Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold116
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1263769
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Warning! 4928 characters in sequence are not A, C, G, or T
File 5 of 5
Found at i:1184281 original size:31 final size:28
Alignment explanation
Indices: 1184204--1184285 Score: 87
Period size: 27 Copynumber: 2.9 Consensus size: 28
1184194 TTAATTTTTT
* *
1184204 TAAATTTATTTGAATTT-AAATATTATG
1 TAAATTTTTTTGAATTTAAAATATTAGG
* *
1184231 TAAATTATTTTAAATTTAAAATTATTAGG
1 TAAATTTTTTTGAATTTAAAA-TATTAGG
1184260 TTATAATTTTTTTGAATTT-AAATATT
1 -TA-AATTTTTTTGAATTTAAAATATT
1184286 TTAAGATTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
27 14 0.31
28 3 0.07
29 10 0.22
30 5 0.11
31 13 0.29
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (28 bp):
TAAATTTTTTTGAATTTAAAATATTAGG
Found at i:1190018 original size:19 final size:20
Alignment explanation
Indices: 1189975--1190027 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
1189965 ATTTCAACGA
*
1189975 TTTGCATCGATACATAAAGT
1 TTTGTATCGATACATAAAGT
*
1189995 ATTGTATCGATACAT-AAGT
1 TTTGTATCGATACATAAAGT
1190014 TTTGTATCGATACA
1 TTTGTATCGATACA
1190028 ATTTAAGCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (20 bp):
TTTGTATCGATACATAAAGT
Found at i:1190088 original size:13 final size:13
Alignment explanation
Indices: 1190070--1190094 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1190060 ATTACTCTAG
1190070 TGTATCGATACAT
1 TGTATCGATACAT
1190083 TGTATCGATACA
1 TGTATCGATACA
1190095 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1190092 original size:34 final size:33
Alignment explanation
Indices: 1190049--1190115 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 33
1190039 TGCCAAAAAA
*
1190049 TGTATCGATACA-TTACTCTAGTGTATCGATACAT
1 TGTATCGATACACTGA-TCT-GTGTATCGATACAT
*
1190083 TGTATCGATACACTGATCTTTGTATCGATACAT
1 TGTATCGATACACTGATCTGTGTATCGATACAT
1190116 GCAGGCAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
33 13 0.43
34 15 0.50
35 2 0.07
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (33 bp):
TGTATCGATACACTGATCTGTGTATCGATACAT
Found at i:1190141 original size:24 final size:24
Alignment explanation
Indices: 1190114--1190163 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
1190104 GTATCGATAC
1190114 ATGCAGGCAAATTTGCCCAGATGT
1 ATGCAGGCAAATTTGCCCAGATGT
*
1190138 ATGCAGGCAAATTTGCGCAGATGT
1 ATGCAGGCAAATTTGCCCAGATGT
1190162 AT
1 AT
1190164 CGATACACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (24 bp):
ATGCAGGCAAATTTGCCCAGATGT
Found at i:1194570 original size:2 final size:2
Alignment explanation
Indices: 1194563--1194592 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
1194553 GTTTCTATCA
*
1194563 AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1194593 GAAGCATTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1201104 original size:2 final size:2
Alignment explanation
Indices: 1201099--1201130 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
1201089 CTTTTTTCTC
1201099 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1201131 TAAGGTCCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1211855 original size:2 final size:2
Alignment explanation
Indices: 1211809--1211843 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
1211799 GGTGCATACT
1211809 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1211844 TACAAGATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1211936 original size:3 final size:3
Alignment explanation
Indices: 1211928--1211956 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
1211918 AAGAAAAACT
1211928 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1211957 CAATTTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:1212349 original size:2 final size:2
Alignment explanation
Indices: 1212297--1212337 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
1212287 AATGCATACT
*
1212297 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1212338 TACAGGATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:1212438 original size:3 final size:3
Alignment explanation
Indices: 1212430--1212461 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
1212420 CTTAATTTTA
1212430 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1212462 ATTCAATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:1216962 original size:2 final size:2
Alignment explanation
Indices: 1216949--1216978 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
1216939 TTATGTTAAA
*
1216949 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1216979 GAAAAAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1219569 original size:3 final size:3
Alignment explanation
Indices: 1219561--1219596 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
1219551 TCTTTGTATC
1219561 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1219597 TTATAATTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:1220797 original size:25 final size:25
Alignment explanation
Indices: 1220769--1220860 Score: 77
Period size: 25 Copynumber: 3.8 Consensus size: 25
1220759 CTTGACCTAT
1220769 TTTATAATTATATAATATATATTAA
1 TTTATAATTATATAATATATATTAA
* *
1220794 TTTATATTTTTAT-ATAT-TATATAA
1 TTTATAATTATATAATATATAT-TAA
* *
1220818 TTT-TTATTATATAAAATATA-TATA
1 TTTATAATTATATAATATATATTA-A
*
1220842 TATATAA-TATTATAATATA
1 TTTATAATTA-TATAATATA
1220861 AACATTATAA
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
23 11 0.21
24 18 0.35
25 23 0.44
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TTTATAATTATATAATATATATTAA
Found at i:1220840 original size:30 final size:30
Alignment explanation
Indices: 1220804--1220875 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
1220794 TTTATATTTT
* *
1220804 TATATATTATATAATTTTTATTATATAAA-A
1 TATATATTATATAA-TATTATAATATAAACA
1220834 TATATATATATATAATATTATAATATAAACA
1 TATATAT-TATATAATATTATAATATAAACA
*
1220865 T-TATAATATAT
1 TATATATTATAT
1220876 GTTAAGTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 5 0.14
30 23 0.62
31 9 0.24
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (30 bp):
TATATATTATATAATATTATAATATAAACA
Found at i:1220841 original size:27 final size:27
Alignment explanation
Indices: 1220768--1220843 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 27
1220758 ACTTGACCTA
* *
1220768 TTTTATAATTATATAATATATAT-TAAT
1 TTTTATTA-TATAAAATATATATATAAT
* * *
1220795 TTATATT-T-TTATATAT-TATATAAT
1 TTTTATTATATAAAATATATATATAAT
1220819 TTTTATTATATAAAATATATATATA
1 TTTTATTATATAAAATATATATATA
1220844 TATAATATTA
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
23 3 0.08
24 15 0.41
25 2 0.05
26 6 0.16
27 11 0.30
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (27 bp):
TTTTATTATATAAAATATATATATAAT
Found at i:1220867 original size:14 final size:13
Alignment explanation
Indices: 1220821--1220874 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 13
1220811 TATATAATTT
*
1220821 TTATTATATAAAA
1 TTATAATATAAAA
1220834 TATATATATATATAATA
1 T-TATA-ATATA-AA-A
1220851 TTATAATATAAACA
1 TTATAATATAAA-A
1220865 TTATAATATA
1 TTATAATATA
1220875 TGTTAAGTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
13 1 0.03
14 16 0.46
15 10 0.29
16 6 0.17
17 2 0.06
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (13 bp):
TTATAATATAAAA
Found at i:1220909 original size:18 final size:18
Alignment explanation
Indices: 1220886--1220921 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1220876 GTTAAGTTAT
*
1220886 TTAAATTTTAAAATTTAA
1 TTAAATATTAAAATTTAA
*
1220904 TTAAATATTAAATTTTAA
1 TTAAATATTAAAATTTAA
1220922 AAAATATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTAAATATTAAAATTTAA
Found at i:1225883 original size:2 final size:2
Alignment explanation
Indices: 1225878--1225914 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
1225868 TTTTTATGCC
1225878 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1225915 CACACATATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1228230 original size:2 final size:2
Alignment explanation
Indices: 1228223--1228253 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
1228213 GGGACGTTTA
*
1228223 AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1228254 AAGATTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:1228267 original size:20 final size:20
Alignment explanation
Indices: 1228223--1228268 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
1228213 GGGACGTTTA
*
1228223 ATATATATATAAATATATAT
1 ATATATATATAAAGATATAT
*
1228243 ATATATATATAAAGATTTAT
1 ATATATATATAAAGATATAT
*
1228263 TTATAT
1 ATATAT
1228269 TGACATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
ATATATATATAAAGATATAT
Found at i:1233365 original size:2 final size:2
Alignment explanation
Indices: 1233358--1233390 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1233348 TTAACATTGG
1233358 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1233391 ATTCACCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1238702 original size:14 final size:14
Alignment explanation
Indices: 1238683--1238715 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
1238673 ATTACTTTTC
1238683 TTAAGGTTTAAAGT
1 TTAAGGTTTAAAGT
*
1238697 TTAAGGTTTGAAGT
1 TTAAGGTTTAAAGT
1238711 TTAAG
1 TTAAG
1238716 ATGAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.42
Consensus pattern (14 bp):
TTAAGGTTTAAAGT
Found at i:1238882 original size:14 final size:14
Alignment explanation
Indices: 1238863--1238964 Score: 73
Period size: 14 Copynumber: 7.3 Consensus size: 14
1238853 AAGCTTAAGG
1238863 GTTTAAGGTTTAAA
1 GTTTAAGGTTTAAA
** *
1238877 GTTTAAAGGGATAGA
1 GTTT-AAGGTTTAAA
* *
1238892 CTTAAAGG-TTAAA
1 GTTTAAGGTTTAAA
**
1238905 GTTTGGGGTTTAAA
1 GTTTAAGGTTTAAA
*
1238919 -TATTAAGGTTTAAG
1 GT-TTAAGGTTTAAA
* *
1238933 GGTTAAGGTTTAAG
1 GTTTAAGGTTTAAA
*
1238947 GATTAAGGTTTAAA
1 GTTTAAGGTTTAAA
1238961 GTTT
1 GTTT
1238965 GGGGTTTGGG
Statistics
Matches: 66, Mismatches: 18, Indels: 8
0.72 0.20 0.09
Matches are distributed among these distances:
13 8 0.12
14 49 0.74
15 9 0.14
ACGTcount: A:0.34, C:0.01, G:0.26, T:0.38
Consensus pattern (14 bp):
GTTTAAGGTTTAAA
Found at i:1238931 original size:7 final size:7
Alignment explanation
Indices: 1238921--1238964 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
1238911 GGTTTAAATA
1238921 TTAAGGT
1 TTAAGGT
*
1238928 TTAAGGG
1 TTAAGGT
1238935 TTAAGGT
1 TTAAGGT
*
1238942 TTAAGGA
1 TTAAGGT
1238949 TTAAGGT
1 TTAAGGT
*
1238956 TTAAAGT
1 TTAAGGT
1238963 TT
1 TT
1238965 GGGGTTTGGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.32, C:0.00, G:0.27, T:0.41
Consensus pattern (7 bp):
TTAAGGT
Found at i:1238964 original size:21 final size:21
Alignment explanation
Indices: 1238911--1238964 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
1238901 TAAAGTTTGG
*
1238911 GGTTTAAA-TATTAAGGTTTAA
1 GGTTTAAAGT-TTAAGGATTAA
* *
1238932 GGGTTAAGGTTTAAGGATTAA
1 GGTTTAAAGTTTAAGGATTAA
1238953 GGTTTAAAGTTT
1 GGTTTAAAGTTT
1238965 GGGGTTTGGG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (21 bp):
GGTTTAAAGTTTAAGGATTAA
Found at i:1238971 original size:7 final size:7
Alignment explanation
Indices: 1238961--1239386 Score: 303
Period size: 7 Copynumber: 62.4 Consensus size: 7
1238951 AAGGTTTAAA
1238961 GTTTGGG
1 GTTTGGG
1238968 GTTTGGG
1 GTTTGGG
*
1238975 GTTTAGG
1 GTTTGGG
*
1238982 GTTAGGG
1 GTTTGGG
* *
1238989 TTTTAAGG
1 GTTT-GGG
*
1238997 TTTTAGGG
1 GTTT-GGG
*
1239005 G-TTAGG
1 GTTTGGG
1239011 GTTTGGG
1 GTTTGGG
1239018 GTTTGGGG
1 GTTT-GGG
*
1239026 GTTAGGG
1 GTTTGGG
*
1239033 GTTAGGG
1 GTTTGGG
1239040 GTTTAGGG
1 GTTT-GGG
1239048 G-TTGGAG
1 GTTTGG-G
*
1239055 GTTAGGG
1 GTTTGGG
*
1239062 GTTGGGG
1 GTTTGGG
1239069 GTTTGGG
1 GTTTGGG
1239076 GTTT-GG
1 GTTTGGG
1239082 GTTTGGG
1 GTTTGGG
*
1239089 GTTTGAG
1 GTTTGGG
*
1239096 GTTTGAG
1 GTTTGGG
1239103 GTTTGGG
1 GTTTGGG
1239110 GTTTGGG
1 GTTTGGG
*
1239117 GTTTAGG
1 GTTTGGG
***
1239124 GTTTATA
1 GTTTGGG
*
1239131 GTTTGAG
1 GTTTGGG
*
1239138 GTTTGAG
1 GTTTGGG
1239145 GTTT-GG
1 GTTTGGG
1239151 GTTT-GG
1 GTTTGGG
*
1239157 GTTAGGG
1 GTTTGGG
*
1239164 GTTAGGG
1 GTTTGGG
1239171 G-TTGGG
1 GTTTGGG
1239177 GTTT-GG
1 GTTTGGG
* *
1239183 ATTTAGG
1 GTTTGGG
1239190 GTTTAGGG
1 GTTT-GGG
*
1239198 G-TTAGG
1 GTTTGGG
*
1239204 GTTTAGG
1 GTTTGGG
**
1239211 GTTTATG
1 GTTTGGG
*
1239218 GTTTAGG
1 GTTTGGG
*
1239225 ATTTGGG
1 GTTTGGG
1239232 GTTTGGG
1 GTTTGGG
1239239 GTTT-GG
1 GTTTGGG
*
1239245 G-TTAGG
1 GTTTGGG
1239251 G-TTGGG
1 GTTTGGG
1239257 GTTT-GG
1 GTTTGGG
1239263 GTTT-GG
1 GTTTGGG
1239269 GTTTGTGG
1 GTTTG-GG
1239277 G-TT-GG
1 GTTTGGG
1239282 G-TT-GG
1 GTTTGGG
1239287 GTTTGGG
1 GTTTGGG
*
1239294 GCTTGGG
1 GTTTGGG
*
1239301 GCTTGGG
1 GTTTGGG
*
1239308 GCTT-GG
1 GTTTGGG
*
1239314 GCTTGGG
1 GTTTGGG
*
1239321 GCTTGGG
1 GTTTGGG
*
1239328 GCTTGGG
1 GTTTGGG
1239335 GTTTGGG
1 GTTTGGG
*
1239342 GCTTGGG
1 GTTTGGG
1239349 GTTTGGG
1 GTTTGGG
*
1239356 GCTTGGG
1 GTTTGGG
*
1239363 GTTTAGG
1 GTTTGGG
*
1239370 GTTTAGG
1 GTTTGGG
*
1239377 GTTTAGG
1 GTTTGGG
1239384 GTT
1 GTT
1239387 GTCGCGACGT
Statistics
Matches: 357, Mismatches: 43, Indels: 38
0.82 0.10 0.09
Matches are distributed among these distances:
5 10 0.03
6 65 0.18
7 254 0.71
8 28 0.08
ACGTcount: A:0.08, C:0.02, G:0.51, T:0.40
Consensus pattern (7 bp):
GTTTGGG
Found at i:1241712 original size:22 final size:22
Alignment explanation
Indices: 1241678--1241734 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
1241668 CTGGATATGT
*
1241678 TAAAAAAA-ACATGAAACATAA
1 TAAAAAAATGCATGAAACATAA
1241699 TAAAAAAATGCATGAAACATAA
1 TAAAAAAATGCATGAAACATAA
1241721 TAAAAAAATGCATG
1 TAAAAAAATGCATG
1241735 GTCAAAGGCT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 8 0.24
22 26 0.76
ACGTcount: A:0.65, C:0.09, G:0.09, T:0.18
Consensus pattern (22 bp):
TAAAAAAATGCATGAAACATAA
Found at i:1242691 original size:20 final size:20
Alignment explanation
Indices: 1242644--1242718 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
1242634 AAAAAGACAT
*
1242644 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
1242663 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
1242684 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
1242704 AATGTATCGATACAT
1 AATGTATCGATACAT
1242719 CAAGGTAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:1242712 original size:40 final size:39
Alignment explanation
Indices: 1242641--1242718 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
1242631 GGTAAAAAGA
* *
1242641 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
1242680 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
1242719 CAAGGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:1242937 original size:15 final size:14
Alignment explanation
Indices: 1242917--1242957 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
1242907 GGTGTCTACA
1242917 AGGGTTTAGGGTTTT
1 AGGGTTTAGGG-TTT
*
1242932 AGGGTTTAAGGTTT
1 AGGGTTTAGGGTTT
1242946 AGGGGTTTAGGG
1 A-GGGTTTAGGG
1242958 GTTCGGGGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.17, C:0.00, G:0.44, T:0.39
Consensus pattern (14 bp):
AGGGTTTAGGGTTT
Found at i:1242958 original size:8 final size:8
Alignment explanation
Indices: 1242918--1242997 Score: 55
Period size: 7 Copynumber: 10.8 Consensus size: 8
1242908 GTGTCTACAA
1242918 GGGTTTAG
1 GGGTTTAG
*
1242926 GGTTTTA-
1 GGGTTTAG
1242933 GGGTTTA-
1 GGGTTTAG
*
1242940 AGGTTTAG
1 GGGTTTAG
1242948 GGGTTTAG
1 GGGTTTAG
*
1242956 GGG-TTCG
1 GGGTTTAG
*
1242963 GGGTTCA-
1 GGGTTTAG
*
1242970 GGG-TTCG
1 GGGTTTAG
1242977 GGG-TTAG
1 GGGTTTAG
* *
1242984 GGGGTTCG
1 GGGTTTAG
1242992 GGGTTT
1 GGGTTT
1242998 CCGGGTTCGG
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
6 1 0.02
7 30 0.54
8 25 0.45
ACGTcount: A:0.10, C:0.05, G:0.49, T:0.36
Consensus pattern (8 bp):
GGGTTTAG
Found at i:1243011 original size:8 final size:7
Alignment explanation
Indices: 1242955--1243198 Score: 122
Period size: 7 Copynumber: 34.9 Consensus size: 7
1242945 TAGGGGTTTA
1242955 GGGGTTC
1 GGGGTTC
1242962 GGGGTTC
1 GGGGTTC
*
1242969 AGGGTTC
1 GGGGTTC
*
1242976 GGGGTTAG
1 GGGGTT-C
1242984 GGGGTTC
1 GGGGTTC
1242991 GGGGTTTC
1 GGGG-TTC
*
1242999 CGGGTTC
1 GGGGTTC
*
1243006 GGGGGTC
1 GGGGTTC
* *
1243013 GGGTTTA
1 GGGGTTC
*
1243020 GGGGTGC
1 GGGGTTC
1243027 GGGGTTC
1 GGGGTTC
*
1243034 GGGGTTA
1 GGGGTTC
1243041 GGGGTTC
1 GGGGTTC
* *
1243048 GGGTTTTA
1 GGG-GTTC
* * *
1243056 AGTGTTA
1 GGGGTTC
* *
1243063 GGGTTTTAA
1 GGG-GTT-C
* *
1243072 GGGTTTT
1 GGGGTTC
*
1243079 AGGGTGT-
1 GGGGT-TC
* *
1243086 AGGGTTT
1 GGGGTTC
*
1243093 GGGGTTT
1 GGGGTTC
1243100 GGGGTT-
1 GGGGTTC
** *
1243106 TAGGTTT
1 GGGGTTC
* *
1243113 AGGGTTT
1 GGGGTTC
*
1243120 TGGGTT-
1 GGGGTTC
1243126 GGGGTTC
1 GGGGTTC
1243133 -GGGTTC
1 GGGGTTC
1243139 GGGG-TC
1 GGGGTTC
1243145 GGGGTTC
1 GGGGTTC
*
1243152 GGGTTTC
1 GGGGTTC
1243159 GGGGTTC
1 GGGGTTC
1243166 GGGGTTC
1 GGGGTTC
1243173 GGGGTTC
1 GGGGTTC
*
1243180 -GGGTGC
1 GGGGTTC
*
1243186 GGGGTGC
1 GGGGTTC
1243193 GGGGTT
1 GGGGTT
1243199 TTAGGGTTTC
Statistics
Matches: 187, Mismatches: 38, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
6 27 0.14
7 135 0.72
8 21 0.11
9 4 0.02
ACGTcount: A:0.05, C:0.09, G:0.53, T:0.33
Consensus pattern (7 bp):
GGGGTTC
Found at i:1243117 original size:20 final size:20
Alignment explanation
Indices: 1243088--1243125 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1243078 TAGGGTGTAG
*
1243088 GGTTTGGGGTTTGGGGTTTA
1 GGTTTAGGGTTTGGGGTTTA
*
1243108 GGTTTAGGGTTTTGGGTT
1 GGTTTAGGGTTTGGGGTT
1243126 GGGGTTCGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.05, C:0.00, G:0.47, T:0.47
Consensus pattern (20 bp):
GGTTTAGGGTTTGGGGTTTA
Found at i:1243203 original size:139 final size:137
Alignment explanation
Indices: 1242917--1243282 Score: 367
Period size: 139 Copynumber: 2.6 Consensus size: 137
1242907 GGTGTCTACA
* ** * **
1242917 AGGGTTTAGGGTTTTAGGGTTTAAGGTTTAGGGGTTTAGGGGTTCGGGGTTCAGGGTTCGGGGTT
1 AGGGTTTAGGGTTTTAGGGTTTAGGGTTT-GGGGTTT-GGGGTT-TAGGTTTAGGGTTTTGGGTT
* * *
1242982 AGGGGGTTCGGGGTTTCCGGGTTCGGGGGTCGGGTTTAGGGGTGCGGGGTTCGGGGTTAGGGGTT
63 --GGGGTTC-GGG-TT-CGGGGTCGGGGGTCGGGTTTAGGGGTGCGGGGTTCGGGGTTACGGGTG
***
1243047 CGGGTTTTAAGTGTT
123 CGGGTGCGAAGTGTT
*
1243062 AGGGTTTTAAGGGTTTTAGGGTGTAGGGTTTGGGGTTTGGGGTTTAGGTTTAGGGTTTTGGGTTG
1 AGGG-TTT-AGGGTTTTAGGGTTTAGGGTTTGGGGTTTGGGGTTTAGGTTTAGGGTTTTGGGTTG
* * *
1243127 GGGTTCGGGTTCGGGGTCGGGGTTCGGGTTTCGGGGTTCGGGGTTCGGGGTT-CGGGTGCGGGGT
64 GGGTTCGGGTTCGGGGTCGGGGGTCGGGTTTAGGGGTGCGGGGTTCGGGGTTACGGGTGC-GGGT
** *
1243191 GCGGGGTTTT
128 GCGAAGTGTT
* * *
1243201 AGGGTTTCGGGTTTTAGGGGTTTGAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGG-TTTGGGTT
1 AGGGTTTAGGGTTTTA-GGGTTT-AGGGTTTGGGGTTTGGGGTTTA-GGTTTAGGGTTTTGGGTT
* * *
1243265 TGGGTTGGGGTTTGGGGT
63 GGGGTTCGGGTTCGGGGT
1243283 TTTTGGGGTT
Statistics
Matches: 189, Mismatches: 26, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
137 8 0.04
138 13 0.07
139 92 0.49
140 11 0.06
141 3 0.02
142 7 0.04
144 15 0.08
145 10 0.05
146 10 0.05
147 20 0.11
ACGTcount: A:0.07, C:0.06, G:0.50, T:0.36
Consensus pattern (137 bp):
AGGGTTTAGGGTTTTAGGGTTTAGGGTTTGGGGTTTGGGGTTTAGGTTTAGGGTTTTGGGTTGGG
GTTCGGGTTCGGGGTCGGGGGTCGGGTTTAGGGGTGCGGGGTTCGGGGTTACGGGTGCGGGTGCG
AAGTGTT
Found at i:1243212 original size:7 final size:7
Alignment explanation
Indices: 1243198--1244151 Score: 300
Period size: 7 Copynumber: 134.4 Consensus size: 7
1243188 GGTGCGGGGT
1243198 TTTAGGG
1 TTTAGGG
*
1243205 TTTCGGG
1 TTTAGGG
1243212 TTTTAGGGG
1 -TTTA-GGG
1243221 TTTGAGGG
1 TTT-AGGG
1243229 TTTAGGG
1 TTTAGGG
1243236 TTTAGGG
1 TTTAGGG
1243243 TTTAGGG
1 TTTAGGG
1243250 TTTAGGG
1 TTTAGGG
1243257 TTT-GGG
1 TTTAGGG
1243263 TTT-GGG
1 TTTAGGG
*
1243269 -TTGGGG
1 TTTAGGG
*
1243275 TTTGGGG
1 TTTAGGG
*
1243282 TTTTTGGGG
1 --TTTAGGG
*
1243291 TTT--GT
1 TTTAGGG
*
1243296 TTTGGGG
1 TTTAGGG
*
1243303 TTTGGGG
1 TTTAGGG
1243310 TTT-GGG
1 TTTAGGG
*
1243316 TTTTGGG
1 TTTAGGG
*
1243323 --TGGGG
1 TTTAGGG
*
1243328 TGTTGGGGGG
1 T-TT--AGGG
*
1243338 TTTTGGGG
1 -TTTAGGG
*
1243346 TGTTGGGG
1 T-TTAGGG
***
1243354 TGGGGGG
1 TTTAGGG
*
1243361 TTTGGGG
1 TTTAGGG
1243368 TTT-GGG
1 TTTAGGG
1243374 TTT-GGG
1 TTTAGGG
* *
1243380 TGTGGGG
1 TTTAGGG
* *
1243387 TGTGGGG
1 TTTAGGG
