 19584--19652 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
19574 CTCTCTCTAT
* *
19584 TATCTCTCCTATCTCTCCTCCTATCATCCATCT
1 TATCTCTACTATCTCTCCTCCTATCATCCATCC
*
19617 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
1 TATCTCTACTATCTCTCCTCCTATCATCCATCC
19650 TAT
1 TAT
19653 TTCTTGTTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.16, C:0.42, G:0.00, T:0.42
Consensus pattern (33 bp):
TATCTCTACTATCTCTCCTCCTATCATCCATCC
Found at i:21778 original size:12 final size:11
Alignment explanation
Indices: 21759--21822 Score: 55
Period size: 12 Copynumber: 5.9 Consensus size: 11
21749 AGAGAACGAA
21759 GAGATAGGAGG
1 GAGATAGGAGG
21770 GATGATAGGA--
1 GA-GATAGGAGG
*
21780 GAGATAGTA--
1 GAGATAGGAGG
21789 GAGATAGGAGG
1 GAGATAGGAGG
*
21800 GATAATAGGAGG
1 GA-GATAGGAGG
21812 AGAGATAGGAG
1 -GAGATAGGAG
21823 AGATAATAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
9 14 0.32
10 2 0.05
11 4 0.09
12 22 0.50
13 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.45, T:0.14
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:21791 original size:9 final size:9
Alignment explanation
Indices: 21758--21827 Score: 56
Period size: 9 Copynumber: 7.8 Consensus size: 9
21748 AAGAGAACGA
21758 AGAGATAGG
1 AGAGATAGG
21767 AGGGATGATAGG
1 A--GA-GATAGG
*
21779 AGAGATAGT
1 AGAGATAGG
21788 AGAGATAGG
1 AGAGATAGG
*
21797 AGGGATA--
1 AGAGATAGG
* *
21804 ATAG-GAGG
1 AGAGATAGG
21812 AGAGATAGG
1 AGAGATAGG
21821 AGAGATA
1 AGAGATA
21828 ATAGAGAGAG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
6 1 0.02
7 2 0.04
8 3 0.06
9 30 0.64
10 2 0.04
11 2 0.04
12 7 0.15
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.14
Consensus pattern (9 bp):
AGAGATAGG
Found at i:21809 original size:42 final size:42
Alignment explanation
Indices: 21762--21855 Score: 136
Period size: 42 Copynumber: 2.2 Consensus size: 42
21752 GAACGAAGAG
* *
21762 ATAGGAGG-GATGATAGGAGAGATAGTAGAGATAGGAGGGATA
1 ATAGGAGGAGA-GATAGGAGAGATAATAGAGAGAGGAGGGATA
*
21804 ATAGGAGGAGAGATAGGAGAGATAATAGAGAGAGGAGGGATG
1 ATAGGAGGAGAGATAGGAGAGATAATAGAGAGAGGAGGGATA
*
21846 ACAGGAGGAG
1 ATAGGAGGAG
21856 GAGAGAAGAA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
42 45 0.96
43 2 0.04
ACGTcount: A:0.41, C:0.01, G:0.45, T:0.13
Consensus pattern (42 bp):
ATAGGAGGAGAGATAGGAGAGATAATAGAGAGAGGAGGGATA
Found at i:30626 original size:42 final size:42
Alignment explanation
Indices: 30571--30689 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
30561 TTTTTCTCTC
* *
30571 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
30613 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
30655 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
30690 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:30630 original size:12 final size:11
Alignment explanation
Indices: 30604--30679 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
30594 TCTATTATCT
*
30604 CTCCTGTCTCTC
1 CTCCTATCTC-C
30616 CTCCTATCATCC
1 CTCCTATC-TCC
30628 CTCCTATCT--
1 CTCCTATCTCC
*
30637 CTACTATCT--
1 CTCCTATCTCC
*
30646 CTCCTGTCTCTC
1 CTCCTATCTC-C
30658 CTCCTATCATCC
1 CTCCTATC-TCC
*
30670 CTCCTCTCTC
1 CTCCTATCTC
30680 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:30631 original size:24 final size:24
Alignment explanation
Indices: 30595--30680 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
30585 CCTCCTCTCT
* *
30595 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
30619 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
30640 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
30661 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
30681 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:30655 original size:18 final size:18
Alignment explanation
Indices: 30586--30656 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
30576 CCTGTCATCC
* *
30586 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
30604 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
30626 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
30646 CTCCTGTCTCT
1 CTCCTGTCTCT
30657 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:36045 original size:476 final size:476
Alignment explanation
Indices: 34696--40685 Score: 6745
Period size: 476 Copynumber: 12.6 Consensus size: 476
34686 CAGATTTCAC
* *
34696 TAATGATCTTCATTCCTTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * * **
34761 ATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTATCCATAAAATGAAAGTTCGC
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * *
34826 CCCTTAAATGAGGCAAGCATCGATTCTTGT--TAGTCTCCAGCCTCTTCAAGTTTGGGAA-CTGA
131 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCT-A
* * * * *
34888 AAATGCATACCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTT
195 AAACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * *
34953 TCCACCTTTTTTGATAAAATCAAAGTTTGTCGCTGAAATAGGACAAACAAGAATAGTCATACTAA
260 TCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
* * * * *
35018 TCCCCATTCTTTTC-GAGATTAGGCAGCACAAACATAGTATTCTCATAAGTATACACGATATTGT
325 TCCCCATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * * * **
35082 TGCTTTGGTTTTGCAAGAAA-GACTATCTTTCCACTAATTTTCATAAA--C--AGTTCGTG-ACT
389 TGCTTTGGTTTCGCAAGAAAGGA-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCA-T
* *
35141 CAAATGTGACAAACAAGGATTCTAG
452 CAAATGAGACAAACATGGATTCTAG
* * * *
35166 TAATGATCTTCATTCATTTTGTGATTAGACATTATAAACACATCCTCCTTATTAGGATAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * * *
35231 ATTGAT-TTTTTTTTTTGCGT-GAAATTCTTTTTTTTGCCCTATTTTCCATAAAATCAATGTTCA
66 ATTGATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * *
35294 TCCCTTAAATAAGACAAGCATCGATTCTCGTAGTAGTAGTCCCCAATCTTTTCAAGTTTGGGAA-
130 TCCCTTAAATAAGACAAGCATCGATTCTCGTA--A-CAGTCTCCAGTCTTTTCAAGTTTGGGAAC
* * * * * * *
35358 CTGAAAATGCATACCCTTCGTTAGGATACATGAAATTGATTCTTTAGTGTCACAAGAAATGCTTT
192 CT-AAAACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * * * * * *
35423 TCCTTCCACCTTTTTTGTTAGAATCAAAGTTTGCCTCTAAAATAAGACAAGCAAGAATAGTCATG
256 TCTTTCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATA
* * * * *
35488 CTAATCCCTATTCTTTTCTGGATTAGGCACCATTAATATAGTCTTTTCATTAA-GATACACGATA
321 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATA
* * * * * * *
35552 TTGGTGCTATGGTTTCACAAGAAATGATTTTTTCCCACCAATTTTTCTAAAGTCTAAGTTCGTGT
385 TTGATGCTTTGGTTTCGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC
*
35617 ATCAAATAAGACAAACATGGATTCTAG
450 ATCAAATGAGACAAACATGGATTCTAG
* * *
35644 TAATGATCTTCACTCATTTTGTGAATAGGCACTATAAACACATTCTCCACATTAGGATAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * ** * *
35709 ATTGATTAATTTCTTTTGCATGTAAATCTTTTCTTAGCCCT-TTTTCCTTCTAATTAAAATTCAT
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * ** *
35773 CCTTTAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCATTATTTTTCTGGATTGGGAACCTA
131 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAGT-CTTTTCAAGTTTGGGAACCTA
* ** * * * *
35838 AAACACATTCATTTCTTTTA-GATACATTACATTAATGCTTTGGTGTCGCAAGAAACGCTTTTCT
195 AAACGCATTCCCTTC-GTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * *
35902 TTCCCCCTTTTTTGGTAGAATCAAAGTTTGGCTCTTAAATAAGACAAACTTGAATAGTCAAACTA
259 TTCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTA
*
35967 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGA
324 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * * * *
36032 TGCTTTAGTTTCACGAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCA
389 TGCTTTGGTTTCGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCA
* * *
36097 ATTGAGAGAATCATGGATTCTAG
454 AATGAGACAAACATGGATTCTAG
* ** * * * * *
36120 TAATGATCTTCATTCCTTTTGCAATTAAGTATTATAAACACATTCTCCACTTTAGGATAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * * * * *
36185 ATTGATCAGTTTCTTTTGCATAGAAATCTTTTCCTGGCCCT-TTTTCCTTATATTCAAAATTCAT
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * *
36249 CCCTTAAATAAGACAAGCATCAATTCTCGTAATAGTCTCTAGTATTTTTCAGGATTGGGAACCTA
131 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAGT-CTTTTCAAGTTTGGGAACCTA
* *
36314 AAACACATTCCCTTCTTTTA-GATACATGACATTGATGCTTTGGTGTCGCAAGAAACA-CTTTTC
195 AAACGCATTCCCTTC-GTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA-AGCTTTTC
* * * * * * *
36377 TTTCCCCCGTTTTTCATAGAATCAAAGTTTGGCTCTTAAATAACACAAAAATGAATAGTCAAACT
258 TTTCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACT
* * * * *
36442 AATCCCTATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCAAAAGGATACACGATATTA
323 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * * * *
36507 ATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAGAGTCTAAGTTCAT-CCTC
388 ATGCTTTGGTTTCGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATC
36571 AAATGAGACAAACATGGATTCTAG
453 AAATGAGACAAACATGGATTCTAG
* * *
36595 TATTGATCTTCATCCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * * *
36660 ATTGATGATTTT-TTTTGCATGGAAATATTTCCTTGGCCTTGTTTTCCTTAAAATCAAAGCTCA-
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * * * * * **
36723 CCACATAAAAAAAACAAGCATCAATTCTCATAACAGTCTCCATTATTTTCAGGGTAAGGAACCTA
131 CC-CTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCTA
* * * * * * * *
36788 AAATGCATTCCCTTCATTAAGTTACATGACATTGATACATTGGTGTTGTAAGAAAAGCTTTTCTT
195 AAACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * *
36853 TGCA-CTGTTTTTGATAGATTCAAAGTTCGTCTCTTAAATAAGACAAACATGAATAGTCATATTA
260 TCCACCT-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTA
* * * * * * *
36917 ATCCCCATTTTTTTCGGGATTAGGCACCATAAACACAGTATTCTCATGAGTATAAACGATATTGA
324 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
* ** *
36982 TGCTTTAGTTTTACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCA
389 TGCTTTGGTTTCGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCA
* *
37047 AATGACACAAACATGGATTCTAC
454 AATGAGACAAACATGGATTCTAG
* * * * **
37070 CAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACGTCCTCCTTTTTAGGATAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* *
37135 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CTATAAAATAAAATTTCA
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT-TAAAATCAAAGTTCA
* * * *
37199 CCCCTTAAATAAGACAAGCATCCATTCTCGTAGCAATCTCCAGTCTTTTCAAGTTTGGGAA-CTG
130 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCT-
* * * * * *
37263 AAAACGCATACCCTTTGTGAGGATGCATGACATTGATACTTTGGTGTCGTAAGAAAAGCTTTTCT
194 AAAACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * *
37328 TTACACCGTTTTTGATAGATTCAAAGTTTGTCTTTTAAATAAGACAAACATGAAAAGTCATACTA
259 TTCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTA
* * * * *
37393 ATCCCCATTCTTTTCAGGATTAGGCACCATTAACATAGTCTTCTTAAAAGGATGCACAATATTGA
324 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
*
37458 TGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCA
389 TGCTTTGGTTTCGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCA
* *
37523 AATGACACAAACATGGATTCTAC
454 AATGAGACAAACATGGATTCTAG
* * * * *
37546 TAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACGTCCTCCTTATTAGGATTAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * * *
37611 ATTGATGATTTTCTTTTGGATAGAAATATTTTATTTGCCCTATTTTCCATAAAATCAAAATTCA-
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * *
37675 CCCTTTAAATAAGACAAGCATCAATTCTTGTAGCAGTCTCTAGTCTTTTCAAGTTTGTGAACCGA
131 CCC-TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCTA
* * * * *
37740 AATCGCATACCCTTCGTTAGGATACGTGACATTGATGCTTT-GTGTCGCAAGAAATGCTTCTCTT
195 AAACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * *
37804 TCCACCGTTTTTGAAAGAATCAAAGTTT-TCCTCTGAAATAGGACAAACAAGAATAGTCATACTA
260 TCCACCTTTTTTGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAGTCATACTA
* ** * * *
37868 ATCCCCATTCTTTCCAGGATTAGGCACCATAAACGCAGTATTCTCATAAGTATACATGATATTGA
324 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
*
37933 TGCTTTGGTTTCGCAACAAA-GACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATC
389 TGCTTTGGTTTCGCAAGAAAGGA-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATC
* * *
37997 AATTAAGACAAACATGGATTCTAC
453 AAATGAGACAAACATGGATTCTAG
* * *
38021 TAATGATCTTCATTCCTTTTGTGATTAGGCACTATAAACTCATTCTCCTCAATAGGATAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * *
38086 A-TGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCAC
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * ** *
38150 CCCTTAAATGAGGCAAGCATCGATTCTCGTAACAACCTCCAGTCTTTTCAAGTTTGGG-ATCTGA
131 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCT-A
* * ** *
38214 AAATGCATACCCTTCGTTAGGATACATGACATTGATGCTTTGACGTCGCAAGAAATGCTTTT-TT
195 AAACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * * * *
38278 T-CACCTTTTTTGATAAAATCAAACTTTGTCGCTGAAATAGGACAAACAAGAATAGTTAAACTAA
260 TCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
* * * *
38342 TCCCCATTCTTTTC-GAGATTAGGCAGCATAAACATAGTATTCTCATAAGTATACACGATATTGT
325 TCCCCATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * * ** * * *
38406 TGCTTTGGTTTTGCAAGAAA-GACTATCTTCCCACTAATTTTCATAAAGTTTGAGTTCATG-ACT
389 TGCTTTGGTTTCGCAAGAAAGGA-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCA-T
* *
38469 CAAATGTGACAAACAAGGATTCTAG
452 CAAATGAGACAAACATGGATTCTAG
* *
38494 TAATGATCTTCATTCATTTTGTGATTAGGCATTATAAACACATCCTCCTCAATT-GGATAAATGA
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC-ATTAGGATAAATGA
** * *
38558 TATTGATGATTTTCTTTTGTGTGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAATGTTCA
65 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * * *
38623 TGCGTTTAATAAGACAAGCATCGATTCTCGTAGCAGTCTCCAGTCTTTTCAAGTTTGGGAACCGA
130 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCTA
* * * * * * *
38688 AAATGCATGCCTTTCGTTATGATACATGACATTGATTCTTTGGTGTTGTAAGAAAAGCTTTTCTT
195 AAACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * *
38753 TCCACCCTTTTTGTTAGAATCAAAGTTTGCCTCTTAAAATAAGACAAGCAAGAATAGTCATGCTA
260 TCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATGAATAGTCATACTA
* * * *
38818 ATCCCCATTCTTTTCTGGATTAGGCACCATTAACATAGTCATT-TCATTAGGATACACAATATTG
324 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC-TTCTCATAAGGATACACGATATTG
* ** * * * * * * *
38882 CTGCTAGGGTTTCACAAGAAATGATTTTTTCCTC-CCAATATTTGTAATGTCTAAGTTCATGCTT
388 ATGCTTTGGTTTCGCAAGAAAGGATTTCTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCAT
* *
38946 CAAATGGGACAAACATAGATTCTAG
452 CAAATGAGACAAACATGGATTCTAG
* * * *
38971 TAATGATCTTCATTCAGTTTGTGATTGGGCACTATAAACACATTCTCCACATTAGGGTAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * *
39036 ATTGATCAGTTTCTTTTAG-ATGGAAATCTTTTCTTTGCCCT-TTTTCCTTATAATCAAAATTCA
66 ATTGATGATTTTCTTTT-GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * * * * *
39099 TCCCTTAAAAAAGACAAGCATCGATTCTCATAACAATCTCCATTTTTTTCAGGCTTGGGAACCTA
130 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCTA
* ** * * * * *
