Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1169
Parameters: 2 7 7 80 10 50 1000
Length:  27127

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4584--4618
2
17.5
2
100
0
70
51
0
0
48
1.00
6866--6891
4
6.5
4
100
0
52
76
23
0
0
0.78
7177--7217
15
2.8
14
92
7
64
63
0
0
36
0.95
7203--7270
28
2.4
28
81
16
77
39
2
1
55
1.24
7895--7966
16
4.1
17
68
23
51
55
1
1
41
1.17
7879--7990
37
2.9
37
80
9
109
54
1
0
42
1.17
7955--7998
23
2.0
21
83
16
54
54
0
2
43
1.12
8585--8643
26
2.2
27
96
3
111
49
0
0
50
1.00
8594--8650
26
2.2
26
93
0
96
47
1
1
49
1.22
8844--8876
16
2.0
17
94
5
59
42
0
0
57
0.98
9011--9054
23
1.9
23
86
9
63
38
2
2
56
1.24
12605--12641
6
6.0
6
93
6
65
32
0
32
35
1.58
12648--12702
6
9.2
6
95
0
101
32
16
34
16
1.91
12863--12930
22
2.9
22
72
24
59
25
5
1
67
1.21
12908--12937
4
7.5
4
92
0
51
23
0
3
73
0.98
13337--13412
22
3.5
22
75
21
70
52
0
1
46
1.08
17995--18113
36
3.3
36
96
0
220
23
15
20
40
1.91
22950--23001
19
3.1
18
74
23
58
57
1
9
30
1.42
22672--23228
293
1.9
293
96
0
1033
48
8
8
33
1.65
23430--23479
22
2.3
21
80
10
55
68
2
0
30
1.01
23462--23559
19
5.3
19
68
19
55
63
2
0
34
1.06
24012--24057
11
4.2
11
79
17
51
0
19
0
80
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24014--24056
8
5.2
8
83
10
52
0
16
0
83
0.64
24012--24056
19
2.4
18
85
10
63
0
17
0
82
0.68
24441--24485
11
4.1
11
86
11
56
33
0
0
66
0.92
24448--24506
20
2.8
21
84
10
75
38
0
0
61
0.96
24438--24509
20
3.8
20
72
27
59
40
0
0
59
0.97
24851--24898
16
3.2
16
77
17
57
52
0
0
47
1.00
24847--24972
29
4.1
28
74
16
92
52
0
3
44
1.17
25571--25641
28
2.5
27
76
15
72
59
2
0
38
1.12
25602--25663
21
2.9
21
73
22
56
53
4
0
41
1.22
25626--25686
26
2.4
25
76
17
63
54
3
3
39
1.33
25855--25919
29
2.2
29
83
0
85
47
3
1
47
1.27

Tables:   1

The End!