***
1243394 TTTTTTG
1 TTTAGGG
**
1243401 TTGGGGGG
1 TT-TAGGG
*
1243409 TTTTGGGG
1 -TTTAGGG
1243417 TTT-GGG
1 TTTAGGG
1243423 TTTTTAGGG
1 --TTTAGGG
*
1243432 TTTGGGGG
1 TTT-AGGG
*
1243440 TTTTGGGG
1 -TTTAGGG
*
1243448 TTTGGGG
1 TTTAGGG
1243455 TTT-GGG
1 TTTAGGG
*
1243461 TTTGGGG
1 TTTAGGG
*
1243468 TTTGGGG
1 TTTAGGG
*
1243475 TGT-GGG
1 TTTAGGG
*
1243481 TTTTGGGG
1 -TTTAGGG
1243489 TTT-GGG
1 TTTAGGG
*
1243495 TTTGGGG
1 TTTAGGG
**
1243502 TTGGGGG
1 TTTAGGG
*
1243509 TTTGGGG
1 TTTAGGG
1243516 TTT-GGG
1 TTTAGGG
*
1243522 TTTGGGG
1 TTTAGGG
*
1243529 TTTGGGG
1 TTTAGGG
*
1243536 TTTGGGG
1 TTTAGGG
*
1243543 TTTGGGG
1 TTTAGGG
*
1243550 TTTGGGG
1 TTTAGGG
*
1243557 TTTGTGGG
1 TTT-AGGG
*
1243565 TTTGGGG
1 TTTAGGG
*
1243572 TTTTTGGG
1 -TTTAGGG
*
1243580 TTTGGGG
1 TTTAGGG
*
1243587 TTTTGGGG
1 -TTTAGGG
1243595 TTT-GGG
1 TTTAGGG
1243601 TTT-GGG
1 TTTAGGG
*
1243607 -TTGGGG
1 TTTAGGG
*
1243613 TTTGGGG
1 TTTAGGG
1243620 TTT-GGG
1 TTTAGGG
* *
1243626 GTTGGGG
1 TTTAGGG
*
1243633 TTTGGGG
1 TTTAGGG
1243640 TTT-GGG
1 TTTAGGG
*
1243646 TTTGGGG
1 TTTAGGG
*
1243653 TTTTTGAGGT
1 --TTT-AGGG
*
1243663 TTTCGGG
1 TTTAGGG
*
1243670 TTTCGGG
1 TTTAGGG
*
1243677 TTTTCGGG
1 -TTTAGGG
*
1243685 TTTGGGG
1 TTTAGGG
*
1243692 TTTCGGG
1 TTTAGGG
*
1243699 TTTCGAGG
1 TTTAG-GG
*
1243707 TTTATGG
1 TTTAGGG
*
1243714 TTTCGGG
1 TTTAGGG
1243721 TTTTA-GG
1 -TTTAGGG
1243728 -TTAGGG
1 TTTAGGG
1243734 TTTTAGGG
1 -TTTAGGG
1243742 TTTAGGG
1 TTTAGGG
*
1243749 TTTCGGG
1 TTTAGGG
1243756 TTTAGGG
1 TTTAGGG
1243763 TTTAGGG
1 TTTAGGG
1243770 TTTAGGG
1 TTTAGGG
1243777 -TTAGGG
1 TTTAGGG
1243783 TTTAGGG
1 TTTAGGG
1243790 TTTAGGG
1 TTTAGGG
1243797 TGTTAGGG
1 T-TTAGGG
1243805 TTGTAAGGG
1 TT-T-AGGG
1243814 TTTAGGG
1 TTTAGGG
1243821 TTTA-GG
1 TTTAGGG
*
1243827 TTTCGGG
1 TTTAGGG
*
1243834 TTTCGGG
1 TTTAGGG
*
1243841 TTTTGGG
1 TTTAGGG
*
1243848 TTT-TGG
1 TTTAGGG
* *
1243854 -TTCGAG
1 TTTAGGG
**
1243860 TTTTCGG
1 TTTAGGG
*
1243867 TTTCGGG
1 TTTAGGG
***
1243874 TTTTTCG
1 TTTAGGG
*
1243881 TTTCGGG
1 TTTAGGG
*
1243888 TTATTCGGG
1 -T-TTAGGG
*
1243897 -TTCGGG
1 TTTAGGG
*
1243903 TTTCCGGG
1 TTT-AGGG
1243911 TTTTA-GG
1 -TTTAGGG
*
1243918 TTTCGGG
1 TTTAGGG
*
1243925 TTTTCGGG
1 -TTTAGGG
*
1243933 TTTTCGGG
1 -TTTAGGG
*
1243941 TTT-CGG
1 TTTAGGG
**
1243947 TTCGGGG
1 TTTAGGG
*
1243954 TTTCGGG
1 TTTAGGG
*
1243961 TTTCGGG
1 TTTAGGG
1243968 -TTAGGG
1 TTTAGGG
*
1243974 TTTTGCGGG
1 -TTT-AGGG
*
1243983 TTTCGGG
1 TTTAGGG
*
1243990 TTTCGGG
1 TTTAGGG
*
1243997 TTTCGGG
1 TTTAGGG
*
1244004 TTTTCGGG
1 -TTTAGGG
*
1244012 TTT-CGG
1 TTTAGGG
*
1244018 -TTCGGG
1 TTTAGGG
*
1244024 TTTCGGG
1 TTTAGGG
*
1244031 TTTCGGG
1 TTTAGGG
*
1244038 TTTCGGG
1 TTTAGGG
*
1244045 TTTCGGG
1 TTTAGGG
*
1244052 TTTTCGGG
1 -TTTAGGG
1244060 TTTCAGGG
1 TTT-AGGG
*
1244068 -TTCGGG
1 TTTAGGG
*
1244074 TTTCGGG
1 TTTAGGG
1244081 TTTACGGG
1 TTTA-GGG
*
1244089 TTTTTCGGG
1 --TTTAGGG
1244098 TTTTAGGG
1 -TTTAGGG
*
1244106 TTTCGGG
1 TTTAGGG
*
1244113 TTTCGGG
1 TTTAGGG
*
1244120 TTTCGGG
1 TTTAGGG
*
1244127 TTTCGGG
1 TTTAGGG
*
1244134 TTTCGGG
1 TTTAGGG
1244141 TTTCAGGG
1 TTT-AGGG
1244149 TTT
1 TTT
1244152 TCGGGTTTTT
Statistics
Matches: 796, Mismatches: 77, Indels: 147
0.78 0.08 0.14
Matches are distributed among these distances:
5 19 0.02
6 117 0.15
7 453 0.57
8 152 0.19
9 43 0.05
10 11 0.01
11 1 0.00
ACGTcount: A:0.04, C:0.05, G:0.47, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Found at i:1243864 original size:27 final size:27
Alignment explanation
Indices: 1243446--1250007 Score: 1354
Period size: 29 Copynumber: 225.7 Consensus size: 27
1243436 GGGGTTTTGG
* * *
1243446 GGTTTGGGGTTT-GGGTTTGGGGTTTGG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
* * * *
1243473 GGTGT-GGGTTTTGGGGTTTGGGTTTGG
1 GGTTTCGGG-TTTAGGGTTTTGGTTTCG
** * * *
1243500 GGTTGGGGGTTTGGGGTTTGGGTTTGG
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
* * * *
1243527 GGTTTGGGGTTTGGGGTTTGGGGTTTGG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
* * *
1243555 GGTTTGTGGGTTTGGGGTTTTTGGGTTTGG
1 GGTTT-CGGGTTTAGGG-TTTT-GGTTTCG
* * *
1243585 GGTTTTGGGGTTT-GGG-TTTGGGTTGG
1 GG-TTTCGGGTTTAGGGTTTTGGTTTCG
* * ** *
1243611 GGTTTGGGGTTTGGGGTTGGGGTTTGG
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
* **
1243638 GGTTT-GGGTTT-GGGGTTT--TTGAG
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
* * *
1243661 GTTTTCGGGTTTCGGGTTTTCGGGTTTGG
1 GGTTTCGGGTTTAGGGTTTT--GGTTTCG
*
1243690 GGTTTCGGGTTTCGAGGTTTATGGTTTCG
1 GGTTTCGGGTTTAG-GGTTT-TGGTTTCG
** *
1243719 GGTTTTAGG-TTAGGGTTTTAGGGTTTAG
1 GGTTTCGGGTTTAGGGTTTT--GGTTTCG
* *
1243747 GGTTTCGGGTTTAGGGTTTAGGGTTTAG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
* * *
1243775 GG-TTAGGGTTTAGGGTTTAGGGTGTTAG
1 GGTTTCGGGTTTAGGGTTT-TGGT-TTCG
* *
1243803 GGTTGTAAGGGTTTAGGGTTTAGGTTTCG
1 GGTT-T-CGGGTTTAGGGTTTTGGTTTCG
*
1243832 GGTTTCGGGTTTTGGGTTTTGG-TTCG
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
* * *
1243858 AGTTTTC-GGTTTCGGGTTTTTCGTTTCG
1 -GGTTTCGGGTTTAGGG-TTTTGGTTTCG
*
1243886 GGTTATTCGGGTTCGGGTTTCCGGGTTTTAGGTTTCG
1 GG----T----TTCGGGTTT-AGGGTTTT-GGTTTCG
* *
1243923 GGTTTTCGGGTTTTCGGGTTTCGG-TTCGG
1 GG-TTTCGGG-TTTAGGGTTTTGGTTTC-G
* **
1243952 GGTTTCGGGTTTCGGGTTAGGGTTTTGCG
1 GGTTTCGGGTTTAGGGTTTTGG-TTT-CG
* *
1243981 GGTTTCGGGTTTCGGGTTTCGGGTTTTCG
1 GGTTTCGGGTTTAGGGTTT-TGG-TTTCG
* *
1244010 GGTTTC-GG-TTCGGGTTTCGGGTTTCG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
*
1244036 GGTTTCGGGTTTCGGGTTTTCGGGTTTCAG
1 GGTTTCGGGTTTAGGGTTTT--GGTTTC-G
* *
1244066 GG-TTCGGGTTTCGGGTTTACGGGTTTTTCG
1 GGTTTCGGGTTTAGGGTTT--TGG--TTTCG
* * *
1244096 GGTTTTAGGGTTTCGGGTTTCGGGTTTCG
1 GG-TTTCGGGTTTAGGGTTT-TGGTTTCG
* *
1244125 GGTTTCGGGTTTCGGGTTTCAGGGTTTTCG
1 GGTTTCGGGTTTAGGGTTT--TGG-TTTCG
* *
1244155 GGTTTTTCGGGTTTCGGGTTTCCGAGGTTTCG
1 GG--TTTCGGGTTTAGGGTTT---TGGTTTCG
* *
1244187 GG-TTCGGGTTTACGGTTTATCTGGTTGCG
1 GGTTTCGGGTTTA-GGGTT-T-TGGTTTCG
**
1244216 AGAGTTTCGGGTTTA---TTCGAGGGTTTTCG
1 -G-GTTTCGGGTTTAGGGTT--TTGG-TTTCG
*
1244245 GGTTTCGGGTTTA-GGTTTCGGTTTCG
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
* *
1244271 GGTTTC-GGTTATCGGGTGCGGTTCGGGTTTCG
1 GGTTTCGGGTT-TAGGGT----TT-TGGTTTCG
*
1244303 GGTTTTCGGGTTGCACGGGTTTTCGGGTTTC-
1 GG-TTTCGGGTT-TA-GGGTTTT--GGTTTCG
* *
1244334 GGTTTCGGGTTTCGGGTTTCGGGTTTCG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
* *
1244362 GGTTTCGAGGTTTCGGGTTTCGAGGTTGTCG
1 GGTTTCG-GGTTTAGGGTTT--TGGTT-TCG
*
1244393 GGTTTCGGGTTATCCAGGGTTTCGGGTTAGT-G
1 GGTTTCGGGTT-T--AGGGTTT-TGGTT--TCG
*
1244425 GGTTTCGGGATTTCCGAAGG-TTTGGTTATCG
1 GGTTTCGGG-TTT---AGGGTTTTGGTT-TCG
* * * *
1244456 GGTTTTC-TG-TT-CGGTTTCCAGAAGGTTTCA
1 GG-TTTCGGGTTTAGGGTTT-----TGGTTTCG
* *
1244486 GGTTTCGGTTTTTCGGGGTTTTCGGGTTTCG
1 GGTTTCGG-GTTT-AGGGTTTT--GGTTTCG
* ** *
1244517 GGTTAGCGGGTAATGCGGGTTTCGGGTTTCG
1 GGTT-TCGGGT--TTAGGGTTT-TGGTTTCG
* *
1244548 GGTTTCGGGTTTCGGGTTTCGTGTTTCG
1 GGTTTCGGGTTTAGGGTTTTG-GTTTCG
* *
1244576 ATGTTTCGGGTTCT-GGG-TTGGGTTTCGG
1 -GGTTTCGGGTT-TAGGGTTTTGGTTTC-G
* *
1244604 GGTTTCGGGTTTCGGGTTTCGGAGTTTC-
1 GGTTTCGGGTTTAGGGTTT-TG-GTTTCG
* * * *
1244632 GGCTTCGGGGTTCGGGTTTCTGGGTTCG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
* * *
1244660 GGTTTTCGGTTTTCGGGTTTCGG-TTCG
1 GG-TTTCGGGTTTAGGGTTTTGGTTTCG
* *
1244687 GGTTTCGGGTTTCGGGTTTCGGGTTTCG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
* * * *
1244715 GGAATTTTCAGGGTTTCGGG-TTCGTTTGTAG
1 GG---TTTC-GGGTTTAGGGTTTTGGTT-TCG
* *
1244746 GGTTTTCGGTTTTACGGGTTTCGGGTTTCG
1 GG-TTTCGGGTTTA-GGGTTT-TGGTTTCG
*
1244776 GTTTTCGGGTTAATCA-GGTATTTGCGGGTTTCG
1 GGTTTCGGGTT--T-AGGGT-TTT---GGTTTCG
* *
1244809 GGTTTC-GG-TTCGGGTTTCGG-TTCG
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
** *
1244833 GGTTTTCGGGGTTTCCGGTTTCGGGTTTCG
1 GG-TTTC-GGGTTTAGGGTTT-TGGTTTCG
* * **
1244863 GGTTTCGGGTTTCGTGTTCGGGTTTCG
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
* * *
1244890 GGTTGCGGGTTTCGGGTTATCGGGTATTTCAG
1 GGTTTCGGGTTTAGGGTT-T-TGG--TTTC-G
* * *
1244922 GTTATTC-GGTTTCGGGTATTCGGGTTTC-
1 GGT-TTCGGGTTTAGGGT-TT-TGGTTTCG
* *
1244950 GGTTTCGGGATTTCGGGTTTCGGGTTTCG
1 GGTTTCGGG-TTTAGGGTTT-TGGTTTCG
* *
1244979 GTTTTCGGG--TACGGGTTTTCGGGTTCG
1 GGTTTCGGGTTTA-GGGTTTT-GGTTTCG
* *
1245006 AGGTTTCGGTTGGTTATCGATGGTTTTCGGGTTCGG
1 -GGTTTC-G--GGTT-T--AGGGTTTT-GGTTTC-G
* *
1245042 GGTTTCGGGTTATCGGGTTTCGGGTTTCG
1 GGTTTCGGGTT-TAGGGTTT-TGGTTTCG
** *
1245071 GGTTTTCGGGTTCCGGGTTTCGGGTTTCG
1 GG-TTTCGGGTTTAGGGTTT-TGGTTTCG
*
1245100 GGTTTCGGGGTTTACGGG-TTCGGTTTTC-
1 GGTTTC-GGGTTTA-GGGTTTTGG-TTTCG
** *
1245128 GGTTTCGGGTTGCGGGTTTCGAGGTTTCG
1 GGTTTCGGGTTTAGGGTTT--TGGTTTCG
* * *
1245157 GGTTTCGGGGTT-GGGTTTCGGGTTGCG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
* *
1245184 AGTTTTCGAGGTTTCGGG--TT--TTTCG
1 -GGTTTCG-GGTTTAGGGTTTTGGTTTCG
* **
1245209 GG-TTC-GGTTTCGAGAGTTCGGGTTTCG
1 GGTTTCGGGTTT--AGGGTTTTGGTTTCG
* *
1245236 GGTTTC--GTTTCGGGTTATGCGGGTTTCG
1 GGTTTCGGGTTTAGGGTT-T--TGGTTTCG
*
1245264 GGTTTCGGGTATATACCGGTTTTAGGGTTTACG
1 GGTTTCGGGT-T-TA-GGGTTTT--GGTTT-CG
*
1245297 GGCTTTCGGGTATTAGGG--GT-G-TTCG
1 GG-TTTCGGGT-TTAGGGTTTTGGTTTCG
*
1245322 GGTTATCGGGTTTCGGGATTTTCGGGTTTCG
1 GGTT-TCGGGTTTAGGG-TTTT--GGTTTCG
* *
1245353 AGGTTTCGGGATTTCGGGTTTCGGTTTCG
1 -GGTTTCGGG-TTTAGGGTTTTGGTTTCG
* *
1245382 GGTATTATCGGGTTTCGAGGTTTTCGGGGTTC-
1 GG--TT-TCGGGTTTAG-GGTTTT--GGTTTCG
* *
1245414 GGTTTC-GGTTATCGGGTTTCGGGTTTCG
1 GGTTTCGGGTT-TAGGGTTT-TGGTTTCG
* * * **
1245442 GGTGTACCAGGTTTTCGGGGTATCGGGTTTCG
1 GGT-T-TC-GGGTTT-AGGGT-TTTGGTTTCG
* ** *
1245474 GGATTTCCGGTTGGCGGGTTTCGGGTTTCG
1 GG-TTTCGGGTT-TAGGGTTT-TGGTTTCG
* *
1245504 GGTTTCGGGTTTCGGGTTTCGGTTTCG
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
* *
1245531 GGTTTCGGGTTTTCGGGTTTCGGGTTTCG
1 GGTTTCGGG-TTTAGGGTTT-TGGTTTCG
*
1245560 GGTTTCGGGTTTCGGGTTTTCGGGTTTCCG
1 GGTTTCGGGTTTAGGGTTTT--GGTTT-CG
*
1245590 GGTTTCGGGTTT-GCAGG--TT--TATCG
1 GGTTTCGGGTTTAG--GGTTTTGGTTTCG
* *
1245614 GGTATTTCGGG-TTCGGGTTTCGGTTTCG
1 GG--TTTCGGGTTTAGGGTTTTGGTTTCG
* * *
1245642 GGTTTTCGGTTTTCGGGTCATTCGGGTTTCG
1 GG-TTTCGGGTTTAGGGT--TT-TGGTTTCG
*
1245673 GGTTTCGGGTTTTTA-GGTATTCGGGTTTTCG
1 GGTTTCGGG--TTTAGGGT-TT-TGG-TTTCG
* *
1245704 GGTGTTCAGGGTTTTCGGGTTTCGGGTTTCGG
1 GGT-TTC-GGG-TTTAGGGTTT-TGGTTTC-G
* *
1245736 GGTTACGGGTTTCGGGTTTTCGGGTTTCG
1 GGTTTCGGGTTTAGGGTTTT--GGTTTCG
* * * *
1245765 GGTTTTCGGGTTTCGGGTGTCGAGTTGCG
1 GG-TTTCGGGTTTAGGGTTTTG-GTTTCG
** *
1245794 GGTTTTCGGGTTGGGCGGAGTTTCGGTTTCG
1 GG-TTTCGGGTT--TAGG-GTTTTGGTTTCG
* *
1245825 GG-TTCGAGGTTTCGGGGTTTCGGGAGTTTC-
1 GGTTTCG-GGTTT-AGGGTTT--TG-GTTTCG
* *
1245855 GGTTACGGGTATTTCAGGG-TTT--TTGCG
1 GGTTTCGGG--TTT-AGGGTTTTGGTTTCG
** *
1245882 GGTTTTCGGGTTGCGGGTTTCGGGTTTCCG
1 GG-TTTCGGGTTTAGGGTTT-TGGTTT-CG
* * **
1245912 GGTTTCGGGTGTCGGGTTGCGGGTTTCG
1 GGTTTCGGGTTTAGGGTT-TTGGTTTCG
*
1245940 GGTTTC-GGTTTCCGGGTTTTTGGTTTC-
1 GGTTTCGGGTTT-AGGG-TTTTGGTTTCG
* * *
1245967 GGTTTCGGGGTT-CGGTTTCGGGTTTCG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
* * *
1245994 GAGATTTAGGGTTTCGGGTTTCGGTTTATCG
1 G-G-TTTCGGGTTTAGGGTTTTGG-TT-TCG
* * *
1246025 GGTTTTCGGGTTTTCGGGTTTCAGAGGTTGCG
1 GG-TTTCGGG-TTTAGGGTTT---TGGTTTCG
* *
1246057 GGTTTCGGAGTTTCGGGTATTCGGGTTTCTCG
1 GGTTTCGG-GTTTAGGGT-TT-TGG-TT-TCG
* ** *
1246089 GGTTTCGGGATATTCGGGTGTCGGGTATCG
1 GGTTTCGGG-T-TTAGGGT-TTTGGTTTCG
*
1246119 GGTTTTCGGGTGTCAGGGTTTTCGGGGTTTCG
1 GG-TTTCGGGT-TTAGGGTTTT---GGTTTCG
* *
1246151 GGTTTCGGGTTTTCGGGTTTCGG-TTCG
1 GGTTTCGGG-TTTAGGGTTTTGGTTTCG
* *
1246178 GGTTTC-GG-TTCGGGATTTCGGTTGTTCAGG
1 GGTTTCGGGTTTAGGG-TTTTGG-T-TTC--G
* ** ***
1246208 GGGTTCGGGTTCGGGGTCCGGGGTTATCG
1 GGTTTCGGGTTTAGGGT-TTTGGTT-TCG
*
1246237 GGTTTTCGGGTTTCAGGGTTTCGGGTTTCG
1 GG-TTTCGGGTTT-AGGGTTT-TGGTTTCG
* * *
1246267 GTTTTCGGGATTT-GGG-TTCGAGGTTCG
1 GGTTTCGGG-TTTAGGGTTTTG-GTTTCG
* *
1246294 GGTTTCGGGTTTCGGG--TT-G---CC
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
* *
1246315 GGTTTCGGG-TTCGGGTTTCGGTTTCG
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
* **
1246341 GG-TTCGGGTTT-CGGTTCGGGTTTCG
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
*
1246366 GGTTTCGGG-TTACGGGTTTCGGGTTTC-
1 GGTTTCGGGTTTA-GGGTTT-TGGTTTCG
* *
1246393 GGTTTCGGGGATTTCA-GGTCTTCGGGTTCAG
1 GGTTTC-GGG-TTT-AGGGT-TTTGGTTTC-G
*
1246424 GGTTTCGGGTTTCA-GGTTTCGGGTTTCG
1 GGTTTCGGGTTT-AGGGTTT-TGGTTTCG
* * * *
1246452 GGTTT-GGATTT-CGGTTTCGGTGTCG
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
* * *
1246477 GGTTTCGGTTTTTCGGGTTTCGGGTTTCG
1 GGTTTCGG-GTTTAGGGTTT-TGGTTTCG
* *
1246506 GGCCTTTCGGGTTTTCGAGGGGTCTGGTTTCG
1 GG--TTTCGGG-TTT--AGGGTTTTGGTTTCG
* * *
1246538 GGTTTCGGG-TTATTGGTTTAGGGTGTCG
1 GGTTTCGGGTTTA-GGGTTT-TGGTTTCG
** *
1246566 CGGTTTC-GG-TTA-GGTTCGGGGTTCG
1 -GGTTTCGGGTTTAGGGTTTTGGTTTCG
* * *
1246591 AGGTTTAAGGGTTT-CGGTTTCGGGGTGGTTCG
1 -GGTTT-CGGGTTTAGGGTTT--TGGT--TTCG
*
1246623 GGTTTCGGGTTTCGGGTTTTTCGGGTTTCG
1 GGTTTCGGGTTTAGGG-TTTT--GGTTTCG
* *
1246653 GG-TTCGGGTTTCGGAGTTTCGGGTTTCG
1 GGTTTCGGGTTTAGG-GTTT-TGGTTTCG
* * *
1246681 GAGTTTCGGGTTTTTCCGGGTTTTCGTGTCG
1 G-GTTTCGGG--TTT-AGGGTTTTGGTTTCG
* *
1246712 GGTATTCGGG-TTCGAGGTTTCGGGTATTTCG
1 GGT-TTCGGGTTTAG-GGTTT-TGG--TTTCG
* * *
1246743 GGTTTCGGGTTTCGGGTTTCGGGTTCG
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
* *
1246770 GGTTTCAGGAGTTTCGGGTTTCGGTTTTTCG
1 GGTTTC-GG-GTTTAGGGTTTTGG--TTTCG
* *
1246801 GGTTTCGGGTGTT-CGGTTTCGGTGTTCG
1 GGTTTCGGGT-TTAGGGTTTTGGT-TTCG
* *
1246829 GGTTTCGGGTTTTTGCGGGTTTCGGGTTTCG
1 GGTTTCGGG--TTT-AGGGTTT-TGGTTTCG
*
1246860 AGGTTT-GCGGTTT-CGGTATTTAGGGGTTTCG
1 -GGTTTCG-GGTTTAGGGT-TTT---GGTTTCG
**
1246891 GGTTTTCGGG-TTAGGGTTCGGGTTT-G
1 GG-TTTCGGGTTTAGGGTTTTGGTTTCG
*
1246917 GGTTTGCGGGGTTTTCGGGTTTTCGGGTTTCG
1 GGTTT-C-GGG-TTTAGGGTTTT--GGTTTCG
* *
1246949 GGTTTC-GGTTTCGGGTTTCGGGGTCGTTTTCG
1 GGTTTCGGGTTTAGGGTTT-----T-GGTTTCG
*
1246981 GGTTTTCGGAGTTTAGGGTGTCTGGTTTCG
1 GG-TTTCGG-GTTTAGGGT-TTTGGTTTCG
**
1247011 GGTTTTC-GGTTTATCGGGTTTTCGGGTTGAG
1 GG-TTTCGGGTTTA--GGGTTTT--GGTTTCG
* ** *
1247042 GGTTTAGGGTGTGCGGGTTTCGGGTTTCG
1 GGTTTCGGGT-TTAGGGTTT-TGGTTTCG
* *
1247071 GG-TTCGGGTTTCGGGTTTCGGGTTTCG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
* **
1247098 GGTATACGGGGTTTCAGGGTATCGGGTTTCCGG
1 GGT-TTC-GGGTTT-AGGGT-TTTGGTTT-C-G
* * **
1247131 GGTTTCGGTTTTCGGGGTTCGGGTTTCG
1 GGTTTCGGGTTT-AGGGTTTTGGTTTCG
* **
1247159 GG-TTCGGGTTTCGGGATGTCGGGTTTCG
1 GGTTTCGGGTTTAGGG-T-TTTGGTTTCG
* *
1247187 GGTTTCGGAGATTTCGGG-GTT--TTTCG
1 GGTTTCGG-G-TTTAGGGTTTTGGTTTCG
* * *
1247213 GGTTTCGGGTGTCGGGTTTCGGGTTTCG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
* * *
1247241 GGTTTAAGGAGTTTCGGGTTTTCGGGGTTCG
1 GGTTT-CGG-GTTTAGGGTTTT--GGTTTCG
* * **
1247272 GGGTTC-GGTTTCGAGCGTTCGGAGTTTCG
1 GGTTTCGGGTTT--AGGGTTTTG-GTTTCG
* *
1247301 GG-TTCGAGGTTTCGGGATTTCGGTTTCG
1 GGTTTCG-GGTTTAGGG-TTTTGGTTTCG
* *
1247329 GGTTTCGGGATTTTCGGGCTTTCGGTTTCG
1 GGTTTCGGG--TTTAGGG-TTTTGGTTTCG
* * *
1247359 GGTTTCGAGTTT-CGGTATTAGGGTTTCG
1 GGTTTCGGGTTTAGGGT-TT-TGGTTTCG
* *
1247387 GGTTTGCGGGTTTCGGGTTTCGGGTTTCG
1 GGTTT-CGGGTTTAGGGTTT-TGGTTTCG
* *
1247416 GGTTTCGGGTTT-CGGTTTCGGGTTTCGG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTC-G
* *
1247444 GAGTTTACGGGTTTCGGGTTTCGGGTGTT-G
1 G-GTTT-CGGGTTTAGGGTTT-TGGT-TTCG
*
1247474 GGTTTCGGGTTTCGGGTTTTCATGGTTTCG
1 GGTTTCGGGTTTAGGG-TTT--TGGTTTCG
* * *
1247504 GGTTGCGGGTTGGTTCGGAGGTTTCGGGTTTCG
1 GGTTTCGGG-T--TT-AG-GGTTT-TGGTTTCG
** * *
1247537 GGTTTCGAGGTTGCGGGTTTCGGGTTCG
1 GGTTTCG-GGTTTAGGGTTTTGGTTTCG
* *
1247565 GGTTTCGGTTTTAGGGTGTTCGGGTTTGCG
1 GGTTTCGGGTTTAGGGT-TT-TGGTTT-CG
**
1247595 GGTTTCGGGGTTTTAGGGGTTCCGAGGTTTCG
1 GGTTTC-GGG-TTTA-GGGTT--TTGGTTTCG
* * ****
1247627 AGATTTCGGGTTTCGGGTTTCTGGAGGGAG
1 -GGTTTCGGGTTTAGGGTTT-TGG-TTTCG
* * **
1247657 GGTTATCAGGTTTTCGGAGTTGCGGGTTTCG
1 GGTT-TC-GGGTTTAGG-GTT-TTGGTTTCG
* *
1247688 GGTTTCGGGTTTCGGGGTTTCGGGTTTCG
1 GGTTTCGGGTTT-AGGGTTT-TGGTTTCG
1247717 GGTTTC-GGTTTCAGGGTATTCCTGGTTTC-
1 GGTTTCGGGTTT-AGGGT-TT--TGGTTTCG
* *
1247746 GGTTTCGGGTTTCGGGTTTCAGTGTTT-G
1 GGTTTCGGGTTTAGGGTTT-TG-GTTTCG
* * *
1247774 GGTTT-GGGTATTCGGGTTTCCGGGTTCG
1 GGTTTCGGGT-TTAGGGTTT-TGGTTTCG
* * * *
1247802 GTTTTTATAGGGTTTCGGGTTTGGGTTTCGG
1 G--GTT-TCGGGTTTAGGGTTTTGGTTTC-G
*
1247833 GGTTTTCCTGGGTTTCGGGTTTTCGGGTTTACG
1 GG-TTT-C-GGGTTTAGGGTTTT--GGTTT-CG
* *
1247866 GGTTTCGGGGTTT-CGGTTTCGGGTTTTCG
1 GGTTTC-GGGTTTAGGGTTT-TGG-TTTCG
* * **
1247895 GTTTTCGGGTTTCGGGTGTCGGGTTTACG
1 GGTTTCGGGTTTAGGGT-TTTGGTTT-CG
* *
1247924 GG-TTC-GGTTTCGGGTTTAGGGTTTCG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
* * *
1247950 GGTTTTAGGGTTTCGGGTTTCGGGTTTCG
1 GG-TTTCGGGTTTAGGGTTT-TGGTTTCG
* *
1247979 AGTTTCGGG-TT-GCTGTTTTCGGGTTTCG
1 GGTTTCGGGTTTAG-GGTTTT--GGTTTCG
* * * *
1248007 GG-TTCGGGGTTCGGGTTTCGGGTTCG
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
* *
1248033 GGTTGCGGGTTT-CGGTATTTCGGGTTATCG
1 GGTTTCGGGTTTAGGGT-TTT--GGTT-TCG
* * * *
1248063 GAGTTGCGGGTTTCGGGTTTAGGGTTCG
1 G-GTTTCGGGTTTAGGGTTTTGGTTTCG
* * * *
1248091 GGTATTCATGTTTTCGGGGTTTCGGTTTCG
1 GGT-TTC-GGGTTT-AGGGTTTTGGTTTCG
**
1248121 GGTTTCGGGTTT-GGGTTCGGGTTTCGG
1 GGTTTCGGGTTTAGGGTTTTGGTTTC-G
1248148 AGGTTTCGGGTTTACGGGTTTTCGGTTTCGG
1 -GGTTTCGGGTTTA-GGGTTTT-GGTTTC-G
* **
1248179 GGTTTCGGGTTTCGGGTTCAGGGTTTCGG
1 GGTTTCGGGTTTAGGGTT-TTGGTTTC-G
1248208 GGTTTCGGGTTTTAGAGG--TT--TTTCG
1 GGTTTCGGG-TTTAG-GGTTTTGGTTTCG
* *
1248233 GGTTAGCGGGTTTTCGGGTTTTCGGGTTTCCG
1 GGTT-TCGGG-TTTAGGGTTTT--GGTTT-CG
* * *
1248265 GGTTTCGAGGTGT-CGGTTTCGGGTTTCGG
1 GGTTTCG-GGTTTAGGGTTT-TGGTTTC-G
* *
1248294 GGTTTCGGGCTTTTCGGGTTTCGGTTTCG
1 GGTTTCGGG--TTTAGGGTTTTGGTTTCG
** *
1248323 GG-TTCGGAGTTGCGGGTTTTCGGGTTGCG
1 GGTTTCGG-GTTTAGGGTTTT--GGTTTCG
*
1248352 GGTTTCCGGGTTTCGGGTTTTCGGGTTTCG
1 GGTTT-CGGGTTTAGGGTTTT--GGTTTCG
* ** *
1248382 GGTTTCAGGTTTTCGGTGTTCGGTTTCG
1 GGTTTCGGGTTTAGGGT-TTTGGTTTCG
* * * *
1248410 GGTTGCGGGGTTCGGGTTTCGGGTTTTCCG
1 GGTTTCGGGTTTAGGGTTT-TGG-TTT-CG
* ** *
1248440 GGTTTCGGGTTCTTCGGGTTGCGGTTTTG
1 GGTTTCGGG-T-TTAGGGTTTTGGTTTCG
* *
1248469 CGGTTTCGGGTTTTCGGGTTTCGGGTATTCG
1 -GGTTTCGGG-TTTAGGGTTT-TGGT-TTCG
*
1248500 GGTTTGTACGGGTTTCGGGGTTTTAGGGTTTTCCG
1 GG-TT-T-CGGGTTT-AGGGTTTT--GG-TTT-CG
**
1248535 GGTTTCGGGTTTTCGGTTTTCGGGTTTCG
1 GGTTTCGGGTTTAGGGTTTT--GGTTTCG
* *
1248564 GGTTTCGGGTTTCGGGTGTTGGGGTTTCG
1 GGTTTCGGGTTTAGGGT-TT-TGGTTTCG
* * *
1248593 GGTTTCGGG-GTCGGGTTTCGGGTTTCG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
* *
1248620 GGTTTCGGGTTTCGGAGTTATCGGTTTCG
1 GGTTTCGGGTTTAGG-GTT-TTGGTTTCG
* *
1248649 GGTTTCGGGTTTCGGAGTTTGCGGGTTTTTCG
1 GGTTTCGGGTTTAGG-GTTT--TGG--TTTCG
* **
1248681 GAGTTTCGGGTTTCGGGGTTCGGGTTTCCG
1 G-GTTTCGGGTTT-AGGGTTTTGGTTT-CG
* **
1248711 GGTTTCGGGATTTCGGGTTGCGGGTTTCG
1 GGTTTCGGG-TTTAGGGTT-TTGGTTTCG
* * *
1248740 AGGTTTCGGGTTTCGGG-TTTAG-ATCG
1 -GGTTTCGGGTTTAGGGTTTTGGTTTCG
* *
1248766 GGTTTCGGGTTGCA-GGTTTCCGGTATTACG
1 GGTTTCGGGTT-TAGGGTTT-TGGT-TT-CG
* *
1248796 GGTTTCGGGTTTCGGGTTTCGGGTTTCG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
* *
1248824 GGTTTTTCGGACGTTTCGGGTTTCGGGTTTCG
1 GG--TTTCGG--GTTTAGGGTTT-TGGTTTCG
* *
1248856 GGTTTCGGGTTTTCGGGTTTCGGGTTTCG
1 GGTTTCGGG-TTTAGGGTTT-TGGTTTCG
* *
1248885 GGTTTCGGGTTTCGGGTTTCGGGTTTCG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
**
1248913 GGTTTAC-GGTTTCTGG-TTTGGTTGTTCGG
1 GGTTT-CGGGTTTAGGGTTTTGG-T-TTC-G
* *
1248942 AGGTTTCGAGGTTTCGGGGTTTCAGGGTTTCG
1 -GGTTTCG-GGTTT-AGGGTTT--TGGTTTCG
* * *
1248974 GGTTTTCGGCTTTCGGAGTTTACCGGGTGTTCG
1 GG-TTTCGGGTTTAGG-GTTT---TGGT-TTCG
*
1249007 GGTTTTACGGGTGTCAGGGTTTTCGGGTTTCG
1 GG-TTT-CGGGT-TTAGGGTTTT--GGTTTCG
* *
1249039 GGTTTCGGGATTTCGGGTTTCGGGTTTCGG
1 GGTTTCGGG-TTTAGGGTTT-TGGTTTC-G
* * *
1249069 GGATTCGGGATTTCGGGTTTTCGGGTTGTCC
1 GGTTTCGGG-TTTAGGGTTTT--GGTT-TCG
* * *
1249100 GGTTTCGGGTTATCGAGTTTCGGTTTCG
1 GGTTTCGGGTT-TAGGGTTTTGGTTTCG
* ** *
1249128 TGTTTCGGGTTTTCGGTTTCGGGTTTCG
1 GGTTTCGGGTTTAGGGTTT-TGGTTTCG
* * *
1249156 GAGGTTCGGGGTTTCGGGTTTCGGTTTTCG
1 G-GTTTC-GGGTTTAGGGTTTTGG-TTTCG
* **
1249186 GGTGTCAGGGTATTTCGGTTTTCGGGTTTCG
1 GGTTTC-GGGT-TTAGGGTTTT--GGTTTCG
* ** *
1249217 GGTTTTCGAGGTGTTCGGTTTCGGTTTCG
1 GG-TTTCG-GGTTTAGGGTTTTGGTTTCG
* *
1249246 AGG-TTCGGGTTTCGGGTTTCCGGGTTTCG
1 -GGTTTCGGGTTTAGGGTTT--TGGTTTCG
* *
1249275 GGTTTCGGGTTTCGGGTTTCGGTTTCG
1 GGTTTCGGGTTTAGGGTTTTGGTTTCG
*
1249302 GGTTTTCGGGTTTCGGGTTTTCGGTTTCG
1 GG-TTTCGGGTTTAGGGTTTT-GGTTTCG
* *
1249331 GAGTTTCGGGTAGTCGGGTTTTCCGGGTTTCG