39164 AAACACATTCATTTC-TTTGAGATACGTGACACTGAAGCTTTGGTGTCGCAAGAAACGCTTTTCT
195 AAACGCATTCCCTTCGTTAG-GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * * * *
39228 TTCCTTCGTTTTTT-ATAGAATCAAAGTTTGGCACCTAAATAAGACAAAAAT-ATATAGTGGA-A
259 TTCC-ACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA-ATAGT-CATA
* * * *
39290 CTAATCCCCATTCTTTTCAAGATTAGGCATCATAAACATAGTCTTCTCATAAAGATACATGATAT
321 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * * *
39355 TCATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCT
386 TGATGCTTTGGTTTCGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCA
* * *
39420 TCAAATGATACAAAGATGGATTCTAT
451 TCAAATGAGACAAACATGGATTCTAG
* * *
39446 TATTAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGGATAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * * *
39511 ATTGATCAGTTTCTTTTGCATGGAAATCTTTTCTTTG-CCTTTTTTCCTTATAGTCAAAATTCAT
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * *
39575 CCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTATTTTTCAGGATTAGGAACCTA
131 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAGT-CTTTTCAAGTTTGGGAACCTA
* * * * * * *
39640 AAACACATTCCCTTCTTTTA-GATAAATGTCATTGAGGCGTTGGTGTTGCAAGAAAAGCTTTTCT
195 AAACGCATTCCCTTC-GTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * * * * * *
39704 TTCCCCCATTTTTGATAGAATCAAAGCTTGGCTCTTAAATAACACAAAAATGAAGAGTCAAACCA
259 TTCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTA
* *
39769 ATCCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTC-CGATAAGGATACATGATATTG
324 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACGATATTG
* * * * * * * * *
39833 AAGCATTGGTTTTGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTAGAGTCTAAGTTCATACCTC
388 ATGCTTTGGTTTCGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATC
39898 AAATGAGACAAACATGGATTCTAG
453 AAATGAGACAAACATGGATTCTAG
* * * *
39922 TAATGATCTTCATTCATTTTGTGGTTAGGCACTATAAACACATTCTCCTTATTATGATAAATGAG
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * * *
39987 ATTGATGATTTTTTTTTGCAAGGAAATATTTTCTTTGCCTTATTTTTCTAAAAATCAAAGTTCAT
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
** * * * * * * * **
40052 CCCACAAAGAAGACACGCATCGATTCTCCTAACAGTCTCCATTATTTTCAGGATCAGGAACCTAA
131 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCTAA
* * * * * * *
40117 AACACATTCCCTTCATTAAGATACATGACATTGATACATTGGTGTTGTAAGAAAAGCTTTTCTTT
196 AACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * * *
40182 ACACCATTTTTGATAGATTCAAAGTTCGTCTCTTAAATAAGACAAACATGAATAGTCATATTAAT
261 CCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
** * * * * *
40247 CCCCATTCTTTTTGGGATTAGGCACCATAAACACAGTATTCTCATGAGTATAAACGATATTGATG
326 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
* * * * *
40312 CTTTGGTTTTGCAAGAAA-GACTTTCTTCCCACCAATTTTCGTAAATTCTGAGTTCGTG-ACTTA
391 CTTTGGTTTCGCAAGAAAGGA-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCA-TCA
* * *
40375 AAAGTGACAAACAAGGATTCTAG
454 AATGAGACAAACATGGATTCTAG
* * * * *
40398 TAATAATCATCATTCATTTTGTGGTTAGGTACTATAAACACATCCTCCTCATTAGGATAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * *
40463 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTTCCCTATTTTCCATAAAATCTATGTTCAC
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* *
40528 CCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCAGTCTTTGCAAGTTTGGGAA-CTGA
131 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCT-A
** * *
40592 AAACGCAAGCCCTTCGTTAGGATACATGACATTGATGCTTTGGAGTCGCAAGAAATGCTTTTCTT
195 AAACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * *
40657 TCCACCATTTTCGATAGACTCAAAGTTTG
260 TCCACCTTTTTTGATAGAATCAAAGTTTG
40686 CCTATGAAAT
Statistics
Matches: 4718, Mismatches: 725, Indels: 148
0.84 0.13 0.03
Matches are distributed among these distances:
468 3 0.00
469 70 0.01
470 65 0.01
472 2 0.00
473 247 0.05
474 798 0.17
475 868 0.18
476 2180 0.46
477 308 0.07
478 150 0.03
479 24 0.01
480 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
CCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCTAA
AACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
CCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
CTTTGGTTTCGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAAA
TGAGACAAACATGGATTCTAG
Found at i:36786 original size:950 final size:952
Alignment explanation
Indices: 34696--40688 Score: 6652
Period size: 950 Copynumber: 6.3 Consensus size: 952
34686 CAGATTTCAC
* *
34696 TAATGATCTTCATTCCTTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * *
34761 ATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTATCCATAAAATGAAAGTTCGC
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTC-A
* * * * * * *
34826 CCCTTAAATGAGGCAAGCATCGATTCTTGT--TAGTCTCCAGCCTCTTCAAGTTTGGGAA-CTGA
130 CCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCT-A
* * * * *
34888 AAATGCATACCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTT
194 AAACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * *
34953 TCCACCTTTTTTGATAAAATCAAAGTTTGTCGCTGAAATAGGACAAACAAGAATAGTCATACTAA
259 TCCCCCTTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAA
* * * * *
35018 TCCCCATTCTTTTC-GAGATTAGGCAGCACAAACATAGTATTCTCATAAGTATACACGATATTGT
324 TCCCCATTCTTTTCAG-GATTAGGCACCATAAACATAGTATTCTCATAAGGATACACTATATTGA
** * * * * **
35082 TGCTTTGGTTTTGCAAGAAAGACTATCTTTCCACTAATTTTCATAAA--C--AGTTCGTG-ACTC
388 TGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCA-TC
* * * *
35142 AAATGTGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACATTATAAACAC
452 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * * * *
35207 ATCCTCCTTATTAGGATAAATGATATTGAT-TTTTTTTTTTGCGT-GAAATTCTTTTTTTTGCCC
517 ATTCTCCCT-TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGCCC
* ** * *
35270 TATTTTCCATAAAATCAATGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAGTAGTAGTC
580 TATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA--A-CAATC
* ** *
35335 CCCA--ATCTTTTCAAGTTTGGGAA-CTGAAAATGCATACCCTTC-GTTAGGATACATGAAATTG
642 TCCAGTAT-TTTTCAAGTTTGGGAACCTGAAAACACATACCCTTCTGTTAGGATACATGACATTG
* * * * * * * *
35396 ATTCTTTAGTGTCACAAGAAATGCTTTTCCTTCCACCTTTTTTGTTAGAATCAAAGTTTGCCTCT
706 ATGCTTTGGTGTCGCAAGAAA-ACTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* * ** * ** * *
35461 AAAATAAGACAAGCAA-GAATAGTCATGCTAATCCCTATTCTTTTCTGGATTAGGCACCATTAAT
770 TAAATAAGACAA-AAATGAATAGTCAAACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAAC
* * * * * * * *
35525 ATAGTCTTTTCATTAA-GATACACGATATTGGTGCTATGGTTTCACAAGAAATGATTTTTTCCCA
834 ATAGTCTTCTCA-AAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCA
* ** *
35589 CCAATTTTTCTAAAGTCTAAGTTCGTGTATCAAATAAGACAAACATGGATTCTAG
898 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* * *
35644 TAATGATCTTCACTCATTTTGTGAATAGGCACTATAAACACATTCTCCACATTAGGATAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * * ** * *
35709 ATTGATTAATTTCTTTTGCATGTAAATCTTTTCTTAGCCCT-TTTTCCTTCTAATTAAAATTCAT
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCA-
* * * * ** *
35773 CCTTTAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCATTATTTTTCTGGATTGGGAACCTA
130 CCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCAGT-CTTTTCAAGTTTGGGAACCTA
* ** * * * *
35838 AAACACATTCATTTCTTTTA-GATACATTACATTAATGCTTTGGTGTCGCAAGAAACGCTTTTCT
194 AAACGCATTCCCTTC-GTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * ** *
