Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1166
Parameters: 2 7 7 80 10 50 1000
Length:  40609

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2777--2835
15
3.7
16
77
20
61
57
1
0
40
1.09
2830--3021
3
65.3
3
63
22
61
61
0
0
38
0.96
2843--3022
11
18.8
10
67
26
97
60
0
0
39
0.97
2830--3021
64
3.1
63
77
19
197
61
0
0
38
0.96
2820--3021
43
4.5
44
77
19
179
61
0
0
38
0.96
3015--3053
21
1.9
20
94
5
69
58
0
10
30
1.31
3026--3074
13
3.6
13
80
20
64
57
0
10
32
1.32
3006--3082
28
2.7
29
91
6
129
59
0
9
31
1.28
3124--3158
10
3.4
11
84
15
56
48
5
0
45
1.26
3122--3159
20
1.9
20
100
0
76
50
5
0
44
1.24
3118--3160
20
2.3
18
85
14
68
51
4
0
44
1.22
3125--3170
19
2.3
20
88
3
67
50
4
0
45
1.21
8853--8883
15
2.1
15
100
0
62
19
12
0
67
1.22
10475--10525
16
3.2
16
88
0
84
25
13
9
50
1.72
12500--12526
12
2.2
12
100
0
54
62
0
22
14
1.31
13799--13889
9
10.6
9
70
21
61
58
0
3
38
1.15
13799--13854
17
3.2
17
90
7
78
58
0
3
37
1.15
13881--13943
24
2.6
24
92
0
108
47
3
6
42
1.44
14653--14703
16
3.2
16
88
0
84
25
13
9
50
1.72
25022--25054
13
2.8
12
90
9
50
72
9
6
12
1.26
27079--27112
15
2.3
15
100
0
68
38
0
0
61
0.96
31338--31396
15
3.7
16
77
20
61
57
1
0
40
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31391--31582
3
65.3
3
63
22
61
61
0
0
38
0.96
31404--31583
11
18.8
10
67
26
97
60
0
0
39
0.97
31391--31582
64
3.1
63
77
19
197
61
0
0
38
0.96
31381--31582
43
4.5
44
77
19
179
61
0
0
38
0.96
31576--31614
21
1.9
20
94
5
69
58
0
10
30
1.31
31587--31635
13
3.6
13
80
20
64
57
0
10
32
1.32
31567--31643
28
2.7
29
91
6
129
59
0
9
31
1.28
31673--31734
20
2.8
22
78
14
74
53
3
0
43
1.17
31685--31724
10
3.9
11
84
15
59
50
5
0
45
1.23
31683--31724
20
2.1
20
100
0
84
50
4
0
45
1.23
31686--31732
20
2.3
20
92
0
76
51
4
0
44
1.21
37418--37448
15
2.1
15
100
0
62
19
12
0
67
1.22

Tables:   1

The End!