Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1162
Parameters: 2 7 7 80 10 50 1000
Length:  25233

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4191--4267
1
77.0
1
73
0
64
87
9
3
0
0.67
4191--4270
17
4.8
16
83
10
90
86
10
3
0
0.69
4209--4293
5
16.8
5
79
18
63
82
16
1
0
0.73
4191--4267
20
4.1
18
78
17
75
87
9
3
0
0.67
4206--4294
9
9.8
9
83
11
83
83
15
1
0
0.71
4191--4267
21
3.9
19
80
16
86
87
9
3
0
0.67
4220--4291
3
25.7
3
80
10
55
80
19
0
0
0.71
5734--5925
29
6.8
28
81
7
208
32
29
17
20
1.96
5731--5971
85
2.8
85
80
7
249
34
29
16
20
1.94
5728--5971
28
8.6
28
81
6
224
33
29
15
20
1.94
5993--6234
52
4.8
51
80
9
277
22
26
19
31
1.98
5994--6177
95
1.9
95
87
4
273
22
26
20
30
1.98
6871--6934
10
6.2
10
80
12
67
28
4
7
59
1.46
6871--6934
31
2.1
31
91
5
103
28
4
7
59
1.46
6871--6934
21
3.1
21
78
10
78
28
4
7
59
1.46
7089--7155
33
2.0
33
85
0
89
32
10
14
41
1.80
7196--7220
13
1.9
13
100
0
50
32
16
16
36
1.90
10980--11046
37
1.9
35
88
11
102
29
25
11
32
1.92
11504--11529
13
2.0
13
100
0
52
30
15
15
38
1.88
11484--11547
32
2.0
33
90
3
103
28
14
15
42
1.86
12237--12280
21
2.1
21
83
8
54
25
31
4
38
1.76
13445--13469
13
1.9
13
100
0
50
32
16
16
36
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17188--17213
13
2.0
13
100
0
52
30
15
15
38
1.88
17168--17231
32
2.0
33
90
3
103
28
14
15
42
1.86
21794--21856
23
2.8
22
75
17
58
77
0
15
6
0.96
21807--21872
23
3.0
22
78
8
62
72
1
15
10
1.18

Tables:   1

The End!