35902 TTCCCCCTTTTTTGGTAGAATCAAAGTTTGGCTCTTAAATAAGACAAACTTGAATAGTCAAACTA
258 TTCCCCCTTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTA
*
35967 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGA
323 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATAAGGATACACTATATTGA
* * *
36032 TGCTTTAGTTTCACGAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCA
388 TGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCA
* * * * ** * * *
36097 ATTGAGAGAATCATGGATTCTAGTAATGATCTTCATTCCTTTTGCAATTAAGTATTATAAACACA
453 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * * *
36162 TTCTCCACTTTAGGATAAATGATATTGATCAGTTTCTTTTGCATAGAAATCTTTTCCTGGCCCT-
518 TTCTCC-CTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* * * * * *
36226 TTTTCCTTATATTCAAAATTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAATAGTCTCTAG
582 TTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCAG
* * * *
36291 TATTTTTCAGGATTGGGAACCT-AAAACACATTCCCTTCTTTTA-GATACATGACATTGATGCTT
647 TATTTTTCAAGTTTGGGAACCTGAAAACACATACCCTTCTGTTAGGATACATGACATTGATGCTT
* * *
36354 TGGTGTCGCAAGAAACACTTTTCTTTCCCCCGTTTTTCATAGAATCAAAGTTTGGCTCTTAAATA
712 TGGTGTCGCAAGAAA-ACTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
36419 ACACAAAAATGAATAGTCAAACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAACATAGTCT
776 AGACAAAAATGAATAGTCAAACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* *
36484 TCTCAAAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTT
841 TCTCAAAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTT
* *
36549 TGTAGAGTCTAAGTTCAT-CCTCAAATGAGACAAACATGGATTCTAG
906 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* * *
36595 TATTGATCTTCATCCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * * * *
36660 ATTGATGATTTT-TTTTGCATGGAAATATTTCCTTGGCCTTGTTTTCCTTAAAATCAAAGCTCAC
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCAC
* * * * * * * * **
36724 CACATAAAAAAAACAAGCATCAATTCTCATAACAGTCTCCATTATTTTCAGGGTAAGGAACCTAA
131 C-CTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCTAA
* * * * * * * *
36789 AATGCATTCCCTTCATTAAGTTACATGACATTGATACATTGGTGTTGTAAGAAAAGCTTTTCTTT
195 AACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * * * * *
36854 -GCACTGTTTTTGATAGATTCAAAGTTCGTCTCTTAAATAAGACAAACATGAATAGTCATATTAA
260 CCCCCT-TTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAA
* * * * * * *
36918 TCCCCATTTTTTTCGGGATTAGGCACCATAAACACAGTATTCTCATGAGTATAAACGATATTGAT
324 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATAAGGATACACTATATTGAT
* *
36983 GCTTTAGTTTTACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAA
389 GCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAA
* ** * *
37048 ATGACACAAACATGGATTCTACCAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACGT
454 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* *
37113 CCTCCTTTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
519 TCTCC-CTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * *
37178 TTT-CTATAAAAT-AAAATTTCACCCCTTAAATAAGACAAGCATCCATTCTCGTAGCAATCTCCA
583 TTTCCT-TAAAATCAAAA-TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCA
* * * * *
37241 GT-CTTTTCAAGTTTGGGAA-CTGAAAACGCATACCCTT-TGTGAGGATGCATGACATTGATACT
646 GTATTTTTCAAGTTTGGGAACCTGAAAACACATACCCTTCTGTTAGGATACATGACATTGATGCT
* * * *
37303 TTGGTGTCGTAAGAAAAGCTTTTCTTTACACCGTTTTTGATAGATTCAAAGTTTGTCTTTTAAAT
711 TTGGTGTCGCAAGAAAA-CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * *
37368 AAGACAAACATGAAAAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATTAACATAGTC
775 AAGACAAAAATGAATAGTCAAACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTC
* * *
37433 TTCTTAAAAGGATGCACAATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTT
840 TTCTCAAAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTT
* * *
37498 TTGTAAAGTCTAAGTTCGTGCATCAAATGACACAAACATGGATTCTAC
905 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* * * * *
37546 TAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACGTCCTCCTTATTAGGATTAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * *
37611 ATTGATGATTTTCTTTTGGATAGAAATATTTTATTTGCCCTATTTTCCATAAAATCAAAATTCAC
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCAC
* * * * *
37676 CCTTTAAATAAGACAAGCATCAATTCTTGTAGCAGTCTCTAGTCTTTTCAAGTTTGTGAACCGAA
131 CC-TTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCTAA
* * * * *
37741 ATCGCATACCCTTCGTTAGGATACGTGACATTGATGCTTT-GTGTCGCAAGAAATGCTTCTCTTT
195 AACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * * * *
37805 CCACCGTTTTTGAAAGAATCAAAGTTTTCCTCTGAAATAGGACAAACAAGAATAGTCATACTAAT
260 CCCCCTTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAAT
* ** *
37870 CCCCATTCTTTCCAGGATTAGGCACCATAAACGCAGTATTCTCATAAGTATACA-TGATATTGAT
325 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATAAGGATACACT-ATATTGAT
* * *
37934 GCTTTGGTTTCGCAACAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAA
389 GCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAA
* * * * *
37999 TTAAGACAAACATGGATTCTACTAATGATCTTCATTCCTTTTGTGATTAGGCACTATAAACTCAT
454 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
** *
38064 TCTCCTCAATAGGATAAATGATA-TGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTAT
519 TCTCC-CTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * * * *
38128 TTTCCATAAAATCAAAGTTCACCCCTTAAATGAGGCAAGCATCGATTCTCGTAACAACCTCCAGT
583 TTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCAGT
* * **
38193 -CTTTTCAAGTTTGGG-ATCTGAAAATGCATACCCTTC-GTTAGGATACATGACATTGATGCTTT
648 ATTTTTCAAGTTTGGGAACCTGAAAACACATACCCTTCTGTTAGGATACATGACATTGATGCTTT
** * * * * * * *
38255 GACGTCGCAAGAAATGCTTTT-TTT-CACCTTTTTTGATAAAATCAAACTTTGTCGCTGAAATAG
713 GGTGTCGCAAGAAA-ACTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * *
38318 GACAAACAA-GAATAGTTAAACTAATCCCCATTCTTTTCGAGATTAGGCAGCATAAACATAGTAT
777 GACAAA-AATGAATAGTCAAACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * * * * * *
38382 TCTCATAAGTATACACGATATTGTTGCTTTGGTTTTGCAAGAAAGACTATCTTCCCACTAATTTT
841 TCTCAAAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTT
** * * * * * *
38447 CATAAAGTTTGAGTTCATGACTCAAATGTGACAAACAAGGATTCTAG
906 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* *
38494 TAATGATCTTCATTCATTTTGTGATTAGGCATTATAAACACATCCTCCTCAATT-GGATAAATGA
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC-ATTAGGATAAATGA
** *
38558 TATTGATGATTTTCTTTTGTGTGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAATGTTCA
65 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCA
* * * * * *
38623 TGCGTTTAATAAGACAAGCATCGATTCTCGTAGCAGTCTCCAGTCTTTTCAAGTTTGGGAACCGA
130 -CCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCTA
* * * * * * *
38688 AAATGCATGCCTTTCGTTATGATACATGACATTGATTCTTTGGTGTTGTAAGAAAAGCTTTTCTT
194 AAACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * *
38753 TCCACCC-TTTTTGTTAGAATCAAAGTTTGCCTCTTAAAATAAGACAAGCAAGAATAGTCATGCT
259 TCC-CCCTTTTTTGATAGAATCAAAGTTTGCCTCTT-AAATAAGACAAACAAGAATAGTCATACT
* * * *
38817 AATCCCCATTCTTTTCTGGATTAGGCACCATTAACATAGTCATT-TCATTAGGATACACAATATT
322 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT-ATTCTCATAAGGATACACTATATT
* ** * * * * * * *
38881 GCTGCTAGGGTTTCACAAGAAATGATTTTTTCCTC-CCAATATTTGTAATGTCTAAGTTCATGCT
386 GATGCTTTGGTTTCACAAGAAAGGCTTTCTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCA
* * * *
38945 TCAAATGGGACAAACATAGATTCTAGTAATGATCTTCATTCAGTTTGTGATTGGGCACTATAAAC