1 G-GTTTCGGGT-TTAGGGTTTT---GGTTTCG
** *
1249363 GG-TTCGCGGTTTA---TTCGGGGTTCG
1 GGTTTCG-GGTTTAGGGTTTTGGTTTCG
* *
1249387 GGTTTCGGCGTTTACGGGTTTCGGTTTCTT
1 GGTTTCGG-GTTTA-GGGTTTTGGTTTC-G
* * ** *
1249417 GCTTTCGGGTTTCGGAGTTCGGGTATCG
1 GGTTTCGGGTTTAGG-GTTTTGGTTTCG
** *
1249445 GGATTTCGGGTTTTTCGGTTTCGGGTTTCG
1 GG-TTTCGGG-TTTAGGGTTT-TGGTTTCG
* * *
1249475 GGTTTCGGGTTTCGGGTGTTCGGTGTACG
1 GGTTTCGGGTTTAGGGT-TTTGGT-TTCG
* * * * * *
1249504 CGTATTCAGGTTGACAGGTTTCGGGTTCG
1 GGT-TTCGGGTTTA-GGGTTTTGGTTTCG
* *
1249533 GGTTTCGGGTTGTCGAGGTTTCGGTTTC-
1 GGTTTCGGGTT-TAG-GGTTTTGGTTTCG
* * * *
1249561 TGTTTCGGAGTGTCGGGTTTCGGTTTCCG
1 GGTTTCGG-GTTTAGGGTTTTGGTTT-CG
*
1249590 GGTTTC-GGTTTCGAGGTTTCGTGGTTTCG
1 GGTTTCGGGTTTAG-GGTTT--TGGTTTCG
*
1249619 GGTTTTCCCCCGGGTTTCGGG----GG-TTCG
1 GG-TTT----CGGGTTTAGGGTTTTGGTTTCG
** *
1249646 GGTTTACGGGTTTTCGGTTTCGGTTTCG
1 GGTTT-CGGGTTTAGGGTTTTGGTTTCG
* * *
1249674 GGTATTCGGGGTGTCGGGTTTCGGCGTTTCG
1 GGT-TTC-GGGTTTAGGGTTT-TG-GTTTCG
* *
1249705 GCTTATCGGGTTTCGGG-TTT--TTTCG
1 GGTT-TCGGGTTTAGGGTTTTGGTTTCG
* *
1249730 GGTTT----TTTCGGGTTTCGGGTTTTCG
1 GGTTTCGGGTTTAGGGTTT-TGG-TTTCG
*
1249755 TGGTTTCGGGTATTTCGGGTTTTCGGGTTTCG
1 -GGTTTCGGG--TTTAGGGTTTT--GGTTTCG
* *
1249787 GGTTTCGGGTTTCGGGTTTCGGCTTTCG
1 GGTTTCGGGTTTAGGGTTTTGG-TTTCG
* ** *
1249815 GGTTTCGGGATTTCGGGTTCCCGGGTTGCG
1 GGTTTCGGG-TTTAGGGTT--TTGGTTTCG
* * **
1249845 GGTTTAGGGTTTCCGGGGTTCGGGTTTCG
1 GGTTTCGGGTTT--AGGGTTTTGGTTTCG
*
1249874 GGTTTCGGGTTTAGCGGGGTTTCGGTTTCG
1 GGTTTCGGGTTTA---GGGTTTTGGTTTCG
* * *
1249904 GGTTTC-GGTTTCGGGTTTCGAGATTCG
1 GGTTTCGGGTTTAGGGTTTTG-GTTTCG
*
1249931 GGTGTTC-GGTTT-GGGTTTCGGGTTTCCG
1 GGT-TTCGGGTTTAGGGTTT-TGGTTT-CG
*
1249959 GGTTTCGGGTTTAGGGTTTCGGGTTTCCG
1 GGTTTCGGGTTTAGGGTTT-TGGTTT-CG
*
1249988 GGTTTCGGGTGTTCGGGTTT
1 GGTTTCGGGT-TTAGGGTTT
1250008 CGGTATTTCG
Statistics
Matches: 5164, Mismatches: 662, Indels: 1415
0.71 0.09 0.20
Matches are distributed among these distances:
20 13 0.00
21 17 0.00
22 1 0.00
23 22 0.00
24 49 0.01
25 156 0.03
26 220 0.04
27 587 0.11
28 831 0.16
29 1092 0.21
30 858 0.17
31 588 0.11
32 431 0.08
33 169 0.03
34 53 0.01
35 53 0.01
36 12 0.00
37 12 0.00
ACGTcount: A:0.04, C:0.13, G:0.41, T:0.42
Consensus pattern (27 bp):
GGTTTCGGGTTTAGGGTTTTGGTTTCG
Found at i:1244194 original size:6 final size:7
Alignment explanation
Indices: 1243445--1250010 Score: 5185
Period size: 7 Copynumber: 891.3 Consensus size: 7
1243435 GGGGGTTTTG
*
1243445 GGGTTTG
1 GGGTTTC
1243452 GGGTTT-
1 GGGTTTC
*
1243458 GGGTTTG
1 GGGTTTC
*
1243465 GGGTTTG
1 GGGTTTC
*
1243472 GGGTGT-
1 GGGTTTC
*
1243478 GGGTTTTG
1 GGG-TTTC
1243486 GGGTTT-
1 GGGTTTC
*
1243492 GGGTTTG
1 GGGTTTC
**
1243499 GGGTTGG
1 GGGTTTC
*
1243506 GGGTTTG
1 GGGTTTC
1243513 GGGTTT-
1 GGGTTTC
*
1243519 GGGTTTG
1 GGGTTTC
*
1243526 GGGTTTG
1 GGGTTTC
*
1243533 GGGTTTG
1 GGGTTTC
*
1243540 GGGTTTG
1 GGGTTTC
*
1243547 GGGTTTG
1 GGGTTTC
*
1243554 GGGTTTGT
1 GGGTTT-C
*
1243562 GGGTTTG
1 GGGTTTC
*
1243569 GGGTTTTT
1 GGG-TTTC
*
1243577 GGGTTTG
1 GGGTTTC
*
1243584 GGGTTTTG
1 GGG-TTTC
1243592 GGGTTT-
1 GGGTTTC
1243598 GGGTTT-
1 GGGTTTC
*
1243604 GGG-TTG
1 GGGTTTC
*
1243610 GGGTTTG
1 GGGTTTC
1243617 GGGTTT-
1 GGGTTTC
* *
1243623 GGGGTTG
1 GGGTTTC
*
1243630 GGGTTTG
1 GGGTTTC
1243637 GGGTTT-
1 GGGTTTC
*
1243643 GGGTTTG
1 GGGTTTC
*
1243650 GGGTTTTT
1 GGG-TTTC
1243658 GAGGTTTTC
1 G-GG-TTTC
1243667 GGGTTTC
1 GGGTTTC
1243674 GGGTTTTC
1 GGG-TTTC
*
1243682 GGGTTTG
1 GGGTTTC
1243689 GGGTTTC
1 GGGTTTC
1243696 GGGTTTC
1 GGGTTTC
*
1243703 GAGGTTTA
1 G-GGTTTC
*
1243711 TGGTTTC
1 GGGTTTC
*
1243718 GGGTTTT
1 GGGTTTC
* *
1243725 AGG-TTA
1 GGGTTTC
*
1243731 GGGTTTTA
1 GGG-TTTC
*
1243739 GGGTTTA
1 GGGTTTC
1243746 GGGTTTC
1 GGGTTTC
*
1243753 GGGTTTA
1 GGGTTTC
*
1243760 GGGTTTA
1 GGGTTTC
*
1243767 GGGTTTA
1 GGGTTTC
*
1243774 GGG-TTA
1 GGGTTTC
*
1243780 GGGTTTA
1 GGGTTTC
*
1243787 GGGTTTA
1 GGGTTTC
*
1243794 GGGTGTTA
1 GGGT-TTC
*
1243802 GGGTTGTAA
1 GGGTT-T-C
*
1243811 GGGTTTA
1 GGGTTTC
1243818 GGGTTT-
1 GGGTTTC
*
1243824 AGGTTTC
1 GGGTTTC
1243831 GGGTTTC
1 GGGTTTC
*
1243838 GGGTTTT
1 GGGTTTC
1243845 GGGTTT-
1 GGGTTTC
*
1243851 TGG-TTC
1 GGGTTTC
*
1243857 GAGTTTTC
1 G-GGTTTC
1243865 -GGTTTC
1 GGGTTTC
*
1243871 GGGTTTT
1 GGGTTTC
**
1243878 TCGTTTC
1 GGGTTTC
1243885 GGGTTATTC
1 GGG-T-TTC
1243894 GGG-TTC
1 GGGTTTC
1243900 GGGTTTCC
1 GGGTTT-C
*
1243908 GGGTTTT
1 GGGTTTC
*
1243915 AGGTTTC
1 GGGTTTC
1243922 GGGTTTTC
1 GGG-TTTC
1243930 GGGTTTTC
1 GGG-TTTC
1243938 GGGTTTC
1 GGGTTTC
1243945 -GG-TTC
1 GGGTTTC
1243950 GGGGTTTC
1 -GGGTTTC
1243958 GGGTTTC
1 GGGTTTC
*
1243965 GGG-TTA
1 GGGTTTC
1243971 GGGTTTTGC
1 GGG-TTT-C
1243980 GGGTTTC
1 GGGTTTC
1243987 GGGTTTC
1 GGGTTTC
1243994 GGGTTTC
1 GGGTTTC
1244001 GGGTTTTC
1 GGG-TTTC
1244009 GGGTTTC
1 GGGTTTC
1244016 -GG-TTC
1 GGGTTTC
1244021 GGGTTTC
1 GGGTTTC
1244028 GGGTTTC
1 GGGTTTC
1244035 GGGTTTC
1 GGGTTTC
1244042 GGGTTTC
1 GGGTTTC
1244049 GGGTTTTC
1 GGG-TTTC
1244057 GGGTTTC
1 GGGTTTC
1244064 AGGG-TTC
1 -GGGTTTC
1244071 GGGTTTC
1 GGGTTTC
1244078 GGGTTTAC
1 GGGTTT-C
1244086 GGGTTTTTC
1 GGG--TTTC
*
1244095 GGGTTTTA
1 GGG-TTTC
1244103 GGGTTTC
1 GGGTTTC
1244110 GGGTTTC
1 GGGTTTC
1244117 GGGTTTC
1 GGGTTTC
1244124 GGGTTTC
1 GGGTTTC
1244131 GGGTTTC
1 GGGTTTC
1244138 GGGTTTC
1 GGGTTTC
1244145 AGGGTTTTC
1 -GGG-TTTC
1244154 GGGTTTTTC
1 GGG--TTTC
1244163 GGGTTTC
1 GGGTTTC
1244170 GGGTTTCC
1 GGGTTT-C
1244178 GAGGTTTC
1 G-GGTTTC
1244186 GGG-TTC
1 GGGTTTC
1244192 GGGTTTAC
1 GGGTTT-C
*
1244200 GGTTTATC
1 GGGTT-TC
* *
1244208 TGGTTGC
1 GGGTTTC
1244215 GAGAGTTTC
1 G-G-GTTTC
1244224 GGGTTTATTC
1 GGG--T-TTC
1244234 GAGGGTTTTC
1 --GGG-TTTC
1244244 GGGTTTC
1 GGGTTTC
1244251 GGGTTT-
1 GGGTTTC
*
1244257 AGGTTTC
1 GGGTTTC
1244264 -GGTTTC
1 GGGTTTC
1244270 GGGTTTC
1 GGGTTTC
1244277 -GGTTATC
1 GGGTT-TC
*
1244284 GGG-TGC
1 GGGTTTC
1244290 -GG-TTC
1 GGGTTTC
1244295 GGGTTTC
1 GGGTTTC
1244302 GGGTTTTC
1 GGG-TTTC
*
1244310 GGGTTGCAC
1 GGGTT--TC
1244319 GGGTTTTC
1 GGG-TTTC
1244327 GGGTTTC
1 GGGTTTC
1244334 -GGTTTC
1 GGGTTTC
1244340 GGGTTTC
1 GGGTTTC
1244347 GGGTTTC
1 GGGTTTC
1244354 GGGTTTC
1 GGGTTTC
1244361 GGGTTTC
1 GGGTTTC
1244368 GAGGTTTC
1 G-GGTTTC
1244376 GGGTTTC
1 GGGTTTC
1244383 GAGGTTGTC
1 G-GGTT-TC
1244392 GGGTTTC
1 GGGTTTC
1244399 GGGTTATCC
1 GGGTT-T-C
1244408 AGGGTTTC
1 -GGGTTTC
1244416 GGGTTAGT-
1 GGGTT--TC
1244424 GGGTTTC
1 GGGTTTC
1244431 GGGATTTCC
1 GGG-TTT-C
1244440 GAAGGTTT-
1 G--GGTTTC
1244448 -GGTTATC
1 GGGTT-TC
1244455 GGGTTTTC
1 GGG-TTTC
*
1244463 -TG-TTC
1 GGGTTTC
1244468 -GGTTTCC
1 GGGTTT-C
1244475 AGAAGGTTTC
1 -G--GGTTTC
*
1244485 AGGTTTC
1 GGGTTTC
*
1244492 GGTTTTTC
1 GG-GTTTC
1244500 GGGGTTTTC
1 -GGG-TTTC
1244509 GGGTTTC
1 GGGTTTC
*
1244516 GGGTTAGC
1 GGGTT-TC
*
1244524 GGGTAATGC
1 GGGT--TTC
1244533 GGGTTTC
1 GGGTTTC
1244540 GGGTTTC
1 GGGTTTC
1244547 GGGTTTC
1 GGGTTTC
1244554 GGGTTTC
1 GGGTTTC
1244561 GGGTTTC
1 GGGTTTC
*
1244568 GTGTTTC
1 GGGTTTC
*
1244575 GATGTTTC
1 G-GGTTTC
1244583 GGG-TTC
1 GGGTTTC
1244589 TGGG-TT-
1 -GGGTTTC
1244595 GGGTTTC
1 GGGTTTC
1244602 GGGGTTTC
1 -GGGTTTC
1244610 GGGTTTC
1 GGGTTTC
1244617 GGGTTTC
1 GGGTTTC
1244624 GGAGTTTC
1 GG-GTTTC
*
1244632 -GGCTTC
1 GGGTTTC
*
1244638 GGGGTTC
1 GGGTTTC
1244645 GGGTTTC
1 GGGTTTC
1244652 TGGG-TTC
1 -GGGTTTC
1244659 GGGTTTTC
1 GGG-TTTC
*
1244667 GGTTTTC
1 GGGTTTC
1244674 GGGTTTC
1 GGGTTTC
1244681 -GG-TTC
1 GGGTTTC
1244686 GGGTTTC
1 GGGTTTC
1244693 GGGTTTC
1 GGGTTTC
1244700 GGGTTTC
1 GGGTTTC
1244707 GGGTTTC
1 GGGTTTC
1244714 GGGAATTTTC
1 GGG---TTTC
1244724 AGGGTTTC
1 -GGGTTTC
1244732 GGG-TTC
1 GGGTTTC
* *
1244738 -GTTTGTA
1 GGGTT-TC
1244745 GGGTTTTC
1 GGG-TTTC
*
1244753 GGTTTTAC
1 GGGTTT-C
1244761 GGGTTTC
1 GGGTTTC
1244768 GGGTTTC
1 GGGTTTC
*
1244775 GGTTTTC
1 GGGTTTC
1244782 GGGTTAATC
1 GGGTT--TC
*
1244791 AGGTATTTGC
1 -GG-GTTT-C
1244801 GGGTTTC
1 GGGTTTC
1244808 GGGTTTC
1 GGGTTTC
1244815 -GG-TTC
1 GGGTTTC
1244820 GGGTTTC
1 GGGTTTC
1244827 -GG-TTC
1 GGGTTTC
1244832 GGGTTTTC
1 GGG-TTTC
1244840 GGGGTTTC
1 -GGGTTTC
*
1244848 CGGTTTC
1 GGGTTTC
1244855 GGGTTTC
1 GGGTTTC
1244862 GGGTTTC
1 GGGTTTC
1244869 GGGTTTC
1 GGGTTTC
*
1244876 GTG-TTC
1 GGGTTTC
1244882 GGGTTTC
1 GGGTTTC
*
1244889 GGGTTGC
1 GGGTTTC
1244896 GGGTTTC
1 GGGTTTC
1244903 GGGTTATC
1 GGGTT-TC
1244911 GGGTATTTC
1 GGG--TTTC
*
1244920 AGGTTATTC
1 -GGGT-TTC
1244929 -GGTTTC
1 GGGTTTC
1244935 GGGTATTC
1 GGGT-TTC
1244943 GGGTTTC
1 GGGTTTC
1244950 -GGTTTC
1 GGGTTTC
1244956 GGGATTTC
1 GGG-TTTC
1244964 GGGTTTC
1 GGGTTTC
1244971 GGGTTTC
1 GGGTTTC
*
1244978 GGTTTTC
1 GGGTTTC
*
1244985 GGG-TAC
1 GGGTTTC
1244991 GGGTTTTC
1 GGG-TTTC
1244999 GGG-TTC
1 GGGTTTC
1245005 GAGGTTTC
1 G-GGTTTC
1245013 GGTTGGTTATC
1 -G--GGTT-TC
1245024 GATGGTTTTC
1 G--GG-TTTC
1245034 GGG-TTC
1 GGGTTTC
1245040 GGGGTTTC
1 -GGGTTTC
1245048 GGGTTATC
1 GGGTT-TC
1245056 GGGTTTC
1 GGGTTTC
1245063 GGGTTTC
1 GGGTTTC
1245070 GGGTTTTC
1 GGG-TTTC
*
1245078 GGGTTCC
1 GGGTTTC
1245085 GGGTTTC
1 GGGTTTC
1245092 GGGTTTC
1 GGGTTTC
1245099 GGGTTTC
1 GGGTTTC
1245106 GGGGTTTAC
1 -GGGTTT-C
1245115 GGG-TTC
1 GGGTTTC
*
1245121 GGTTTTC
1 GGGTTTC
1245128 -GGTTTC
1 GGGTTTC
*
1245134 GGGTTGC
1 GGGTTTC
1245141 GGGTTTC
1 GGGTTTC
1245148 GAGGTTTC
1 G-GGTTTC
1245156 GGGTTTC
1 GGGTTTC
*
1245163 GGGGTT-
1 GGGTTTC
1245169 GGGTTTC
1 GGGTTTC
*
1245176 GGGTTGC
1 GGGTTTC
*
1245183 GAGTTTTC
1 G-GGTTTC
1245191 GAGGTTTC
1 G-GGTTTC
1245199 GGGTTTTTC
1 GGG--TTTC
1245208 GGG-TTC
1 GGGTTTC
1245214 -GGTTTC
1 GGGTTTC
1245220 GAGAG-TTC
1 G-G-GTTTC
1245228 GGGTTTC
1 GGGTTTC
1245235 GGGTTTC
1 GGGTTTC
1245242 --GTTTC
1 GGGTTTC
1245247 GGGTTATGC
1 GGGTT-T-C
1245256 GGGTTTC
1 GGGTTTC
1245263 GGGTTTC
1 GGGTTTC
1245270 GGGTATATACC
1 GGGT-T-T--C
* *
1245281 GGTTTTA
1 GGGTTTC
1245288 GGGTTTAC
1 GGGTTT-C
1245296 GGGCTTTC
1 GGG-TTTC
*
1245304 GGGTATTAG
1 GGGT-TT-C
1245313 GGGTGTTC
1 GGGT-TTC
1245321 GGGTTATC
1 GGGTT-TC
1245329 GGGTTTC
1 GGGTTTC
1245336 GGGATTTTC
1 GGG--TTTC
1245345 GGGTTTC
1 GGGTTTC
1245352 GAGGTTTC
1 G-GGTTTC
1245360 GGGATTTC
1 GGG-TTTC
1245368 GGGTTTC
1 GGGTTTC
1245375 -GGTTTC
1 GGGTTTC
1245381 GGGTATTATC
1 GGG--TT-TC
1245391 GGGTTTC
1 GGGTTTC
1245398 GAGGTTTTC
1 G-GG-TTTC
*
1245407 GGGGTTC
1 GGGTTTC
1245414 -GGTTTC
1 GGGTTTC
1245420 -GGTTATC
1 GGGTT-TC
1245427 GGGTTTC
1 GGGTTTC
1245434 GGGTTTC
1 GGGTTTC
*
1245441 GGGTGTACC
1 GGGT-T-TC
*
1245450 AGGTTTTC
1 -GGGTTTC
*
1245458 GGGGTATC
1 -GGGTTTC
1245466 GGGTTTC
1 GGGTTTC
1245473 GGGATTTC
1 GGG-TTTC
* *
1245481 CGGTTGGC
1 GGGTT-TC
1245489 GGGTTTC
1 GGGTTTC
1245496 GGGTTTC
1 GGGTTTC
1245503 GGGTTTC
1 GGGTTTC
1245510 GGGTTTC
1 GGGTTTC
1245517 GGGTTTC
1 GGGTTTC
1245524 -GGTTTC
1 GGGTTTC
1245530 GGGTTTC
1 GGGTTTC
1245537 GGGTTTTC
1 GGG-TTTC
1245545 GGGTTTC
1 GGGTTTC
1245552 GGGTTTC
1 GGGTTTC
1245559 GGGTTTC
1 GGGTTTC
1245566 GGGTTTC
1 GGGTTTC
1245573 GGGTTTTC
1 GGG-TTTC
1245581 GGGTTTCC
1 GGGTTT-C
1245589 GGGTTTC
1 GGGTTTC
1245596 GGGTTTGC
1 GGGTTT-C
*
1245604 AGGTTTATC
1 -GGGTT-TC
1245613 GGGTATTTC
1 GGG--TTTC
1245622 GGG-TTC
1 GGGTTTC
1245628 GGGTTTC
1 GGGTTTC
1245635 -GGTTTC
1 GGGTTTC
1245641 GGGTTTTC
1 GGG-TTTC
*
1245649 GGTTTTC
1 GGGTTTC
1245656 GGGTCATTC
1 GGGT--TTC
1245665 GGGTTTC
1 GGGTTTC
1245672 GGGTTTC
1 GGGTTTC
*
1245679 GGGTTTTT
1 GGG-TTTC
*
1245687 AGGTATTC
1 GGGT-TTC
1245695 GGGTTTTC
1 GGG-TTTC
1245703 GGGTGTTC
1 GGGT-TTC
1245711 AGGGTTTTC
1 -GGG-TTTC
1245720 GGGTTTC
1 GGGTTTC
1245727 GGGTTTC
1 GGGTTTC
*
1245734 GGGGTTAC
1 -GGGTTTC
1245742 GGGTTTC
1 GGGTTTC
1245749 GGGTTTTC
1 GGG-TTTC
1245757 GGGTTTC
1 GGGTTTC
1245764 GGGTTTTC
1 GGG-TTTC
1245772 GGGTTTC
1 GGGTTTC
*
1245779 GGGTGTC
1 GGGTTTC
* *
1245786 GAGTTGC
1 GGGTTTC
1245793 GGGTTTTC
1 GGG-TTTC
*
1245801 GGGTTGGGC
1 GGGTT--TC
1245810 GGAGTTTC
1 GG-GTTTC
1245818 -GGTTTC
1 GGGTTTC
1245824 GGG-TTC
1 GGGTTTC
1245830 GAGGTTTC
1 G-GGTTTC
1245838 GGGGTTTC
1 -GGGTTTC
1245846 GGGAGTTTC
1 -GG-GTTTC
*
1245855 -GGTTAC
1 GGGTTTC
1245861 GGGTATTTC
1 GGG--TTTC
1245870 AGGGTTTTTGC
1 -GGG--TTT-C
1245881 GGGTTTTC
1 GGG-TTTC
*
1245889 GGGTTGC
1 GGGTTTC
1245896 GGGTTTC
1 GGGTTTC
1245903 GGGTTTCC
1 GGGTTT-C
1245911 GGGTTTC
1 GGGTTTC
*
1245918 GGGTGTC
1 GGGTTTC
*
1245925 GGGTTGC
1 GGGTTTC
1245932 GGGTTTC
1 GGGTTTC
1245939 GGGTTTC
1 GGGTTTC
1245946 -GGTTTCC
1 GGGTTT-C
*
1245953 GGGTTTT
1 GGGTTTC
*
1245960 TGGTTTC
1 GGGTTTC
1245967 -GGTTTC
1 GGGTTTC
*
1245973 GGGGTTC
1 GGGTTTC
1245980 -GGTTTC
1 GGGTTTC
1245986 GGGTTTC
1 GGGTTTC
*
1245993 GGAGATTTA
1 GG-G-TTTC
1246002 GGGTTTC
1 GGGTTTC
1246009 GGGTTTC
1 GGGTTTC
*
1246016 GGTTTATC
1 GGGTT-TC
1246024 GGGTTTTC
1 GGG-TTTC
1246032 GGGTTTTC
1 GGG-TTTC
1246040 GGGTTTC
1 GGGTTTC
*
1246047 AGAGGTTGC
1 -G-GGTTTC
1246056 GGGTTTC
1 GGGTTTC
1246063 GGAGTTTC
1 GG-GTTTC
1246071 GGGTATTC
1 GGGT-TTC
1246079 GGGTTTCTC
1 GGG-TT-TC
1246088 GGGTTTC
1 GGGTTTC
1246095 GGGATATTC
1 GGG-T-TTC
*
1246104 GGGTGTC
1 GGGTTTC
*
1246111 GGGTATC
1 GGGTTTC
1246118 GGGTTTTC
1 GGG-TTTC
*
1246126 GGGTGTC
1 GGGTTTC
1246133 AGGGTTTTC
1 -GGG-TTTC
1246142 GGGGTTTC
1 -GGGTTTC
1246150 GGGTTTC
1 GGGTTTC
1246157 GGGTTTTC
1 GGG-TTTC
1246165 GGGTTTC
1 GGGTTTC
1246172 -GG-TTC
1 GGGTTTC
1246177 GGGTTTC
1 GGGTTTC
1246184 -GG-TTC
1 GGGTTTC
1246189 GGGATTTC
1 GGG-TTTC
*
1246197 GGTTGTTC
1 GGGT-TTC
*
1246205 AGGGGGTTC
1 --GGGTTTC
1246214 GGG-TTC
1 GGGTTTC
* *
1246220 GGGGTCC
1 GGGTTTC
1246227 GGGGTTATC
1 -GGGTT-TC
1246236 GGGTTTTC
1 GGG-TTTC
1246244 GGGTTTC
1 GGGTTTC
1246251 AGGGTTTC
1 -GGGTTTC
1246259 GGGTTTC
1 GGGTTTC
*
1246266 GGTTTTC
1 GGGTTTC
1246273 GGGATTT-
1 GGG-TTTC
1246280 GGG-TTC
1 GGGTTTC
1246286 GAGG-TTC
1 G-GGTTTC
1246293 GGGTTTC
1 GGGTTTC
1246300 GGGTTTC
1 GGGTTTC
*
1246307 GGGTTGC
1 GGGTTTC
*
1246314 CGGTTTC
1 GGGTTTC
1246321 GGG-TTC
1 GGGTTTC
1246327 GGGTTTC
1 GGGTTTC
1246334 -GGTTTC
1 GGGTTTC
1246340 GGG-TTC
1 GGGTTTC
1246346 GGGTTTC
1 GGGTTTC
1246353 -GG-TTC
1 GGGTTTC
1246358 GGGTTTC
1 GGGTTTC
1246365 GGGTTTC
1 GGGTTTC
*
1246372 GGGTTAC
1 GGGTTTC
1246379 GGGTTTC
1 GGGTTTC
1246386 GGGTTTC
1 GGGTTTC
1246393 -GGTTTC
1 GGGTTTC
1246399 GGGGATTTC
1 -GGG-TTTC
*
1246408 AGGTCTTC
1 GGGT-TTC
1246416 GGG-TTC
1 GGGTTTC
1246422 AGGGTTTC
1 -GGGTTTC
1246430 GGGTTTC
1 GGGTTTC
*
1246437 AGGTTTC
1 GGGTTTC
1246444 GGGTTTC
1 GGGTTTC
1246451 GGGTTT-
1 GGGTTTC
*
1246457 GGATTTC
1 GGGTTTC
1246464 -GGTTTC
1 GGGTTTC
*
1246470 -GGTGTC
1 GGGTTTC
1246476 GGGTTTC
1 GGGTTTC
*
1246483 GGTTTTTC
1 GG-GTTTC
1246491 GGGTTTC
1 GGGTTTC
1246498 GGGTTTC
1 GGGTTTC
1246505 GGGCCTTTC
1 GGG--TTTC
1246514 GGGTTTTC
1 GGG-TTTC
**
1246522 GAGGGGTC
1 G-GGTTTC
*
1246530 TGGTTTC
1 GGGTTTC
1246537 GGGTTTC
1 GGGTTTC
1246544 GGGTTAT-
1 GGGTT-TC
* *
1246551 TGGTTTA
1 GGGTTTC
*
1246558 GGGTGTC
1 GGGTTTC
1246565 GCGGTTTC
1 G-GGTTTC
*
1246573 GGTTAGGTTC
1 GG---GTTTC
*
1246583 GGGGTTC
1 GGGTTTC
*
1246590 GAGGTTTAA
1 G-GGTTT-C
1246599 GGGTTTC
1 GGGTTTC
1246606 -GGTTTC
1 GGGTTTC
1246612 GGGGTGGTTC
1 -GGGT--TTC
1246622 GGGTTTC
1 GGGTTTC
1246629 GGGTTTC
1 GGGTTTC
1246636 GGGTTTTTC
1 GGG--TTTC
1246645 GGGTTTC
1 GGGTTTC
1246652 GGG-TTC
1 GGGTTTC
1246658 GGGTTTC
1 GGGTTTC
1246665 GGAGTTTC
1 GG-GTTTC
1246673 GGGTTTC
1 GGGTTTC
1246680 GGAGTTTC
1 GG-GTTTC
1246688 GGGTTTTTCC
1 GGG--TTT-C
1246698 GGGTTTTC
1 GGG-TTTC
*
1246706 --GTGTC
1 GGGTTTC
1246711 GGGTATTC
1 GGGT-TTC
1246719 GGG-TTC
1 GGGTTTC
1246725 GAGGTTTC
1 G-GGTTTC
1246733 GGGTATTTC
1 GGG--TTTC
1246742 GGGTTTC
1 GGGTTTC
1246749 GGGTTTC
1 GGGTTTC
1246756 GGGTTTC
1 GGGTTTC
1246763 GGG-TTC
1 GGGTTTC
1246769 GGGTTTC
1 GGGTTTC
1246776 AGGAGTTTC
1 -GG-GTTTC
1246785 GGGTTTC
1 GGGTTTC
*
1246792 GGTTTTTC
1 GG-GTTTC
1246800 GGGTTTC
1 GGGTTTC
1246807 GGGTGTTC
1 GGGT-TTC
1246815 -GGTTTC
1 GGGTTTC
1246821 -GGTGTTC
1 GGGT-TTC
1246828 GGGTTTC
1 GGGTTTC
1246835 GGGTTTTTGC
1 GGG--TTT-C
1246845 GGGTTTC
1 GGGTTTC
1246852 GGGTTTC
1 GGGTTTC
1246859 GAGGTTT-
1 G-GGTTTC
1246866 GCGGTTTC
1 G-GGTTTC
* *
1246874 GGTATTTAG
1 GG-GTTT-C
1246883 GGGTTTC
1 GGGTTTC
1246890 GGGTTTTC
1 GGG-TTTC
*
1246898 GGG-TTA
1 GGGTTTC
1246904 GGG-TTC
1 GGGTTTC
1246910 GGGTTT-
1 GGGTTTC
1246916 GGGTTTGC
1 GGGTTT-C
1246924 GGGGTTTTC
1 -GGG-TTTC
1246933 GGGTTTTC
1 GGG-TTTC
1246941 GGGTTTC
1 GGGTTTC
1246948 GGGTTTC
1 GGGTTTC
1246955 -GGTTTC
1 GGGTTTC
1246961 GGGTTTC
1 GGGTTTC
*
1246968 GGG-GTC
1 GGGTTTC
*
1246974 -GTTTTC
1 GGGTTTC
1246980 GGGTTTTC
1 GGG-TTTC
*
1246988 GGAGTTTA
1 GG-GTTTC
*
1246996 GGGTGTC
1 GGGTTTC
*
1247003 TGGTTTC
1 GGGTTTC
1247010 GGGTTTTC
1 GGG-TTTC
*
1247018 GGTTTATC
1 GGGTT-TC
1247026 GGGTTTTC
1 GGG-TTTC
**
1247034 GGGTTGA
1 GGGTTTC
*
1247041 GGGTTTA
1 GGGTTTC
*
1247048 GGGTGTGC
1 GGGT-TTC
1247056 GGGTTTC
1 GGGTTTC
1247063 GGGTTTC
1 GGGTTTC
1247070 GGG-TTC
1 GGGTTTC
1247076 GGGTTTC
1 GGGTTTC
1247083 GGGTTTC
1 GGGTTTC
1247090 GGGTTTC
1 GGGTTTC
*
1247097 GGGTATAC
1 GGGT-TTC
1247105 GGGGTTTC
1 -GGGTTTC
*
1247113 AGGGTATC
1 -GGGTTTC
1247121 GGGTTTCC
1 GGGTTT-C
1247129 GGGGTTTC
1 -GGGTTTC
*
1247137 GGTTTTC
1 GGGTTTC
*
1247144 GGGGTTC
1 GGGTTTC
1247151 GGGTTTC
1 GGGTTTC
1247158 GGG-TTC
1 GGGTTTC
1247164 GGGTTTC
1 GGGTTTC
*
1247171 GGGATGTC
1 GGG-TTTC
1247179 GGGTTTC
1 GGGTTTC
1247186 GGGTTTC
1 GGGTTTC
1247193 GGAGATTTC
1 GG-G-TTTC
1247202 GGGGTTTTTC
1 -GGG--TTTC
1247212 GGGTTTC
1 GGGTTTC
*
1247219 GGGTGTC
1 GGGTTTC
1247226 GGGTTTC
1 GGGTTTC
1247233 GGGTTTC
1 GGGTTTC
*
1247240 GGGTTTAA
1 GGGTTT-C
1247248 GGAGTTTC
1 GG-GTTTC
1247256 GGGTTTTC
1 GGG-TTTC
*
1247264 GGGGTTC
1 GGGTTTC
*
1247271 GGGGTTC
1 GGGTTTC
1247278 -GGTTTC
1 GGGTTTC
1247284 GAGCG-TTC
1 G-G-GTTTC
1247292 GGAGTTTC
1 GG-GTTTC
1247300 GGG-TTC
1 GGGTTTC
1247306 GAGGTTTC
1 G-GGTTTC
1247314 GGGATTTC
1 GGG-TTTC
1247322 -GGTTTC
1 GGGTTTC
1247328 GGGTTTC
1 GGGTTTC
1247335 GGGATTTTC
1 GGG--TTTC
1247344 GGGCTTTC
1 GGG-TTTC
1247352 -GGTTTC
1 GGGTTTC
1247358 GGGTTTC
1 GGGTTTC
*
1247365 GAGTTTC
1 GGGTTTC
*
1247372 -GGTATTA
1 GGGT-TTC
1247379 GGGTTTC
1 GGGTTTC
1247386 GGGTTTGC
1 GGGTTT-C
1247394 GGGTTTC
1 GGGTTTC
1247401 GGGTTTC
1 GGGTTTC
1247408 GGGTTTC
1 GGGTTTC
1247415 GGGTTTC
1 GGGTTTC
1247422 GGGTTTC
1 GGGTTTC
1247429 -GGTTTC
1 GGGTTTC
1247435 GGGTTTC
1 GGGTTTC
1247442 GGGAGTTTAC
1 -GG-GTTT-C
1247452 GGGTTTC
1 GGGTTTC
1247459 GGGTTTC
1 GGGTTTC
1247466 GGGTGTT-
1 GGGT-TTC
1247473 GGGTTTC
1 GGGTTTC
1247480 GGGTTTC
1 GGGTTTC
1247487 GGGTTTTC
1 GGG-TTTC
*
1247495 ATGGTTTC
1 -GGGTTTC
*
1247503 GGGTTGC
1 GGGTTTC
1247510 GGGTTGGTTC
1 GGG-T--TTC
1247520 GGAGGTTTC
1 -G-GGTTTC
1247529 GGGTTTC
1 GGGTTTC
1247536 GGGTTTC
1 GGGTTTC
*
1247543 GAGGTTGC
1 G-GGTTTC
1247551 GGGTTTC
1 GGGTTTC
1247558 GGG-TTC
1 GGGTTTC
1247564 GGGTTTC
1 GGGTTTC
* *
1247571 GGTTTTA
1 GGGTTTC
1247578 GGGTGTTC
1 GGGT-TTC
1247586 GGGTTTGC
1 GGGTTT-C
1247594 GGGTTTC
1 GGGTTTC
*
1247601 GGGGTTTTAG
1 -GGG-TTT-C
*
1247611 GGGTTCC
1 GGGTTTC
1247618 GAGGTTTC
1 G-GGTTTC
*
1247626 GAGATTTC
1 G-GGTTTC
1247634 GGGTTTC
1 GGGTTTC
1247641 GGGTTTC
1 GGGTTTC
***
1247648 TGGAG-GGA
1 -GG-GTTTC
1247656 GGGTTATC
1 GGGTT-TC
*
1247664 AGGTTTTC
1 -GGGTTTC
*
1247672 GGAGTTGC
1 GG-GTTTC
1247680 GGGTTTC
1 GGGTTTC
1247687 GGGTTTC
1 GGGTTTC
1247694 GGGTTTC
1 GGGTTTC
1247701 GGGGTTTC
1 -GGGTTTC
1247709 GGGTTTC
1 GGGTTTC
1247716 GGGTTTC
1 GGGTTTC
1247723 -GGTTTC
1 GGGTTTC
1247729 AGGGTATTCC
1 -GGGT-TT-C
*
1247739 TGGTTTC
1 GGGTTTC
1247746 -GGTTTC
1 GGGTTTC
1247752 GGGTTTC
1 GGGTTTC
1247759 GGGTTTC
1 GGGTTTC
*
1247766 AGTGTTT-
1 -GGGTTTC
1247773 GGGTTT-
1 GGGTTTC
1247779 GGGTATTC
1 GGGT-TTC
1247787 GGGTTTCC
1 GGGTTT-C
1247795 GGG-TTC
1 GGGTTTC
* *
1247801 GGTTTTTATA
1 GG--GTT-TC
1247811 GGGTTTC
1 GGGTTTC
1247818 GGGTTT-
1 GGGTTTC
1247824 GGGTTTC
1 GGGTTTC
1247831 GGGGTTTTCC
1 -GGG-TTT-C
1247841 TGGGTTTC
1 -GGGTTTC
1247849 GGGTTTTC
1 GGG-TTTC
1247857 GGGTTTAC
1 GGGTTT-C
1247865 GGGTTTC
1 GGGTTTC
1247872 GGGGTTTC
1 -GGGTTTC
1247880 -GGTTTC
1 GGGTTTC
1247886 GGGTTTTC
1 GGG-TTTC
*
1247894 GGTTTTC
1 GGGTTTC
1247901 GGGTTTC
1 GGGTTTC
*
1247908 GGGTGTC
1 GGGTTTC
1247915 GGGTTTAC
1 GGGTTT-C
1247923 GGG-TTC
1 GGGTTTC
1247929 -GGTTTC
1 GGGTTTC
*
1247935 GGGTTTA
1 GGGTTTC
1247942 GGGTTTC
1 GGGTTTC
*
1247949 GGGTTTTA
1 GGG-TTTC
1247957 GGGTTTC
1 GGGTTTC
1247964 GGGTTTC
1 GGGTTTC
1247971 GGGTTTC
1 GGGTTTC
*
1247978 GAGTTTC
1 GGGTTTC
*
1247985 GGGTTGC
1 GGGTTTC
* *
1247992 TGTTTTC
1 GGGTTTC
1247999 GGGTTTC
1 GGGTTTC
1248006 GGG-TTC
1 GGGTTTC
*
1248012 GGGGTTC
1 GGGTTTC
