Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1158
Parameters: 2 7 7 80 10 50 1000
Length:  40033

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
780--818
18
2.2
18
90
0
60
30
17
17
33
1.94
5564--5647
44
1.9
44
97
0
159
36
9
29
23
1.87
6191--6248
19
3.1
18
85
11
80
34
13
17
34
1.89
6192--6247
20
2.8
20
89
7
80
32
14
17
35
1.90
7315--7341
13
2.1
13
100
0
54
29
14
14
40
1.86
7295--7358
32
2.0
33
87
9
96
26
15
15
42
1.87
7400--7472
20
3.6
20
81
3
101
31
19
13
35
1.91
7379--7472
41
2.3
41
96
0
170
30
18
12
38
1.88
7379--7454
21
3.7
21
78
3
91
30
17
11
40
1.85
9915--9952
13
2.9
13
96
0
67
31
15
18
34
1.92
9941--10017
20
3.6
20
77
16
73
42
15
15
25
1.86
12023--12053
15
2.1
15
93
0
53
12
22
16
48
1.80
16095--16146
19
2.7
20
85
11
72
26
15
15
42
1.87
16187--16259
20
3.6
20
81
3
101
31
19
13
35
1.91
16166--16259
41
2.3
41
96
0
170
30
18
12
38
1.88
16166--16241
21
3.7
21
78
3
91
30
17
11
40
1.85
18425--18463
13
3.0
13
100
0
78
30
15
15
38
1.88
25044--25108
14
4.4
15
73
24
57
18
0
4
76
0.95
25049--25106
22
2.7
21
78
7
62
18
0
5
75
0.98
26892--26916
13
1.9
13
100
0
50
36
16
16
32
1.90
34346--34384
17
2.4
17
86
4
62
82
0
17
0
0.68
34362--34395
12
2.8
12
90
4
50
79
0
20
0
0.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37001--37220
99
2.2
100
88
1
327
35
12
24
28
1.91
39384--39500
53
2.3
51
85
4
155
45
11
14
28
1.80
40006--40033
13
2.2
13
100
0
56
57
7
7
28
1.52

Tables:   1

The End!