450 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * *
39010 ACATTCTCCACATTAGGGTAAATGATATTGATCAGTTTCTTTTAG-ATGGAAATCTTTTCTTTGC
515 ACATTCTCC-CTTTAGGATAAATGATATTGATGATTTTCTTTT-GCATGGAAATCTTTTCTTTGC
* * *
39074 CCT-TTTTCCTTATAATCAAAATTCATCCCTTAAAAAAGACAAGCATCGATTCTCATAACAATCT
578 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCT
* * * * ** * *
39138 CCA-TTTTTTTCAGGCTTGGGAACCT-AAAACACATTCATTTCT-TT-GAGATACGTGACACTGA
643 CCAGTATTTTTCAAGTTTGGGAACCTGAAAACACATACCCTTCTGTTAG-GATACATGACATTGA
* * ** * * * *
39199 AGCTTTGGTGTCGCAAGAAACGCTTTTCTTTCCTTCGTTTTTTATAGAATCAAAGTTTGGCACCT
707 TGCTTTGGTGTCGCAAGAAA-ACTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
** *
39264 AAATAAGACAAAAAT-ATATAGTGGAACTAATCCCCATTCTTTTCAAGATTAGGCATCATAAACA
771 AAATAAGACAAAAATGA-ATAGTCAAACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACA
* * *
39328 TAGTCTTCTCATAAA-GATACATGATATTCATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAC
835 TAGTCTTCTCA-AAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * * *
39392 CAATTTTTGTAAAGTCTAAGTTTGTGCTTCAAATGATACAAAGATGGATTCTAT
899 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* * *
39446 TATTAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGGATAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * * * *
39511 ATTGATCAGTTTCTTTTGCATGGAAATCTTTTCTTTG-CCTTTTTTCCTTATAGTCAAAATTCAT
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCA-
* * * * *
39575 CCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTATTTTTCAGGATTAGGAACCTA
130 CCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCAGT-CTTTTCAAGTTTGGGAACCTA
* * * * * * *
39640 AAACACATTCCCTTCTTTTA-GATAAATGTCATTGAGGCGTTGGTGTTGCAAGAAAAGCTTTTCT
194 AAACGCATTCCCTTC-GTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * * * *
39704 TTCCCCCATTTTTGATAGAATCAAAGCTTGGCTCTTAAATAACACAAA-AATGAAGAGTCAAACC
258 TTCCCCCTTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAA-GAATAGTCATACT
* *
39768 AATCCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTC-CGATAAGGATACA-TGATAT
322 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTC-ATAAGGATACACT-ATAT
* * ** * * * * *
39831 TGAAGCATTGGTTTTGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTAGAGTCTAAGTTCATACC
385 TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCA
*
39896 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGGTTAGGCACTATAAAC
450 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * * * *
39961 ACATTCTCCTTATTATGATAAATGAGATTGATGATTTTTTTTTGCAAGGAAATATTTTCTTTGCC
515 ACATTCTCCCT-TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * * ** * * * *
40026 TTATTTTTCTAAAAATCAAAGTTCATCCCACAAAGAAGACACGCATCGATTCTCCTAACAGTCTC
579 CTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTC
* * * ** * * * *
40091 CATTA-TTTTCAGGATCAGGAACCT-AAAACACATTCCCTTC-ATTAAGATACATGACATTGATA
644 CAGTATTTTTCAAGTTTGGGAACCTGAAAACACATACCCTTCTGTTAGGATACATGACATTGATG
* * * * * * *
40153 CATTGGTGTTGTAAGAAAAGCTTTTCTTTACACCATTTTTGATAGATTCAAAGTTCGTCTCTTAA
709 CTTTGGTGTCGCAAGAAAA-CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * *** *
40218 ATAAGACAAACATGAATAGTCATATTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACACAG
773 ATAAGACAAAAATGAATAGTCAAACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAG
* ** * * * *
40283 TATTCTCATGAGTATAAACGATATTGATGCTTTGGTTTTGCAAGAAAGACTTTCTTCCCACCAAT
838 TCTTCTCAAAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAT
* * * * * * * *
40348 TTTCGTAAATTCTGAGTTCGTGACTTAAAAGTGACAAACAAGGATTCTAG
903 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* * * * *
40398 TAATAATCATCATTCATTTTGTGGTTAGGTACTATAAACACATCCTCCTCATTAGGATAAATGAT
1 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * *
40463 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTTCCCTATTTTCCATAAAATCTATGTTCAC
66 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCA-
* * *
40528 CCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCAGTCTTTGCAAGTTTGGGAA-CTGA
130 CCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCT-A
** * *
40592 AAACGCAAGCCCTTCGTTAGGATACATGACATTGATGCTTTGGAGTCGCAAGAAATGCTTTTCTT
194 AAACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * *
40657 TCCACCATTTTCGATAGACTCAAAGTTTGCCT
259 TCCCCCTTTTTTGATAGAATCAAAGTTTGCCT
40689 ATGAAATAGT
Statistics
Matches: 4234, Mismatches: 729, Indels: 160
0.83 0.14 0.03
Matches are distributed among these distances:
947 40 0.01
948 474 0.11
949 78 0.02
950 1310 0.31
951 924 0.22
952 1170 0.28
953 73 0.02
954 138 0.03
955 23 0.01
956 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (952 bp):
TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCAC
CCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACCTAAA
ACGCATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
CCCCTTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATC
CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATAAGGATACACTATATTGATGC
TTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAAAT
GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
TCCCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
CCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCAGTATT
TTTCAAGTTTGGGAACCTGAAAACACATACCCTTCTGTTAGGATACATGACATTGATGCTTTGGT
GTCGCAAGAAAACTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
AAAATGAATAGTCAAACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCA
AAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA
AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
Found at i:37613 original size:158 final size:159
Alignment explanation
Indices: 36974--37617 Score: 350
Period size: 159 Copynumber: 4.1 Consensus size: 159
36964 GAGTATAAAC
* ** *
36974 GATATTGATGCTTTAGTTTTACAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
1 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTT
* * ** *
37038 CGTGCATCAAATGACACAAACATGGATTCTACCAATGATCTTTATTCATTTT-GTGATTAGGCAC
66 CGTGCATCAAATAACACAAACATGGATTCTACTAATGATCTCCATTC-TTTTCGTGATTAGGAAC
* *
37102 TATAAACACGTCCTCCTTTTTAGGATAAAT
130 TATAAACACGTCCTCCTTATTAGGATGAAT
* ** * * * ** * * * * *
37132 GATATTGATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCTATAAAATAAAAT
1 GATATTGATGCTTTGGTTTCGCA-AGAAAGGCTTTTCTTCCCACCAATTTT-TGTAAAGTCAAAG
*** * * * * ** *** * ** * *
37195 TTCACCCCTTAAATAAGACAAGCATCCATTCT-CGTAGCAATCTCCAGTCTTTTCAAGTTTGGGA
64 TTCGTGCATCAAATAACACAAACATGGATTCTAC-TAATGATCTCCATTCTTTTCGTGATTAGGA
* * * *
37259 ACTGA-AAACGCATAC-CCTT-TGTGAGGATGCAT
128 ACT-ATAAACACGTCCTCCTTAT-T-AGGATGAAT
* * * * * ** * * *
37291 GACATTGATACTTTGGTGTCGTAAGAAAAGCTTTTCTTTACACC-GTTTTTGATAGATTCAAAGT
1 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCACCAATTTTTG-TAAAGTCAAAGT
* * * * * * *
37355 TTGT-CTTTTAAATAAGACAAACATGAAAAGTCATACT-A--ATCCCCATTCTTTTCAG-GATTA
65 TCGTGC-ATCAAATAACACAAACATG--GATTC-TACTAATGATCTCCATTCTTTTC-GTGATTA
* * * * * ** * *
37415 GGCACCATTAACATAGT-CTTCTTAAAAGGATGCAC
125 GGAACTATAAACA-CGTCCTCCTTATTAGGATGAAT
* *
37450 AATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
1 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTT
* *
37514 CGTGCATCAAATGACACAAACATGGATTCTACTAATGATCTTCATTCATTTT-GTGATTAGGAAC
66 CGTGCATCAAATAACACAAACATGGATTCTACTAATGATCTCCATTC-TTTTCGTGATTAGGAAC
*
37578 TATAAACACGTCCTCCTTATTAGGATTAAT
130 TATAAACACGTCCTCCTTATTAGGATGAAT
37608 GATATTGATG
1 GATATTGATG
37618 ATTTTCTTTT