1248019 GGGTTTC
1 GGGTTTC
1248026 GGG-TTC
1 GGGTTTC
*
1248032 GGGTTGC
1 GGGTTTC
1248039 GGGTTTC
1 GGGTTTC
*
1248046 GGTATTTC
1 GG-GTTTC
1248054 GGGTTATC
1 GGGTT-TC
*
1248062 GGAGTTGC
1 GG-GTTTC
1248070 GGGTTTC
1 GGGTTTC
*
1248077 GGGTTTA
1 GGGTTTC
1248084 GGG-TTC
1 GGGTTTC
1248090 GGGTATTC
1 GGGT-TTC
* *
1248098 ATGTTTTC
1 -GGGTTTC
1248106 GGGGTTTC
1 -GGGTTTC
1248114 -GGTTTC
1 GGGTTTC
1248120 GGGTTTC
1 GGGTTTC
1248127 GGGTTT-
1 GGGTTTC
1248133 GGG-TTC
1 GGGTTTC
1248139 GGGTTTC
1 GGGTTTC
1248146 GGAGGTTTC
1 -G-GGTTTC
1248155 GGGTTTAC
1 GGGTTT-C
1248163 GGGTTTTC
1 GGG-TTTC
1248171 -GGTTTC
1 GGGTTTC
1248177 GGGGTTTC
1 -GGGTTTC
1248185 GGGTTTC
1 GGGTTTC
1248192 GGG-TTC
1 GGGTTTC
1248198 AGGGTTTC
1 -GGGTTTC
1248206 GGGGTTTC
1 -GGGTTTC
*
1248214 GGGTTTTA
1 GGG-TTTC
1248222 GAGGTTTTTC
1 G-GG--TTTC
*
1248232 GGGTTAGC
1 GGGTT-TC
1248240 GGGTTTTC
1 GGG-TTTC
1248248 GGGTTTTC
1 GGG-TTTC
1248256 GGGTTTCC
1 GGGTTT-C
1248264 GGGTTTC
1 GGGTTTC
*
1248271 GAGGTGTC
1 G-GGTTTC
1248279 -GGTTTC
1 GGGTTTC
1248285 GGGTTTC
1 GGGTTTC
1248292 GGGGTTTC
1 -GGGTTTC
1248300 GGGCTTTTC
1 GGG--TTTC
1248309 GGGTTTC
1 GGGTTTC
1248316 -GGTTTC
1 GGGTTTC
1248322 GGG-TTC
1 GGGTTTC
*
1248328 GGAGTTGC
1 GG-GTTTC
1248336 GGGTTTTC
1 GGG-TTTC
*
1248344 GGGTTGC
1 GGGTTTC
1248351 GGGTTTCC
1 GGGTTT-C
1248359 GGGTTTC
1 GGGTTTC
1248366 GGGTTTTC
1 GGG-TTTC
1248374 GGGTTTC
1 GGGTTTC
1248381 GGGTTTC
1 GGGTTTC
*
1248388 AGGTTTTC
1 -GGGTTTC
1248396 -GGTGTTC
1 GGGT-TTC
1248403 -GGTTTC
1 GGGTTTC
*
1248409 GGGTTGC
1 GGGTTTC
*
1248416 GGGGTTC
1 GGGTTTC
1248423 GGGTTTC
1 GGGTTTC
1248430 GGGTTTTCC
1 GGG-TTT-C
1248439 GGGTTTC
1 GGGTTTC
1248446 GGGTTCTTC
1 GGG-T-TTC
*
1248455 GGGTTGC
1 GGGTTTC
*
1248462 -GGTTTT
1 GGGTTTC
1248468 GCGGTTTC
1 G-GGTTTC
1248476 GGGTTTTC
1 GGG-TTTC
1248484 GGGTTTC
1 GGGTTTC
1248491 GGGTATTC
1 GGGT-TTC
1248499 GGGTTTGTAC
1 GGG-TT-T-C
1248509 GGGTTTC
1 GGGTTTC
*
1248516 GGGGTTTTA
1 -GGG-TTTC
1248525 GGGTTTTCC
1 GGG-TTT-C
1248534 GGGTTTC
1 GGGTTTC
1248541 GGGTTTTC
1 GGG-TTTC
*
1248549 GGTTTTC
1 GGGTTTC
1248556 GGGTTTC
1 GGGTTTC
1248563 GGGTTTC
1 GGGTTTC
1248570 GGGTTTC
1 GGGTTTC
*
1248577 GGGTGTTG
1 GGGT-TTC
1248585 GGGTTTC
1 GGGTTTC
1248592 GGGTTTC
1 GGGTTTC
*
1248599 GGG-GTC
1 GGGTTTC
1248605 GGGTTTC
1 GGGTTTC
1248612 GGGTTTC
1 GGGTTTC
1248619 GGGTTTC
1 GGGTTTC
1248626 GGGTTTC
1 GGGTTTC
1248633 GGAGTTATC
1 GG-GTT-TC
1248642 -GGTTTC
1 GGGTTTC
1248648 GGGTTTC
1 GGGTTTC
1248655 GGGTTTC
1 GGGTTTC
1248662 GGAGTTTGC
1 GG-GTTT-C
1248671 GGGTTTTTC
1 GGG--TTTC
1248680 GGAGTTTC
1 GG-GTTTC
1248688 GGGTTTC
1 GGGTTTC
*
1248695 GGGGTTC
1 GGGTTTC
1248702 GGGTTTCC
1 GGGTTT-C
1248710 GGGTTTC
1 GGGTTTC
1248717 GGGATTTC
1 GGG-TTTC
*
1248725 GGGTTGC
1 GGGTTTC
1248732 GGGTTTC
1 GGGTTTC
1248739 GAGGTTTC
1 G-GGTTTC
1248747 GGGTTTC
1 GGGTTTC
1248754 GGGTTTAGATC
1 GGG-TT---TC
1248765 GGGTTTC
1 GGGTTTC
*
1248772 GGGTTGC
1 GGGTTTC
*
1248779 AGGTTTC
1 GGGTTTC
*
1248786 CGGTATTAC
1 GGGT-TT-C
1248795 GGGTTTC
1 GGGTTTC
1248802 GGGTTTC
1 GGGTTTC
1248809 GGGTTTC
1 GGGTTTC
1248816 GGGTTTC
1 GGGTTTC
1248823 GGGTTTTTC
1 GGG--TTTC
1248832 GGACGTTTC
1 GG--GTTTC
1248841 GGGTTTC
1 GGGTTTC
1248848 GGGTTTC
1 GGGTTTC
1248855 GGGTTTC
1 GGGTTTC
1248862 GGGTTTTC
1 GGG-TTTC
1248870 GGGTTTC
1 GGGTTTC
1248877 GGGTTTC
1 GGGTTTC
1248884 GGGTTTC
1 GGGTTTC
1248891 GGGTTTC
1 GGGTTTC
1248898 GGGTTTC
1 GGGTTTC
1248905 GGGTTTC
1 GGGTTTC
1248912 GGGTTTAC
1 GGGTTT-C
1248920 -GGTTTC
1 GGGTTTC
*
1248926 TGGTTT-
1 GGGTTTC
*
1248932 GGTTGTTC
1 GGGT-TTC
1248940 GGAGGTTTC
1 -G-GGTTTC
1248949 GAGGTTTC
1 G-GGTTTC
1248957 GGGGTTTC
1 -GGGTTTC
1248965 AGGGTTTC
1 -GGGTTTC
1248973 GGGTTTTC
1 GGG-TTTC
*
1248981 GGCTTTC
1 GGGTTTC
1248988 GGAGTTTACC
1 GG-GTTT--C
1248998 GGGTGTTC
1 GGGT-TTC
1249006 GGGTTTTAC
1 GGG-TTT-C
*
1249015 GGGTGTC
1 GGGTTTC
1249022 AGGGTTTTC
1 -GGG-TTTC
1249031 GGGTTTC
1 GGGTTTC
1249038 GGGTTTC
1 GGGTTTC
1249045 GGGATTTC
1 GGG-TTTC
1249053 GGGTTTC
1 GGGTTTC
1249060 GGGTTTC
1 GGGTTTC
*
1249067 GGGGATTC
1 -GGGTTTC
1249075 GGGATTTC
1 GGG-TTTC
1249083 GGGTTTTC
1 GGG-TTTC
1249091 GGGTTGTC
1 GGGTT-TC
*
1249099 CGGTTTC
1 GGGTTTC
1249106 GGGTTATC
1 GGGTT-TC
*
1249114 GAGTTTC
1 GGGTTTC
1249121 -GGTTTC
1 GGGTTTC
*
1249127 GTGTTTC
1 GGGTTTC
1249134 GGGTTTTC
1 GGG-TTTC
1249142 -GGTTTC
1 GGGTTTC
1249148 GGGTTTC
1 GGGTTTC
*
1249155 GGAGGTTC
1 GG-GTTTC
1249163 GGGGTTTC
1 -GGGTTTC
1249171 GGGTTTC
1 GGGTTTC
*
1249178 GGTTTTC
1 GGGTTTC
*
1249185 GGGTGTC
1 GGGTTTC
1249192 AGGGTATTTC
1 -GGG--TTTC
*
1249202 GGTTTTC
1 GGGTTTC
1249209 GGGTTTC
1 GGGTTTC
1249216 GGGTTTTC
1 GGG-TTTC
1249224 GAGGTGTTC
1 G-GGT-TTC
1249233 -GGTTTC
1 GGGTTTC
1249239 -GGTTTC
1 GGGTTTC
1249245 GAGG-TTC
1 G-GGTTTC
1249252 GGGTTTC
1 GGGTTTC
1249259 GGGTTTCC
1 GGGTTT-C
1249267 GGGTTTC
1 GGGTTTC
1249274 GGGTTTC
1 GGGTTTC
1249281 GGGTTTC
1 GGGTTTC
1249288 GGGTTTC
1 GGGTTTC
1249295 -GGTTTC
1 GGGTTTC
1249301 GGGTTTTC
1 GGG-TTTC
1249309 GGGTTTC
1 GGGTTTC
1249316 GGGTTTTC
1 GGG-TTTC
1249324 -GGTTTC
1 GGGTTTC
1249330 GGAGTTTC
1 GG-GTTTC
*
1249338 GGGTAGTC
1 GGGT-TTC
1249346 GGGTTTTCC
1 GGG-TTT-C
1249355 GGGTTTC
1 GGGTTTC
1249362 GGG-TTC
1 GGGTTTC
1249368 GCGGTTTATTC
1 G-GG--T-TTC
*
1249379 GGGGTTC
1 GGGTTTC
1249386 GGGTTTC
1 GGGTTTC
1249393 GGCGTTTAC
1 GG-GTTT-C
1249402 GGGTTTC
1 GGGTTTC
1249409 -GGTTTC
1 GGGTTTC
* *
1249415 TTGCTTTC
1 -GGGTTTC
1249423 GGGTTTC
1 GGGTTTC
1249430 GGAG-TTC
1 GG-GTTTC
*
1249437 GGGTATC
1 GGGTTTC
1249444 GGGATTTC
1 GGG-TTTC
1249452 GGGTTTTTC
1 GGG--TTTC
1249461 -GGTTTC
1 GGGTTTC
1249467 GGGTTTC
1 GGGTTTC
1249474 GGGTTTC
1 GGGTTTC
1249481 GGGTTTC
1 GGGTTTC
1249488 GGGTGTTC
1 GGGT-TTC
*
1249496 -GGTGTAC
1 GGGT-TTC
*
1249503 GCGTATTC
1 GGGT-TTC
* *
1249511 AGGTTGAC
1 GGGTT-TC
*
1249519 AGGTTTC
1 GGGTTTC
1249526 GGG-TTC
1 GGGTTTC
1249532 GGGTTTC
1 GGGTTTC
1249539 GGGTTGTC
1 GGGTT-TC
1249547 GAGGTTTC
1 G-GGTTTC
1249555 -GGTTTC
1 GGGTTTC
*
1249561 -TGTTTC
1 GGGTTTC
*
1249567 GGAGTGTC
1 GG-GTTTC
1249575 GGGTTTC
1 GGGTTTC
1249582 -GGTTTCC
1 GGGTTT-C
1249589 GGGTTTC
1 GGGTTTC
1249596 -GGTTTC
1 GGGTTTC
1249602 GAGGTTTC
1 G-GGTTTC
1249610 GTGGTTTC
1 G-GGTTTC
1249618 GGGTTTTCCCCC
1 GGG-TTT----C
1249630 GGGTTTC
1 GGGTTTC
*
1249637 GGGGGTTC
1 -GGGTTTC
1249645 GGGTTTAC
1 GGGTTT-C
1249653 GGGTTTTC
1 GGG-TTTC
1249661 -GGTTTC
1 GGGTTTC
1249667 -GGTTTC
1 GGGTTTC
1249673 GGGTATTC
1 GGGT-TTC
*
1249681 GGGGTGTC
1 -GGGTTTC
1249689 GGGTTTC
1 GGGTTTC
1249696 GGCGTTTC
1 GG-GTTTC
*
1249704 GGCTTATC
1 GGGTT-TC
1249712 GGGTTTC
1 GGGTTTC
1249719 GGGTTTTTTC
1 GGG---TTTC
1249729 GGGTTTTTTC
1 GGG---TTTC
1249739 GGGTTTC
1 GGGTTTC
1249746 GGGTTTTC
1 GGG-TTTC
1249754 GTGGTTTC
1 G-GGTTTC
1249762 GGGTATTTC
1 GGG--TTTC
1249771 GGGTTTTC
1 GGG-TTTC
1249779 GGGTTTC
1 GGGTTTC
1249786 GGGTTTC
1 GGGTTTC
1249793 GGGTTTC
1 GGGTTTC
1249800 GGGTTTC
1 GGGTTTC
*
1249807 GGCTTTC
1 GGGTTTC
1249814 GGGTTTC
1 GGGTTTC
1249821 GGGATTTC
1 GGG-TTTC
*
1249829 GGGTTCCC
1 GGGTT-TC
*
1249837 GGGTTGC
1 GGGTTTC
*
1249844 GGGTTTA
1 GGGTTTC
1249851 GGGTTTCC
1 GGGTTT-C
*
1249859 GGGGTTC
1 GGGTTTC
1249866 GGGTTTC
1 GGGTTTC
1249873 GGGTTTC
1 GGGTTTC
1249880 GGGTTTAGC
1 GGGTTT--C
1249889 GGGGTTTC
1 -GGGTTTC
1249897 -GGTTTC
1 GGGTTTC
1249903 GGGTTTC
1 GGGTTTC
1249910 -GGTTTC
1 GGGTTTC
1249916 GGGTTTC
1 GGGTTTC
* *
1249923 GAGATTC
1 GGGTTTC
1249930 GGGTGTTC
1 GGGT-TTC
1249938 -GGTTT-
1 GGGTTTC
1249943 GGGTTTC
1 GGGTTTC
1249950 GGGTTTCC
1 GGGTTT-C
1249958 GGGTTTC
1 GGGTTTC
*
1249965 GGGTTTA
1 GGGTTTC
1249972 GGGTTTC
1 GGGTTTC
1249979 GGGTTTCC
1 GGGTTT-C
1249987 GGGTTTC
1 GGGTTTC
1249994 GGGTGTTC
1 GGGT-TTC
1250002 GGGTTTC
1 GGGTTTC
1250009 GG
1 GG
1250011 TATTTCGGAG
Statistics
Matches: 5510, Mismatches: 437, Indels: 1224
0.77 0.06 0.17
Matches are distributed among these distances:
5 61 0.01
6 634 0.12
7 2706 0.49
8 1446 0.26
9 458 0.08
10 158 0.03
11 38 0.01
12 9 0.00
ACGTcount: A:0.04, C:0.13, G:0.41, T:0.42
Consensus pattern (7 bp):
GGGTTTC
Found at i:1244327 original size:103 final size:103
Alignment explanation
Indices: 1244025--1244383 Score: 263
Period size: 103 Copynumber: 3.4 Consensus size: 103
1244015 CGGTTCGGGT
* *
1244025 TTCGGGTTTCGGGTTTCGGGTTTCGGGTTTTCGGGTTTCAGGG-TTCGGGTT-TCGGGT----TT
1 TTCGGGTTTCGGGTTTCGGGTTTCAGG-TTTCAGGTTTC-GGGTTTC-GGTTATCGGGTGCGGTT
* * *
1244084 ACGGGTTTTTCGGGTTT-TAGGGTTTCG-G-GTTTCGGG--T--
63 -CGGG-TTTAC-GGTTTATCGGGTTGCGAGAGTTTCGGGTTTGA
* *
1244121 TTCGGGTTTCGGGTTTCGGGTTTCAGGGTTTTCGGGTTTTTCGGGTTTCGGGTT-TCCGAGGTTT
1 TTCGGGTTTCGGGTTTCGGGTTTCA-GG-TTTCAGG--TTTCGGGTTTC-GGTTAT-CG-GG-TG
*
1244185 CGGGTTCGGGTTTACGGTTTATCTGGTTGCGAGAGTTTCGGGTTT-A
58 C-GGTTCGGGTTTACGGTTTATCGGGTTGCGAGAGTTTCGGGTTTGA
1244231 TTCGAGGGTTTTCGGGTTTCGGGTTT-AGGTTTC-GGTTTCGGGTTTCGGTTATCGGGTGCGGTT
1 TTC--GGG-TTTCGGGTTTCGGGTTTCAGGTTTCAGGTTTCGGGTTTCGGTTATCGGGTGCGGTT
* *
1244294 CGGGTTT-CGGGTTT-TCGGGTTGC-ACGGGTTTTCGGGTTTCGGT
63 CGGGTTTAC-GGTTTATCGGGTTGCGA-GAG-TTTCGGGTTT--GA
*
1244337 TTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGAGGTTTCGGGTTTCG
1 TTCGGGTTTCGGGTTTCGGGTTTCAGGTTTC-AGGTTTCGGGTTTCG
1244384 AGGTTGTCGG
Statistics
Matches: 222, Mismatches: 10, Indels: 52
0.78 0.04 0.18
Matches are distributed among these distances:
96 24 0.11
97 10 0.05
98 3 0.01
99 13 0.06
100 2 0.01
101 3 0.01
102 12 0.05
103 43 0.19
104 16 0.07
105 13 0.06
106 28 0.13
107 22 0.10
109 3 0.01
110 7 0.03
111 2 0.01
112 4 0.02
113 17 0.08
ACGTcount: A:0.04, C:0.14, G:0.40, T:0.43
Consensus pattern (103 bp):
TTCGGGTTTCGGGTTTCGGGTTTCAGGTTTCAGGTTTCGGGTTTCGGTTATCGGGTGCGGTTCGG
GTTTACGGTTTATCGGGTTGCGAGAGTTTCGGGTTTGA
Found at i:1249730 original size:10 final size:10
Alignment explanation
Indices: 1249715--1249744 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
1249705 GCTTATCGGG
1249715 TTTCGGGTTT
1 TTTCGGGTTT
1249725 TTTCGGGTTT
1 TTTCGGGTTT
1249735 TTTCGGGTTT
1 TTTCGGGTTT
1249745 CGGGTTTTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.10, G:0.30, T:0.60
Consensus pattern (10 bp):
TTTCGGGTTT
Found at i:1249732 original size:17 final size:16
Alignment explanation
Indices: 1249725--1250010 Score: 164
Period size: 15 Copynumber: 19.4 Consensus size: 16
1249715 TTTCGGGTTT
1249725 TTTCGGGTTTTTTCGGG
1 TTTCGGG-TTTTTCGGG
1249742 TTTCGGG-TTTTCGTGG
1 TTTCGGGTTTTTCG-GG
*
1249758 TTTCGGGTATTTCGGG
1 TTTCGGGTTTTTCGGG
1249774 TTTTCGGG--TTTCGGG
1 -TTTCGGGTTTTTCGGG
1249789 TTTCGGG--TTTCGGG
1 TTTCGGGTTTTTCGGG
*
1249803 TTTC-GG-CTTTCGGG
1 TTTCGGGTTTTTCGGG
*
1249817 TTTCGGG-ATTTCGGG
1 TTTCGGGTTTTTCGGG
* *
1249832 TTCCCGGG--TTGCGGG
1 TT-TCGGGTTTTTCGGG
* *
1249847 TTTAGGG-TTTCCGGG
1 TTTCGGGTTTTTCGGG
*
1249862 GTTCGGG--TTTCGGG
1 TTTCGGGTTTTTCGGG
**
1249876 TTTCGGGTTTAGCGGGG
1 TTTCGGGTTTTTC-GGG
1249893 TTTC-GG--TTTCGGG
1 TTTCGGGTTTTTCGGG
1249906 TTTC-GG--TTTCGGG
1 TTTCGGGTTTTTCGGG
* *
1249919 TTTCGAG--ATTCGGG
1 TTTCGGGTTTTTCGGG
1249933 TGTTC-GG--TTT-GGG
1 T-TTCGGGTTTTTCGGG
*
1249946 TTTCGGG-TTTCCGGG
1 TTTCGGGTTTTTCGGG
*
1249961 TTTCGGG--TTTAGGG
1 TTTCGGGTTTTTCGGG
*
1249975 TTTCGGG-TTTCCGGG
1 TTTCGGGTTTTTCGGG
*
1249990 TTTCGGG-TGTTCGGG
1 TTTCGGGTTTTTCGGG
1250005 TTTCGG
1 TTTCGG
1250011 TATTTCGGAG
Statistics
Matches: 227, Mismatches: 26, Indels: 34
0.79 0.09 0.12
Matches are distributed among these distances:
12 3 0.01
13 28 0.12
14 71 0.31
15 80 0.35
16 19 0.08
17 26 0.11
ACGTcount: A:0.02, C:0.15, G:0.41, T:0.42
Consensus pattern (16 bp):
TTTCGGGTTTTTCGGG
Found at i:1250086 original size:1 final size:1
Alignment explanation
Indices: 1250071--1250632 Score: 242
Period size: 1 Copynumber: 562.0 Consensus size: 1
1250061 CCGCGCGGCT
* * * * * * * * * * * *
1250071 CCCCTCCCCCTCCCCCACTCCCCCTCCCCACCCCACCCTCCCCTCCCCCCCTCCCCCTCCCCCCT
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
** * * * * * * * *
1250136 CCCCCATCCCCCCTCCCCCCTCCCCCCCTCCCCCCTCCCCCCTCCCCCTCCCCCTCCCCCCTCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * * * * * * *
1250201 CCCCCTCCCCCCTCCCCCCGCCCCCCCCCCCCCCTCACCCCTCCCCCTCCACCCTCCCCCCTCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * ** * * * * * * * * * *
1250266 ACCCTCCCCCCCAGCCCCCCCCCCCCTCCCACCTCCTCCCCCTCCCACTCCCCCCTCCGCCCCCT
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * * * * * * ** *
1250331 CCCCCTCCCCCCTCCCCCCTCCCCCCTCCCCCACCCCCTCCCCTCACCTCCCCCCCCTACCACCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * ** * * * * * * * * *
1250396 TCCCCCCCTCCCCCCCTACCCCCCTCACGCCCCCTCCCCCCTCCCCCCTCCCCCCACACCCCTCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * ** * * * * * *
1250461 CCCCCCTCCCCCCGCTCCCCCCCTACCCCCCTCCCCCCCTCCCCCCCTCCCACCCTCCCCCCGCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * * * * * * *
1250526 CCCTCCCCCCCCTCCCCCCTCCCCCCGCCCCCCTCCCCTCCCCACTCCCCCCTCCCCCCTCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * * *
1250591 CTCCCCCCTCCCCCCTCCCCCCGCCCCCTCCCCCTCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1250633 TCACCCGCCA
Statistics
Matches: 370, Mismatches: 191, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
1 370 1.00
ACGTcount: A:0.04, C:0.83, G:0.01, T:0.12
Consensus pattern (1 bp):
C
Found at i:1250093 original size:7 final size:7
Alignment explanation
Indices: 1250071--1251204 Score: 738
Period size: 7 Copynumber: 156.9 Consensus size: 7
1250061 CCGCGCGGCT
1250071 CCCCT-C
1 CCCCTCC
1250077 CCCCTCC
1 CCCCTCC
1250084 CCCACT-C
1 CCC-CTCC
1250091 CCCCTCC
1 CCCCTCC
1250098 CCACC-CC
1 CC-CCTCC
*
1250105 ACCCTCC
1 CCCCTCC
*
1250112 CCTC-CC
1 CCCCTCC
1250118 CCCCT-C
1 CCCCTCC
1250124 CCCCTCC
1 CCCCTCC
1250131 CCCCTCC
1 CCCCTCC
*
1250138 CCCATCC
1 CCCCTCC
1250145 CCCCTCC
1 CCCCTCC
1250152 CCCCTCCC
1 CCCCT-CC
1250160 CCCCTCC
1 CCCCTCC
1250167 CCCCTCC
1 CCCCTCC
1250174 CCCCT-C
1 CCCCTCC
1250180 CCCCT-C
1 CCCCTCC
1250186 CCCCTCC
1 CCCCTCC
1250193 CCCCTCCCC
1 CCCCT--CC
1250202 CCCCTCC
1 CCCCTCC
1250209 CCCCTCC
1 CCCCTCC
*
1250216 CCCCGCCC
1 CCCC-TCC
*
1250224 CCCCCCC
1 CCCCTCC
*
1250231 CCCCTCA
1 CCCCTCC
1250238 CCCCT-C
1 CCCCTCC
1250244 CCCCTCC
1 CCCCTCC
*
1250251 ACCCTCC
1 CCCCTCC
1250258 CCCCTCC
1 CCCCTCC
1250265 CACCCTCC
1 C-CCCTCC
1250273 CCCC-CAGC
1 CCCCTC--C
*
1250281 CCCCCCC
1 CCCCTCC
1250288 CCCCTCC
1 CCCCTCC
*
1250295 CACCTCC
1 CCCCTCC
1250302 TCCCC-CTC
1 -CCCCTC-C
*
1250310 CCACTCC
1 CCCCTCC
1250317 CCCCTCC
1 CCCCTCC
1250324 GCCCC-CTC
1 -CCCCTC-C
1250332 CCCCTCC
1 CCCCTCC
1250339 CCCCTCC
1 CCCCTCC
1250346 CCCCTCC
1 CCCCTCC
1250353 CCCCTCCC
1 CCCCT-CC
*
1250361 CCACCCCC
1 CC-CCTCC
1250369 TCCCCTCAC
1 -CCCCTC-C
*
1250378 CTCC-CC
1 CCCCTCC
1250384 CCCCTACC
1 CCCCT-CC
*
1250392 ACCCTCCC
1 CCCCT-CC
1250400 CCCCTCCC
1 CCCCT-CC
1250408 CCCCTACC
1 CCCCT-CC
1250416 CCCCTCACGC
1 CCCCT--C-C
1250426 CCCCTCC
1 CCCCTCC
1250433 CCCCTCC
1 CCCCTCC
1250440 CCCCTCC
1 CCCCTCC
*
1250447 CCCCACAC
1 CCCCTC-C
*
1250455 CCCTCCCC
1 CCC-CTCC
1250463 CCCCTCCC
1 CCCCT-CC
1250471 CCCGCTCCC
1 CCC-CT-CC
1250480 CCCCTACC
1 CCCCT-CC
1250488 CCCCTCCC
1 CCCCT-CC
1250496 CCCCTCCC
1 CCCCT-CC
1250504 CCCCTCC
1 CCCCTCC
1250511 CACCCTCC
1 C-CCCTCC
*
1250519 CCCCGCC
1 CCCCTCC
*
1250526 CCCTCCCC
1 CCC-CTCC
1250534 CCCCTCC
1 CCCCTCC
1250541 CCCCTCC
1 CCCCTCC
*
1250548 CCCCGCC
1 CCCCTCC
1250555 CCCCT--
1 CCCCTCC
1250560 CCCCTCC
1 CCCCTCC
*
1250567 CCACTCC
1 CCCCTCC
1250574 CCCCTCC
1 CCCCTCC
1250581 CCCCTCC
1 CCCCTCC
1250588 CCCCTCC
1 CCCCTCC
1250595 CCCCTCC
1 CCCCTCC
1250602 CCCCTCC
1 CCCCTCC
*
1250609 CCCC-GC
1 CCCCTCC
1250615 CCCCT-C
1 CCCCTCC
1250621 CCCCTCCC
1 CCCCT-CC
1250629 CCCCTCAC
1 CCCCTC-C
*
1250637 CCGCC-AC
1 CC-CCTCC
*
1250644 CCCGTCC
1 CCCCTCC
*
1250651 ACCCT-C
1 CCCCTCC
1250657 CCCCTACC
1 CCCCT-CC
*
1250665 CTAAACCTCC
1 C---CCCTCC
*
1250675 CCCGC-GC
1 CCC-CTCC
1250682 CCCCT-C
1 CCCCTCC
*
1250688 ACCCTCC
1 CCCCTCC
1250695 CCCCTCC
1 CCCCTCC
*
1250702 CCCC-CT
1 CCCCTCC
*
1250708 CCCCTCA
1 CCCCTCC
1250715 CCCCTCC
1 CCCCTCC
1250722 CCCCTCC
1 CCCCTCC
1250729 CCCCTACC
1 CCCCT-CC
* *
1250737 CCACTCA
1 CCCCTCC
1250744 CCCCTACC
1 CCCCT-CC
1250752 CCCCTCC
1 CCCCTCC
1250759 CCCCTCC
1 CCCCTCC
1250766 CCCCT-C
1 CCCCTCC
* * *
1250772 CACCGCA
1 CCCCTCC
1250779 CCCCTCC
1 CCCCTCC
*
1250786 ACCCT-C
1 CCCCTCC
1250792 CCCCTCAC
1 CCCCTC-C
*
1250800 CCCTTCC
1 CCCCTCC
*
1250807 ACCCCGCC
1 -CCCCTCC
*
1250815 CCCACCCC
1 CCC-CTCC
*
1250823 CCCGCACCC
1 CCC-C-TCC
1250832 CCCCTCCC
1 CCCCT-CC
*
1250840 CCCCTCA
1 CCCCTCC
1250847 CCCCT-C
1 CCCCTCC
*
1250853 CCCCT-A
1 CCCCTCC
1250859 CCCCTACC
1 CCCCT-CC
*
1250867 CCCCGCC
1 CCCCTCC
1250874 CCACC-CAC
1 CC-CCTC-C
*
1250882 CCACCT-A
1 CC-CCTCC
*
1250889 ACCCTCC
1 CCCCTCC
*
1250896 ACCCTCC
1 CCCCTCC
1250903 CCCCTCC
1 CCCCTCC
*
1250910 CCCATCC
1 CCCCTCC
1250917 CCCCT-C
1 CCCCTCC
1250923 CCCCTACC
1 CCCCT-CC
1250931 CCCCTCCCC
1 CCCCT--CC
1250940 CCCCTCC
1 CCCCTCC
*
1250947 ACCCTCAC
1 CCCCTC-C
* *
1250955 CCGC-CA
1 CCCCTCC
*
1250961 ACCCTCC
1 CCCCTCC
1250968 CCGCC-CTC
1 CC-CCTC-C
1250976 CCCCTCC
1 CCCCTCC
* **
1250983 AACCC-GA
1 -CCCCTCC
* *
1250990 CACCTCA
1 CCCCTCC
1250997 CCCCTCAC
1 CCCCTC-C
1251005 CCTAACC-CC
1 CC---CCTCC
1251014 CACCCTCC
1 C-CCCTCC
*
1251022 CCCCTAC
1 CCCCTCC
1251029 CCCCTCC
1 CCCCTCC
*
1251036 CCCCGCC
1 CCCCTCC
**
1251043 CCCC-GA
1 CCCCTCC
*
1251049 ACCCTCC
1 CCCCTCC
*
1251056 ACCCTACCCC
1 -CCC--CTCC
1251066 CCCCTCC
1 CCCCTCC
1251073 CCCCTCC
1 CCCCTCC
1251080 CCCCTCC
1 CCCCTCC
1251087 CCCCTCC
1 CCCCTCC
*
1251094 ACCCCTAC
1 -CCCCTCC
*
1251102 CCACTCC
1 CCCCTCC
1251109 CCCCT-C
1 CCCCTCC
1251115 CCCCTCC
1 CCCCTCC
* *
1251122 AGCCCGCC
1 -CCCCTCC
1251130 CCCCT-C
1 CCCCTCC
1251136 CCCCTCC
1 CCCCTCC
**
1251143 AACCTCC
1 CCCCTCC
1251150 ACCCCTCC
1 -CCCCTCC
*
1251158 CCCCGCC
1 CCCCTCC
*
1251165 ACCCTCC
1 CCCCTCC
1251172 CCCCTCC
1 CCCCTCC
1251179 CCCCTCC
1 CCCCTCC
*
1251186 CCCC-GC
1 CCCCTCC
*
1251192 CCCCGCC
1 CCCCTCC
1251199 CCCCTC
1 CCCCTC
1251205 AACCTAACCC
Statistics
Matches: 905, Mismatches: 128, Indels: 189
0.74 0.10 0.15
Matches are distributed among these distances:
5 5 0.01
6 122 0.13
7 481 0.53
8 233 0.26
9 45 0.05
10 14 0.02
11 5 0.01
ACGTcount: A:0.07, C:0.79, G:0.02, T:0.12
Consensus pattern (7 bp):
CCCCTCC
Found at i:1250347 original size:101 final size:96
Alignment explanation
Indices: 1250072--1251204 Score: 574
Period size: 96 Copynumber: 11.4 Consensus size: 96
1250062 CGCGCGGCTC
* * * *
1250072 CCCT-CCCCCTCCCCCACTCCCCCTCCCCACC-CCACCCTCCCCTCCC-CCCCT-CCCCCT-CCC
1 CCCTCCCCCCTCCCCCCCACCCCC-CCCCCCCTCCCCCCTCCCC-CCCTCCCCTCCCCCCTCCCC
1250132 CCCTCCCCCATCCCCCCTCCCCCCTCCCCCCCTCCC
64 CCCTCCCCC-TCCCCCCT-CCCCCT-CCCCCCTCCC
* *
1250168 CCCTCCCCCCTCCCCCTCC-CCCTCCCCCCTCC-CCCCCCT-CCCCCCT-CCC-CCCGCC-CCCC
1 CCCTCCCCCCTCCCCC-CCACCC-CCCCCCCCCTCCCCCCTCCCCCCCTCCCCTCCCCCCTCCCC
*
1250227 CCC-CCCCCTCACCCCTC-CCC-CTCCACCCTCCC
64 CCCTCCCCCTC-CCCC-CTCCCCCTCCCCCCTCCC
*
1250259 CCCTCCCACCCTCCCCCCCAGCCCCCCCCCCCCTCCCACCTCCTCCCCCTCCCACTCCCCCCTCC
1 CCCTCCC-CCCTCCCCCCCA-CCCCCCCCCCCCTCCCCCCTCC-CCCCCTCCC-CTCCCCCCTCC
1250324 GCCCCCTCCCCCTCCCCCCTCCCCCCTCCCCCCT-CC
62 -CCCCCTCCCCCTCCCCCCT-CCCCCTCCCCCCTCCC
* * * *
1250360 CCC-ACCCCCT-CCCCTCA-CCTCCCCCCCCTACCACCCTCCCCCCCTCCCC-CCCTACCC-CCC
1 CCCTCCCCCCTCCCCCCCACCCCCCCCCCCCT-CCCCCCTCCCCCCCTCCCCTCCC--CCCTCCC
* * * * *
1250420 TCACGCCCCCTCCCCCCTCCCCCCTCCCCCCACAC
63 CCCCTCCCCCTCCCCCCT-CCCCCTCCCCCCTCCC
* * * *
1250455 CCCTCCCCCC-CCTCCCC-CCGCTCCCCCCCTACCCCCCTCCCCCCCTCCCC-CCCTCCCACCCT
1 CCCTCCCCCCTCCCCCCCACCCCCCCCCCCCT-CCCCCCTCCCCCCCTCCCCTCCC-CCCTCCC-
*
1250517 CCCC-CCGCCC-CCTCCC-CCCCCTCCCCCCTCCC
63 CCCCTCC-CCCTCCCCCCTCCCCCTCCCCCCTCCC
*
1250549 CCCGCCCCCCTCCCCTCCCCACTCCCCCCTCCCCCCTCCCCCCT-CCCCCCTCCCC-CCTCCCC-
1 CCCTCCCCCCT-CCC-CCCCA--CCCCCC-CCCCCCTCCCCCCTCCCCCCCTCCCCTCC-CCCCT
* * *
1250611 CCGCCCCCTCCCCCTCCCCCCCTCACCCGCCACCCCGTCCA
60 CC-CCCCCTCCCCCT-CCCCCCTCCCCCTCC-CCCC-TCCC
* *
1250652 CCCT-CCCCCTACCCTAAACCTCCCCCGCGCCCCCTCACCCTCCCCCCTCCCCCCCTCCCCTCAC
1 CCCTCCCCCCT-CCC----CC-CCACC-C-CCCCC-C-CCCTCCCCCCTCCCCCCCTCCCCTCCC
*
1250716 CCCT-CCCCCCTCCCCCCTACCCCACTCACCCCTACCCCCCTCCC
56 CCCTCCCCCCCT-CCCCCT-CCCCCCTC-CCCCT-CCCCCCTCCC
* * * * * * *
1250760 CCCTCCCCCCTCCACCGCA-CCCCTCCACCCT-CCCCCTCACCCCTTCCACCCCGCCCCCACCCC
1 CCCTCCCCCCTCCCCCCCACCCCCCCCCCCCTCCCCCCTC-CCCC--CCTCCCCTCCCCC-CTCC
* *
1250823 CCCGCACCCCCCCTCCCCCCCTCACCCCT-CCCCCT-AC
62 CCC-C-CTCCCCCT-CCCCCCTC-CCCCTCCCCCCTCCC
* * *** *
