Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1170
Parameters: 2 7 7 80 10 50 1000
Length:  74508

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
873--902
2
15.0
2
100
0
60
50
0
50
0
1.00
3715--3752
19
2.0
19
85
10
51
50
0
0
50
1.00
3742--3766
13
1.9
13
100
0
50
40
0
0
60
0.97
3742--3783
15
2.9
15
86
6
52
50
0
0
50
1.00
4727--4773
3
15.3
3
95
4
85
68
0
0
31
0.90
4876--4919
3
14.7
3
100
0
88
31
0
0
68
0.90
5209--5255
15
3.2
15
78
3
51
36
14
6
42
1.72
5242--5328
45
1.9
45
83
0
111
32
13
14
39
1.86
11393--11425
16
2.1
16
100
0
66
6
12
39
42
1.67
13278--13305
2
14.0
2
100
0
56
50
0
0
50
1.00
15228--15260
16
2.1
15
94
5
57
66
0
0
33
0.92
15343--15415
21
3.2
23
72
18
71
50
0
0
49
1.00
15321--15415
49
2.0
49
86
11
137
48
1
0
50
1.07
21234--21294
15
4.1
15
83
6
70
32
0
1
65
1.02
21274--21320
14
3.2
15
85
8
62
48
0
0
51
1.00
21533--21576
23
2.0
23
86
8
65
45
0
0
54
0.99
21535--21591
28
2.1
27
83
9
71
47
0
0
52
1.00
21533--21577
21
2.1
21
84
8
56
46
0
0
53
1.00
25097--25134
8
4.9
8
87
6
51
63
0
0
36
0.95
25243--25298
12
4.8
12
80
8
71
28
0
1
69
0.98
26829--27006
38
4.7
38
87
0
230
28
14
29
27
1.95
30535--30688
38
4.1
38
93
0
245
25
14
31
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32060--32089
3
10.0
3
100
0
60
66
0
33
0
0.92
36251--36288
11
3.3
12
82
10
53
36
5
0
57
1.21
37822--37846
13
1.9
13
100
0
50
32
16
16
36
1.90
37855--37982
52
2.5
52
98
0
247
35
18
18
27
1.95
41077--41119
2
21.5
2
90
9
70
48
2
0
48
1.14
41846--41898
27
2.0
27
88
0
79
45
3
0
50
1.19
42596--42640
21
2.2
21
88
4
65
35
6
13
44
1.70
42848--42876
15
1.9
15
100
0
58
20
0
0
79
0.74
43170--43206
17
2.2
17
90
4
58
43
2
0
54
1.14
43252--43293
16
2.6
16
85
7
59
54
2
0
42
1.13
43558--43585
13
2.2
13
100
0
56
14
10
21
53
1.70
45118--45222
55
1.9
55
88
3
158
21
22
26
28
1.99
45384--45415
16
2.0
16
100
0
64
43
0
0
56
0.99
45428--45484
19
2.8
19
82
12
60
29
0
0
70
0.88
45421--45510
18
5.4
18
67
24
54
34
0
0
65
0.93
45433--45518
30
2.8
30
83
5
100
34
0
0
65
0.93
46086--46129
18
2.3
18
84
7
61
61
0
0
38
0.96
46091--46125
18
2.0
18
94
5
63
68
0
0
31
0.90
46123--46183
23
2.8
20
77
20
59
54
0
1
44
1.10
46189--46231
20
2.2
20
87
8
61
62
0
0
37
0.95
46273--46369
31
3.2
31
88
1
115
21
23
19
35
1.96
46762--46791
9
3.3
9
95
0
51
23
0
6
70
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46798--46833
10
3.5
10
92
3
54
44
0
0
55
0.99
47361--47411
26
2.0
24
88
7
75
37
0
0
62
0.95
59880--59922
14
3.0
14
82
3
50
30
0
0
69
0.88
60558--60601
20
2.1
20
87
8
61
25
4
2
68
1.20
62661--62751
36
2.6
36
80
14
95
57
0
2
40
1.11
62694--62801
33
3.2
33
77
9
103
58
0
0
40
1.04
63024--63089
11
5.9
11
79
10
62
31
3
1
63
1.19
63039--63079
12
3.4
12
83
10
57
29
0
0
70
0.87
63029--63089
23
2.7
23
80
12
72
31
1
1
65
1.12
63940--63980
3
13.7
3
85
10
57
36
2
60
0
1.10
72427--72519
47
2.0
45
91
8
152
31
23
13
31
1.94
72427--72498
24
3.0
24
69
15
69
30
25
15
29
1.96
74190--74234
18
2.5
17
78
7
54
46
2
2
48
1.26

Tables:   1

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