Statistics
Matches: 343, Mismatches: 114, Indels: 58
0.67 0.22 0.11
Matches are distributed among these distances:
155 4 0.01
156 4 0.01
157 4 0.01
158 125 0.36
159 193 0.56
160 7 0.02
161 3 0.01
162 2 0.01
163 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (159 bp):
GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTT
CGTGCATCAAATAACACAAACATGGATTCTACTAATGATCTCCATTCTTTTCGTGATTAGGAACT
ATAAACACGTCCTCCTTATTAGGATGAAT
Found at i:39991 original size:158 final size:156
Alignment explanation
Indices: 39310--40467 Score: 426
Period size: 159 Copynumber: 7.3 Consensus size: 156
39300 TTCTTTTCAA
* * * * * * * * *
39310 GATTAGGCA-TCATAAACATAGTCTTCTCATAAAGATACATGATATTCATGCTTTGGTTTCGCAA
1 GATTAGGCACT-ATAAACACATTCTCCTCAT-TAGATAAATGATATTGAAGCATTGGTTTTGCAA
* * * ** * * * *
39374 GAAAGGCTTT-TTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCTTCAAATGATACAAAGATG
64 GAAAGACTTTCTTT---ACCAATTTTTGTAAATTCAAAGTTCATACCTCAAATGAGACAAACATG
* * *
39438 GATTCTATTATTAATCTTCATTCATTTTGT-
126 GATTCTAGTAATAATCTCCATTCATTTTGTG
* * **
39468 GATTAGGCACTATAAACACATTCTCCACATTAGGATAAATGATATTG-ATCAGTTTCTTTTGCAT
1 GATTAGGCACTATAAACACATTCTCCTCATTA-GATAAATGATATTGAAGCA-TTGGTTTTGCA-
* * * * * * * * * * * *
39532 GGAAA-TCTTTTCTTTGCC-TTTTTTCCTTATAGTCAAAATTCATCCCTTAAATAAGACAAGCAT
63 AGAAAGAC-TTTCTTTACCAATTTTT--GTAAATTCAAAGTTCATACCTCAAATGAGACAAACAT
** * * *
39595 CAATTCTCGTAACAGTCTCCATT-ATTTT-TCAG
125 GGATTCTAGTAATAATCTCCATTCATTTTGT--G
* * * * *
39627 GATTAGGAACCTA-AAACACATTC-CCTTCTTTTAGATAAATG-TCATTGAGGCGTTGGTGTTGC
1 GATTAGGCA-CTATAAACACATTCTCC-TC-ATTAGATAAATGAT-ATTGAAGCATTGGTTTTGC
* * * * *
39689 AAGAAA-AGCTTTTCTTTCCCCCATTTTTGATAGAA-TCAAAGCTTGGC-T--CTTAAATAACAC
62 AAGAAAGA-C-TTTCTTT-ACCAATTTTTG-TA-AATTCAAAG-TT--CATACCTCAAATGAGAC
* * * * **
39749 AAAAATGAAGAGTC-A--AACCAATCCCCATTC-TTTTCAG
119 AAACATG--GATTCTAGTAA-TAATCTCCATTCATTTTGTG
* * * * * * *
39786 AATTAGGCACCATAAACATAGTCTTCC-GATAAGGATACATGATATTGAAGCATTGGTTTTGCAA
1 GATTAGGCACTATAAACACATTC-TCCTCATTA-GATAAATGATATTGAAGCATTGGTTTTGCAA
* * * *
39850 GAAAGGCTTTCTTCCTACCAATTTTTGTAGAGTCTAAGTTCATACCTCAAATGAGACAAACATGG
64 GAAAGACTTTCTT--TACCAATTTTTGTAAATTCAAAGTTCATACCTCAAATGAGACAAACATGG
* *
39915 ATTCTAGTAATGATCTTCATTCATTTTGTG
127 ATTCTAGTAATAATCTCCATTCATTTTGTG
* * * **
39945 G-TTAGGCACTATAAACACATTCTCCTTATTATGATAAATGAGATTGATG-ATTTTTTTTTGCAA
1 GATTAGGCACTATAAACACATTCTCCTCATTA-GATAAATGATATTGAAGCA-TTGGTTTTGCAA
* * * * * * * * **
40008 GGAAATATTTTCTTTGCCTTATTTTTCTAAAAATCAAAGTTCATCCCACAAA-GAAGACACGCAT
64 -GAAAGACTTTCTTTACC-AATTTTTGT-AAATTCAAAGTTCATACCTCAAATG-AGACAAACAT
* ** * * **
40072 CGATTCTCCTAACAGTCTCCATT-ATTTTCAG
125 GGATTCTAGTAATAATCTCCATTCATTTTGTG
* * * * * *
40103 GATCAGGAACCTA-AAACACATTC-CCTTCATTAAGATACATGACATTGATA-CATTGGTGTTGT
1 GATTAGGCA-CTATAAACACATTCTCC-TCATT-AGATAAATGATATTGA-AGCATTGGTTTTGC
* * * * *
40165 AAGAAA-AGCTTTTCTTTACACCATTTTTGATAGATTCAAAGTTCGT-CTCTTAAATAAGACAAA
62 AAGAAAGA-C-TTTCTTTAC-CAATTTTTG-TAAATTCAAAGTTCATAC-CTCAAATGAGACAAA
* * * *
40228 CATGAATAGTC-A-TATTAATCCCCATTCTTTTTG-G
122 CATGGAT--TCTAGTAATAATCTCCATTCATTTTGTG
* * * * * * * *
40262 GATTAGGCACCATAAACACAGTATTCTCATGAGTATAAACGATATTGATGCTTTGGTTTTGCAAG
1 GATTAGGCACTATAAACACATTCTCCTCATTAG-ATAAATGATATTGAAGCATTGGTTTTGCAAG
* * ** * * * * *
40327 AAAGACTTTCTTCCCACCAATTTTCGTAAATTCTGAGTTCGTGA-CTTAAAAGTGACAAACAAGG
65 AAAGACTTTCTT--TACCAATTTTTGTAAATTCAAAGTTCAT-ACCTCAAATGAGACAAACATGG
40391 ATTCTAGTAATAATCAT-CATTCATTTTGTG
127 ATTCTAGTAATAATC-TCCATTCATTTTGTG
* *
40421 G-TTAGGTACTATAAACACATCCTCCTCATTAGGATAAATGATATTGA
1 GATTAGGCACTATAAACACATTCTCCTCATTA-GATAAATGATATTGA
40468 TGATTTTCTT
Statistics
Matches: 727, Mismatches: 193, Indels: 160
0.67 0.18 0.15
Matches are distributed among these distances:
155 1 0.00
156 13 0.02
157 22 0.03
158 291 0.40
159 319 0.44
160 64 0.09
161 12 0.02
162 4 0.01
163 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (156 bp):
GATTAGGCACTATAAACACATTCTCCTCATTAGATAAATGATATTGAAGCATTGGTTTTGCAAGA
AAGACTTTCTTTACCAATTTTTGTAAATTCAAAGTTCATACCTCAAATGAGACAAACATGGATTC
TAGTAATAATCTCCATTCATTTTGTG
Found at i:41878 original size:475 final size:476
Alignment explanation
Indices: 40694--42624 Score: 2252
Period size: 475 Copynumber: 4.1 Consensus size: 476
40684 TGCCTATGAA
* * *** * * **
40694 ATAGTGCTTAATTACAAAATGAATGAAGATTGCTATTAGAATCCACGTTTGTCTCATCTGAGTTA
1 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGGCA
* * ** ** *
40759 AGAACTTAGACTTCATGAAAATTGGTGGG--AAAATGCTTT-TCTTGTAAAGCCAAAACATCAAT
66 CGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAACCTTTCTCATG-AAA-CCAAAACATCAAT
* * * *
40821 ATCGCGTATCATAATGAGAAGACTAT-TTT-TGGTGCCTAGTGCC-AAAAAGAATGGTGATTAGT
129 ATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CCTAAAAAGAATGGGGATTAGT
* * * * *
40883 ATGACTATTCAAGCTAGTCTTATTTAAGA-AACAAACTTTGATTCTATCAAAAATGATGGAAAGA
193 ATGACTATTCATGTTTGTCTCATTTAAGAGAA-AAACTTTGATTCTATCAAAAATGGTGGAAAGA
* *
40947 AAAGCTCTTT-TTGCGATACCAAAGCATCAATGTCATGTATTCTAATGAAAGGAATGTGTTTTAG
257 AAAGCT-TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTAG
* * * ** * *
41011 GTTCCTAATCTTGAAAATAATGGAGATTGTGACAAGGGTCGATGCTT-AACTTATTTATGGGATG
321 GTTCCTAATCTGGAAAATAATGGAGACTGTTACAAGAATCGATGCTTGTA-TTATTTAAGGGATG
* * ** *
41075 AACTTTGACTTCAAGGAAAATAAGGTGAAGAAAAGATTTTCATACAAAAGAAAATCATCAATA-C
385 AACTTTGACTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * *
41139 TATTTATCTTGTTGAGGAGAATGTGTTT
450 -ATTTATCCTATTGAAGAGAATGTGTTT
* * *
41167 ATAGTGCCTAATCATAAAATGAA--AAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCA
1 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGGCA
* * * * * * * *
41230 TGAACTTGGACTTAACAAAAATTGGTGAGAAAAAAACCATTCTTATGAAACCAAAGCAGCAATAT
66 CGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAACCTTTCTCATGAAACCAAAACATCAATAT
* * * * * *
41295 CATGTATCGTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGCATTCGTATG
131 CACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATG
* * * *
41360 ACTATTCTTCTTTGTCTCATATAAGAGACAAACTTTGATTCTATCAAAAATTGG-GGAAA-AAAA
196 ACTATTCATGTTTGTCTCATTTAAGAGAAAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAA
* * *
41423 CCTTTTCTTGTGACACCAAAGCATTAATGTCATGTATCCTAATGAAAGGAATGTG-TTTATGGTT
260 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTA-GGTT
* * ** * * * *
41487 CCTAATATGGGAAGGAATGGAGATTGTTACGAGAATCGATTCTTGTATTATTTAAGGGATAAACT
324 CCTAATCTGGAAAATAATGGAGACTGTTACAAGAATCGATGCTTGTATTATTTAAGGGATGAACT
* * * * * *
41552 TTGATTTTATGGAAAGTAGGGCAAAGAAAAGA-TTTCAATTCGAAAGAAAATCATCAATATCATC
389 TTGACTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATT
* *
41616 TATTCTAATGAAGCA-AATGTGTTT
453 TATCCTATTGAAG-AGAATGTGTTT
41640 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGGCA
1 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGGCA
* * * * *
41705 CGAACTTAGATTTTACAAAAATTGGTGGGAAGAAACCCTTTCACATGAAACCAAAGCATCAATAT
66 CGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAACCTTTCTCATGAAACCAAAACATCAATAT
** * * * *
41770 CGTGTATCCTTATGAGAAAACTATGTTTATTGTGCCTCATCCTAAAAAGAATGGGGATTAGTATG
131 CACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATG
* * *
41835 ACTATTCATGTTTGTCTCATTTAAGAGAAAAACTTTCATTCTATCAAAAACGGTAGAAAGAAAA-
196 ACTATTCATGTTTGTCTCATTTAAGAGAAAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG
** * *
41899 CTTCCCTTGCGACTCCAAAGCCTCAATGTCATGTATCCTAATG-AAGGAAATGTGTTTTAGGTTC