1250860 CCCTACCCCCCGCCCCACCCACCCACCTAACCCTCCACCCT-CCCCCCTCCCCCATCCCCCCTCC
1 CCCT-CCCCCCTCCCC-CCCACCCCCCCCCCCCTCCCCCCTCCCCCCCT-CCCC-TCCCCCCTCC
* *
1250924 CCCTACC-CCCCTCCCCCCCCTCCACCCTCACCCGCCAACCC
62 CCC--CCTCCCC-CTCCCCCCTCC-CCCTC-CCC-CC-TCCC
* * * * ** *
1250965 TCC-CCGCCCTCCCCCTCCAACCCGACACCTCACCCCT-CACCCTAACCCCC-ACCCTCCCCCCT
1 CCCTCCCCCCTCCCCC-CC-ACCC--C-CC-CCCCCCTCCCCCCTCCCCCCCTCCCCTCCCCCCT
* * *** *
1251027 -ACCCCCTCCCCCCGCCCCCCGAACCCTCCACCCTACCCCC
60 CCCCCCCT-CCCCCTCCCCCCTCCCCCTCC-CCC--CTCCC
* * * * *
1251067 CCCTCCCCCCTCCCCCCTC-CCCCCTCCACCCCTACCCACT-CCCCCCTCCCCCTCCAGCCC-GC
1 CCCTCCCCCCTCCCCCC-CACCCCC-CCCCCCCTCCCCCCTCCCCCCCT-CCCCTCC-CCCCTCC
** * *
1251129 CCCCCTCCCCCTCCAACCTCCACCCCTCCCCCCGCCA
62 CCCCCTCCCCCTCCCCCCT-C-CCCCTCCCCCCTCCC
* * *
1251166 CCCTCCCCCCT-CCCCCCTCCCCCCGCCCCCGCCCCCCTC
1 CCCTCCCCCCTCCCCCCCACCCCCCCCCCCCTCCCCCCTC
1251205 AACCTAACCC
Statistics
Matches: 816, Mismatches: 113, Indels: 214
0.71 0.10 0.19
Matches are distributed among these distances:
91 18 0.02
92 19 0.02
93 14 0.02
94 65 0.08
95 33 0.04
96 84 0.10
97 61 0.07
98 54 0.07
99 47 0.06
100 80 0.10
101 74 0.09
102 64 0.08
103 68 0.08
104 21 0.03
105 16 0.02
106 9 0.01
107 25 0.03
108 48 0.06
109 14 0.02
110 2 0.00
ACGTcount: A:0.07, C:0.79, G:0.02, T:0.12
Consensus pattern (96 bp):
CCCTCCCCCCTCCCCCCCACCCCCCCCCCCCTCCCCCCTCCCCCCCTCCCCTCCCCCCTCCCCCC
CTCCCCCTCCCCCCTCCCCCTCCCCCCTCCC
Found at i:1250879 original size:18 final size:18
Alignment explanation
Indices: 1250071--1250879 Score: 180
Period size: 18 Copynumber: 43.8 Consensus size: 18
1250061 CCGCGCGGCT
* *
1250071 CCCCTCCCCCTCCCC-CA
1 CCCCCCCCCCACCCCTCA
1250088 CTCCCCCTCCCCA-CCC-CA
1 C-CCCCC-CCCCACCCCTCA
1250106 CCCTCCCCTCCC-CCCCTC-
1 CCC-CCCC-CCCACCCCTCA
*
1250124 CCCCTCCCCCCTCCCC-CA
1 CCCC-CCCCCCACCCCTCA
* *
1250142 TCCCCCCTCC-CCCCT--
1 CCCCCCCCCCACCCCTCA
*
1250157 CCCCCCCTCC-CCCCTC-
1 CCCCCCCCCCACCCCTCA
*
1250173 CCCCCTCCCCCTCCCCCTC-
1 CCCCC-CCCCC-ACCCCTCA
* *
1250192 CCCCCTCCCC-CCCCTCC
1 CCCCCCCCCCACCCCTCA
*
1250209 CCCCTCCCCCCGCCCC-C-
1 CCCC-CCCCCCACCCCTCA
1250226 CCCCCCCCCTCACCCCTC-
1 CCCCCCCCC-CACCCCTCA
*
1250244 CCCCTCCACCCTCCCCCCTCCCA
1 CCCC-CC-CCC-CACCCCT--CA
1250267 CCCTCCCCCCCAGCCCC-C-
1 CCC-CCCCCCCA-CCCCTCA
1250285 CCCCCCCTCCCACCTCCTC-
1 CCCCCCC-CCCACC-CCTCA
* * * * *
1250304 CCCCTCCCACTCCCCCCT
1 CCCCCCCCCCACCCCTCA
* * *
1250322 CCGCCCCCTC-CCCCTCC
1 CCCCCCCCCCACCCCTCA
* * *
1250339 CCCCTCCCCCCTCCCCCCT
1 CCCC-CCCCCCACCCCTCA
*
1250358 CCCCCACCCCCTCCCCTCA
1 CCCCC-CCCCCACCCCTCA
1250377 CCTCCCCCCCCTACCACCCTC-
1 CC-CCCCCCCC-A-C-CCCTCA
*
1250398 CCCCCCTCCC-CCCCT-A
1 CCCCCCCCCCACCCCTCA
* *
1250414 CCCCCCTCACGC-CCCCTCC
1 CCCCCC-C-CCCACCCCTCA
* *
1250433 CCCCTCCCCCCTCCCCCCA
1 CCCC-CCCCCCACCCCTCA
*
1250452 CACCCCTCCCC-CCCCTC-
1 C-CCCCCCCCCACCCCTCA
*
1250469 CCCCCGCTCCC-CCCCT-A
1 CCCCC-CCCCCACCCCTCA
*
1250486 CCCCCCTCCC-CCCCTC-
1 CCCCCCCCCCACCCCTCA
*
1250502 CCCCCCTCCCA-CCCTC-
1 CCCCCCCCCCACCCCTCA
*
1250518 CCCCCGCCCCCTCCCC-C-
1 CCCCC-CCCCCACCCCTCA
* * * *
1250535 CCCTCCCCCCTCCCCCCG
1 CCCCCCCCCCACCCCTCA
*
1250553 CCCCCCTCCCC-TCCC-CA
1 CCCCCC-CCCCACCCCTCA
* *
1250570 CTCCCCCCTCC-CCCCTCCC
1 C-CCCCCCCCCACCCCT-CA
*
1250589 CCCTCCCCCCTCCCCCCTC-
1 CCC-CCCCCC-CACCCCTCA
* *
1250608 CCCCCGCCCCCTCCCCCTCCC
1 CCCCC-CCCCC-ACCCCT-CA
1250629 CCCCTCACCCGCCACCCCGTCCA
1 CCCC-C-CCC-CCACCCC-T-CA
* * *
1250652 CCCTCCCCCTA-CCCTAAA
1 CCCCCCCCCCACCCCT-CA
*
1250670 CCTCCCCCGCGC-CCCCTCA
1 CC-CCCCC-CCCACCCCTCA
* *
1250689 CCCTCCCCCC-TCCC-C-
1 CCCCCCCCCCACCCCTCA
* * *
1250704 CCCTCCCCTCACCCCTCC
1 CCCCCCCCCCACCCCTCA
1250722 CCCCTCCCCCCTACCCCACTCA
1 CCCC-CCCCCC-A-CCC-CTCA
*
1250744 CCCCTACCCCCCTCCCCCCTC-
1 -CCC--CCCCCC-CACCCCTCA
1250765 CCCCCTCCACCGCACCCCTCCA
1 CCCCC-CC-CC-CACCCCT-CA
*
1250787 CCCTCCCCCTCACCCCTTCCA
1 CCC-CCCCCCCACCCC-T-CA
* *
1250808 CCCCGCCCCCACCCCCCCGCA
1 -CCC-CCCCC-CCACCCCTCA
1250829 CCCCCCCTCCC-CCCCTCA
1 CCCCCCC-CCCACCCCTCA
*
1250847 CCCCTCCCCCTACCCCT-A
1 CCCC-CCCCCCACCCCTCA
1250865 CCCCCCGCCCCACCC
1 CCCCCC-CCCCACCC
1250880 ACCCACCTAA
Statistics
Matches: 622, Mismatches: 78, Indels: 183
0.70 0.09 0.21
Matches are distributed among these distances:
15 23 0.04
16 78 0.13
17 89 0.14
18 145 0.23
19 128 0.21
20 57 0.09
21 27 0.04
22 41 0.07
23 26 0.04
24 6 0.01
25 2 0.00
ACGTcount: A:0.06, C:0.80, G:0.02, T:0.12
Consensus pattern (18 bp):
CCCCCCCCCCACCCCTCA
Found at i:1251001 original size:144 final size:137
Alignment explanation
Indices: 1250753--1251014 Score: 289
Period size: 144 Copynumber: 1.9 Consensus size: 137
1250743 ACCCCTACCC
* * *
1250753 CCCTCCCCCCTCCCCCCTCCACCGCACCCCTCCACCCTCCCCCTCACCCCTTCCACCCCGCCCCC
1 CCCTCCACCCTCCCCCCTCCACCGCACCCCTCCACCCTCCCCCTCACCCCCTCCACCCCACCCCC
** * *
1250818 ACCCCCCCGCACCCCCCCTCCCCCCCTCACCCCTCCCCCT-ACCCCTACCCCCCGCCCCACCCAC
66 ACCCCCCCGCACCCCCCCTCCAACCCTCACACCTCCCCCTCA-CCCTAACCCCCGCCCCACCCAC
1250882 CCACCTAA
130 CCACCTAA
* * * *
1250890 CCCTCCACCCTCCCCCCTCCCCCATCCCCCCTCC-CCCTACCCCCCTCCCCCCCCTCCACCCTCA
1 CCCTCCACCCTCCCCCCTCCACC-GCACCCCTCCACCCT--CCCCCT-CACCCCCTCCACCC-CA
*
1250954 CCCGCCAACCCTCCCCGC-CCTCCCCCTCCAACCC-GACACCTCACCCCTCACCCTAACCCCC
61 CCC-CC-ACCC-CCCCGCACC-CCCCCTCCAACCCTCACACCTC-CCCCTCACCCTAACCCCC
1251015 ACCCTCCCCC
Statistics
Matches: 102, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
137 25 0.25
138 8 0.08
139 6 0.06
140 12 0.12
141 4 0.04
142 2 0.02
143 12 0.12
144 32 0.31
145 1 0.01
ACGTcount: A:0.11, C:0.75, G:0.03, T:0.11
Consensus pattern (137 bp):
CCCTCCACCCTCCCCCCTCCACCGCACCCCTCCACCCTCCCCCTCACCCCCTCCACCCCACCCCC
ACCCCCCCGCACCCCCCCTCCAACCCTCACACCTCCCCCTCACCCTAACCCCCGCCCCACCCACC
CACCTAA
Found at i:1251111 original size:577 final size:561
Alignment explanation
Indices: 1250117--1251201 Score: 1259
Period size: 564 Copynumber: 1.9 Consensus size: 561
1250107 CCTCCCCTCC
* * *
1250117 CCCCCTCCCCCTCCCCCCTCCCCCATCCCCCCTCCCCCCTCCCCCCCTCCCCCCTCCCCCCTCCC
1 CCCCCTCACCCTCCCCCCTCCCCCA-CCCCCCTCACCCCTCCCCCCCTCCCCCCTCCCCACTCCC
* *
1250182 CCTCCCCCTCCCCCCTCCCCCCCCTCCCCCCTCCCCCCGCCCCCCCCCCCCCCTCACCCCTCCCC
65 CCTCCCCCTCCCCCCT-CCCCCCCTCCCCCCACCCCCCACCCCCCCCCCCCCCTCACCCCTCCCC
* * *
1250247 CTCCACCCTCCCCCCTCCCACCCTCCCCCCCAGCCCCCCCCCCCCTCCCACCTCCTCCCCCTCCC
129 CTCCACCCTCCCCCCACCCACCCTCCCCCCCAGCACCCCCCCCCCTACCACCTCCTCCCCCTCCC
* * * *
1250312 ACTCCCCCCTCCGCCCCCTCCCCCTCCCCCCTCCCCCCTCCCCCCTCCCCCACCCCCTCCCCTCA
194 ACCCCCCCCTACGCCCCC-ACCCCTCCCCCCTCCCCCATCCCCCCTCCCCCACCCCCTCCCCTCA
* * * *
1250377 CCTCCCCCCCCTACCACCCTCCCCCCCTCCCCCCCTACCCCCCTCACGCCCCCTCCCCCCTCCCC
258 CCTCCCCCCCCCACCACCCTCCCCCCCTCCCCCCCAACCCCCCTCACGCCCCCACCCCCCTCCAC
* *
1250442 CCTCCCCCCACACCCCTCCCCCCCCTCCCCCCGCTCCCCCCCTACCCCCCTCCCCCCCTCCCCCC
323 CCTCCCCCCACACCCCTCCCCCCCCTCCCCCCGCTCCCACCCTACCCCCCCCCCCCCCTCCCCCC
* * *
1250507 CTCCCACCCTCCCCCCGCCCCCTCCCCCCCCTCCCCCCTCC-CCCCGCCCCCCT-CCCCTCC-CC
388 CTCCCACCCTCCCCCCACCCACT--CCCCCCT-CCCCCTCCACCCCGCCCCCCTCCCCCTCCAAC
* * *
1250569 ACTCC-CCCCTCCCCCCTCCCCCCTCCCCCCTCCCCCCTCCCCCCGCCCCCTCCCCCTCCCCCCC
450 -CTCCACCCCTCCCCCCGCCACCCTCCCCCCTCCCCCCTCCCCCCGCCCCCGCCCCCTCCCCCCC
1250633 TCACCCGCCACCCCGTCCACCCTCCCCCTACCCTAAACCTCCCCCGCG
514 TCACCCGCCACCCCGTCCACCCTCCCCCTACCCTAAACCTCCCCCGCG
1250681 CCCCCTCACCCTCCCCCCTCCCCC-CCTCCCCTCACCCCT-CCCCCCTCCCCCCTACCCCACTCA
1 CCCCCTCACCCTCCCCCCTCCCCCACC-CCCCTCACCCCTCCCCCCCTCCCCCCT-CCCCACTC-
* *
1250744 CCCCTACCCCCCTCCCCCCT-CCCCCCTCCACCGCACCCCTCCACCCTCCCCCTCACCCCTTC-C
63 CCCCT--CCCCCTCCCCCCTCCCCCCCTCC-CCCCACCCC-CCACCC-CCCCC-C-CCCCCTCAC
* * * * *
1250807 ACCC-CGCCC-CCACCC-CCCCGCACCCCCCCTCCCCCCC-TCACCCCTCCCCCTACC-CCTACC
121 -CCCTCCCCCTCCACCCTCCCCCCACCCACCCTCCCCCCCAGCACCCCCCCCCCTACCACCT-CC
*
1250867 -CCCCGC-CCCACCCACCCACCTAAC-CCTCCA-CCCTCCCCCCTCCCCCATCCCCCCTCCCCCT
184 TCCCC-CTCCCACCC-CCC-CCT-ACGCCCCCACCCCTCCCCCCTCCCCCATCCCCCCTCCCCC-
* *
1250928 ACCCCCCTCCCC-CCCCTCCACCCTCACCCGCCAACCCTCCCCGCCCTCCCCCTCCAACCCGACA
244 A-CCCCCTCCCCTCACCTCC-CCC-C-CCCACC-ACCCTCCCC-CCCTCCCCC-CCAACCC--C-
*
1250992 CCTCAC-CCCTCACCCTAACCC-CCACCCTCCCCCCTAC-CCCCTCCCCCCGCC-CCCCGAACC-
299 CCTCACGCCCCCACCC---CCCTCCACCCTCCCCCC-ACACCCCTCCCCCC-CCTCCCC---CCG
1251052 CT-CCACCCTACCCCCCCCTCCCCCCT-CCCCCCTCCC-CCCTCCACCCCTACCCACTCCCCCCT
356 CTCCCACCCTACCCCCCCC-CCCCCCTCCCCCCCTCCCACCCTCC-CCCC-ACCCACTCCCCCCT
*
1251114 CCCCCTCCAGCCCGCCCCCCTCCCCCTCCAACCTCCACCCCTCCCCCCGCCACCCTCCCCCCTCC
418 CCCCCTCCACCCCGCCCCCCTCCCCCTCCAACCTCCACCCCTCCCCCCGCCACCCTCCCCCCTCC
1251179 CCCCTCCCCCCGCCCCCGCCCCC
483 CCCCTCCCCCCGCCCCCGCCCCC
1251202 CTCAACCTAA
Statistics
Matches: 443, Mismatches: 36, Indels: 71
0.81 0.07 0.13
Matches are distributed among these distances:
562 16 0.04
563 18 0.04
564 79 0.18
565 33 0.07
566 57 0.13
567 13 0.03
568 10 0.02
569 18 0.04
570 9 0.02
571 6 0.01
573 8 0.02
574 14 0.03
575 51 0.12
576 46 0.10
577 63 0.14
578 2 0.00
ACGTcount: A:0.07, C:0.79, G:0.02, T:0.12
Consensus pattern (561 bp):
CCCCCTCACCCTCCCCCCTCCCCCACCCCCCTCACCCCTCCCCCCCTCCCCCCTCCCCACTCCCC
CTCCCCCTCCCCCCTCCCCCCCTCCCCCCACCCCCCACCCCCCCCCCCCCCTCACCCCTCCCCCT
CCACCCTCCCCCCACCCACCCTCCCCCCCAGCACCCCCCCCCCTACCACCTCCTCCCCCTCCCAC
CCCCCCCTACGCCCCCACCCCTCCCCCCTCCCCCATCCCCCCTCCCCCACCCCCTCCCCTCACCT
CCCCCCCCCACCACCCTCCCCCCCTCCCCCCCAACCCCCCTCACGCCCCCACCCCCCTCCACCCT
CCCCCCACACCCCTCCCCCCCCTCCCCCCGCTCCCACCCTACCCCCCCCCCCCCCTCCCCCCCTC
CCACCCTCCCCCCACCCACTCCCCCCTCCCCCTCCACCCCGCCCCCCTCCCCCTCCAACCTCCAC
CCCTCCCCCCGCCACCCTCCCCCCTCCCCCCTCCCCCCGCCCCCGCCCCCTCCCCCCCTCACCCG
CCACCCCGTCCACCCTCCCCCTACCCTAAACCTCCCCCGCG
Found at i:1251254 original size:25 final size:25
Alignment explanation
Indices: 1251207--1251254 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
1251197 CCCCCCTCAA
*
1251207 CCTAACCCGAAACCCGAACCCGACC
1 CCTAACCCGAAACCCGAAACCGACC
*
1251232 CCTAA-CCTAAACCCGAAAACCGA
1 CCTAACCCGAAACCCG-AAACCGA
1251255 AAACCCCTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.38, C:0.46, G:0.10, T:0.06
Consensus pattern (25 bp):
CCTAACCCGAAACCCGAAACCGACC
Found at i:1251353 original size:8 final size:7
Alignment explanation
Indices: 1251273--1256283 Score: 2102
Period size: 7 Copynumber: 718.4 Consensus size: 7
1251263 ACCCACTACC
1251273 CCCTAAA
1 CCCTAAA
*
1251280 CCCTACA
1 CCCTAAA
1251287 CCCT-AA
1 CCCTAAA
1251293 CCCTACAA
1 CCCTA-AA
1251301 CCC-ACCAA
1 CCCTA--AA
1251309 CCCTAAA
1 CCCTAAA
1251316 CCCTAAA
1 CCCTAAA
1251323 CCGC--AA
1 CC-CTAAA
1251329 CCCTAAA
1 CCCTAAA
1251336 CCCTAAA
1 CCCTAAA
1251343 CCCTAAAA
1 CCCT-AAA
* *
1251351 CCC-GAC
1 CCCTAAA
*
1251357 CCCGAAA
1 CCCTAAA
1251364 CCCTAAA
1 CCCTAAA
1251371 CCCTAAA
1 CCCTAAA
1251378 CCCCTAAA
1 -CCCTAAA
1251386 --C-AAA
1 CCCTAAA
*
1251390 CCCGAAA
1 CCCTAAA
*
1251397 CCCGAAA
1 CCCTAAA
*
1251404 CCC-GAA
1 CCCTAAA
1251410 CCCTAAA
1 CCCTAAA
*
1251417 CCCCT-AC
1 -CCCTAAA
*
1251424 CCCGAAA
1 CCCTAAA
1251431 CCCTAAA
1 CCCTAAA
**
1251438 CCCGCAA
1 CCCTAAA
1251445 CCCTAAA
1 CCCTAAA
*
1251452 CCCTAAC
1 CCCTAAA
*
1251459 CCCTAAC
1 CCCTAAA
1251466 CCCTAAAACA
1 CCCT--AA-A
1251476 CCCTAAA
1 CCCTAAA
1251483 CCCTAACA
1 CCCTAA-A
* *
1251491 CCCGACA
1 CCCTAAA
*
1251498 CCCTCAA
1 CCCTAAA
**
1251505 CCCTCCA
1 CCCTAAA
1251512 CCCTAAA
1 CCCTAAA
1251519 CCCGTAAA
1 CCC-TAAA
1251527 CCCTAAA
1 CCCTAAA
*
1251534 CCCTACAC
1 CCCTA-AA
1251542 CCCT-AA
1 CCCTAAA
*
1251548 CCCGAAA
1 CCCTAAA
*
1251555 CCCGAAA
1 CCCTAAA
**
1251562 CCCCGAA
1 CCCTAAA
1251569 CCCTAAA
1 CCCTAAA
1251576 CCCTAAA
1 CCCTAAA
1251583 CCCTAAA
1 CCCTAAA
1251590 CCCTAAA
1 CCCTAAA
*
1251597 CCCCGAAA
1 -CCCTAAA
1251605 CCCTAAA
1 CCCTAAA
1251612 CCCTAAA
1 CCCTAAA
1251619 CCCT-AA
1 CCCTAAA
*
1251625 CCCTAAC
1 CCCTAAA
1251632 CCCTAAAACA
1 CCCT--AA-A
***
1251642 CCCGCCA
1 CCCTAAA
*
1251649 CCC-GAA
1 CCCTAAA
1251655 CCCTAACA
1 CCCTAA-A
**
1251663 CCCGCAA
1 CCCTAAA
* *
1251670 -CCTCAC
1 CCCTAAA
**
1251676 CCCTCCA
1 CCCTAAA
*
1251683 CCCTAAC
1 CCCTAAA
**
1251690 CCCTACC
1 CCCTAAA
* *
1251697 CCCGACA
1 CCCTAAA
* *
1251704 CCAT-AC
1 CCCTAAA
*
1251710 CCCGAAA
1 CCCTAAA
*
1251717 CCCTACCA
1 CCCTA-AA
1251725 CCCTAAAAA
1 CCCT--AAA
*
1251734 CCCTAAC
1 CCCTAAA
*
1251741 CCCTACA
1 CCCTAAA
*
1251748 CCCTACA
1 CCCTAAA
*
1251755 CCCTCAA
1 CCCTAAA
*
1251762 CCCCAAA
1 CCCTAAA
*
1251769 CCCGAAA
1 CCCTAAA
1251776 CCCTAAA
1 CCCTAAA
*
1251783 CCCGAAA
1 CCCTAAA
1251790 CCCTAAA
1 CCCTAAA
*
1251797 CCC-GAA
1 CCCTAAA
*
1251803 CACCGAAA
1 C-CCTAAA
1251811 CCCT-AA
1 CCCTAAA
* *
1251817 CCCGACA
1 CCCTAAA
1251824 CCCTAAAAA
1 CCCT--AAA
*
1251833 CCCGAAA
1 CCCTAAA
*
1251840 CCCGCAAACA
1 -CC-CTAA-A
1251850 CCCT-AA
1 CCCTAAA
*
1251856 CCCGCAAA
1 CCC-TAAA
* *
1251864 -CCGAACC
1 CCCTAA-A
*
1251871 CCCGAAA
1 CCCTAAA
*
1251878 -CCGAAA
1 CCCTAAA
*
1251884 CCCTAAC
1 CCCTAAA
*
1251891 CCCTCAA
1 CCCTAAA
*
1251898 CCC-GAA
1 CCCTAAA
*
1251904 CCCGAAA
1 CCCTAAA
*
1251911 CCCTACA
1 CCCTAAA
1251918 CCCT-AA
1 CCCTAAA
*
1251924 CCCGACAA
1 CCCTA-AA
*
1251932 CCCGAAA
1 CCCTAAA
1251939 CCCTAAA
1 CCCTAAA
*
1251946 CCCCTAAC
1 -CCCTAAA
1251954 CCCT-AA
1 CCCTAAA
1251960 CCCTACAA
1 CCCTA-AA
*
1251968 -CC-GAA
1 CCCTAAA
1251973 CCCTAAA
1 CCCTAAA
*
1251980 CCCGAAA
1 CCCTAAA
1251987 -CCTAAA
1 CCCTAAA
1251993 CCCT-AA
1 CCCTAAA
*
1251999 CCCTAAC
1 CCCTAAA
1252006 CCCT-AA
1 CCCTAAA
1252012 CCCATAAAA
1 CCC-T-AAA
1252021 CCCTAAA
1 CCCTAAA
*
1252028 CCC---C
1 CCCTAAA
*
1252032 CCCTAAC
1 CCCTAAA
1252039 CCCTAAA
1 CCCTAAA
1252046 CCCTAAA
1 CCCTAAA
*
1252053 CCCTCAA
1 CCCTAAA
*
1252060 CCCTAAC
1 CCCTAAA
1252067 CCCTAAA
1 CCCTAAA
*
1252074 CCCGAAA
1 CCCTAAA
* *
1252081 CCCGAAC
1 CCCTAAA
*
1252088 CCACTCAA
1 CC-CTAAA
1252096 CCCTAAA
1 CCCTAAA
***
1252103 CCAGCAA
1 CCCTAAA
1252110 CCCTAAA
1 CCCTAAA
**
1252117 CCCTCCA
1 CCCTAAA
*
1252124 CCCGAAA
1 CCCTAAA
1252131 CCCTAAA
1 CCCTAAA
1252138 -CCTCAAA
1 CCCT-AAA
1252145 -CCTAAAA
1 CCCT-AAA
1252152 CCCTAAA
1 CCCTAAA
*
1252159 CCCGAAA
1 CCCTAAA
*
1252166 CCCCCGAAAAA
1 --CCC--TAAA
*
1252177 CCCTAAC
1 CCCTAAA
1252184 CCCTAAA
1 CCCTAAA
*
1252191 CCCTCAA
1 CCCTAAA
1252198 CCCTAAA
1 CCCTAAA
*
1252205 CCCT-AC
1 CCCTAAA
*
1252211 CCCGAAA
1 CCCTAAA
*
1252218 CCATAAA
1 CCCTAAA
1252225 -CCTAAA
1 CCCTAAA
1252231 CCCTAAA
1 CCCTAAA
1252238 CCCTAAA
1 CCCTAAA
**
1252245 CCCGCAA
1 CCCTAAA
1252252 CCCTAAA
1 CCCTAAA
1252259 CCCCTAAA
1 -CCCTAAA
* *
1252267 -CCGACA
1 CCCTAAA
1252273 CCCTAAAAA
1 CCCT--AAA
*
1252282 CCCGAAA
1 CCCTAAA
1252289 CCCTAAA
1 CCCTAAA
*
1252296 CCCTAAC
1 CCCTAAA
1252303 CCCTAAA
1 CCCTAAA
*
1252310 CCCTACCA
1 CCCTA-AA
1252318 CCCTAAA
1 CCCTAAA
1252325 CCCTAAA
1 CCCTAAA
*
1252332 CCCGTCAA
1 CCC-TAAA
**
1252340 CCCTCCA
1 CCCTAAA
*
1252347 CCCGAAA
1 CCCTAAA
*
1252354 CCCGAAA
1 CCCTAAA
1252361 CCGC--AA
1 CC-CTAAA
*
1252367 CCCGAAA
1 CCCTAAA
1252374 CCCTAAAA
1 CCCT-AAA
**
1252382 CCCCGAA
1 CCCTAAA
*
1252389 CCC-GAA
1 CCCTAAA
* *
1252395 CCCGACA
1 CCCTAAA
1252402 -CCTAAA
1 CCCTAAA
*
1252408 ACCTAAA
1 CCCTAAA
1252415 CCCT-AA
1 CCCTAAA
1252421 CCCTAAA
1 CCCTAAA
1252428 CCCTAAA
1 CCCTAAA
1252435 CCCTAAA
1 CCCTAAA
**
1252442 CCCGCAA
1 CCCTAAA
1252449 CCCTAAA
1 CCCTAAA
*
1252456 CCCTACA
1 CCCTAAA
1252463 CCCTAAA
1 CCCTAAA
* *
1252470 CCGC-CAC
1 CC-CTAAA
*
1252477 CCCGAAA
1 CCCTAAA
*
1252484 CCCTACA
1 CCCTAAA
1252491 CCCT-AA
1 CCCTAAA
1252497 CCCTAAA
1 CCCTAAA
1252504 CCCT-AA
1 CCCTAAA
*
1252510 CCC-GAA
1 CCCTAAA
**
1252516 CCCCGAA
1 CCCTAAA
1252523 -CCT-AA
1 CCCTAAA
1252528 CCCT-AA
1 CCCTAAA
*
1252534 CCCTAAC
1 CCCTAAA
*
1252541 CCCGAAA
1 CCCTAAA
* *
1252548 CCCGAAC
1 CCCTAAA
*
1252555 CCCGAAAA
1 CCC-TAAA
*
1252563 CCACGAAA
1 CC-CTAAA
1252571 CCCTAAA
1 CCCTAAA
1252578 CCCTAAA
1 CCCTAAA
1252585 CCCTAAA
1 CCCTAAA
*
1252592 CCCGAAA
1 CCCTAAA
*
1252599 CCC-GAA
1 CCCTAAA
*
1252605 CCCGAAA
1 CCCTAAA
1252612 CCCTAAA
1 CCCTAAA
1252619 CCCT--A
1 CCCTAAA
*
1252624 CCC-GAA
1 CCCTAAA
*
1252630 CACTAAAA
1 CCCT-AAA
*
1252638 CCCCGAAAA
1 -CCC-TAAA
1252647 CCCTAAA
1 CCCTAAA
*
1252654 CCC--AC
1 CCCTAAA
*
1252659 CCCTCAA
1 CCCTAAA
*
1252666 CCCGAAAA
1 CCC-TAAA
1252674 CCCT-AA
1 CCCTAAA
1252680 CGCCTAAA
1 C-CCTAAA
1252688 CCCTAAAAA
1 CCCT--AAA
*
1252697 CCCCT-CA
1 -CCCTAAA
**
1252704 CCCGCAA
1 CCCTAAA
1252711 CCCTAAA
1 CCCTAAA
1252718 -CCTAACA
1 CCCTAA-A
1252725 CCCTAAA
1 CCCTAAA
1252732 CCCCTAAA
1 -CCCTAAA
**
1252740 CCC-GCA
1 CCCTAAA
1252746 CCCT-AA
1 CCCTAAA
*
1252752 -CCGAAA
1 CCCTAAA
1252758 CCCCTAAA
1 -CCCTAAA
*
1252766 CCCGAAA
1 CCCTAAA
1252773 CCCTAAA
1 CCCTAAA
* *
1252780 CCCGAAC
1 CCCTAAA
*
1252787 CCCGAAA
1 CCCTAAA
* *
1252794 CAC-GAA
1 CCCTAAA
*
1252800 CACT-AA
1 CCCTAAA
*
1252806 CCC-GAA
1 CCCTAAA
*
1252812 CCCGAAA
1 CCCTAAA
1252819 CCCTAAA
1 CCCTAAA
1252826 CCCT-AA
1 CCCTAAA
*
1252832 CCCGAAA
1 CCCTAAA
*
1252839 ACCTAAA
1 CCCTAAA
1252846 CCCTAAA
1 CCCTAAA
*
1252853 CCCTAAC
1 CCCTAAA
*
1252860 CCGCAAAA
1 CC-CTAAA
*
1252868 CCCTCAA
1 CCCTAAA
1252875 -CC--AA
1 CCCTAAA
*
1252879 CCCGAAA
1 CCCTAAA
1252886 CCCTAAA
1 CCCTAAA
*
1252893 -CCGAAA
1 CCCTAAA
*
1252899 CCGTAAA
1 CCCTAAA
1252906 CCCT-AA
1 CCCTAAA
1252912 CCCTAAA
1 CCCTAAA
1252919 CCCTACACAA
1 CCCT--A-AA
1252929 CCCTAAA
1 CCCTAAA
*
1252936 CCCT-CA
1 CCCTAAA
*
1252942 CCCCATAA
1 CCCTA-AA
1252950 CCCTAAA
1 CCCTAAA
*
1252957 CCCGAAA
1 CCCTAAA
1252964 CCCTAAA
1 CCCTAAA
*
1252971 CCCTCAA
1 CCCTAAA
* *
1252978 CCCGAAC
1 CCCTAAA
*
1252985 CCCGAAA
1 CCCTAAA
1252992 CCCTAAA
1 CCCTAAA
*
1252999 -CCGAAA
1 CCCTAAA
*
1253005 CCCGAAA
1 CCCTAAA
*
1253012 CCCGAAA
1 CCCTAAA
*
1253019 CCCGAAA
1 CCCTAAA
1253026 CCCTAAA
1 CCCTAAA
* *
1253033 CCCGACA
1 CCCTAAA
1253040 CCCT-AA
1 CCCTAAA
*
1253046 CCCGAAA
1 CCCTAAA
* *
1253053 CCCGAAC
1 CCCTAAA
1253060 CCCTAAA
1 CCCTAAA
1253067 CCCTAAA
1 CCCTAAA
*
1253074 CCCTAAC
1 CCCTAAA
1253081 CCCTAAA
1 CCCTAAA
*
1253088 CCCTACA
1 CCCTAAA
*
1253095 CCCT-CA
1 CCCTAAA
1253101 CCCTAAA
1 CCCTAAA
1253108 CCCTAAA
1 CCCTAAA
1253115 CCCTAAA
1 CCCTAAA
1253122 CCCTAAA
1 CCCTAAA
1253129 CTCCTAAA
1 C-CCTAAA
*
1253137 --CGAAA
1 CCCTAAA
1253142 CCCTAAA
1 CCCTAAA
1253149 CCCTAAA
1 CCCTAAA
1253156 -CC-AAA
1 CCCTAAA
*
1253161 CCCTCAA
1 CCCTAAA
*
1253168 CCCGAAA
1 CCCTAAA
**
1253175 CCGAAAA
1 CCCTAAA
*
1253182 CCCGACAA
1 CCCTA-AA
* *
1253190 ACATAAA
1 CCCTAAA
* *
1253197 CCCGAAC
1 CCCTAAA
*
1253204 CCCGAAA
1 CCCTAAA
*
1253211 CCCGAAA
1 CCCTAAA
*
1253218 CCCCT-AC
1 -CCCTAAA
*
1253225 CCCGAAAA
1 CCC-TAAA
* *
1253233 CCACGACAC
1 CC-CTA-AA
* *
1253242 CCCGACA
1 CCCTAAA
* *
1253249 CCCGAAC
1 CCCTAAA
*
1253256 CCCGAAA
1 CCCTAAA
1253263 CCCCTAAA
1 -CCCTAAA
1253271 CCCTAAA
1 CCCTAAA
1253278 CCCTAAA
1 CCCTAAA
**
1253285 -CCTCACC
1 CCCT-AAA
*
1253292 CCCGACAAA
1 CCC--TAAA
1253301 CCCCT-AA
1 -CCCTAAA
*
1253308 CCC-GAA
1 CCCTAAA
* *
1253314 CCCGAAC
1 CCCTAAA
*
1253321 CCCTACA
1 CCCTAAA
**
1253328 CCCGCAA
1 CCCTAAA
* *
1253335 CCCGACA
1 CCCTAAA
1253342 CCCTAAA
1 CCCTAAA
*
1253349 CCCTAAC
1 CCCTAAA
*
1253356 CCCTAAC
1 CCCTAAA
** *
1253363 CCCGCAG
1 CCCTAAA
* *
1253370 CCCGAACC
1 CCCTAA-A
1253378 CCCTAAA
1 CCCTAAA
1253385 CCCTAAA
1 CCCTAAA
* *
1253392 CACGAAA
1 CCCTAAA
*
1253399 CCCGAAA
1 CCCTAAA
*
1253406 CCCGAAA
1 CCCTAAA
1253413 CCCTAAA
1 CCCTAAA
*
1253420 CCCTAAC
1 CCCTAAA
*
1253427 CCCGAAAAAA
1 CCC---TAAA
*
1253437 CCCGGAAA
1 CCC-TAAA
***
1253445 CAAAAAAAA
1 C--CCTAAA
**
1253454 AAC-AAA
1 CCCTAAA
****
1253460 AAAAAAA
1 CCCTAAA
*
1253467 CCCTTAA
1 CCCTAAA
*
1253474 CAC-AAA
1 CCCTAAA
1253480 CCCT-AA
1 CCCTAAA
1253486 CCC--AA
1 CCCTAAA
*
1253491 CCCTAAC
1 CCCTAAA
*
1253498 CCCGAAA
1 CCCTAAA
1253505 CCCT-AA
1 CCCTAAA
* *
1253511 CCCGAAC
1 CCCTAAA
1253518 CCCTAAA
1 CCCTAAA
* *
1253525 CCCGCAAC
1 CCC-TAAA
1253533 CCCTAAA
1 CCCTAAA
1253540 CCCTAAAAAA
1 CCCT---AAA
*
1253550 CCCGAAAA
1 CCC-TAAA
*
1253558 CCCTCAA
1 CCCTAAA
* *
1253565 -CCTCAC
1 CCCTAAA
1253571 CCCTAAA
1 CCCTAAA
1253578 CCCTAAA
1 CCCTAAA
*
1253585 CCC-GAA
1 CCCTAAA
*
1253591 CCCGAAA
1 CCCTAAA
1253598 CCCT-AA
1 CCCTAAA
1253604 CCCTAAA
1 CCCTAAA
1253611 CCCTAAA
1 CCCTAAA
*
1253618 CCC-GAA
1 CCCTAAA
*
1253624 CCCGAAA
1 CCCTAAA
*
1253631 CCCGAAA
1 CCCTAAA
1253638 CCCTAAA
1 CCCTAAA
*
1253645 CCCAAAA
1 CCCTAAA
1253652 CCC-AAA
1 CCCTAAA
*
1253658 CCCGAAA
1 CCCTAAA
*
1253665 CCCGAAAA
1 CCC-TAAA
*
1253673 CCCGAAA
1 CCCTAAA
*
1253680 CCCGAAA
1 CCCTAAA
1253687 CCCT-AA
1 CCCTAAA
*
1253693 CCCGAAA
1 CCCTAAA
*
1253700 CCCTCAA
1 CCCTAAA
1253707 CCCT-AA
1 CCCTAAA
1253713 CCCT-AA
1 CCCTAAA
*
1253719 CCCTACCA
1 CCCTA-AA
1253727 CCC-AAA
1 CCCTAAA
1253733 CCCTAAA
1 CCCTAAA
1253740 CCCTAAA
1 CCCTAAA
*
1253747 CCCGAAA
