genome.fa.s1159.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1159
Parameters: 2 7 7 80 10 50 1000
Length:  94638

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4921--4993	21	3.5	21	84	0	92	35	9	17	36	1.83
6793--6886	19	5.6	19	72	27	104	34	12	19	34	1.89
6811--6867	13	3.9	13	76	24	60	35	14	17	33	1.90
6793--6894	32	3.2	32	100	0	204	33	12	19	34	1.90
12719--12773	18	3.1	18	73	17	53	76	20	1	1	0.97
12724--12791	12	5.9	11	75	10	64	79	16	1	2	0.93
13999--14325	64	5.0	67	77	14	299	21	30	12	35	1.91
13999--14378	34	11.6	34	76	11	280	21	30	12	34	1.91
14325--14378	27	2.0	27	92	0	90	24	35	12	27	1.92
14598--14666	21	3.2	21	64	18	52	24	26	18	30	1.98
14585--15088	43	10.9	43	77	14	477	23	25	19	31	1.98
14525--15088	91	6.0	91	90	4	804	23	25	18	31	1.98
14429--15088	182	3.5	182	89	4	906	24	25	18	31	1.98
14914--15245	101	3.2	100	81	5	261	25	25	16	32	1.96
15864--15924	19	3.5	19	70	25	71	32	8	19	39	1.81
15864--15933	32	2.2	32	100	0	140	32	10	18	38	1.84
23419--23472	20	2.7	20	85	5	74	33	9	14	42	1.78
26879--26921	22	2.0	22	95	0	77	48	23	4	23	1.69
27556--27585	13	2.4	12	94	5	51	46	0	0	53	1.00
29320--29358	19	2.1	19	85	9	53	56	0	2	41	1.13
29849--29888	2	20.0	2	100	0	80	50	0	0	50	1.00
32737--32789	27	2.0	27	84	0	70	52	1	0	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34069--34130	8	7.2	8	77	16	54	80	1	17	0	0.79
34072--34130	21	2.7	21	80	16	75	81	1	16	0	0.78
34390--34446	23	2.6	22	81	10	64	24	3	7	64	1.34
34907--34958	14	3.4	14	71	19	50	42	1	0	55	1.10
35061--35138	13	5.6	14	73	17	65	39	1	0	58	1.06
35061--35135	27	2.7	27	73	20	66	40	1	0	58	1.06
35546--35611	29	2.2	30	81	7	73	36	0	4	59	1.18
43182--43296	32	3.7	32	77	2	117	39	5	5	50	1.47
43957--43988	13	2.6	12	95	5	55	90	0	6	3	0.53
44604--44638	18	1.9	18	94	0	61	48	14	0	37	1.44
44821--44845	2	12.5	2	100	0	50	48	0	0	52	1.00
46152--46207	17	3.2	18	74	18	55	67	1	1	28	1.10
46735--46762	10	2.8	10	100	0	56	32	0	14	53	1.41
47341--47542	67	3.0	68	93	2	336	41	5	12	40	1.67
51722--51775	21	2.6	21	90	0	81	51	12	9	25	1.70
55618--55652	18	1.9	18	88	0	52	37	5	2	54	1.39
56436--56472	17	2.4	16	86	13	51	2	24	0	72	0.97
57670--57757	44	2.0	44	97	0	167	20	14	22	42	1.89
59817--59936	53	2.3	52	79	1	123	32	9	15	42	1.79
66742--66871	59	2.2	59	81	0	161	23	15	23	36	1.93
66824--67097	59	4.7	59	83	0	316	20	16	25	36	1.94
66742--67077	118	2.8	118	84	0	413	22	15	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69470--69495	13	2.0	13	100	0	52	38	15	15	30	1.88
69448--69515	33	2.1	32	88	2	100	33	14	16	35	1.89
71904--71944	22	2.0	21	86	13	59	41	4	21	31	1.74
72072--72104	13	2.5	13	95	0	57	39	15	18	27	1.90
78284--78309	13	2.0	13	100	0	52	38	15	15	30	1.88
78262--78329	33	2.1	32	88	2	100	33	14	16	35	1.89
81839--81869	13	2.4	13	100	0	62	16	16	12	54	1.71
87689--87726	14	2.7	14	91	0	58	81	0	2	15	0.80
88333--88377	14	3.3	13	84	9	54	77	4	0	17	0.92

Tables:   1

The End!