261 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGG-AATGTGTTTTAGGTTC
* * * *** * * * *
41963 CCAATCCGGAAAATAATGGGGACTGTTTTGAGAATCTAAGCTAGTCTTATTTAAGGGATGAACTT
325 CTAATCTGGAAAATAATGGAGACTGTTACAAGAATCGATGCTTGTATTATTTAAGGGATGAACTT
*
42028 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
390 TGACTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
*
42093 TCCTACTGAAGAGAATGTGTTT
455 TCCTATTGAAGAGAATGTGTTT
* * ** *
42115 ATAGTGCTTAATCACAAAATGAATGAAGATCGTTACTAGAATCCTTGTTTGTCTCATTTGAGGCG
1 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGGCA
* ***
42180 CGAACTTAGACTTTACAAAATTTGGT-GGAAAAAATACCTTTCTTGCGAAACCAAAACATCAATA
66 CGAACTTAGACTTTACAAAAATTGGTGGGAAAAAA-ACCTTTCTCATGAAACCAAAACATCAATA
* * *
42244 TCACGTATCCTAAAGAGAAGACTATGTTTATGGTGTCTAATCCTAAAAAGAATGGGGATTGGTAT
130 TCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAT
* * ** * * *
42309 GAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTGTCAAAAATGGTAGCAAGAAAA
195 GACTATTCATGTTTGTCTCATTTAAGAGAAAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAA
* *
42374 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTTTAGGTTC
260 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTAGGTTC
* * * * *
42439 CTAATCCT-GAAAATAATGGAGACTGTTATAAGGATCGATGATTGTCTTATTTGTA-GGATGAAC
325 CTAAT-CTGGAAAATAATGGAGACTGTTACAAGAATCGATGCTTGTATTATTT-AAGGGATGAAC
* * * *
42502 TTTGACTTTAAGGAAAATAGGGCAAGGAAAAGATTTTCGTGCGAAATAAAATCATCAATAAT-AT
388 TTTGACTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT-ATCAT
42566 TTATCCTATTGAAGAGAATGTGTTT
452 TTATCCTATTGAAGAGAATGTGTTT
* * *
42591 GTAGTCCCTAATCATAAAATGAATGAAGATCATT
1 ATAGTGCCTAATCACAAAATGAATGAAGATCATT
42625 CCTTGTAAGC
Statistics
Matches: 1237, Mismatches: 193, Indels: 53
0.83 0.13 0.04
Matches are distributed among these distances:
471 54 0.04
472 44 0.04
473 225 0.18
474 93 0.08
475 591 0.48
476 223 0.18
477 7 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (476 bp):
ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGGCA
CGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAACCTTTCTCATGAAACCAAAACATCAATAT
CACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATG
ACTATTCATGTTTGTCTCATTTAAGAGAAAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG
CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTAGGTTCC
TAATCTGGAAAATAATGGAGACTGTTACAAGAATCGATGCTTGTATTATTTAAGGGATGAACTTT
GACTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTAT
CCTATTGAAGAGAATGTGTTT
Found at i:42414 original size:159 final size:156
Alignment explanation
Indices: 41276--42418 Score: 492
Period size: 158 Copynumber: 7.2 Consensus size: 156
41266 CCATTCTTAT
* * * * *
41276 GAAACCAAAGCAGCAATATCATGTATCGTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
1 GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGTCTAATCCTAAA
* * * * * * *
41341 AAGAATGGGCATTCGTATGACTATTCTTCTTTGTCTCATATAAGAGACAAACTTTGATTCTATCA
66 AAGAATGGGGATTGGTATGAGTATTCATGTTTGTCTCATTTAAGAGACGAACTTTGATT-T-TCA
* * * *
41406 AAAATTGG-GGAAAAAAACCTTTTCTTGT
129 AAAA-TGGTGCAAGAAAAGCTTTTCTTGC
* * * * * *
41434 GACACCAAAGCATTAATGTCATGTATCCTAATGA-AAGGAATGTGTTTATGGT-TCCTAAT-ATG
1 GAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GACTATGTTTATGGTGT-CTAATCCT-
** * * * * * * * * **
41496 GGAAGGAATGGAGATTGTTACGAG-AATCGAT-TCTTGTATTATTTAAGGGATAAACTTTGATTT
63 AAAAAGAATGGGGATTGGTATGAGTATTC-ATGT-TTGTCTCATTTAAGAGACGAACTTTGATTT
* *
41559 T-ATGGAAAGTAGG-GCAAAGAAAAG-ATTTCAATT-C
126 TCA---AAAAT-GGTGC-AAGAAAAGCTTTTC--TTGC
** * * * * * *
41593 GAAAGAAAATCATCAATATCATCTATTCTAATGAAGCAA-A-TGTGTTTATAGTGCCTAATCAC-
1 GAAACCAAAGCATCAATATCATGTATCCTAATG-AG-AAGACTATGTTTATGGTGTCTAATC-CT
* ** *** * * * * *
41655 AAAATGAATGAAGATCATTACT-AGAATCCACGTTTGTCTCATTTGAG-GCACGAACTTAGATTT
63 AAAAAGAATGGGGATTGGTA-TGAGTATTCATGTTTGTCTCATTTAAGAG-ACGAACTTTGATTT
* ** * *
41718 TACAAAAATTGGTGGGAAGAAACCCTTTCACAT--
126 T-CAAAAA-TGGT-GCAAGAAAAGCTTT-TCTTGC
* * * * * *
41751 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTATGTTTATTGTGCCTCATCCTAAA
1 GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGTCTAATCCTAAA
* * ** *
41816 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTCATTTAAGAGAAAAACTTTCATTCTATCA
66 AAGAATGGGGATTGGTATGAGTATTCATGTTTGTCTCATTTAAGAGACGAACTTTGATT-T-TCA
* * **
41881 AAAACGGTAGAAAGAAAA-CTTCCCTTGC
129 AAAATGGT-GCAAGAAAAGCTTTTCTTGC
** * * * *
41909 GACTCCAAAGCCTCAATGTCATGTATCCTAATGAAGGAA-A-TGTGTTT-TAGGT-TCCCAATCC
1 GAAACCAAAGCATCAATATCATGTATCCTAATG-A-GAAGACTATGTTTAT-GGTGT-CTAATCC
** * * * * * * * * * * *
41970 GGAAAATAATGGGGACTGTTTTGAG-AATCTAAGCTAGTCTTATTTAAGGGATGAACTTTGATTT
62 TAAAAAGAATGGGGATTGGTATGAGTATTC-ATGTTTGTCTCATTTAAGAGACGAACTTTGATTT
* * *
42034 TAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGC
126 TCA--AAAAT-GGTGC-AAGAAAAGCTTTTCTTGC
* ** * * * * * *
42068 AAAAGAAAATCATCAATATCATTTATCCTACTGA-AGAGAATGTGTTTATAGTG-CTTAATCAC-
1 GAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTATGGTGTC-TAATC-CT
* ** * * * * * * * *
42130 AAAATGAATGAAGATCGTTACT-AGAATCCTTGTTTGTCTCATTTGAG-GCGCGAACTTAGACTT
63 AAAAAGAATGGGGATTGGTA-TGAGTATTCATGTTTGTCTCATTTAAGAG-ACGAACTTTGA-TT
* * * * *
42193 TACAAAATTTGGTGGAA-AAAATACCTTTCTTGC
125 TTCAAAA-ATGGTGCAAGAAAA-GCTTTTCTTGC
* * *
42226 GAAACCAAAACATCAATATCACGTATCCTAAAGAGAAGACTATGTTTATGGTGTCTAATCCTAAA
1 GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGTCTAATCCTAAA
*
42291 AAGAATGGGGATTGGTATGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTGTCA
66 AAGAATGGGGATTGGTATGAGTATTCATGTTTGTCTCATTTAAGAGACGAACTTTGATT-T-TCA
42356 AAAATGGTAGCAAGAAAAGCTTTTCTTGC
129 AAAATGGT-GCAAGAAAAGCTTTTCTTGC
* * *
42385 GACACCAAAGCATCAATGTCATGTTTCCTAATGA
1 GAAACCAAAGCATCAATATCATGTATCCTAATGA
42419 AGGGAATGTG
Statistics
Matches: 710, Mismatches: 204, Indels: 141
0.67 0.19 0.13
Matches are distributed among these distances:
155 1 0.00
156 8 0.01
157 32 0.05
158 405 0.57
159 233 0.33
160 27 0.04
161 2 0.00
162 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (156 bp):
GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGTCTAATCCTAAA
AAGAATGGGGATTGGTATGAGTATTCATGTTTGTCTCATTTAAGAGACGAACTTTGATTTTCAAA
AATGGTGCAAGAAAAGCTTTTCTTGC
Found at i:42484 original size:159 final size:155
Alignment explanation
Indices: 40899--42603 Score: 523
Period size: 159 Copynumber: 10.8 Consensus size: 155
40889 ATTCAAGCTA
* * * *
40899 GTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTCTTT-TTGCGA
1 GTCTTATTTAAGAGACGAACTTTGATT-T-TCAAAAATGGT-GCAAGAAAAGCT-TTTCTTGCGA
* * * *
40963 TACCAAAGCATCAATGTCATGTATTCTAATGAA-AGGAATGTGTTTTAGGTTCCTAATCTTGAAA
62 AACCAAAGCATCAATATCATGTATCCTAATGAAGA-GAATGTGTTTTAGGTTCCTAATCCTGAAA
* * ** ** *
41027 ATAATGGAGATTGTGACAAGGGTCGATGCTT
126 ATAATGGAGACTGTTATGAGAATC-ATGTTT
** * * * * * * * *
41058 AACTTATTTATGGGATGAACTTTGA-CTTCAAGGAAAATAAGGTG-AAGAAAAGATTTTCATACA
1 GTCTTATTTAAGAGACGAACTTTGATTTTC-A--AAAAT--GGTGCAAGAAAAGCTTTTCTTGCG
** * * * ** * * *
41121 AAAGAAAATCATCAATA-CTATTTATCTTGTTGAGGAGAATGTGTTTATA-GTGCCTAATCAT-A
61 AAACCAAAGCATCAATATC-ATGTATCCTAATGAAGAGAATGTGTTT-TAGGTTCCTAATCCTGA
* *
41183 AAATGAA--AAGA-TCATTACT-AGAATCCATGTTT
124 AAAT-AATGGAGACT-GTTA-TGAGAAT-CATGTTT
* * * * * ** * * ** **
41215 ATCTCATTTGAG-GCATGAACTTGGACTTAACAAAAATTGGTG-AGAAAAAAACCATTCTTATGA
1 GTCTTATTTAAGAG-ACGAACTTTGA-TTTTCAAAAA-TGGTGCA-AGAAAAGCTTTTCTTGCGA
* * * * * *
41278 AACCAAAGCAGCAATATCATGTATCGTTATG-AGAAGACTATG-TTTATGGTGCCTAATCCTGAA
