Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold118
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1286304
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 499 characters in sequence are not A, C, G, or T
File 6 of 8
Found at i:859764 original size:19 final size:18
Alignment explanation
Indices: 859713--859764 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
859703 TTCTTTGTGA
859713 AAGAAAA-AAAGAAAAAG
1 AAGAAAAGAAAGAAAAAG
*
859730 AAGAAAAGAAAAAAAAAG
1 AAGAAAAGAAAGAAAAAG
* *
859748 AATGAAAGGAATGAAAA
1 AA-GAAAAGAAAGAAAA
859765 TGAAAAAGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 7 0.24
18 11 0.38
19 11 0.38
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (18 bp):
AAGAAAAGAAAGAAAAAG
Found at i:860125 original size:12 final size:11
Alignment explanation
Indices: 860105--860150 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
860095 AAAAAGAGAA
860105 AAACCAAAAAG
1 AAACCAAAAAG
860116 AAACCAAAAAG
1 AAACCAAAAAG
**
860127 AAATGAAAAAAG
1 AAA-CCAAAAAG
860139 AAA--AAAAAG
1 AAACCAAAAAG
860148 AAA
1 AAA
860151 GGAAAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 9 0.28
11 14 0.44
12 9 0.28
ACGTcount: A:0.78, C:0.09, G:0.11, T:0.02
Consensus pattern (11 bp):
AAACCAAAAAG
Found at i:860145 original size:21 final size:22
Alignment explanation
Indices: 860110--860158 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 22
860100 GAGAAAAACC
*
860110 AAAAAGAAACCAAAAAGAAATGA
1 AAAAAGAAA-CAAAAAGAAAGGA
860133 AAAAAGAAA-AAAAAGAAAGGA
1 AAAAAGAAACAAAAAGAAAGGA
860154 AAAAA
1 AAAAA
860159 AAAGAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 16 0.64
23 9 0.36
ACGTcount: A:0.80, C:0.04, G:0.14, T:0.02
Consensus pattern (22 bp):
AAAAAGAAACAAAAAGAAAGGA
Found at i:860156 original size:11 final size:10
Alignment explanation
Indices: 860110--860165 Score: 51
Period size: 11 Copynumber: 5.3 Consensus size: 10
860100 GAGAAAAACC
*
860110 AAAAAGAAACC
1 AAAAAGAAA-G
860121 AAAAAGAAATG
1 AAAAAGAAA-G
860132 AAAAAAGAAA-
1 -AAAAAGAAAG
860142 AAAAAGAAAGG
1 AAAAAGAAA-G
*
860153 AAAAAAAAAG
1 AAAAAGAAAG
860163 AAA
1 AAA
860166 TAAATAATGC
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
9 9 0.23
10 4 0.10
11 17 0.44
12 9 0.23
ACGTcount: A:0.80, C:0.04, G:0.14, T:0.02
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:861360 original size:125 final size:125
Alignment explanation
Indices: 861089--861558 Score: 527
Period size: 125 Copynumber: 3.8 Consensus size: 125
861079 GAAGATGAAG
* * * * * * *
861089 AAACACTTTTCATTATCGTTTGACATGATGTTTCTTGCTCTAGTCAAACATCTTTTCGTT-CCGT
1 AAACTCTTTTCATTATCATTTGACATGATGGTTCTTACCCTGGTCAAACATCTTTTCATTCCCGT
* *
861153 TTGACTGTACCTAGTCAAACT-TTTTCATTCCAGTTTGACATGATGGTTCTCACCCTGGTC
66 TTGACTGTACTTGGTCAAACTCTTTTCATT-CAGTTTGACATGATGGTTCTCACCCTGGTC
* * * * *
