genome.fa.s1156.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1156
Parameters: 2 7 7 80 10 50 1000
Length:  81754

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290--341	22	2.3	23	75	15	56	48	0	0	51	1.00
295--361	19	3.4	19	75	17	55	50	0	1	47	1.10
361--461	38	2.8	35	71	21	91	46	0	1	51	1.12
3787--3861	20	3.8	20	80	3	80	40	12	13	34	1.81
3784--3861	40	2.0	39	87	2	111	39	12	12	34	1.82
4390--6332	32	62.2	32	94	2	2831	16	17	34	30	1.93
7559--7595	13	2.8	13	92	8	58	0	2	5	91	0.48
22501--22575	20	3.8	20	80	3	80	40	12	13	34	1.81
22498--22575	40	2.0	39	87	2	111	39	12	12	34	1.82
24669--24722	16	3.4	16	85	7	67	53	0	0	46	1.00
24681--24728	16	3.1	16	90	3	71	52	0	0	47	1.00
28635--28665	3	10.3	3	100	0	62	32	0	35	32	1.58
29806--30337	265	2.0	265	94	0	931	32	20	21	25	1.98
33843--33881	21	1.9	20	94	5	69	38	2	30	28	1.70
34372--34432	21	2.9	21	97	0	113	37	3	29	29	1.73
35218--35252	13	2.7	13	86	0	52	31	8	20	40	1.82
37896--38063	66	2.5	67	79	9	175	21	23	11	43	1.85
38040--38090	25	2.0	25	92	0	84	21	33	13	31	1.92
39445--39488	19	2.4	19	84	3	54	27	2	6	63	1.31
39606--39668	6	10.7	6	75	13	51	25	4	3	66	1.26
39606--39668	11	5.3	12	71	17	51	25	4	3	66	1.26
41625--41695	22	3.0	22	81	15	88	30	21	12	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42990--43529	156	3.5	153	79	5	534	40	18	14	27	1.89
46038--46432	154	2.6	151	81	7	402	49	6	7	36	1.56
47614--47853	66	3.7	66	73	7	195	43	15	21	18	1.87
48493--48715	73	3.0	75	75	6	202	46	11	13	28	1.78
49419--49750	88	3.8	88	82	0	396	43	13	18	24	1.86
49556--49689	44	3.0	43	71	16	121	42	14	17	24	1.88
52975--53000	13	2.0	13	100	0	52	38	15	15	30	1.88
55597--56106	155	3.2	156	79	5	557	39	17	16	27	1.91
58620--58648	14	2.0	15	93	6	51	48	0	10	41	1.37
58526--58916	152	2.6	150	79	8	400	49	8	8	33	1.63
58638--58989	152	2.3	152	81	6	365	50	10	8	30	1.66
60259--60642	154	2.5	150	79	7	396	26	14	18	40	1.90
61664--61816	41	3.7	41	73	9	105	17	20	15	45	1.85
61746--61843	41	2.4	41	83	5	110	17	19	16	46	1.84
66394--66430	13	2.8	13	91	0	56	32	13	18	35	1.90
69816--69871	19	2.9	19	86	2	67	35	16	17	30	1.92
69837--69899	32	1.9	33	87	9	94	41	12	15	30	1.85
70424--70469	22	2.1	22	88	4	67	32	30	0	36	1.58
78033--78085	19	2.7	20	82	2	63	30	15	18	35	1.92
78130--78160	13	2.4	13	94	0	53	35	16	12	35	1.87
78114--78182	33	2.1	33	86	5	95	33	13	18	34	1.90

Tables:   1

The End!