62 AACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTTA-GGTTCCTAATCCTGAA
* * * * * *
41341 AAGAATGG-GCATTCG-TATGACTATTCTTCTTT
125 AATAATGGAG-ACT-GTTATGA-GAATCATGTTT
* * * * * * * *
41373 GTCTCATATAAGAGACAAACTTTGATTCTATCAAAAATTGG-GGAAAAAAACCTTTTCTTGTGAC
1 GTCTTATTTAAGAGACGAACTTTGATT-T-TCAAAAA-TGGTGCAAGAAAAGCTTTTCTTGCGAA
* * * *
41437 ACCAAAGCATTAATGTCATGTATCCTAATGAA-AGGAATGTG-TTTATGGTTCCTAAT-ATGGGA
63 ACCAAAGCATCAATATCATGTATCCTAATGAAGA-GAATGTGTTTTA-GGTTCCTAATCCT-GAA
** * *
41499 AGGAATGGAGATTGTTACGAGAATCGAT-TCTT
125 AATAATGGAGACTGTTATGAGAATC-ATGT-TT
* * ** * *
41531 GTATTATTTAAGGGATAAACTTTGATTTT-ATGGAAAGTAGG-GCAAAGAAAAG-ATTTCAATT-
1 GTCTTATTTAAGAGACGAACTTTGATTTTCA---AAAAT-GGTGC-AAGAAAAGCTTTTC--TTG
** * * * *
41592 CGAAAGAAAATCATCAATATCATCTATTCTAATGAAGCA-AATGTGTTTATA-GTGCCTAATCAC
59 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTT-TAGGTTCCTAATC-C
* * *
41655 --AAAATGAATGAAGA-TCATTACT-AGAATCCACGTTT
121 TGAAAAT-AATGGAGACT-GTTA-TGAGAAT-CATGTTT
* * * * ** * *
41690 GTCTCATTTGAG-GCACGAACTTAGATTTTACAAAAATTGGTGGGAAGAAACCCTTTCACAT--G
1 GTCTTATTTAAGAG-ACGAACTTTGATTTT-CAAAAA-TGGT-GCAAGAAAAGCTTT-TCTTGCG
* * * * * * * *
41752 AAACCAAAGCATCAATATCGTGTATCCTTATG-AGAAAACTATG-TTTATTGTGCCTCATCCTAA
61 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAA-TGTGTTTTA-GGTTCCTAATCCTGA
* * * * *
41815 AAAGAATGGGGATTAG-TATGACTATTCATGTTT
124 AAATAATGGAGACT-GTTATGA-GAATCATGTTT
* ** * * * ** *
41848 GTCTCATTTAAGAGAAAAACTTTCATTCTATCAAAAACGGTAGAAAGAAAA-CTTCCCTTGCGAC
1 GTCTTATTTAAGAGACGAACTTTGATT-T-TCAAAAATGGT-GCAAGAAAAGCTTTTCTTGCGAA
* * * * *
41912 TCCAAAGCCTCAATGTCATGTATCCTAATGAAG-GAAATGTGTTTTAGGTTCCCAATCCGGAAAA
63 ACCAAAGCATCAATATCATGTATCCTAATGAAGAG-AATGTGTTTTAGGTTCCTAATCCTGAAAA
* * * * *
41976 TAATGGGGACTGTTTTGAGAATCTAAGCTA
127 TAATGGAGACTGTTATGAGAATC-ATGTTT
* * * * * *
42006 GTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGCAA
1 GTCTTATTTAAGAGACGAACTTTGATTTTCA--AAAAT-GGTGC-AAGAAAAGCTTTTCTTGCGA
** * * * * *
42070 AAGAAAATCATCAATATCATTTATCCTACTGAAGAGAATGTGTTTATA-GTGCTTAATCAC--AA
62 AACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTT-TAGGTTCCTAATC-CTGAA
* *
42132 AATGAATGAAGA-TCGTTACT-AGAATCCTTGTTT
125 AAT-AATGGAGACT-GTTA-TGAGAAT-CATGTTT
* * * * * * * * *
42165 GTCTCATTTGAG-GCGCGAACTTAGACTTTACAAAATTTGGTGGAA-AAAATACCTTTCTTGCGA
1 GTCTTATTTAAGAG-ACGAACTTTGA-TTTTCAAAA-ATGGTGCAAGAAAA-GCTTTTCTTGCGA
* * * * * *
42228 AACCAAAACATCAATATCACGTATCCTAAAG-AGAAGACTATG-TTTATGGTGT-CTAATCCTAA
62 AACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTTA-GGT-TCCTAATCCTGA
* * * * *
42290 AAAGAATGGGGATTGGTATGAGTATTCATGTTT
124 AAATAATGGAGACTGTTATGAG-AATCATGTTT
*
42323 GTCTTATTTAAGAGACGAACTTTGATTCTGTCAAAAATGGTAGCAAGAAAAGCTTTTCTTGCGAC
1 GTCTTATTTAAGAGACGAACTTTGATT-T-TCAAAAATGGT-GCAAGAAAAGCTTTTCTTGCGAA
* * *
42388 ACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTTTAGGTTCCTAATCCTGAAAAT
63 ACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTTAGGTTCCTAATCCTGAAAAT
* * *
42453 AATGGAGACTGTTATAAGGATCGATGATT
128 AATGGAGACTGTTATGAGAATC-ATGTTT
* * * * * *
42482 GTCTTATTTGTAG-GATGAACTTTGACTTTAAGGAAAATAGG-GCAAGGAAAAGATTTTCGTGCG
1 GTCTTATTT-AAGAGACGAACTTTGATTTTCA--AAAAT-GGTGCAA-GAAAAGCTTTTCTTGCG
** * * * *
42545 AAATAAAATCATCAATAAT-ATTTATCCTATTGAAGAGAATGTGTTTGTA-GTCCCTAATC
61 AAACCAAAGCATCAAT-ATCATGTATCCTAATGAAGAGAATGTGTTT-TAGGTTCCTAATC
42604 ATAAAATGAA
Statistics
Matches: 1125, Mismatches: 294, Indels: 254
0.67 0.18 0.15
Matches are distributed among these distances:
154 2 0.00
155 9 0.01
156 69 0.06
157 83 0.07
158 439 0.39
159 475 0.42
160 41 0.04
161 7 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (155 bp):
GTCTTATTTAAGAGACGAACTTTGATTTTCAAAAATGGTGCAAGAAAAGCTTTTCTTGCGAAACC
AAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTTAGGTTCCTAATCCTGAAAATAAT
GGAGACTGTTATGAGAATCATGTTT
Found at i:43495 original size:32 final size:32
Alignment explanation
Indices: 43452--43515 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
43442 ACAATTCACT
* *
43452 GTGTATCGATACCAAG-ATCATGTATCGATACA
1 GTGTATAGATACAAAGAAT-ATGTATCGATACA
43484 GTGTATAGATACAAAGCAATATGTATCGATAC
1 GTGTATAGATACAAAG-AATATGTATCGATAC
43516 TATCTAGGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 14 0.50
33 12 0.43
34 2 0.07
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.28
Consensus pattern (32 bp):
GTGTATAGATACAAAGAATATGTATCGATACA
Found at i:48807 original size:19 final size:19
Alignment explanation
Indices: 48762--48846 Score: 65
Period size: 19 Copynumber: 4.7 Consensus size: 19
48752 TTTCAACAAT
* *
48762 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACATA-AGT-G
48783 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
48802 TTGTATAGATAC--AA---
1 TTGTATCGATACATAAGTG
*
48816 -TGTATCGATACATAACTG
1 TTGTATCGATACATAAGTG
*
48834 TTGAATCGATACA
1 TTGTATCGATACA
48847 ATGTATCGCT
Statistics
Matches: 53, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
13 10 0.19
15 2 0.04
17 2 0.04
19 22 0.42
20 3 0.06
21 14 0.26
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:48825 original size:32 final size:32
Alignment explanation
Indices: 48784--48859 Score: 116
Period size: 32 Copynumber: 2.4 Consensus size: 32
48774 AAACAGTAAT
* *
48784 TGTATCGATACATAAGTGTTGTATAGATACAA
1 TGTATCGATACATAACTGTTGAATAGATACAA
*
48816 TGTATCGATACATAACTGTTGAATCGATACAA
1 TGTATCGATACATAACTGTTGAATAGATACAA
*
48848 TGTATCGCTACA
1 TGTATCGATACA
48860 AAGCTACTGC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (32 bp):
TGTATCGATACATAACTGTTGAATAGATACAA
Found at i:48916 original size:13 final size:13
Alignment explanation
Indices: 48898--48923 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
48888 CATTGCTCAA
48898 TGTATCGATACAT
1 TGTATCGATACAT
48911 TGTATCGATACAT
1 TGTATCGATACAT
48924 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:48935 original size:33 final size:33
Alignment explanation
Indices: 48878--48940 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
48868 GCCAAGGAAA
* *
48878 TGTATCGATACATTGCTCAATGTATCGATACAT
1 TGTATCGATACATGGATCAATGTATCGATACAT
**
48911 TGTATCGATACATGGATCTTTGTATCGATA
1 TGTATCGATACATGGATCAATGTATCGATA
48941 TATCTGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (33 bp):
TGTATCGATACATGGATCAATGTATCGATACAT
Found at i:49255 original size:124 final size:124
Alignment explanation
Indices: 49035--49288 Score: 463
Period size: 124 Copynumber: 2.0 Consensus size: 124
49025 TCTTCCTTTG
* *
49035 CCAAACGAGTTTTTTGCATCATAAGTGGTCAGGATTCATGTTAAATATCAATTGCCATATGTCAA
1 CCAAACGAGTTTTTTGCATCATAAGTGGTCAGGATTCACGTTAAATATCAATTGCCACATGTCAA
*
49100 AACCCATCTTGATCACTTTTGAAGATAAAGCATGGCATTGAATGCCAAAGCCACAAGGT
66 AACCCATCTTGATCACTTTTGAAGATAAAGCATGGCATTAAATGCCAAAGCCACAAGGT
*
49159 CCAAATGAGTTTTTTGCATCATAAGTGGTCAGGATTCACGTTAAATATCAATTGCCACATGTCAA
1 CCAAACGAGTTTTTTGCATCATAAGTGGTCAGGATTCACGTTAAATATCAATTGCCACATGTCAA
*
49224 AACCCATCTTGATCACTTTTGAAGATAAAGCATGGCATTAAATGCCAAAGCCACATGGT
66 AACCCATCTTGATCACTTTTGAAGATAAAGCATGGCATTAAATGCCAAAGCCACAAGGT
49283 CCAAAC
1 CCAAAC
49289 TCATTGGCTA
Statistics
Matches: 124, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
124 124 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (124 bp):
CCAAACGAGTTTTTTGCATCATAAGTGGTCAGGATTCACGTTAAATATCAATTGCCACATGTCAA
AACCCATCTTGATCACTTTTGAAGATAAAGCATGGCATTAAATGCCAAAGCCACAAGGT
Done.