genome.fa.s1173.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1173
Parameters: 2 7 7 80 10 50 1000
Length:  68176

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311--439	52	2.5	52	84	3	188	30	30	11	27	1.92
450--670	51	4.3	51	82	5	214	30	26	11	31	1.92
496--670	52	3.4	51	83	8	205	32	26	10	30	1.90
604--804	107	1.9	108	82	5	255	28	27	13	29	1.95
3214--3256	15	2.9	15	86	3	61	60	4	0	34	1.17
4074--4152	41	2.0	40	87	2	113	39	11	29	20	1.87
4116--4340	81	2.8	81	75	2	211	48	12	19	20	1.80
4336--4422	41	2.1	41	80	4	95	39	9	28	22	1.85
10044--10448	28	14.7	28	85	6	533	23	16	30	29	1.96
10044--10448	57	7.3	57	86	7	534	23	16	30	29	1.96
10217--10448	75	2.9	76	87	9	324	22	16	31	29	1.96
11711--11752	22	2.0	22	90	4	68	2	11	9	76	1.12
26086--26132	20	2.5	19	86	13	62	23	21	10	44	1.83
30620--30714	20	4.8	20	85	7	122	28	15	12	43	1.84
30620--30714	40	2.4	40	92	0	154	28	15	12	43	1.84
33041--33184	50	2.8	51	81	8	177	30	21	11	36	1.89
33247--33354	28	3.8	28	79	6	103	21	28	21	28	1.98
33334--33449	51	2.3	51	86	3	153	33	22	9	34	1.86
33385--33565	78	2.3	78	86	0	227	29	22	13	34	1.92
33414--33602	78	2.4	78	83	1	234	30	24	13	31	1.93
44901--44953	20	2.7	20	88	11	74	30	18	13	37	1.89
44983--45056	19	3.7	19	85	5	76	37	18	14	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54611--54651	22	2.0	21	86	13	59	41	4	21	31	1.74
54783--54821	13	3.0	13	96	0	69	35	15	17	30	1.91
61007--61031	13	1.9	13	100	0	50	36	16	16	32	1.90
61785--61810	13	2.0	13	100	0	52	30	15	15	38	1.88
61849--61924	21	3.7	21	78	3	100	28	15	11	43	1.83
61870--61942	20	3.6	20	77	3	92	31	17	13	36	1.89
61849--61942	41	2.3	41	100	0	188	29	17	12	40	1.86
62523--62554	16	2.0	16	100	0	64	25	25	12	37	1.91
64404--64440	13	2.8	13	95	0	65	32	16	18	32	1.93
64429--64506	20	3.7	20	73	20	68	44	15	14	25	1.84
66519--66549	15	2.1	15	93	0	53	12	22	16	48	1.80

Tables:   1

The End!