1 CCCTAAA
*
1253754 CCCTAAC
1 CCCTAAA
1253761 CCCTAAA
1 CCCTAAA
*
1253768 CCCTCAA
1 CCCTAAA
*
1253775 CCCAGAAA
1 CCC-TAAA
1253783 CCCT-AA
1 CCCTAAA
*
1253789 CCCTACACG
1 CCCTA-A-A
*
1253798 CCCGAAA
1 CCCTAAA
**
1253805 CCCTACC
1 CCCTAAA
1253812 CCCTAAAAA
1 CCCT--AAA
*
1253821 CCC-GAA
1 CCCTAAA
*
1253827 CCCAAAA
1 CCCTAAA
1253834 CCCTAAAAAA
1 CCCT---AAA
* *
1253844 CCCGACAC
1 CCCTA-AA
*
1253852 CCCGAAA
1 CCCTAAA
*
1253859 CCCGAAAAA
1 CCC--TAAA
1253868 CCCTAAA
1 CCCTAAA
1253875 -CCT-AA
1 CCCTAAA
1253880 CCCTAAA
1 CCCTAAA
*
1253887 CCCGAAA
1 CCCTAAA
1253894 CCCTAAA
1 CCCTAAA
*
1253901 CCCCGAAAA
1 -CCC-TAAA
*
1253910 CCCGAAA
1 CCCTAAA
1253917 CCCTAAAAA
1 CCCT--AAA
1253926 CCCTAAA
1 CCCTAAA
**
1253933 CCCGCAA
1 CCCTAAA
*
1253940 CCCTACA
1 CCCTAAA
1253947 CCCTAGAA
1 CCCTA-AA
*
1253955 CCCGAAA
1 CCCTAAA
*
1253962 CCCGAAA
1 CCCTAAA
*
1253969 CCCTACA
1 CCCTAAA
1253976 -CCTAAA
1 CCCTAAA
*
1253982 CCC-GAA
1 CCCTAAA
1253988 CCCTAAA
1 CCCTAAA
1253995 -CCTAAAAA
1 CCCT--AAA
*
1254003 CCCGAAA
1 CCCTAAA
*
1254010 CCC-GAA
1 CCCTAAA
*
1254016 CCCTACA
1 CCCTAAA
*
1254023 CCCTAAC
1 CCCTAAA
1254030 CCCT-AA
1 CCCTAAA
1254036 CCCTAAA
1 CCCTAAA
*
1254043 CCCTACA
1 CCCTAAA
*
1254050 CCCGCAAA
1 CCC-TAAA
* *
1254058 CCCGAAC
1 CCCTAAA
1254065 CCCTAAA
1 CCCTAAA
*
1254072 CACCGAAA
1 C-CCTAAA
* *
1254080 CCCGCACAC
1 CCC-TA-AA
1254089 CCCT-AA
1 CCCTAAA
1254095 CCCTAAA
1 CCCTAAA
1254102 CCCTAAA
1 CCCTAAA
1254109 CCCT-AA
1 CCCTAAA
*
1254115 CCC-GAA
1 CCCTAAA
*
1254121 CCCGAAA
1 CCCTAAA
*
1254128 CCCTAAC
1 CCCTAAA
1254135 CCCTAAA
1 CCCTAAA
1254142 CCCTAAA
1 CCCTAAA
1254149 CCGCATAAA
1 CC-C-TAAA
*
1254158 -CCTACA
1 CCCTAAA
1254164 CCCTAAA
1 CCCTAAA
1254171 -CCTAAA
1 CCCTAAA
* *
1254177 CCCTCAC
1 CCCTAAA
1254184 CCCT--A
1 CCCTAAA
1254189 CCCTAAA
1 CCCTAAA
1254196 -CCTAAAA
1 CCCT-AAA
1254203 CCCTAAA
1 CCCTAAA
*
1254210 CCCGAAA
1 CCCTAAA
*
1254217 GCCCGAAA
1 -CCCTAAA
*
1254225 CCCGAAA
1 CCCTAAA
*
1254232 CCCGAAA
1 CCCTAAA
*
1254239 CGCCGAAA
1 C-CCTAAA
*
1254247 CCCGAAAA
1 CCC-TAAA
1254255 CCC-AAA
1 CCCTAAA
1254261 CCCTAAAA
1 CCCT-AAA
*
1254269 CCCGAAA
1 CCCTAAA
1254276 CCCCTAAA
1 -CCCTAAA
*
1254284 CCCGAAA
1 CCCTAAA
* *
1254291 CCCGACA
1 CCCTAAA
*
1254298 CCATAAA
1 CCCTAAA
* *
1254305 ACCGAAA
1 CCCTAAA
1254312 CCCTAAA
1 CCCTAAA
1254319 CCCTAAA
1 CCCTAAA
*
1254326 CCC-GAA
1 CCCTAAA
*
1254332 CGCC-CAA
1 C-CCTAAA
*
1254339 CCCGAAAA
1 CCC-TAAA
*
1254347 CCCTACCA
1 CCCTA-AA
*
1254355 CCC-GAA
1 CCCTAAA
1254361 CCCTAAA
1 CCCTAAA
1254368 CCCTAAA
1 CCCTAAA
*
1254375 CCCGAAA
1 CCCTAAA
1254382 CCCTAAA
1 CCCTAAA
1254389 CCCATAAA
1 CCC-TAAA
1254397 CCC-AACA
1 CCCTAA-A
*
1254404 CCCTAAC
1 CCCTAAA
1254411 CCCT-AA
1 CCCTAAA
*
1254417 -CC-GAA
1 CCCTAAA
1254422 CCCTAAA
1 CCCTAAA
*
1254429 CCCGAAA
1 CCCTAAA
1254436 CCCTAAAAA
1 CCCT--AAA
*
1254445 CCCAAAA
1 CCCTAAA
*
1254452 CCCGAAA
1 CCCTAAA
*
1254459 CCC-GAA
1 CCCTAAA
*
1254465 CCCGAAA
1 CCCTAAA
1254472 CCCT--A
1 CCCTAAA
*
1254477 CCCGAAA
1 CCCTAAA
1254484 CCCTAAA
1 CCCTAAA
*
1254491 -CCGAGAA
1 CCCTA-AA
*
1254498 -CCGAAA
1 CCCTAAA
1254504 CCCTAAA
1 CCCTAAA
*
1254511 CCCGAAA
1 CCCTAAA
1254518 CCCT-AA
1 CCCTAAA
1254524 -CC-AAA
1 CCCTAAA
*
1254529 -CCGAAA
1 CCCTAAA
*
1254535 CCCCGAAA
1 -CCCTAAA
* *
1254543 CCCGACA
1 CCCTAAA
1254550 CCCTAAAA
1 CCCT-AAA
*
1254558 CCCTCAAC
1 CCCT-AAA
1254566 CCCTAAA
1 CCCTAAA
1254573 CCC-AAA
1 CCCTAAA
*
1254579 CCCGAAA
1 CCCTAAA
1254586 -CCTAAA
1 CCCTAAA
1254592 CCCTAAA
1 CCCTAAA
*
1254599 CCCTACA
1 CCCTAAA
1254606 CCCTAAA
1 CCCTAAA
*
1254613 CCCGACCAA
1 CCCTA--AA
* *
1254622 CCCGAAG
1 CCCTAAA
1254629 CCCT-AA
1 CCCTAAA
1254635 CCCTAAA
1 CCCTAAA
*
1254642 -CCGAAA
1 CCCTAAA
1254648 CCCTAAA
1 CCCTAAA
*
1254655 CCCGAAA
1 CCCTAAA
*
1254662 --C-GAA
1 CCCTAAA
**
1254666 CCCGCAA
1 CCCTAAA
*
1254673 CCCAAAAA
1 CCC-TAAA
*
1254681 CCCGAAA
1 CCCTAAA
*
1254688 CCC-GAA
1 CCCTAAA
*
1254694 CCCGAAAAA
1 CCC--TAAA
*
1254703 CCCGAAA
1 CCCTAAA
1254710 -CC--AA
1 CCCTAAA
*
1254714 CCCGAAA
1 CCCTAAA
*
1254721 CCC-GAA
1 CCCTAAA
*
1254727 CCAATAAA
1 CC-CTAAA
* *
1254735 CCCGACA
1 CCCTAAA
1254742 CCCTAAA
1 CCCTAAA
1254749 CCCTAAA
1 CCCTAAA
*
1254756 CCCGAAA
1 CCCTAAA
1254763 CCCTAAA
1 CCCTAAA
*
1254770 CCC-GAA
1 CCCTAAA
1254776 -CCTAAA
1 CCCTAAA
*
1254782 CCCGAAA
1 CCCTAAA
1254789 CCCTAAA
1 CCCTAAA
1254796 -CCTAAA
1 CCCTAAA
*
1254802 CCCGAAA
1 CCCTAAA
1254809 CCCT-AA
1 CCCTAAA
*
1254815 -CCGAAA
1 CCCTAAA
*
1254821 CCCGAAAA
1 CCC-TAAA
*
1254829 CCCCGAAA
1 -CCCTAAA
1254837 CCCTAAA
1 CCCTAAA
1254844 CCCTAAA
1 CCCTAAA
*
1254851 CCCGAAAAAA
1 CCC---TAAA
*
1254861 CCC-GAA
1 CCCTAAA
1254867 -CCTAAAA
1 CCCT-AAA
1254874 CCCTAAA
1 CCCTAAA
*
1254881 -CCGAAA
1 CCCTAAA
1254887 CCAC-AAA
1 CC-CTAAA
*
1254894 CAAACCGAAA
1 C---CCTAAA
1254904 CCCTAAA
1 CCCTAAA
*
1254911 -CCGAAA
1 CCCTAAA
*
1254917 CCC-GAA
1 CCCTAAA
1254923 -CCTAAA
1 CCCTAAA
1254929 --C-AAA
1 CCCTAAA
*
1254933 CCCGAAA
1 CCCTAAA
1254940 CCCTAAA
1 CCCTAAA
*
1254947 CCCGAAAA
1 CCC-TAAA
*
1254955 CCCGAAA
1 CCCTAAA
1254962 CCCT-AA
1 CCCTAAA
1254968 CCCTAAA
1 CCCTAAA
*
1254975 CCCGAAA
1 CCCTAAA
1254982 CCCT-AA
1 CCCTAAA
1254988 CCCTAAA
1 CCCTAAA
*
1254995 ACCTAAA
1 CCCTAAA
1255002 CCCTAAA
1 CCCTAAA
*
1255009 CCC--GA
1 CCCTAAA
1255014 CCCTAAA
1 CCCTAAA
1255021 -CCT-AA
1 CCCTAAA
1255026 CCCTAAAA
1 CCCT-AAA
1255034 CCCCCTAAA
1 --CCCTAAA
*
1255043 CCC--GA
1 CCCTAAA
1255048 -CCTAAA
1 CCCTAAA
1255054 CCC-AAA
1 CCCTAAA
1255060 CCCTAAA
1 CCCTAAA
*
1255067 CCCGAAA
1 CCCTAAA
*
1255074 CCCGAAA
1 CCCTAAA
*
1255081 CCCGAAA
1 CCCTAAA
*
1255088 CCCAAAA
1 CCCTAAA
*
1255095 CCCGAAA
1 CCCTAAA
*
1255102 CCCCGAAA
1 -CCCTAAA
*
1255110 CCCGAAA
1 CCCTAAA
1255117 CCCT-AA
1 CCCTAAA
*
1255123 -CCTCAA
1 CCCTAAA
**
1255129 CCCGCCAA
1 CCC-TAAA
*
1255137 CCC-GAA
1 CCCTAAA
1255143 CCCTAAA
1 CCCTAAA
*
1255150 -CCTCAA
1 CCCTAAA
**
1255156 CCCTACC
1 CCCTAAA
1255163 CCCTAAA
1 CCCTAAA
1255170 CCCTCAAAAA
1 CCCT---AAA
1255180 CCCACTAAAA
1 -CC-CT-AAA
*
1255190 CCCTCAAC
1 CCCT-AAA
**
1255198 CCCGCAA
1 CCCTAAA
1255205 -CCTAAA
1 CCCTAAA
1255211 CCCTAAA
1 CCCTAAA
1255218 CCCATAAA
1 CCC-TAAA
1255226 CCCTAAA
1 CCCTAAA
* *
1255233 CCCGACA
1 CCCTAAA
*
1255240 CCCGAAA
1 CCCTAAA
1255247 CCCT-AA
1 CCCTAAA
1255253 CCCTAAAA
1 CCCT-AAA
1255261 CCC-AAA
1 CCCTAAA
*
1255267 CCC-GAA
1 CCCTAAA
1255273 CCC-AAA
1 CCCTAAA
1255279 CACC--AA
1 C-CCTAAA
*
1255285 CCCGAAA
1 CCCTAAA
1255292 CCCT-AA
1 CCCTAAA
1255298 CCCTAAA
1 CCCTAAA
*
1255305 CCCGAAA
1 CCCTAAA
1255312 CCCTAAA
1 CCCTAAA
*
1255319 CCCCGAAA
1 -CCCTAAA
*
1255327 CCCGAAAA
1 CCC-TAAA
1255335 CCCTAAA
1 CCCTAAA
*
1255342 CCCGAAA
1 CCCTAAA
*
1255349 CCCTACA
1 CCCTAAA
1255356 CCCTAAA
1 CCCTAAA
1255363 CCCTAAA
1 CCCTAAA
*
1255370 -CCTACAC
1 CCCTA-AA
1255377 CCCTAAAA
1 CCCT-AAA
* *
1255385 CAC-GAA
1 CCCTAAA
*
1255391 CCCGAAA
1 CCCTAAA
1255398 -CCTAAA
1 CCCTAAA
*
1255404 CCCGAAA
1 CCCTAAA
1255411 -CCTAAA
1 CCCTAAA
1255417 CCCT-AA
1 CCCTAAA
1255423 CCCTAAAA
1 CCCT-AAA
*
1255431 CCCGAAA
1 CCCTAAA
1255438 CCCTAAA
1 CCCTAAA
*
1255445 CCCGAAA
1 CCCTAAA
*
1255452 CCCGAAA
1 CCCTAAA
*
1255459 -CCGAAA
1 CCCTAAA
1255465 CCCTAAA
1 CCCTAAA
*
1255472 CCCGAAA
1 CCCTAAA
*
1255479 CCCGAAA
1 CCCTAAA
*
1255486 CCCGAAA
1 CCCTAAA
*
1255493 CCC-GAA
1 CCCTAAA
*
1255499 CCC-GAA
1 CCCTAAA
*
1255505 CCCGAAA
1 CCCTAAA
1255512 CACCTAAA
1 C-CCTAAA
*
1255520 CCCGAAA
1 CCCTAAA
*
1255527 CCCCGAAAA
1 -CCC-TAAA
*
1255536 CCCGAAA
1 CCCTAAA
1255543 CCC-AAA
1 CCCTAAA
1255549 -CCTAAAA
1 CCCT-AAA
1255556 CCC-AAA
1 CCCTAAA
1255562 CCCTAAA
1 CCCTAAA
1255569 CCCTAAAA
1 CCCT-AAA
1255577 CCCTAAA
1 CCCTAAA
*
1255584 CCCGAAA
1 CCCTAAA
* *
1255591 CCCGACA
1 CCCTAAA
*
1255598 CCCTCAA
1 CCCTAAA
*
1255605 CCCT-CA
1 CCCTAAA
*
1255611 CCAC-GAA
1 CC-CTAAA
*
1255618 CCC-GAA
1 CCCTAAA
*
1255624 CCCTCAA
1 CCCTAAA
*
1255631 CCCTCAA
1 CCCTAAA
*
1255638 CCCT-AC
1 CCCTAAA
1255644 CCCTCAAA
1 CCCT-AAA
1255652 CCCTACAAA
1 CCCT--AAA
1255661 CCCTAAA
1 CCCTAAA
*
1255668 CACCGAAA
1 C-CCTAAA
1255676 CCCTAAAA
1 CCCT-AAA
*
1255684 CCCGAAA
1 CCCTAAA
*
1255691 CCCTAACC
1 CCCTAA-A
1255699 CCCTAAA
1 CCCTAAA
*
1255706 CCCGAAA
1 CCCTAAA
1255713 CCCTAAA
1 CCCTAAA
1255720 CCCTAAA
1 CCCTAAA
*
1255727 CCCGAAA
1 CCCTAAA
1255734 CCCCTAAA
1 -CCCTAAA
1255742 CCCTAAA
1 CCCTAAA
*
1255749 -CCGAAA
1 CCCTAAA
1255755 CACC-AAA
1 C-CCTAAA
1255762 CCCTAAA
1 CCCTAAA
**
1255769 CCCTCCA
1 CCCTAAA
*
1255776 -CC-ACA
1 CCCTAAA
*
1255781 CCCGAAA
1 CCCTAAA
1255788 CCCTACAA
1 CCCTA-AA
1255796 CCCT-AA
1 CCCTAAA
1255802 CCCT-AA
1 CCCTAAA
**
1255808 CCCGCCAA
1 CCC-TAAA
*
1255816 CCCTAAC
1 CCCTAAA
1255823 CCCTACAA
1 CCCTA-AA
*
1255831 CCCGAAA
1 CCCTAAA
1255838 CCCCTAAA
1 -CCCTAAA
*
1255846 CCCGAAA
1 CCCTAAA
**
1255853 CCCCCGAA
1 -CCCTAAA
*
1255861 CCCGAAA
1 CCCTAAA
1255868 -CCTAAA
1 CCCTAAA
1255874 CCCT-AA
1 CCCTAAA
*
1255880 CCC-GAA
1 CCCTAAA
*
1255886 CCCGAAA
1 CCCTAAA
*
1255893 CCCGAAA
1 CCCTAAA
1255900 CCCTAAA
1 CCCTAAA
*
1255907 CAC-AAA
1 CCCTAAA
*
1255913 -CCGAAA
1 CCCTAAA
*
1255919 CCCGAAA
1 CCCTAAA
*
1255926 CCCTCAA
1 CCCTAAA
* *
1255933 CCCGAAC
1 CCCTAAA
*
1255940 CCCGAAA
1 CCCTAAA
1255947 CCCTAAA
1 CCCTAAA
1255954 -CC--AA
1 CCCTAAA
*
1255958 CCCGAAA
1 CCCTAAA
*
1255965 CCC-AACC
1 CCCTAA-A
*
1255972 CCCGCAAA
1 CCC-TAAA
*
1255980 CCCGCAAA
1 CCC-TAAA
1255988 -CCTAAA
1 CCCTAAA
1255994 -CC--AA
1 CCCTAAA
1255998 CCCTAAAAA
1 CCCT--AAA
*
1256007 CCCGAACA
1 CCCTAA-A
*
1256015 CCCGAAA
1 CCCTAAA
* *
1256022 ACCGAAA
1 CCCTAAA
*
1256029 CCCGAAAA
1 CCC-TAAA
*
1256037 CCCAACAA
1 CCCTA-AA
1256045 CCAC-AAA
1 CC-CTAAA
*
1256052 CAC-AAA
1 CCCTAAA
1256058 CCCTAAA
1 CCCTAAA
*
1256065 CCCGAAA
1 CCCTAAA
*
1256072 CCC-GAA
1 CCCTAAA
1256078 CCCTAAA
1 CCCTAAA
*
1256085 CCCGAAA
1 CCCTAAA
**
1256092 --AAAAA
1 CCCTAAA
*
1256097 CCCCGAAA
1 -CCCTAAA
*
1256105 CAACC--AC
1 C--CCTAAA
**
1256112 CCCGGAA
1 CCCTAAA
1256119 CCCTAAA
1 CCCTAAA
* *
1256126 CCCGACA
1 CCCTAAA
**
1256133 CCCTACC
1 CCCTAAA
* *
1256140 CCCGAAC
1 CCCTAAA
*
1256147 CCCAAAGAAA
1 CCC---TAAA
*
1256157 CCCTCAA
1 CCCTAAA
1256164 CCCT-AA
1 CCCTAAA
1256170 CCCTAAA
1 CCCTAAA
1256177 CCCTAAA
1 CCCTAAA
*
1256184 CCCGAAA
1 CCCTAAA
*
1256191 CCCGAAA
1 CCCTAAA
*
1256198 CCCGAAA
1 CCCTAAA
1256205 CCCTAAA
1 CCCTAAA
*
1256212 CCCCAAAAA
1 -CCC-TAAA
*
1256221 CCCGAAA
1 CCCTAAA
1256228 CCCTAAAA
1 CCCT-AAA
*
1256236 CCC-GAA
1 CCCTAAA
*
1256242 CCCCAAA
1 CCCTAAA
*
1256249 CCC-CAA
1 CCCTAAA
* *
1256255 CCCCAAC
1 CCCTAAA
*
1256262 CCCCAAA
1 CCCTAAA
1256269 CCC-AAA
1 CCCTAAA
1256275 CCC-AAA
1 CCCTAAA
1256281 CCC
1 CCC
1256284 CACACCCGAA
Statistics
Matches: 3896, Mismatches: 702, Indels: 813
0.72 0.13 0.15
Matches are distributed among these distances:
4 21 0.01
5 89 0.02
6 712 0.18
7 2311 0.59
8 549 0.14
9 140 0.04
10 67 0.02
11 5 0.00
12 2 0.00
ACGTcount: A:0.40, C:0.46, G:0.06, T:0.08
Consensus pattern (7 bp):
CCCTAAA
Found at i:1251447 original size:67 final size:67
Alignment explanation
Indices: 1251327--1255593 Score: 312
Period size: 68 Copynumber: 63.8 Consensus size: 67
1251317 CCTAAACCGC
* *
1251327 AACCCTAAACCCTAAACCCTAAAACCCGACCCCGAAACCCTAAACCCTAAACCCCTAAACAAACC
1 AACCCGAAACCCTAAACCCTAAAACCCGACCCCGAAACCCTAAACCCGAAA-CCCTAAACAAACC
1251392 CGA
65 CGA
* * * * *
1251395 AACCCGAAACCC-GAACCCTAAACCCCTACCCCGAAACCCTAAACCCGCAACCCTAAACCCTAAC
1 AACCCGAAACCCTAAACCCTAAAACCCGACCCCGAAACCCTAAACCCGAAACCCTAAA--C-AAA
*
1251459 CCCTA
63 CCCGA
* * * ** ** *
1251464 ACCCCTAAAACACCCTAAACCCTAACACCCGACACCCTCAACCCTCCACCCTAAACCCGTAAACC
1 AACCC--GAA-ACCCTAAACCCTAAAACCCGAC-CCCGAAACCCTAAACCCGAAACCC-TAAA--
*
1251529 CTAAACCCTA
59 C-AAACCCGA
* ** * * * * * *
1251539 CACCCCTAACCCGAAACCCGAAACCCCGAACCCTAAACCCTAAACCCTAAACCCTAAAC---CCC
1 AACCCGAAACCCTAAACCCTAAAACCCGACCCCGAAACCCTAAACCCGAAACCCTAAACAAACCC
1251601 GA
66 GA
* * * ***
1251603 AACCCTAAACCCTAAACCCT--AACCCTAACCCCTAAAACACCCGCCACCCG-AACCCT-AAC--
1 AACCCGAAACCCTAAACCCTAAAACCC-GACCCC--GAA-ACCCTAAACCCGAAACCCTAAACAA
*
1251662 ACCCGC
62 ACCCGA
* ** * * * * *
1251668 AACCTC--ACCCCTCCACCCT-AACCCCTACCCCCGACACCAT-ACCCCGAAACCCTACCACCCT
1 AACC-CGAAACCCTAAACCCTAAAACCCGA-CCCCGAAACCCTAAACCCGAAACCCTA--A----
* *
1251729 AAAAACCCTA
58 ACAAACCCGA
* * * * * * * * *
1251739 ACCCCTACACCCTACACCCTCAACCCCAAACCCGAAACCCTAAACCCGAAACCCTAAACCCGAAC
1 AACCCGAAACCCTAAACCCTAAAACCCGACCCCGAAACCCTAAACCCGAAACCCTAAA--CAAAC
1251804 ACCGA
64 -CCGA
* * * * *
1251809 AACCC-TAACCCGACACCCTAAAAACCCGAAACCCGCAAACACCCT-AACCCGCAAA-CC-GAAC
1 AACCCGAAACCCTAAACCCT-AAAACCCG--ACCC-CGAA-ACCCTAAACCCG-AAACCCTAAAC
*
1251870 --CCCCGA
60 AAACCCGA
* * * * * *
1251876 AA-CCGAAACCCTAACCCCT-CAACCCGAACCCGAAACCCTACACCC-TAACCC--GAC-AACCC
1 AACCCGAAACCCTAAACCCTAAAACCCGACCCCGAAACCCTAAACCCGAAACCCTAAACAAACCC
1251935 GA
66 GA
* * * * *
1251937 AACCCTAAACCCCTAACCCCT--AACCCTACAACCG-AACCCTAAACCCGAAA-CCTAAACCCTA
1 AACCCGAAA-CCCTAAACCCTAAAACCCGAC-CCCGAAACCCTAAACCCGAAACCCTAAA--CAA
*
1251998 ACCC-T
62 ACCCGA
** * * * **
1252003 AACCCCTAACCCATAAAACCCTAAACCCCCCCTAACCCCTAAACCCTAAACCCTCAACCCTAACC
1 AACCCGAAACCC-T-AAACCCTAAA---ACCC-GACCCCGAAACCCTAAACCCGAAACCCTAA--
*
1252068 CCTAAACCCGA
58 AC-AAACCCGA
* * * * * **
1252079 AACCCGAACCCACTCAACCCT-AAACCAGCAACCCTAAACCCTCCACCCGAAACCCTAAACCTCA
1 AACCCGAAACC-CTAAACCCTAAAACCCG-ACCCCGAAACCCTAAACCCGAAACCCTAAA---CA
**
1252143 AACCTAA
61 AACCCGA
* * * * * * * **
1252150 AACCCTAAACCCGAAACCCCCGAAAAACCCTAACCCCTAAACCCTCAACCCTAAACCCTACCCCG
1 AACCCGAAACCCTAAA--CCC-TAAAACCC-GACCCCGAAACCCTAAACCCGAAACCCTA-AAC-
**
1252215 AAACCATA
60 AAACCCGA
* * * *
1252223 AA-CCTAAACCCTAAACCCT-AAACCCGCAACCCTAAACCCCTAAA-CCGACACCCT-AA-AAAC
1 AACCCGAAACCCTAAACCCTAAAACCCG-ACCCCGAAA-CCCTAAACCCGAAACCCTAAACAAAC
1252283 CCGA
64 CCGA
* * * * * **
1252287 AACCCTAAACCCTAACCCCT-AAACCCTACCACCCTAAACCCTAAACCCGTCAACCCTCCACCCG
1 AACCCGAAACCCTAAACCCTAAAACCCGA-C-CCCGAAACCCTAAACCCG-AAACCCT--AAAC-
1252351 AAACCCGA
60 AAACCCGA
* * * * * *
1252359 AA-CCGCAACCCGAAACCCTAAAACCCCGAACCCGAACCCGACACCTAAAACCTAAACCCTAACC
1 AACCCGAAACCCTAAACCCTAAAA-CCCGACCCCGAA----AC-CCTAAACCCGAAACCCTAA-A
*
1252423 CTAAACCCTA
59 C-AAACCCGA
* ** * * * * * *
1252433 AACCCTAAACCCGCAACCCT-AAACCCTACACCCTAAACCGC-CACCCCGAAACCCTACACCCTA
1 AACCCGAAACCCTAAACCCTAAAACCCGAC-CCCGAAACC-CTAAACCCGAAACCCTA-A-ACAA
*
1252496 ACCCTA
62 ACCCGA
* * * * * * * * * **
1252502 AACCC-TAACCCGAACCCCGAACCTAACCCTAACCCTAACCCCGAAACCCG-AACCC-CGA-AAA
1 AACCCGAAACCCTAAACCCTAA---AACCCGACCCCGAAACCCTAAACCCGAAACCCTAAACAAA
1252563 CCACGA
63 CC-CGA
* * * * ** *
1252569 AACCCTAAACCCTAAACCCT-AAACCCGAAACCCG-AACCCGAAACCCTAAACCCTACCCGAACA
1 AACCCGAAACCCTAAACCCTAAAACCCG-ACCCCGAAACCCTAAACCCGAAACCCTAAACAAAC-
**
1252632 CTAA
64 CCGA
* * * *
1252636 AACCCCGAAAACCCTAAACCC---ACCCCTCAACCCGAAAACCCT-AACGCCTAAACCCT-AA-A
1 AA-CCCG-AAACCCTAAACCCTAAAACCC-GACCCCG-AAACCCTAAAC-CCGAAACCCTAAACA
**
1252695 AACCCCT
61 AACCCGA
* * * * *
1252702 CACCCGCAACCCTAAA-CCT--AA--C-A-CCCTAAACCCCTAAACCCG-CACCCTAACCGAAAC
1 AACCCGAAACCCTAAACCCTAAAACCCGACCCCGAAA-CCCTAAACCCGAAACCCTAAAC-AAA-
*
1252759 CCCTA
63 CCCGA
* * * * * *
1252764 AACCCGAAACCCTAAACCC-GAACCCCGAAACACG-AACACT-AACCCG-AACCCGAAACCCTAA
1 AACCCGAAACCCTAAACCCTAAAACCCG-ACCCCGAAACCCTAAACCCGAAACCCTAAA--C-AA
*
1252825 ACCC-T
62 ACCCGA
* * *
1252830 AACCCGAAAACCTAAACCCT-AAACCCTAACCCGCAAAACCCTCAACCAACCCGAAACCCTAAAC
1 AACCCGAAACCCTAAACCCTAAAACCC-GACCC-CGAAACCCT--A--AACCCGAAACCCTAAA-
1252894 CGAAA-CCGTA
59 C-AAACCCG-A
* * * ** * * *
1252904 AACCC-TAACCCTAAACCCTACACAACCCTAAACCC-TCACCCCATAACCCTAAACCCGAAACCC
1 AACCCGAAACCCTAAACCCTA-A-AACCC-GACCCCGAAACCCTA-AACCCGAAACCCTAAA--C
**
1252967 TAAACCCTC
60 -AAACCCGA
* * * * *
1252976 AACCCGAACCCCGAAACCCT-AAA-CCGAAACCCGAAACCCGAAACCCGAAACCCTAAACCCGAC
1 AACCCGAAACCCTAAACCCTAAAACCCG-ACCCCGAAACCCTAAACCCGAAACCCTAAA--C-AA
*
1253039 ACCC-T
62 ACCCGA
* * * * * * * * **
1253044 AACCCGAAACCCGAACCCCT-AAACCCTAAACCCTAACCCCTAAACCCTACACCCTCACCCTAAA
1 AACCCGAAACCCTAAACCCTAAAACCC-GACCCCGAAACCCTAAACCCGAAACCCT-AAAC-AAA
*
1253108 CCCTA
63 CCCGA
* * *
1253113 AACCCTAAACCCTAAACTCCT-AAA--CGAAACCCTAAACCCTAAA-CC-AAACCCT---C-AAC
1 AACCCGAAACCCTAAAC-CCTAAAACCCG-ACCCCGAAACCCTAAACCCGAAACCCTAAACAAAC
1253169 CCGA
64 CCGA
* * * * ** **
1253173 AA-CCGAAAACCCGACAAACAT-AAACCCGAACCCCGAAACCCGAAACCC-CTACCC-CGA-AAA
1 AACCCG-AAACCCTA-AACCCTAAAACCCG-ACCCCGAAACCCTAAACCCGAAACCCTAAACAAA
1253233 CCACGA
63 CC-CGA
* * * * * * * * * ***
1253239 CACCCCGACACCCGAACCCCGAAACCCCTAAACCCTAAACCCTAAACCTC---ACCCCCGACAAA
1 -AACCCGAAACCCTAAACCCTAAAACCC-GACCCCGAAACCCTAAACC-CGAAACCCTAAACAAA
**
1253301 CCCCT
63 CCCGA
* * * * * * * * * *
1253306 AACCCGAAC-CCGAACCCCT-ACACCCGCAACCCGACACCCTAAACCCTAACCCCTAACCCCGCA
1 AACCCGAAACCCTAAACCCTAAAACCCG-ACCCCGAAACCCTAAACCCGAAACCCTAA--AC-AA
*
1253369 GCCCGA
62 ACCCGA
* * * * * * * *
1253375 ACCCCCTAAACCCTAAACAC-GAAACCCGAAACCCGAAACCCTAAACCCTAACCCCGAAA-AAAC
1 A-ACCCGAAACCCTAAACCCTAAAACCCG-ACCCCGAAACCCTAAACCCGAAACCCTAAACAAAC
1253438 CCGGA
64 CC-GA
*** ** *** * * *
1253443 AACAAAAAAAAAAC-AAA-AAAAAAACCCTTAACAC-AAACCCT-AACCC--AACCCT-AAC---
1 AAC--CCGAAACCCTAAACCCTAAAACCC-GACCCCGAAACCCTAAACCCGAAACCCTAAACAAA
1253498 CCCGA
63 CCCGA
* * * * *
1253503 AACCC-TAACCCGAACCCCT-AAACCCGCAACCCCTAAACCCTAAAAAACCCGAAAACCCTCAAC
1 AACCCGAAACCCTAAACCCTAAAACCCG--ACCCCGAAACCCT---AAACCCG-AAACCCT-AAA
* * *
1253566 CTCACCCCTA
59 C-AAACCCGA
* * * * * * *
1253576 AACCCTAAACCC-GAACCC-GAAACCCTAACCCTAAACCCTAAACCCG-AACCC----GAAACCC
1 AACCCGAAACCCTAAACCCTAAAACCCGACCCCGAAACCCTAAACCCGAAACCCTAAACAAACCC
1253634 GA
66 GA
* * * * *
1253636 AACCCTAAACCCAAAACCC--AAACCCGAAACCCGAAAACCCGAAACCCGAAACCCTAACCCGAA
1 AACCCGAAACCCTAAACCCTAAAACCCG-ACCCCG-AAACCCTAAACCCGAAACCCTAA-AC-AA
**
1253699 ACCCTC
62 ACCCGA
* ** * * * *
1253705 AACCC-TAACCCT-AACCCTACCACCCAAACCCTAAACCCTAAACCCGAAACCCTAACCCCTAAA
1 AACCCGAAACCCTAAACCCTAAAACCCGACCCCGAAACCCTAAACCCGAAACCCTAA--AC-AAA
**
1253768 CCCTC
63 CCCGA
*
1253773 AACCCAGAAACCCT-AACCCT---ACACG--CCCGAAACCCT--A-CC----CCCT-AA-AAACC
1 AACCC-GAAACCCTAAACCCTAAAACCCGACCCCGAAACCCTAAACCCGAAACCCTAAACAAACC
1253823 CG-
65 CGA
* * *
1253825 AACCCAAAACCCTAAA-----AAACCCGACACCCCGAAACCC-GAA----AAACCCTAAACCTAA
1 AACCCGAAACCCTAAACCCTAAAACCCG--ACCCCGAAACCCTAAACCCGAAACCCTAAA-CAAA
*
1253880 CCCTA
63 CCCGA
* ** * *
1253885 AACCCGAAACCCTAAACCCCGAAAACCCGAAACCCTAAAAACCCTAAACCCGCAACCCTACACCC
1 AACCCGAAACCCTAAA-CCCTAAAACCCG--ACCC-CGAAACCCTAAACCCGAAACCCTA-A-AC
1253950 TAGAACCCGA
60 -A-AACCCGA
* * * * * *
1253960 AACCCGAAACCCTACA-CCT-AAACCCGAACCCTAAA-CCTAAAAACCCGAAACCCGAACCCTAC
1 AACCCGAAACCCTAAACCCTAAAACCCGACCCCGAAACCCT--AAACCCGAAACCCTAA-AC-AA
*
1254022 ACCC-T
62 ACCCGA
** * * * * *
1254027 AACCCCTAACCCTAAACCCT-ACACCCGCAAACCCGAACCCCTAAACACCGAAACCC---GCACA
1 AACCCGAAACCCTAAACCCTAAAACCCG--ACCCCGAAACCCTAAAC-CCGAAACCCTAAACAAA
**
1254088 CCCCT
63 CCCGA
* * * * *
1254093 AACCCTAAACCCTAAACCCT--AACCCGAACCCGAAACCCTAACCCCTAAACCCTAAAC---CGC
1 AACCCGAAACCCTAAACCCTAAAACCCGACCCCGAAACCCTAAACCCGAAACCCTAAACAAACCC
1254153 -A
66 GA
* * * * * **
1254154 TAAACCTACACCCTAAA-CCT-AAACCCTCACCCC--TACCCTAAACCTAAAACCCTAAACCCGA
1 -AACCCGAAACCCTAAACCCTAAAACCC-GACCCCGAAACCCTAAACCCGAAACCCTAAA--C-A
1254215 AAGCCCGA
61 AA-CCCGA
* * *
1254223 AACCCGAAACCCGAAACGCC-GAAACCCGAAAACCC-AAACCCTAAAACCCGAAACCCCTAAACC
1 AACCCGAAACCCTAAAC-CCTAAAACCCG--ACCCCGAAACCCT-AAACCCGAAA-CCCTAAA--
1254286 CGAAACCCGA
59 C-AAACCCGA
* ** * * * * * *
1254296 CACCATAAAACCGAAACCCT-AAACCCTAAACCCG-AACGCC-CAACCCGAAAACCCT--AC-CA
1 AACCCGAAACCCTAAACCCTAAAACCC-GACCCCGAAAC-CCTAAACCCG-AAACCCTAAACAAA
1254355 CCCG-
63 CCCGA
* * * ** * * * *
1254359 AACCCTAAACCCTAAACCC-GAAACCCTAAACCCATAAACCC-AACACCCTAACCCCTAACCGAA
1 AACCCGAAACCCTAAACCCTAAAACCC--GACCCCGAAACCCTAA-ACCCGAAACCCTAAACAAA
*
1254422 CCCTA
63 CCCGA
* * * *
1254427 AACCCGAAACCCTAAAAACCC-AAAACCCGAAACCCG-AACCCGAAACCC--TACCCGAAACCCT
1 AACCCGAAACCCT--AAACCCTAAAACCCG-ACCCCGAAACCCTAAACCCGAAACCCTAAA--C-
1254488 AAA-CCGA
60 AAACCCGA
* * * *
1254495 GAA-CCGAAACCCTAAACCC-GAAACCCTAACCAAACCGAAACCCCGAAACCCGACACCCT--A-
1 -AACCCGAAACCCTAAACCCTAAAACCC-GACC---CCGAAA-CCCTAAACCCGAAACCCTAAAC
*
1254555 AAACCCTCA
60 AAACCC-GA
* * * ** * * * * * *
1254564 ACCCCTAAACCC-AAACCC-GAAACCTAAACCCTAAACCCTACACCCTAAACCC--GACCAACCC
1 AACCCGAAACCCTAAACCCTAAAACCCGACCCCGAAACCCTAAACCCGAAACCCTAAACAAACCC
1254625 GA
66 GA
* * * * * * *
1254627 AGCCC-TAACCCTAAA-CC-GAAACCCTAAACCCGAAA--C-GAACCCGCAACCC--AA-AAACC
