Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1177

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3882
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26


Found at i:830 original size:10 final size:10

Alignment explanation


    Indices: 815--841  Score: 54
    Period size: 10  Copynumber: 2.7  Consensus size: 10

        805 TGCTAACTAA

                      
        815 GTTTTTGTTT
          1 GTTTTTGTTT

                      
        825 GTTTTTGTTT
          1 GTTTTTGTTT

                   
        835 GTTTTTG
          1 GTTTTTG

        842 CTTGATACAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   17  1.00

ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78


Consensus pattern (10 bp):   
GTTTTTGTTT
Done.