Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1163
Parameters: 2 7 7 80 10 50 1000
Length:  40650

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1623--1712
20
4.6
19
76
5
72
32
20
12
35
1.89
4173--4206
17
2.0
17
94
0
59
38
2
11
47
1.55
4183--4238
17
3.4
17
73
14
53
39
5
16
39
1.71
9668--9700
15
2.1
16
88
5
50
18
12
0
69
1.18
9711--9740
13
2.3
13
94
0
51
53
0
0
46
1.00
10054--10098
19
2.4
19
85
10
58
51
0
0
48
1.00
11246--11316
2
36.0
2
81
2
72
42
0
7
50
1.29
11666--11706
12
3.3
13
83
6
50
75
9
0
14
1.04
11929--11985
4
14.2
4
81
0
51
43
0
8
47
1.34
11929--11985
6
9.5
6
76
0
51
43
0
8
47
1.34
11933--11996
20
3.2
20
86
0
92
40
0
12
46
1.42
11937--12004
20
3.8
17
75
21
59
39
0
14
45
1.45
15295--15337
21
2.0
22
81
4
52
44
2
11
41
1.53
17275--17414
52
2.7
52
89
0
226
30
12
12
45
1.79
19598--19803
97
2.1
97
80
5
229
25
22
14
37
1.92
22090--22135
18
2.6
18
86
6
58
50
4
17
28
1.65
22092--22133
17
2.3
18
80
8
50
50
4
19
26
1.67
23530--23584
27
2.0
29
82
7
69
16
5
21
56
1.60
32065--32098
16
2.2
16
89
5
52
55
0
41
2
1.15
32071--32115
21
2.2
20
84
8
54
46
2
44
6
1.42

Tables:   1

The End!