1 AACCCGAAACCCTAAACCCTAAAACCC-GACCCCGAAACCCTAAACCCGAAACCCTAAACAAACC
1254683 CGA
65 CGA
* * * * *
1254686 AACCCG-AACCCGAAAAACCCGAAACCAACCCGAAACCCG-AACCAATAAACCCGACACCCTAAA
1 AACCCGAAACCC--TAAACCC-TAA--AACCCG-ACCCCGAAACC-CTAAACCCGAAACCCTAAA
1254749 CCCTAAACCCGA
59 --C-AAACCCGA
* * * * *
1254761 AACCCTAAACCC-GAA-CCT-AAACCCGAAACCCTAAA-CCTAAACCCGAAACCCTAACCGAAAC
1 AACCCGAAACCCTAAACCCTAAAACCCG-ACCCCGAAACCCTAAACCCGAAACCCTAAAC-AAAC
1254822 CCGAA
64 CCG-A
** * **
1254827 AACCCCGAAACCCTAAACCCT-AAACCCGA---AAAAACCC-GAACCTAAAACCCTAAACCGAAA
1 AA-CCCGAAACCCTAAACCCTAAAACCCGACCCCGAAACCCTAAACCCGAAACCCTAAA-C-AAA
1254887 CCAC-A
63 CC-CGA
* * *
1254892 AACAAACCGAAACCCTAAA-CC-GAAACCCGA-ACCTAAA--C-AAACCCGAAACCCT----AAA
1 AAC---CCGAAACCCTAAACCCTAAAACCCGACCCCGAAACCCTAAACCCGAAACCCTAAACAAA
1254947 CCCGAA
63 CCCG-A
* * * *
1254953 AACCCGAAACCCT-AACCCT-AAACCCGAAACCC-TAACCCTAAAACCTAAACCCT----AAACC
1 AACCCGAAACCCTAAACCCTAAAACCCG-ACCCCGAAACCCTAAACCCGAAACCCTAAACAAACC
1255011 CG-
65 CGA
* * *
1255013 -ACCCTAAA-CCT-AACCCTAAAACCCCCTAAACCCG--A-CCTAAACCC-AAACCCTAAACCCG
1 AACCCGAAACCCTAAACCCTAAAA--CCC-GACCCCGAAACCCTAAACCCGAAACCCTAAA--C-
1255071 AAACCCGA
60 AAACCCGA
* * * * * *
1255079 AACCCGAAACCCAAAACCCGAAACCCCGAAACCCGAAACCCT-AACCTC--AACCC---GCCAAC
1 AACCCGAAACCCTAAACCCTAAAACCCG-ACCCCGAAACCCTAAACC-CGAAACCCTAAACAAAC
1255138 CCG-
64 CCGA
* * ** * * * * *
1255141 AACCCTAAA-CCTCAACCCT-ACCCCCTAAACCCTCAAAAACCCACTAAAACCCTCAACCCCGCA
1 AACCCGAAACCCTAAACCCTAAAACCC--GACCC-C-GAAA-CC-CT-AAACCC-GAAACCC-TA
* *
1255204 ACCTAAACCCTA
57 AAC-AAACCCGA
* * * * * * *
1255216 AACCCATAAACCCTAAACCC-GACACCCGAAACCC-TAACCCTAAAACCC-AAACCCGAACCCAA
1 AACCC-GAAACCCTAAACCCTAAAACCCG-ACCCCGAAACCCT-AAACCCGAAACCCTAA-ACAA
1255278 ACACC--
62 AC-CCGA
* * *
1255283 AACCCGAAACCCT-AACCCT-AAACCCGAAACCCTAAACCCCGAAACCCGAAAACCCT----AAA
1 AACCCGAAACCCTAAACCCTAAAACCCG-ACCCCGAAA-CCCTAAACCCG-AAACCCTAAACAAA
1255342 CCCGA
63 CCCGA
* * * * *
1255347 AACCCTACACCCTAAACCCT-AAACCTAC-ACCCCTAAAACAC-GAACCCGAAA-CCT----AAA
1 AACCCGAAACCCTAAACCCTAAAACC--CGACCCC-GAAACCCTAAACCCGAAACCCTAAACAAA
1255404 CCCGA
63 CCCGA
* * * * *
1255409 AA-CCTAAACCCT-AACCCTAAAACCCGAAACCCTAAACCCGAAACCCGAAA-CCGAAACCCTAA
1 AACCCGAAACCCTAAACCCTAAAACCCG-ACCCCGAAACCCTAAACCCGAAACCCTAAA--C-AA
1255471 ACCCGA
62 ACCCGA
* * * **
1255477 AACCCGAAACCCGAAACCC--GAACCCGAACCCGAAACACCTAAACCCGAAACCC-CGA-AAACC
1 AACCCGAAACCCTAAACCCTAAAACCCGACCCCGAAAC-CCTAAACCCGAAACCCTAAACAAACC
1255538 CGA
65 CGA
* **
1255541 AACCC-AAA-CCTAAAACCC--AAACCCTAAACCCTAAAACCCTAAACCCGAAACCC
1 AACCCGAAACCCT-AAACCCTAAAACCC--GACCCCGAAACCCTAAACCCGAAACCC
1255594 GACACCCTCA
Statistics
Matches: 3138, Mismatches: 615, Indels: 896
0.67 0.13 0.19
Matches are distributed among these distances:
50 4 0.00
51 7 0.00
52 7 0.00
53 6 0.00
54 10 0.00
55 1 0.00
56 4 0.00
57 8 0.00
58 55 0.02
59 59 0.02
60 112 0.04
61 114 0.04
62 183 0.06
63 145 0.05
64 178 0.06
65 198 0.06
66 232 0.07
67 289 0.09
68 322 0.10
69 278 0.09
70 142 0.05
71 209 0.07
72 133 0.04
73 172 0.05
74 124 0.04
75 93 0.03
76 39 0.01
77 14 0.00
ACGTcount: A:0.40, C:0.46, G:0.06, T:0.08
Consensus pattern (67 bp):
AACCCGAAACCCTAAACCCTAAAACCCGACCCCGAAACCCTAAACCCGAAACCCTAAACAAACCC
GA
Found at i:1253462 original size:10 final size:11
Alignment explanation
Indices: 1253442--1253467 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
1253432 AAAAACCCGG
1253442 AAACAAAAAAA
1 AAACAAAAAAA
1253453 AAACAAAAAAA
1 AAACAAAAAAA
1253464 AAAC
1 AAAC
1253468 CCTTAACACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (11 bp):
AAACAAAAAAA
Found at i:1253866 original size:25 final size:23
Alignment explanation
Indices: 1253816--1253867 Score: 68
Period size: 25 Copynumber: 2.2 Consensus size: 23
1253806 CCTACCCCCT
*
1253816 AAAAACCCGAACCCAAAACCCTA
1 AAAAACCCGAACCCAAAACCCGA
*
1253839 AAAAACCCGACACCCCGAAACCCGA
1 AAAAACCCGA-A-CCCAAAACCCGA
1253864 AAAA
1 AAAA
1253868 CCCTAAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 10 0.40
24 1 0.04
25 14 0.56
ACGTcount: A:0.52, C:0.38, G:0.08, T:0.02
Consensus pattern (23 bp):
AAAAACCCGAACCCAAAACCCGA
Found at i:1253868 original size:24 final size:23
Alignment explanation
Indices: 1253812--1254008 Score: 71
Period size: 23 Copynumber: 8.7 Consensus size: 23
1253802 AAACCCTACC
1253812 CCCT-AAAAACCCGAACCCAAAA
1 CCCTAAAAAACCCGAACCCAAAA
*
1253834 CCCTAAAAAACCCGACACCCCGAAA
1 CCCTAAAAAACCCGA-A-CCCAAAA
* * * *
1253859 CCC-GAAAAACCCTAAACC-TAA
1 CCCTAAAAAACCCGAACCCAAAA
*
1253880 CCCT---AAACCCGAAACCCTAAA
1 CCCTAAAAAACCCG-AACCCAAAA
**
1253901 CCC-CGAAAACCCGAAACCCTAAAAA
1 CCCTAAAAAACCCG-AACCC--AAAA
* *
1253926 CCCT---AAACCCGCAACCCTACA
1 CCCTAAAAAACCCG-AACCCAAAA
* *
1253947 CCCT--AGAACCCGAAACCCGAAA
1 CCCTAAAAAACCCG-AACCCAAAA
* *
1253969 CCCTACACCTAAACCCGAACCCTAAA
1 CCCTA-A--AAAACCCGAACCCAAAA
1253995 -CCT-AAAAACCCGAA
1 CCCTAAAAAACCCGAA
1254009 ACCCGAACCC
Statistics
Matches: 137, Mismatches: 20, Indels: 37
0.71 0.10 0.19
Matches are distributed among these distances:
19 6 0.04
20 4 0.03
21 25 0.18
22 23 0.17
23 37 0.27
24 10 0.07
25 18 0.13
26 8 0.06
27 6 0.04
ACGTcount: A:0.44, C:0.43, G:0.07, T:0.07
Consensus pattern (23 bp):
CCCTAAAAAACCCGAACCCAAAA
Found at i:1253912 original size:16 final size:16
Alignment explanation
Indices: 1253878--1253935 Score: 75
Period size: 16 Copynumber: 3.8 Consensus size: 16
1253868 CCCTAAACCT
1253878 AACCCTAAA-CCCG-A
1 AACCCTAAACCCCGAA
1253892 AACCCTAAACCCCGAA
1 AACCCTAAACCCCGAA
* **
1253908 AACCCGAAACCCTAAA
1 AACCCTAAACCCCGAA
1253924 AACCCTAAACCC
1 AACCCTAAACCC
1253936 GCAACCCTAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
14 9 0.24
15 4 0.11
16 25 0.66
ACGTcount: A:0.45, C:0.43, G:0.05, T:0.07
Consensus pattern (16 bp):
AACCCTAAACCCCGAA
Found at i:1253964 original size:29 final size:27
Alignment explanation
Indices: 1253895--1255967 Score: 416
Period size: 27 Copynumber: 77.6 Consensus size: 27
1253885 AACCCGAAAC
1253895 CCTAAACCCCGAAAACCCGAAACCCTA-A
1 CCTAAA-CCCG-AAACCCGAAACCCTACA
* *
1253923 ---AAACCCTAAACCCGCAACCCTACA
1 CCTAAACCCGAAACCCGAAACCCTACA
1253947 CCCTAGAACCCGAAACCCGAAACCCTACA
1 -CCTA-AACCCGAAACCCGAAACCCTACA
*
1253976 CCTAAACCCG-AACCCTAAA-CCTA-A
1 CCTAAACCCGAAACCCGAAACCCTACA
1254000 ---AAACCCGAAACCCG-AACCCTACA
1 CCTAAACCCGAAACCCGAAACCCTACA
** *
1254023 CCCT-AACCCCTAACCCTAAACCCTACA
1 -CCTAAACCCGAAACCCGAAACCCTACA
* * * * *
1254050 CCCGCAAACCCGAACCCCTAAACACCGAAA
1 -CC-TAAACCCGAAACCCGAAAC-CCTACA
* * ** * *
1254080 CCCGCACACCCCTAACCCTAAACCCTAAA
1 -CC-TAAACCCGAAACCCGAAACCCTACA
*
1254109 CCCT-AACCCG-AACCCGAAACCCTAACC
1 -CCTAAACCCGAAACCCGAAACCCT-ACA
* *
1254136 CCTAAACCCTAAA-CCGCATAAACCTACA
1 CCTAAACCCGAAACCCG-A-AACCCTACA
* ** *
1254164 CCCTAAA-CCTAAACCCTCACCCCTAC-
1 -CCTAAACCCGAAACCCGAAACCCTACA
** * * *
1254190 CCTAAACCTAAAACCCTAAACCCGAAA
1 CCTAAACCCGAAACCCGAAACCCTACA
* * *
1254217 GCCCGAAACCCGAAACCCGAAACGCCGAAA
1 --CCTAAACCCGAAACCCGAAAC-CCTACA
* * * *
1254247 CCCGAAAACCC-AAACCCTAAAACCCGAAACC
1 -CC-TAAACCCGAAACCC-GAAACCC--TACA
* * *
1254278 CCTAAACCCGAAACCCGACACCATAAAA
1 CCTAAACCCGAAACCCGAAACCCT-ACA
* * * *
1254306 CCGAAACCCTAAACCCTAAACCCGA-A
1 CCTAAACCCGAAACCCGAAACCCTACA
** * * *
1254332 CGCCCAACCCGAAAACCCTACCACCCGA-A
1 C-CTAAACCCG-AAACCCGA-AACCCTACA
* *
1254361 CCCTAAACCCTAAACCCGAAACCCTAAA
1 -CCTAAACCCGAAACCCGAAACCCTACA
* *
1254389 CCCATAAACCC-AACACCCTAACCCCTA-A
1 -CC-TAAACCCGAA-ACCCGAAACCCTACA
* * *
1254417 CC-GAACCCTAAACCCGAAACCCTAAAAA
1 CCTAAACCCGAAACCCGAAACCCT--ACA
* * *
1254445 CCCAAAACCCGAAACCCG-AACCCGAAA
1 -CCTAAACCCGAAACCCGAAACCCTACA
* * *
1254472 CCCT--ACCCGAAACCCTAAA-CCGAGAA
1 -CCTAAACCCGAAACCCGAAACCCTA-CA
* *
1254498 CCGAAACCCTAAACCCGAAACCCTA-A
1 CCTAAACCCGAAACCCGAAACCCTACA
*
1254524 CC-AAA-CCGAAACCCCGAAACCCGACA
1 CCTAAACCCGAAA-CCCGAAACCCTACA
* * * *
1254550 CCCTAAAACCCTCAACCCCTAAACCC-AAA
1 -CCT-AAACCC-GAAACCCGAAACCCTACA
* * *
1254579 CCCGAAA-CCTAAACCCTAAACCCTACA
1 -CCTAAACCCGAAACCCGAAACCCTACA
*
1254606 CCCTAAACCCGACCAACCCGAAGCCCTA-A
1 -CCTAAACCCGA--AACCCGAAACCCTACA
* *
1254635 CCCTAAA-CCGAAACCCTAAACCCGA-A
1 -CCTAAACCCGAAACCCGAAACCCTACA
* * * * * *
1254661 AC-GAACCCGCAACCCAAAAACCCGAAA
1 CCTAAACCCGAAACCC-GAAACCCTACA
** *
1254688 CCCGAACCCGAAAAACCCGAAA-CCAAC-
1 CCTAAACCCG--AAACCCGAAACCCTACA
* ** *
1254715 CCGAAACCCG-AACCAATAAACCCGACA
1 CCTAAACCCGAAACC-CGAAACCCTACA
* *
1254742 CCCTAAACCCTAAACCCGAAACCCTAAA
1 -CCTAAACCCGAAACCCGAAACCCTACA
** *
1254770 CCCGAA-CCTAAACCCG-AA----AC-
1 CCTAAACCCGAAACCCGAAACCCTACA
*
1254790 CCTAAA-CCTAAACCCGAAACCCTA-A
1 CCTAAACCCGAAACCCGAAACCCTACA
* *
1254815 CCGAAACCCGAAAACCCCGAAACCCTAAA
1 CCTAAACCCG-AAA-CCCGAAACCCTACA
*
1254844 CCCTAAACCCGAAA----AAACCCGA-A
1 -CCTAAACCCGAAACCCGAAACCCTACA
* *
1254867 CCTAAAACCCTAAA-CCGAAACCACAAACAAA
1 CCT-AAACCCGAAACCCGAAACC-C-TAC--A
* * *
1254898 CCGAAACCCTAAA-CCGAAACCCGA-A
1 CCTAAACCCGAAACCCGAAACCCTACA
1254923 CCTAAA--C-AAACCCG-AA----AC-
1 CCTAAACCCGAAACCCGAAACCCTACA
1254941 CCTAAACCCGAAAACCCGAAACCCTA-A
1 CCTAAACCCG-AAACCCGAAACCCTACA
* *
1254968 CCCTAAACCCGAAACCC-TAACCCTAAAA
1 -CCTAAACCCGAAACCCGAAACCCT-ACA
* *
1254996 CCTAAACCCTAAACCCG--ACCCTAAA
1 CCTAAACCCGAAACCCGAAACCCTACA
* * *
1255021 CCT-AACCCTAAAACC----CCCTAAA
1 CCTAAACCCGAAACCCGAAACCCTACA
** * *
1255043 CC-CGA-CCTAAACCC-AAACCCTAAA
1 CCTAAACCCGAAACCCGAAACCCTACA
* * *
1255067 CCCGAAACCCGAAACCCGAAACCCAAAA
1 -CCTAAACCCGAAACCCGAAACCCTACA
*
1255095 CCCGAAACCCCGAAACCCGAAACCCTA-A
1 -CCTAAA-CCCGAAACCCGAAACCCTACA
* * *
1255123 CCTCAACCCGCCAACCCG-AACCCTAAA
1 CCTAAACCCG-AAACCCGAAACCCTACA
* * ** *
1255150 CCTCAACCCTACCCCCTAAACCCT-CA
1 CCTAAACCCGAAACCCGAAACCCTACA
* * ** **
1255176 --AAAACCCACTAAAACCCTCAACCCCGCAA
1 CCTAAA-CC-C-GAAACCCGAAACCCTAC-A
* * *
1255205 CCTAAACCCTAAACCCATAAACCCTAAA
1 CCTAAACCCGAAACCC-GAAACCCTACA
* * * *
1255233 CCCGACACCCGAAACCC-TAACCCTAAAA
1 -CCTAAACCCGAAACCCGAAACCCT-ACA
* *
1255261 CCCAAACCCG-AACCC-AAACACCAAC-
1 CCTAAACCCGAAACCCGAAAC-CCTACA
* * * * *
1255286 CCGAAACCC-TAACCCTAAACCCGAAA
1 CCTAAACCCGAAACCCGAAACCCTACA
*
1255312 CCCTAAACCCCGAAACCCGAAAACCCTAAA
1 -CCTAAA-CCCGAAACCCG-AAACCCTACA
* * * * *
1255342 CCCGAAACCCTACACCCTAAACCCTAAA
1 -CCTAAACCCGAAACCCGAAACCCTACA
* * * * *
1255370 CCTACACCCCTAAAACACG-AACCCGAAA
1 CCTA-AACCC-GAAACCCGAAACCCTACA
*
1255398 CCTAAACCCGAAA-CCTAAACCCTA-A
1 CCTAAACCCGAAACCCGAAACCCTACA
*
1255423 CCCT--A----AAACCCGAAACCCTAAA
1 -CCTAAACCCGAAACCCGAAACCCTACA
* *
1255445 CCCGAAACCCGAAA-CCGAAACCCTAAA
1 -CCTAAACCCGAAACCCGAAACCCTACA
* *
1255472 CCCGAAACCCGAAACCCGAAACCCGA-A
1 -CCTAAACCCGAAACCCGAAACCCTACA
** * * *
1255499 CCCGAACCCGAAACACCTAAACCCGAAACC
1 CCTAAACCCGAAAC-CCGAAACCC--TACA
*
1255529 CCGAAAACCCGAAACCC-AAA-CCT--A
1 CC-TAAACCCGAAACCCGAAACCCTACA
* *
1255553 ---AAACCC-AAACCCTAAACCCTAAAA
1 CCTAAACCCGAAACCCGAAACCCT-ACA
*
1255577 CCCTAAACCCGAAACCCGACACCCT-CAA
1 -CCTAAACCCGAAACCCGAAACCCTAC-A
*
1255605 CCCT-CACCACG-AACCCG-AACCCT-CAA
1 -CCTAAACC-CGAAACCCGAAACCCTAC-A
* * * *
1255631 CCCTCAACCC-TACCCCTCAAACCCTACAAA
1 -CCTAAACCCGAAACCC-GAAACCCTAC--A
* * *
1255661 CCCTAAACACCGAAACCCTAAAACCCGAAA
1 -CCTAAAC-CCGAAACCC-GAAACCCTACA
* * *
1255691 CCCTAACCCCCTAAACCCGAAACCCTAAA
1 -CCTAA-ACCCGAAACCCGAAACCCTACA
* *
1255720 CCCTAAACCCGAAACCCCTAAACCCTAAA
1 -CCTAAACCCGAAA-CCCGAAACCCTACA
* * *
1255749 CCGAAACACC-AAACCCTAAACCCTCCA
1 CCTAAAC-CCGAAACCCGAAACCCTACA
* *
1255776 CC-ACACCCGAAACCCTACAACCCTA-A
1 CCTAAACCCGAAACCCGA-AACCCTACA
* * *
1255802 CCCT-AACCCGCCAACCCTAACCCCTACAA
1 -CCTAAACCCG-AAACCCGAAACCCTAC-A
* *
1255831 CCCGAAACCCCTAAACCCGAAA-CC--C-
1 -CCTAAA-CCCGAAACCCGAAACCCTACA
* *
1255856 CC-GAACCCGAAA-CCTAAACCCTA-A
1 CCTAAACCCGAAACCCGAAACCCTACA
** *
1255880 CCCGAACCCGAAACCCGAAACCCTAAA
1 CCTAAACCCGAAACCCGAAACCCTACA
1255907 CAC-AAA-CCGAAACCCGAAACCCT---
1 C-CTAAACCCGAAACCCGAAACCCTACA
* *
1255930 -C--AACCCGAACCCCGAAACCCTAAA
1 CCTAAACCCGAAACCCGAAACCCTACA
1255954 CC--AACCCGAAACCC
1 CCTAAACCCGAAACCC
1255968 AACCCCCGCA
Statistics
Matches: 1588, Mismatches: 253, Indels: 411
0.71 0.11 0.18
Matches are distributed among these distances:
18 7 0.00
19 6 0.00
20 29 0.02
21 55 0.03
22 46 0.03
23 33 0.02
24 50 0.03
25 137 0.09
26 232 0.15
27 282 0.18
28 236 0.15
29 269 0.17
30 169 0.11
31 25 0.02
32 12 0.01
ACGTcount: A:0.41, C:0.45, G:0.07, T:0.07
Consensus pattern (27 bp):
CCTAAACCCGAAACCCGAAACCCTACA
Found at i:1254706 original size:9 final size:10
Alignment explanation
Indices: 1254653--1254721 Score: 51
Period size: 11 Copynumber: 7.0 Consensus size: 10
1254643 CGAAACCCTA
1254653 AACCCGAAAC
1 AACCCGAAAC
1254663 GAACCCG---C
1 -AACCCGAAAC
1254671 AACCC-AAA-
1 AACCCGAAAC
1254679 AACCCGAAACCC
1 AACCCGAAA--C
1254691 GAACCCGAAA-
1 -AACCCGAAAC
1254701 AACCCGAAACC
1 AACCCGAAA-C
1254712 AACCCGAAAC
1 AACCCGAAAC
1254722 CCGAACCAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 21
0.70 0.00 0.30
Matches are distributed among these distances:
7 5 0.10
8 6 0.12
9 12 0.25
10 1 0.02
11 15 0.31
13 9 0.19
ACGTcount: A:0.46, C:0.42, G:0.12, T:0.00
Consensus pattern (10 bp):
AACCCGAAAC
Found at i:1255965 original size:11 final size:12
Alignment explanation
Indices: 1255828--1255972 Score: 61
Period size: 13 Copynumber: 11.5 Consensus size: 12
1255818 CTAACCCCTA
1255828 CAACCCGAAACCC
1 CAACCCGAAA-CC
1255841 CTAAACCCGAAA-C
1 C--AACCCGAAACC
1255854 C--CCCG-AACC
1 CAACCCGAAACC
* *
1255863 CGAAACCTAAACC
1 C-AACCCGAAACC
1255876 CTAACCCG-AACC
1 C-AACCCGAAACC
1255888 CGAAACCCGAAACC
1 C--AACCCGAAACC
*
1255902 CTAAACAC-AAACC
1 C--AACCCGAAACC
*
1255915 GAAACCCGAAACCC
1 -CAACCCGAAA-CC
*
1255929 TCAACCCGAACCC
1 -CAACCCGAAACC
*
1255942 CGAAACCCTAAA-C
1 C--AACCCGAAACC
1255955 CAACCCGAAACC
1 CAACCCGAAACC
1255967 CAACCC
1 CAACCC
1255973 CCGCAAACCC
Statistics
Matches: 101, Mismatches: 16, Indels: 31
0.68 0.11 0.21
Matches are distributed among these distances:
8 2 0.02
9 6 0.06
11 8 0.08
12 19 0.19
13 30 0.30
14 27 0.27
15 9 0.09
ACGTcount: A:0.41, C:0.47, G:0.08, T:0.04
Consensus pattern (12 bp):
CAACCCGAAACC
Found at i:1256023 original size:29 final size:28
Alignment explanation
Indices: 1255991--1256077 Score: 74
Period size: 29 Copynumber: 3.0 Consensus size: 28
1255981 CCGCAAACCT
1255991 AAACCAACCCTAAAAACCCGAACACCCGA
1 AAACCAACCCT-AAAACCCGAACACCCGA
*
1256020 AAACCGAAACCCGAAAACCC-AACAACCAC-A
1 AAACC--AACCCTAAAACCCGAAC-ACC-CGA
*
1256050 AACACAAACCCT-AAACCCGAA-ACCCGA
1 AA-ACCAACCCTAAAACCCGAACACCCGA
1256077 A
1 A
1256078 CCCTAAACCC
Statistics
Matches: 48, Mismatches: 3, Indels: 16
0.72 0.04 0.24
Matches are distributed among these distances:
26 1 0.02
27 5 0.10
28 6 0.12
29 15 0.31
30 13 0.27
31 8 0.17
ACGTcount: A:0.51, C:0.40, G:0.07, T:0.02
Consensus pattern (28 bp):
AAACCAACCCTAAAACCCGAACACCCGA
Found at i:1256072 original size:20 final size:20
Alignment explanation
Indices: 1256049--1256091 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
1256039 CAACAACCAC
1256049 AAACACAAACCCTAAACCCG
1 AAACACAAACCCTAAACCCG
* *
1256069 AAACCCGAACCCTAAACCCG
1 AAACACAAACCCTAAACCCG
1256089 AAA
1 AAA
1256092 AAAAACCCCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.40, G:0.07, T:0.05
Consensus pattern (20 bp):
AAACACAAACCCTAAACCCG
Found at i:1256173 original size:13 final size:13
Alignment explanation
Indices: 1256155--1256303 Score: 66
Period size: 13 Copynumber: 10.9 Consensus size: 13
1256145 ACCCCAAAGA
*
1256155 AACCCTCAACCCT
1 AACCCTAAACCCT
1256168 AACCCTAAACCCT
1 AACCCTAAACCCT
* *
1256181 AAACCCGAAACCCGA
1 -AACCCTAAACCC-T
*
1256196 AACCCGAAACCCT
1 AACCCTAAACCCT
* *
1256209 AAACCCCAAAAACCCGA
1 -AA-CCC-TAAACCC-T
*
1256226 AACCCTAAAACCCG
1 AACCCT-AAACCCT
* *
1256240 AACCCCAAACCCC
1 AACCCTAAACCCT
* * *
1256253 AACCCCAACCCCCA
1 AACCCTAA-ACCCT
*
1256267 AACCC-AAACCCA
1 AACCCTAAACCCT
* * *
1256279 AACCCCACACCCG
1 AACCCTAAACCCT
*
1256292 AACCCCAAACCC
1 AACCCTAAACCC
1256304 CACAGCCCGC
Statistics
Matches: 111, Mismatches: 16, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
12 9 0.08
13 44 0.40
14 38 0.34
15 12 0.11
16 8 0.07
ACGTcount: A:0.41, C:0.51, G:0.04, T:0.04
Consensus pattern (13 bp):
AACCCTAAACCCT
Found at i:1256195 original size:51 final size:52
Alignment explanation
Indices: 1256117--1256305 Score: 131
Period size: 51 Copynumber: 3.7 Consensus size: 52
1256107 ACCACCCCGG
* * * * * *
1256117 AACCCTAAACCCGACACCCTACCCCCGAACCCCAAAGAAACCCTCAA-CCC-T
1 AACCCTAAACCCTAAACCCGAACCCCGAACCCC-AAGAAACCCTAAACCCCAA
* *
1256168 AACCCTAAACCCTAAACCCGAAACCCGAAACCC--GAAACCCTAAACCCCAAA
1 AACCCTAAACCCTAAACCCGAACCCCGAACCCCAAGAAACCCTAAACCCC-AA
* * * * *
1256219 AACCCGAAACCCTAAAACCCGAACCCCAAACCCCAACCCCAACCCCCAAA-CCC-A
1 AACCCTAAACCCT-AAACCCGAACCCCGAACCCCAA---GAAACCCTAAACCCCAA
* * *
1256273 AACCC-AAACCCCACACCCGAACCCCAAACCCCA
1 AACCCTAAACCCTAAACCCGAACCCCGAACCCCA
1256306 CAGCCCGCAA
Statistics
Matches: 112, Mismatches: 17, Indels: 17
0.77 0.12 0.12
Matches are distributed among these distances:
48 10 0.09
49 3 0.03
51 39 0.35
52 37 0.33
53 6 0.05
54 6 0.05
56 3 0.03
57 8 0.07
ACGTcount: A:0.40, C:0.51, G:0.05, T:0.04
Consensus pattern (52 bp):
AACCCTAAACCCTAAACCCGAACCCCGAACCCCAAGAAACCCTAAACCCCAA
Found at i:1256285 original size:7 final size:7
Alignment explanation
Indices: 1255054--1256640 Score: 490
Period size: 7 Copynumber: 228.6 Consensus size: 7
1255044 CCGACCTAAA
1255054 CCCAAAC
1 CCCAAAC
*
1255061 CCTAAAC
1 CCCAAAC
*
1255068 CCGAAAC
1 CCCAAAC
*
1255075 CCGAAAC
1 CCCAAAC
*
1255082 CCGAAAC
1 CCCAAAC
*
1255089 CCAAAAC
1 CCCAAAC
*
1255096 CCGAAAC
1 CCCAAAC
1255103 CCCGAAAC
1 CCC-AAAC
*
1255111 CCGAAA-
1 CCCAAAC
*
1255117 CCCTAAC
1 CCCAAAC
*
1255124 CTC-AAC
1 CCCAAAC
*
1255130 CCGCCAA-
1 CC-CAAAC
*
1255137 CCCGAAC
1 CCCAAAC
*
1255144 CCTAAAC
1 CCCAAAC
*
1255151 CTC-AA-
1 CCCAAAC
* *
1255156 CCCTACC
1 CCCAAAC
1255163 CCCTAAAC
1 CCC-AAAC
1255171 CCTCAAAAAC
1 CC-C--AAAC
1255181 CCACTAAAAC
1 CC-C--AAAC
1255191 CCTC-AAC
1 CC-CAAAC
*
1255198 CCCGCAA-
1 CCC-AAAC
*
1255205 CCTAAAC
1 CCCAAAC
*
1255212 CCTAAAC
1 CCCAAAC
*
1255219 CCATAAAC
1 CC-CAAAC
*
1255227 CCTAAAC
1 CCCAAAC
* *
1255234 CCGACAC
1 CCCAAAC
*
1255241 CCGAAA-
1 CCCAAAC
*
1255247 CCCTAAC
1 CCCAAAC
* *
1255254 CCTAAAA
1 CCCAAAC
1255261 CCCAAA-
1 CCCAAAC
*
1255267 CCCGAA-
1 CCCAAAC
1255273 CCCAAAC
1 CCCAAAC
*
1255280 ACC-AAC
1 CCCAAAC
*
1255286 CCGAAA-
1 CCCAAAC
*
1255292 CCCTAAC
1 CCCAAAC
*
1255299 CCTAAAC
1 CCCAAAC
*
1255306 CCGAAAC
1 CCCAAAC
*
1255313 CCTAAAC
1 CCCAAAC
1255320 CCCGAAAC
1 CCC-AAAC
*
1255328 CCGAAAAC
1 CC-CAAAC
*
1255336 CCTAAAC
1 CCCAAAC
*
1255343 CCGAAAC
1 CCCAAAC
* *
1255350 CCTACAC
1 CCCAAAC
*
1255357 CCTAAAC
1 CCCAAAC
*
1255364 CCTAAA-
1 CCCAAAC
* *
1255370 CCTACAC
1 CCCAAAC
*
1255377 CCCTAAAA
1 CCC-AAAC
* *
1255385 CACGAAC
1 CCCAAAC
*
1255392 CCGAAA-
1 CCCAAAC
*
1255398 CCTAAAC
1 CCCAAAC
*
1255405 CCGAAA-
1 CCCAAAC
*
1255411 CCTAAA-
1 CCCAAAC
*
1255417 CCCTAAC
1 CCCAAAC
*
1255424 CCTAAAAC
1 CC-CAAAC
*
1255432 CCGAAAC
1 CCCAAAC
*
1255439 CCTAAAC
1 CCCAAAC
*
1255446 CCGAAAC
1 CCCAAAC
*
1255453 CCGAAA-
1 CCCAAAC
*
1255459 CCGAAAC
1 CCCAAAC
*
1255466 CCTAAAC
1 CCCAAAC
*
1255473 CCGAAAC
1 CCCAAAC
*
1255480 CCGAAAC
1 CCCAAAC
*
1255487 CCGAAA-
1 CCCAAAC
*
1255493 CCCGAA-
1 CCCAAAC
*
1255499 CCCGAAC
1 CCCAAAC
*
1255506 CCGAAAC
1 CCCAAAC
*
1255513 ACCTAAAC
1 -CCCAAAC
*
1255521 CCGAAAC
1 CCCAAAC
1255528 CCCGAAAAC
1 CCC--AAAC
*
1255537 CCGAAA-
1 CCCAAAC
1255543 CCCAAA-
1 CCCAAAC
* *
1255549 CCTAAAA
1 CCCAAAC
1255556 CCCAAAC
1 CCCAAAC
*
1255563 CCTAAAC
1 CCCAAAC
*
1255570 CCTAAAAC
1 CC-CAAAC
*
1255578 CCTAAAC
1 CCCAAAC
*
1255585 CCGAAAC
1 CCCAAAC
* *
1255592 CCGACAC
1 CCCAAAC
1255599 CCTC-AAC
1 CC-CAAAC
1255606 CCTC--AC
1 CC-CAAAC
* *
1255612 CACGAA-
1 CCCAAAC
*
1255618 CCCGAAC
1 CCCAAAC
1255625 CCTC-AAC
1 CC-CAAAC
1255632 CCTC-AA-
1 CC-CAAAC
* *
1255638 CCCTACC
1 CCCAAAC
1255645 CCTCAAAC
1 CC-CAAAC
1255653 CCTACAAAC
1 CC--CAAAC
*
1255662 CCTAAAC
1 CCCAAAC
*
1255669 ACCGAAAC
1 -CCCAAAC
*
1255677 CCTAAAAC
1 CC-CAAAC
*
1255685 CCGAAAC
1 CCCAAAC
* *
1255692 CCTAACC
1 CCCAAAC
1255699 CCCTAAAC
1 CCC-AAAC
*
1255707 CCGAAAC
1 CCCAAAC
*
1255714 CCTAAAC
1 CCCAAAC
*
1255721 CCTAAAC
1 CCCAAAC
*
1255728 CCGAAAC
1 CCCAAAC
1255735 CCCTAAAC
1 CCC-AAAC
*
1255743 CCTAAA-
1 CCCAAAC
*
1255749 CCGAAAC
1 CCCAAAC
*
1255756 ACCAAAC
1 CCCAAAC
*
1255763 CCTAAACC
1 CCCAAA-C
1255771 CTCCACCACAC
1 C-CCA--A-AC
*
1255782 CCGAAAC
1 CCCAAAC
*
1255789 CCTACAA-
1 CCCA-AAC
*
1255796 CCCTAA-
1 CCCAAAC
*
1255802 CCCTAAC
1 CCCAAAC
*
1255809 CCGCCAA-
1 CC-CAAAC
*
1255816 CCCTAAC
1 CCCAAAC
1255823 CCCTACAAC
1 CCC-A-AAC
*
1255832 CCGAAAC
1 CCCAAAC
1255839 CCCTAAAC
1 CCC-AAAC
*
1255847 CCGAAACC
1 CCCAAA-C
*
1255855 CCCGAAC
1 CCCAAAC
*
1255862 CCGAAA-
1 CCCAAAC
*
1255868 CCTAAA-
1 CCCAAAC
*
1255874 CCCTAA-
1 CCCAAAC
*
1255880 CCCGAAC
1 CCCAAAC
*
1255887 CCGAAAC
1 CCCAAAC
*
1255894 CCGAAAC
1 CCCAAAC
*
1255901 CCTAAA-
1 CCCAAAC
*
1255907 CACAAA-
1 CCCAAAC
*
1255913 CCGAAAC
1 CCCAAAC
*
1255920 CCGAAAC
1 CCCAAAC
1255927 CCTC-AA-
1 CC-CAAAC
*
1255933 CCCGAAC
1 CCCAAAC
1255940 CCCGAAAC
1 CCC-AAAC
*
1255948 CCTAAA-
1 CCCAAAC
1255954 -CC-AAC
1 CCCAAAC
*
1255959 CCGAAA-
1 CCCAAAC
*
1255965 CCCAACCC
1 CCCAA-AC
1255973 CCGCAAAC
1 CC-CAAAC
1255981 CCGCAAA-
1 CC-CAAAC
*
1255988 CCTAAA-
1 CCCAAAC
1255994 -CC-AAC
1 CCCAAAC
*
1255999 CCTAAAAAC
1 CC--CAAAC
*
1256008 CCGAACAC
1 CCCAA-AC
* *
1256016 CCGAAAA
1 CCCAAAC
*
1256023 CCGAAAC
1 CCCAAAC
*
1256030 CCGAAAAC
1 CC-CAAAC
*
1256038 CCAACAAC
1 CCCA-AAC
*
1256046 CACAAA-
1 CCCAAAC
*
1256052 CACAAAC
1 CCCAAAC
*
1256059 CCTAAAC
1 CCCAAAC
*
1256066 CCGAAA-
1 CCCAAAC
*
1256072 CCCGAAC
1 CCCAAAC
*
1256079 CCTAAAC
1 CCCAAAC
*
1256086 CCGAAA-
1 CCCAAAC
**
1256092 -AAAAAC
1 CCCAAAC
1256098 CCCGAAAC
1 CCC-AAAC
*
1256106 AACC--AC
1 -CCCAAAC
*
1256112 CCCGGAAC
1 CCC-AAAC
*
1256120 CCTAAAC
1 CCCAAAC
* *
1256127 CCGACA-
1 CCCAAAC
* *
1256133 CCCTACC
1 CCCAAAC
*
1256140 CCCGAAC
1 CCCAAAC
1256147 CCCAAA-
1 CCCAAAC
*
1256153 --GAAAC
1 CCCAAAC
1256158 CCTC-AA-
1 CC-CAAAC
*
1256164 CCCTAAC
1 CCCAAAC
*
1256171 CCTAAAC
1 CCCAAAC
*
1256178 CCTAAAC
1 CCCAAAC
*
1256185 CCGAAAC
1 CCCAAAC
*
1256192 CCGAAAC
1 CCCAAAC
*
1256199 CCGAAAC
1 CCCAAAC
*
1256206 CCTAAAC
1 CCCAAAC
1256213 CCCAAAAAC
1 CCC--AAAC
*
1256222 CCGAAAC
1 CCCAAAC
* *
1256229 CCTAAAA
1 CCCAAAC
*
1256236 CCCGAAC
1 CCCAAAC
1256243 CCCAAAC
1 CCCAAAC
1256250 CCC-AAC
1 CCCAAAC
*
1256256 CCCAACC
1 CCCAAAC
1256263 CCCAAA-
1 CCCAAAC
1256269 CCCAAA-
1 CCCAAAC
1256275 CCCAAAC
1 CCCAAAC
*
1256282 CCCACA-
1 CCCAAAC
*
1256288 CCCGAAC
1 CCCAAAC
1256295 CCCAAAC
1 CCCAAAC
*
1256302 CCCACAGC
1 CCCA-AAC
*
1256310 CCGCAACC
1 CC-CAAAC
1256318 CCCAAAC
1 CCCAAAC
1256325 CCCAAA-
1 CCCAAAC
*
1256331 --AAAAC
1 CCCAAAC
1256336 CCC-AAC
1 CCCAAAC
*
1256342 CCCCAAC
1 CCCAAAC
1256349 ACCC-AAC
1 -CCCAAAC
1256356 CCCAAAC
1 CCCAAAC
1256363 CCCAAA-
1 CCCAAAC
*
1256369 CCCACA-
1 CCCAAAC
1256375 CCC-AAC
1 CCCAAAC
1256381 CCCAAAC
1 CCCAAAC
1256388 CCC-AAC
1 CCCAAAC
1256394 CCCAAAC
1 CCCAAAC
1256401 CCCAAAC
1 CCCAAAC
1256408 CCC--AC
1 CCCAAAC
*
1256413 CCCAACC
1 CCCAAAC
1256420 CCCAAAC
1 CCCAAAC
1256427 CCC-AAC
1 CCCAAAC
1256433 CCCAACAC
1 CCCAA-AC
*
1256441 CCC-ACC
1 CCCAAAC
1256447 CCCAAACCC
1 CCCAAA--C
1256456 CCCAAAC
1 CCCAAAC
*
1256463 CCCACAC
1 CCCAAAC
1256470 CCCAAAC
1 CCCAAAC
1256477 CCC-AAC
1 CCCAAAC
1256483 CCCTAAAC
1 CCC-AAAC
1256491 CCCAAAC
1 CCCAAAC
1256498 CCCAAAC
1 CCCAAAC
*
1256505 CCCCAAC
1 CCCAAAC
1256512 CCCAAAC
1 CCCAAAC
1256519 CCCAAAC
1 CCCAAAC
*
1256526 CCCAACC
1 CCCAAAC
1256533 CCCAAAC
1 CCCAAAC
1256540 CCCAAAC
1 CCCAAAC
*
1256547 CCCACAC
1 CCCAAAC
*
1256554 CCCCAAC
1 CCCAAAC
1256561 CCCAAAC
1 CCCAAAC
1256568 CCCAAAC
1 CCCAAAC
1256575 CCCAAAC
1 CCCAAAC
1256582 CCCAAAC
1 CCCAAAC
1256589 CCC-AAC
1 CCCAAAC
1256595 CCC-AAC
1 CCCAAAC
1256601 CCCAAAC
1 CCCAAAC
1256608 CCCACAAC
1 CCCA-AAC
1256616 CCCAAAC
1 CCCAAAC
1256623 CACC-AAC
1 C-CCAAAC
*
1256630 CCCCAAC
1 CCCAAAC
1256637 CCCA
1 CCCA
1256641 CCCCCAACCA
Statistics
Matches: 1229, Mismatches: 227, Indels: 248
0.72 0.13 0.15
Matches are distributed among these distances:
4 10 0.01
5 19 0.02
6 242 0.20
7 716 0.58
8 175 0.14
9 46 0.04
10 17 0.01
11 3 0.00
12 1 0.00
ACGTcount: A:0.40, C:0.50, G:0.05, T:0.05
Consensus pattern (7 bp):
CCCAAAC
Found at i:1256715 original size:16 final size:17
Alignment explanation
Indices: 1256696--1256732 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
1256686 CCACCCCTAC
1256696 ACCCCT-AAACCCCCGA
1 ACCCCTAAAACCCCCGA
1256712 A-CCCTAAAACCCCCGA
1 ACCCCTAAAACCCCCGA
1256728 ACCCC
1 ACCCC
1256733 GAACCCCGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 4 0.21
16 12 0.63
17 3 0.16
ACGTcount: A:0.32, C:0.57, G:0.05, T:0.05
Consensus pattern (17 bp):
ACCCCTAAAACCCCCGA
Found at i:1256734 original size:7 final size:7
Alignment explanation
Indices: 1256722--1256983 Score: 211
Period size: 7 Copynumber: 37.6 Consensus size: 7
1256712 ACCCTAAAAC
1256722 CCCCGAA
1 CCCCGAA
1256729 CCCCGAA
1 CCCCGAA
1256736 CCCCGAA
1 CCCCGAA
1256743 CACCCG-A
1 C-CCCGAA
1256750 CCCCG-A
1 CCCCGAA
1256756 CCCCGAA
1 CCCCGAA
1256763 CCCCGAA
1 CCCCGAA
1256770 -CCCGAACAA
1 CCCCG---AA
1256779 CCCCGAA
1 CCCCGAA
1256786 CCGCCGAA
1 CC-CCGAA
*
1256794 CACCGAA
1 CCCCGAA
** *
1256801 CATCAAA
1 CCCCGAA
*
1256808 ACCCGAA
1 CCCCGAA
**
1256815 CCCTAAA
1 CCCCGAA
1256822 CCCC-AA
1 CCCCGAA
*
1256828 ACCC-AA
1 CCCCGAA
1256834 -CCCGAA
1 CCCCGAA
*
1256840 ACCCGAA
1 CCCCGAA
1256847 -CCCGTAAAA
1 CCCCG---AA
*
1256856 ACCCGAA
1 CCCCGAA
* **
1256863 CACTTAA
1 CCCCGAA
*
1256870 ACCCGAA
1 CCCCGAA
*
1256877 CCCCTAA
1 CCCCGAA
1256884 --CC-AA
1 CCCCGAA
1256888 CCCCGGAA
1 CCCC-GAA
1256896 CCCCGAA
1 CCCCGAA
**
1256903 CCCTAAA
1 CCCCGAA
1256910 CCCCGAA
1 CCCCGAA
1256917 CCCCGAA
1 CCCCGAA
1256924 CCCCGAA
1 CCCCGAA
1256931 CCCCGAA
1 CCCCGAA
1256938 CCCCGAA
1 CCCCGAA
1256945 CCCCGAA
1 CCCCGAA
*
1256952 CCCGGAA
1 CCCCGAA
1256959 CCCCGAA
1 CCCCGAA
1256966 CCCCGAA
1 CCCCGAA
1256973 CCCCGAA
1 CCCCGAA
1256980 CCCC
1 CCCC
1256984 TAAAACTTAA
Statistics
Matches: 210, Mismatches: 28, Indels: 34
0.77 0.10 0.12
Matches are distributed among these distances:
4 2 0.01
5 5 0.02
6 29 0.14
7 146 0.70
8 16 0.08
9 4 0.02
10 8 0.04
ACGTcount: A:0.34, C:0.52, G:0.12, T:0.03
Consensus pattern (7 bp):
CCCCGAA
Found at i:1256919 original size:21 final size:21
Alignment explanation
Indices: 1256333--1256983 Score: 240
Period size: 21 Copynumber: 31.3 Consensus size: 21
1256323 ACCCCAAAAA
*
1256333 AACCCC-AACCCCCAACACCC-
1 AACCCCGAACCCCGAAC-CCCG
* *
1256353 AACCCCAAACCCC-AAACCC-
1 AACCCCGAACCCCGAACCCCG
*
1256372 -ACACCC-AACCCCAAACCCC-
1 AAC-CCCGAACCCCGAACCCCG
* *
1256391 AACCCCAAACCCCAAACCCC-
1 AACCCCGAACCCCGAACCCCG
*
1256411 -ACCCC-AACCCCCAAACCCC-
1 AACCCCGAA-CCCCGAACCCCG
* * *
1256430 AACCCC-AACACCCCACCCCCA
1 AACCCCGAAC-CCCGAACCCCG
* *
1256451 AACCCCCCAAACCCC-ACACCCCA
1 AA--CCCCGAACCCCGA-ACCCCG
* *
1256474 AACCCC-AACCCCTAAACCCCA
1 AACCCCGAACCCC-GAACCCCG
* * *
1256495 AACCCCAAACCCCCAACCCCA
1 AACCCCGAACCCCGAACCCCG
* *
1256516 AACCCCAAACCCC-AACCCCCA
1 AACCCCGAACCCCGAA-CCCCG
* *
1256537 AACCCCAAACCCC-ACACCCCC
1 AACCCCGAACCCCGA-ACCCCG
* * *
1256558 AACCCCAAACCCCAAACCCCA
1 AACCCCGAACCCCGAACCCCG
*
1256579 AACCCCAAACCCC-AACCCC-
1 AACCCCGAACCCCGAACCCCG
* * *
1256598 AACCCCAAACCCCACAACCCCA
1 AACCCCGAACCCC-GAACCCCG
*
1256620 AACCACC-AACCCCCAACCCC-
1 AACC-CCGAACCCCGAACCCCG
* * *
1256640 -ACCCCCAA--CCAAACCCCCCTC
1 AACCCCGAACCCCGAA--CCCC-G
** * *
1256661 AACCCTAAACCCCTAAAACCC-
1 AACCCCGAACCCC-GAACCCCG
* * * *
1256682 TACACC--ACCCCTACACCCCTA
1 AACCCCGAACCCCGA-ACCCC-G
**
1256703 AACCCCCGAACCCTAAAACCCCCG
1 AA-CCCCGAACCC-CGAA-CCCCG
1256727 AACCCCGAACCCCGAACACCCG
1 AACCCCGAACCCCGAAC-CCCG
1256749 -ACCCCG-ACCCCGAACCCCG
1 AACCCCGAACCCCGAACCCCG
1256768 AA-CCCGAACAACCCCGAACCGCCG
1 AACCCCG---AACCCCGAACC-CCG
* ** * *
1256792 AACACCGAACATCAAAACCCG
1 AACCCCGAACCCCGAACCCCG
** *
1256813 AACCCTAAACCCC-AAACCC-
1 AACCCCGAACCCCGAACCCCG
*
1256832 AA-CCCGAAACCCGAA-CCCG
1 AACCCCGAACCCCGAACCCCG
* * ** *
1256851 TAAAAACCCGAACACTTAAACCCG
1 ---AACCCCGAACCCCGAACCCCG
*
1256875 AACCCCTAA--CC-AACCCCGG
1 AACCCCGAACCCCGAACCCC-G
**
1256894 AACCCCGAACCCTAAACCCCG
1 AACCCCGAACCCCGAACCCCG
1256915 AACCCCGAACCCCGAACCCCG
1 AACCCCGAACCCCGAACCCCG
*
1256936 AACCCCGAACCCCGAACCCGG
1 AACCCCGAACCCCGAACCCCG
1256957 AACCCCGAACCCCGAACCCCG
1 AACCCCGAACCCCGAACCCCG
1256978 AACCCC
1 AACCCC
1256984 TAAAACTTAA
Statistics
Matches: 521, Mismatches: 51, Indels: 117
0.76 0.07 0.17
Matches are distributed among these distances:
17 4 0.01
18 28 0.05
19 84 0.16
20 68 0.13
21 207 0.40
22 50 0.10
23 48 0.09
24 21 0.04
25 11 0.02
ACGTcount: A:0.35, C:0.57, G:0.05, T:0.02
Consensus pattern (21 bp):
AACCCCGAACCCCGAACCCCG
Found at i:1258245 original size:21 final size:22
Alignment explanation
Indices: 1258220--1258275 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
1258210 TAGCCTTGAC
1258220 CATGCATTTTTTTATTATG-TT
1 CATGCATTTTTTTATTATGTTT
1258241 CATGCATTTTTTTTATTATGTTT
1 CATGCA-TTTTTTTATTATGTTT
1258264 CATG--TTTTTTTA
1 CATGCATTTTTTTA
1258276 ACATATCCAG
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.24
21 6 0.18
22 13 0.39
23 6 0.18
ACGTcount: A:0.18, C:0.09, G:0.09, T:0.64
Consensus pattern (22 bp):
CATGCATTTTTTTATTATGTTT
Found at i:1258254 original size:22 final size:23
Alignment explanation
Indices: 1258220--1258274 Score: 82
Period size: 21 Copynumber: 2.6 Consensus size: 23
1258210 TAGCCTTGAC
1258220 CATGCA-TTTTTTTATTATG-TT
1 CATGCATTTTTTTTATTATGTTT
1258241 CATGCATTTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
1258264 CATG--TTTTTTT
1 CATGCATTTTTTT
1258275 AACATATCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
21 13 0.41
22 13 0.41
23 6 0.19
ACGTcount: A:0.16, C:0.09, G:0.09, T:0.65
Consensus pattern (23 bp):
CATGCATTTTTTTTATTATGTTT
Found at i:1260566 original size:8 final size:7
Alignment explanation
Indices: 1260541--1260961 Score: 112
Period size: 7 Copynumber: 60.6 Consensus size: 7
1260531 ACGTCGCGAC
1260541 AACCCTA
1 AACCCTA
1260548 AACCCTA
1 AACCCTA
1260555 AACCCGTA
1 AACCC-TA
1260563 AACCC-A
1 AACCCTA
*
1260569 AACCCCA
1 AACCCTA
1260576 AACCC-A
1 AACCCTA
* *
1260582 AGCCCCA
1 AACCCTA
*
1260589 AACCCCA
1 AACCCTA
* *
1260596 AGCCCCA
1 AACCCTA
* *
1260603 AGCCCCA
1 AACCCTA
* *
1260610 AGCCCCA
1 AACCCTA
* *
1260617 AGCCCCA
1 AACCCTA
*
1260624 AACCCCA
1 AACCCTA
1260631 AACCC-A
1 AACCCTA
1260637 CCCAA-CC-A
1 ---AACCCTA
*
1260645 AACCCCA
1 AACCCTA
*
1260652 AACCCCCA
1 AA-CCCTA
*
1260660 AACCCCA
1 AACCCTA
1260667 AACTCCTAA
1 AAC-CCT-A
*
1260676 AACCATA
1 AACCCTA
1260683 AACCCTA
1 AACCCTA
1260690 AACCCTA
1 AACCCTA
*
1260697 ACCCCTA
1 AACCCTA
1260704 AA-CCTA
1 AACCCTA
*
1260710 AATCC-A
1 AACCCTA
1260716 AACCC-A
1 AACCCTA
*
1260722 ACCCCCTA
1 A-ACCCTA
*
1260730 ACCCCT-
1 AACCCTA
1260736 AACCC--
1 AACCCTA
1260741 AACCC-A
1 AACCCTA
1260747 AA-CCTCA
1 AACCCT-A
1260754 AA-CCTCA
1 AACCCT-A
**
1260761 AACTATA
1 AACCCTA
1260768 AACCCTA
1 AACCCTA
*
1260775 AACCCCA
1 AACCCTA
*
1260782 AACCCCA
1 AACCCTA
1260789 AA-CCTCA
1 AACCCT-A
*
1260796 AA-CCTC
1 AACCCTA
*
1260802 AACCCCA
1 AACCCTA
*
1260809 AACCCCCAA
1 AA--CCCTA
*
1260818 ACACCCCA
1 A-ACCCTA
*
1260826 ACCCCT-
1 AACCCTA
*
1260832 AACCTCCA
1 AACC-CTA
*
1260840 ACCCCTA
1 AACCCTA
1260847 AACCCCTA
1 AA-CCCTA
*
1260855 ACCCCTA
1 AACCCTA
* *
1260862 ACCCCCA
1 AACCCTA
*
1260869 AACCCCA
1 AACCCTA
1260876 AACCACTA
1 AACC-CTA
* *
1260884 ACCCCAA
1 AACCCTA
*
1260891 AACCTTAA
1 AACCCT-A
1260899 AACCCT-
1 AACCCTA
1260905 AA-CCTA
1 AACCCTA
*
1260911 AACCCCA
1 AACCCTA
*
1260918 AACCCCA
1 AACCCTA
*
1260925 AA-CTTA
1 AACCCTA
*
1260931 AA-CCTT
1 AACCCTA
*
1260937 AATCCTA
1 AACCCTA
*
1260944 AA-CCTT
1 AACCCTA
1260950 AACCCTTA
1 AACCC-TA
1260958 AACC
1 AACC
1260962 TTAATTTTAA
Statistics
Matches: 333, Mismatches: 48, Indels: 65
0.75 0.11 0.15
Matches are distributed among these distances:
5 12 0.04
6 57 0.17
7 198 0.59
8 54 0.16
9 11 0.03
10 1 0.00
ACGTcount: A:0.40, C:0.49, G:0.01, T:0.10
Consensus pattern (7 bp):
AACCCTA
Found at i:1260721 original size:85 final size:84
Alignment explanation
Indices: 1260628--1260879 Score: 212
Period size: 87 Copynumber: 2.9 Consensus size: 84
1260618 GCCCCAAACC
1260628 CCAAACCC-ACCCAACCAAACCCC-AAACC-CCCAAACCCCAAACTCCTAAAACCATAAACCCTA
1 CCAAACCCAACCC--CCAAACCCCTAAACCACCCAAACCCCAAA--CCTAAAACCATAAACCCTA
*
1260690 AA-CCCTAACCCCTAAACCTAAAT
62 AACCCCAAACCCC-AAACCTAAAT
* * * * *
1260713 CCAAACCCAACCCCCTAACCCCTAACCCAACCCAAACCTCAAACCTCAAACTATAAACCCTAAAC
1 CCAAACCCAACCCCCAAACCCCTAAACC-ACCCAAACCCCAAACCTAAAACCATAAACCCTAAAC
*
1260778 CCCAAACCCCAAACCTCAAAC
65 CCCAAACCCCAAACCT-AAAT
* * * * * * *
1260799 CTCAACCCCAAACCCCCAAACACCC-CAA-C-CCCTAACCTCCAACCCCTAAACCCCTAACCCCT
1 C-CAAACCC-AACCCCCAAAC-CCCTAAACCACCCAAACC-CCAA-ACCTAAAACCATAAACCCT
*
1260861 AACCCCCAAACCCCAAACC
61 AAACCCCAAACCCCAAACC
1260880 ACTAACCCCA
Statistics
Matches: 136, Mismatches: 20, Indels: 20
0.77 0.11 0.11
Matches are distributed among these distances:
84 8 0.06
85 44 0.32
86 20 0.15
87 50 0.37
88 11 0.08
89 3 0.02
ACGTcount: A:0.40, C:0.51, G:0.00, T:0.09
Consensus pattern (84 bp):
CCAAACCCAACCCCCAAACCCCTAAACCACCCAAACCCCAAACCTAAAACCATAAACCCTAAACC
CCAAACCCCAAACCTAAAT
Found at i:1260816 original size:35 final size:34
Alignment explanation
Indices: 1260541--1260927 Score: 190
Period size: 35 Copynumber: 11.3 Consensus size: 34
1260531 ACGTCGCGAC
* * *
1260541 AACCCTAAACCCTAAACCCGTAAACC-CAAACCCCA
1 AACCCCAAACCCCAAACCC-CAAACCTC-AACCCCA
* * *
1260576 AA-CCCAAGCCCCAAACCCCAAGCCCCAAGCCCCA
1 AACCCCAAACCCCAAACCCCAAACCTCAA-CCCCA
* * *
1260610 AGCCCCAAGCCCCAAACCCCAAACC-CACCCAACCA
1 AACCCCAAACCCCAAACCCCAAACCTCAACC--CCA
* **
1260645 AACCCCAAACCCCCAAACCCCAAACTCCTAAAACCATA
1 AACCCCAAA-CCCCAAACCCCAAA--CCT-CAACCCCA
* * **
1260683 AACCCTAAA-CCCTAACCCCTAAACCT-AAATCCA
1 AACCCCAAACCCCAAACCCC-AAACCTCAACCCCA
* * *
1260716 AA-CCCAACCCCCTAACCCCTAACC-CAA-CCCA
1 AACCCCAAACCCCAAACCCCAAACCTCAACCCCA
* * * * *
1260747 AACCTCAAACCTCAAA---C-TA--TAAACCCTA
1 AACCCCAAACCCCAAACCCCAAACCTCAACCCCA
*
1260775 AACCCCAAACCCCAAACCTCAAACCTCAACCCCA
1 AACCCCAAACCCCAAACCCCAAACCTCAACCCCA
* *
1260809 AACCCCCAAACACCCCAACCCCTAACCTCCAACCCCTA
1 AA-CCCCAAAC-CCCAAACCCCAAACCT-CAACCCC-A
* * * * *
1260847 AACCCCTAACCCCTAACCCCCAAACCCCAAACCACT
1 AACCCCAAACCCC-AAACCCCAAACCTC-AACCCCA
** * * *
1260883 AACCCCAAAACCTTAAAACCCTAACCTAAACCCCA
1 AACCCC-AAACCCCAAACCCCAAACCTCAACCCCA
1260918 AACCCCAAAC
1 AACCCCAAAC
1260928 TTAAACCTTA
Statistics
Matches: 267, Mismatches: 56, Indels: 59
0.70 0.15 0.15
Matches are distributed among these distances:
27 2 0.01
28 18 0.07
29 1 0.00
31 6 0.02
32 20 0.07
33 23 0.09
34 35 0.13
35 55 0.21
36 55 0.21
37 35 0.13
38 14 0.05
40 3 0.01
ACGTcount: A:0.40, C:0.50, G:0.02, T:0.08
Consensus pattern (34 bp):
AACCCCAAACCCCAAACCCCAAACCTCAACCCCA
Found at i:1260853 original size:22 final size:21
Alignment explanation
Indices: 1260825--1260894 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 21
1260815 CAAACACCCC
1260825 AACCCCTAACCTCCAACCCCTA
1 AACCCCTAACC-CCAACCCCTA
*
1260847 AACCCCTAACCCCTAACCCCCA
1 AACCCCTAACCCC-AACCCCTA
* * *
1260869 AACCCCAAACCACTAACCCCAA
1 AACCCCTAACC-CCAACCCCTA
1260891 AACC
1 AACC
1260895 TTAAAACCCT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
21 2 0.05
22 39 0.93
23 1 0.02
ACGTcount: A:0.37, C:0.54, G:0.00, T:0.09
Consensus pattern (21 bp):
AACCCCTAACCCCAACCCCTA
Found at i:1260857 original size:15 final size:15
Alignment explanation
Indices: 1260644--1260894 Score: 100
Period size: 15 Copynumber: 17.3 Consensus size: 15
1260634 CCACCCAACC
* *
1260644 AAACCCCAAACCCCC
1 AAACCCCTAACCCCT
* *
1260659 AAACCCCAAACTCCT
1 AAACCCCTAACCCCT
* * *
1260674 AAAACCATAAACCCT
1 AAACCCCTAACCCCT
1260689 AAA-CCCTAACCCCT
1 AAACCCCTAACCCCT
**
1260703 AAA--CCTAAATCC-
1 AAACCCCTAACCCCT
1260715 AAA-CCC-AACCCCCT
1 AAACCCCTAA-CCCCT
*
1260729 -AACCCCTAACCCAACCC
1 AAACCCCTAA-CC--CCT
* * *
1260746 AAACCTCAAACCTC-
1 AAACCCCTAACCCCT
** *
1260760 AAA-CTATAAACCCT
1 AAACCCCTAACCCCT
*
1260774 AAACCCCAAACCCC-
1 AAACCCCTAACCCCT
* *
1260788 AAACCTC-AA-ACCT
1 AAACCCCTAACCCCT
* * *
1260801 CAACCCCAAACCCCC
1 AAACCCCTAACCCCT
*
1260816 AAACACCCCAACCCCT
1 AAAC-CCCTAACCCCT
1260832 -AACCTCC-AACCCCT
1 AAACC-CCTAACCCCT
1260846 AAACCCCTAACCCCT
1 AAACCCCTAACCCCT
* *
1260861 AACCCCCAAACCCC-
1 AAACCCCTAACCCCT
* *
1260875 AAACCACTAACCCCA
1 AAACCCCTAACCCCT
1260890 AAACC
1 AAACC
1260895 TTAAAACCCT
Statistics
Matches: 179, Mismatches: 39, Indels: 36
0.70 0.15 0.14
Matches are distributed among these distances:
12 7 0.04
13 26 0.15
14 50 0.28
15 76 0.42
16 9 0.05
17 4 0.02
18 7 0.04
ACGTcount: A:0.41, C:0.50, G:0.00, T:0.09
Consensus pattern (15 bp):
AAACCCCTAACCCCT
Found at i:1260906 original size:22 final size:21
Alignment explanation
Indices: 1260839--1260908 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 21
1260829 CCTAACCTCC
* * *
1260839 AACCCCTAAACCCCTAACCCCT
1 AACCCC-AAAACCCAAAACCCT
* *
1260861 AACCCCCAAACCCCAAACCACT
1 AACCCCAAAACCCAAAACC-CT
*
1260883 AACCCCAAAACCTTAAAACCCT
1 AACCCCAAAACC-CAAAACCCT
1260905 AACC
1 AACC
1260909 TAAACCCCAA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 9 0.23
22 25 0.64
23 5 0.13
ACGTcount: A:0.40, C:0.50, G:0.00, T:0.10
Consensus pattern (21 bp):
AACCCCAAAACCCAAAACCCT
Found at i:1260927 original size:14 final size:14
Alignment explanation
Indices: 1260541--1260927 Score: 217
Period size: 14 Copynumber: 27.7 Consensus size: 14
1260531 ACGTCGCGAC
* *
1260541 AACCCTAAACCCTA
1 AACCCCAAACCCCA
*
1260555 AACCCGTAAA-CCCA
1 AACCC-CAAACCCCA
1260569 AACCCCAAA-CCCA
1 AACCCCAAACCCCA
*
1260582 AGCCCCAAACCCCA
1 AACCCCAAACCCCA
* *
1260596 AGCCCCAAGCCCCA
1 AACCCCAAACCCCA
* *
1260610 AGCCCCAAGCCCCA
1 AACCCCAAACCCCA
1260624 AACCCCAAA-CCC-
1 AACCCCAAACCCCA
*
1260636 ACCCAACCAAACCCCA
1 AACC--CCAAACCCCA
1260652 AACCCCCAAACCCCA
1 AA-CCCCAAACCCCA
* **
1260667 AACTCCTAAAACCATA
1 AAC-CC-CAAACCCCA
* *
1260683 AACCCTAAA-CCCT
1 AACCCCAAACCCCA
*
1260696 AACCCCTAAA-CCTA
1 AACCCC-AAACCCCA
*
1260710 AA-TCCAAA-CCCA
1 AACCCCAAACCCCA
* * *
1260722 ACCCCCTAACCCCT
1 AACCCCAAACCCCA
1260736 AA-CCC-AA-CCCA
1 AACCCCAAACCCCA
* *
1260747 AACCTCAAACCTCA
1 AACCCCAAACCCCA
*** *
1260761 AACTATAAACCCTA
1 AACCCCAAACCCCA
1260775 AACCCCAAACCCCA
1 AACCCCAAACCCCA
* *
1260789 AACCTCAAACCTC-
1 AACCCCAAACCCCA
1260802 AACCCCAAACCCCCA
1 AACCCCAAA-CCCCA
* *
1260817 AACACCCCAACCCCT
1 AAC-CCCAAACCCCA
1260832 AACCTCC-AACCCCTA
1 AACC-CCAAACCCC-A
*
1260847 AACCCCTAACCCCTA
1 AACCCCAAACCCC-A
*
1260862 ACCCCCAAACCCCA
1 AACCCCAAACCCCA
* *
1260876 AACCACTAACCCCAA
1 AACCCCAAACCCC-A
** * *
1260891 AACCTTAAAACCCT
1 AACCCCAAACCCCA
*
1260905 AA-CCTAAACCCCA
1 AACCCCAAACCCCA
1260918 AACCCCAAAC
1 AACCCCAAAC
1260928 TTAAACCTTA
Statistics
Matches: 292, Mismatches: 58, Indels: 46
0.74 0.15 0.12
Matches are distributed among these distances:
11 5 0.02
12 14 0.05
13 53 0.18
14 135 0.46
15 68 0.23
16 15 0.05
17 2 0.01
ACGTcount: A:0.40, C:0.50, G:0.02, T:0.08
Consensus pattern (14 bp):
AACCCCAAACCCCA
Found at i:1260945 original size:13 final size:14
Alignment explanation
Indices: 1260927--1260966 Score: 64
Period size: 13 Copynumber: 2.9 Consensus size: 14
1260917 AAACCCCAAA
1260927 CTTAAACCTTAATC
1 CTTAAACCTTAATC
*
1260941 C-TAAACCTTAACC
1 CTTAAACCTTAATC
1260954 CTTAAACCTTAAT
1 CTTAAACCTTAAT
1260967 TTTAAACCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.38, C:0.30, G:0.00, T:0.33
Consensus pattern (14 bp):
CTTAAACCTTAATC
Found at i:1260963 original size:7 final size:7
Alignment explanation
Indices: 1260927--1260965 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
1260917 AAACCCCAAA
1260927 CTTAAAC
1 CTTAAAC
*
1260934 CTTAATC
1 CTTAAAC
1260941 C-TAAAC
1 CTTAAAC
*
1260947 CTTAACC
1 CTTAAAC
1260954 CTTAAAC
1 CTTAAAC
1260961 CTTAA
1 CTTAA
1260966 TTTTAAACCC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 5 0.19
7 22 0.81
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (7 bp):
CTTAAAC
Found at i:1260973 original size:13 final size:13
Alignment explanation
Indices: 1260927--1260989 Score: 63
Period size: 13 Copynumber: 4.8 Consensus size: 13
1260917 AAACCCCAAA
1260927 CTTAAACCTTAAT
1 CTTAAACCTTAAT
* *
1260940 CCTAAACCTTAACC
1 CTTAAACCTTAA-T
1260954 CTTAAACCTTAAT
1 CTTAAACCTTAAT
* ** *
1260967 TTTAAACCCAAAA
1 CTTAAACCTTAAT
1260980 CTTAAACCTT
1 CTTAAACCTT
1260990 TAAGTCTATC
Statistics
Matches: 38, Mismatches: 11, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
13 27 0.71
14 11 0.29
ACGTcount: A:0.40, C:0.29, G:0.00, T:0.32
Consensus pattern (13 bp):
CTTAAACCTTAAT
Done.