861213 AAACATCATTCCCTTA-CTATTTGACATGATGGTTCTTACCCTGGTCAAATATCTTTTTATTCCC
1 AAAC-TCTTTTCATTATC-ATTTGACATGATGGTTCTTACCCTGGTCAAACATCTTTTCATTCCC
* ** * * * *
861277 GTTT-ACTGTACTTGGCCAAACTCTTTTCATTTTGGTTTGACGTGATAGTTCTCGCCCTAGTC
64 GTTTGACTGTACTTGGTCAAACTCTTTTCA-TTCAGTTTGACATGATGGTTCTCACCCTGGTC
* *
861339 AAACTCTTTTCATTATCATTTGACATGATGGTTCTTACCCTGGTCAAACATCTTTTCATTCACAT
1 AAACTCTTTTCATTATCATTTGACATGATGGTTCTTACCCTGGTCAAACATCTTTTCATTCCCGT
* * ** * *
861404 TTGACTATACTTGATCAAACTCTTTTCATTCAGTTTGACACAATGGTTCTAACCTTGGTC
66 TTGACTGTACTTGGTCAAACTCTTTTCATTCAGTTTGACATGATGGTTCTCACCCTGGTC
* * * * * *
861464 AAATTCTTTTTATTACCATTTGACATGATGGTAT-TCACCTTGGTCAAACATCTTTTCATTCTCG
1 AAACTCTTTTCATTATCATTTGACATGATGGT-TCTTACCCTGGTCAAACATCTTTTCATTCCCG
* *
861528 CTTGATTGTACTTGGTCAAACTCTTTTCATT
65 TTTGACTGTACTTGGTCAAACTCTTTTCATT
861559 TGATTTGACT
Statistics
Matches: 286, Mismatches: 52, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
124 5 0.02
125 215 0.75
126 64 0.22
127 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.42
Consensus pattern (125 bp):
AAACTCTTTTCATTATCATTTGACATGATGGTTCTTACCCTGGTCAAACATCTTTTCATTCCCGT
TTGACTGTACTTGGTCAAACTCTTTTCATTCAGTTTGACATGATGGTTCTCACCCTGGTC
Found at i:861361 original size:45 final size:45
Alignment explanation
Indices: 861293--861408 Score: 135
Period size: 45 Copynumber: 2.6 Consensus size: 45
861283 TGTACTTGGC
* ** * *
861293 CAAACTCTTTTCATTTTGGTTTGACGTGATAGTTCTCGCCCTAGT
1 CAAACTCTTTTCATTATCATTTGACATGATAGTTCTCACCCTAGT
* * *
861338 CAAACTCTTTTCATTATCATTTGACATGATGGTTCTTACCCTGGT
1 CAAACTCTTTTCATTATCATTTGACATGATAGTTCTCACCCTAGT
861383 CAAACATCTTTTCATTCA-CATTTGAC
1 CAAAC-TCTTTTCATT-ATCATTTGAC
861409 TATACTTGAT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
45 42 0.69
46 18 0.30
47 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.41
Consensus pattern (45 bp):
CAAACTCTTTTCATTATCATTTGACATGATAGTTCTCACCCTAGT
Found at i:861600 original size:34 final size:34
Alignment explanation
Indices: 861536--861602 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
861526 CGCTTGATTG
* * *
861536 TACTTGGTCAAACTCTTTTCATTTGATTTGACTA
1 TACTTGATCAAACTATTTTCATTAGATTTGACTA
861570 TACTTGATCAAACTATTTTCATCTAG-TTTGACT
1 TACTTGATCAAACTATTTTCAT-TAGATTTGACT
861603 TGATGGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 27 0.93
35 2 0.07
ACGTcount: A:0.25, C:0.18, G:0.10, T:0.46
Consensus pattern (34 bp):
TACTTGATCAAACTATTTTCATTAGATTTGACTA
Found at i:861691 original size:159 final size:159
Alignment explanation
Indices: 861379--861716 Score: 450
Period size: 159 Copynumber: 2.1 Consensus size: 159
861369 GTTCTTACCC
*
861379 TGGTCAAACATCTTTTCATTCACATTTGACTATACTTGATCAAACTCTTTTCATTCAGTTTGACA
1 TGGTCAAAC-TCTTTTCATTCACATTTGACTATACTTGATCAAACTATTTTCATTCAGTTTGACA
* *
861444 CAATGGTTCTAACCTTGGTCAAATTCTTTTTATTACCATTTGACATGATGGTATTCACCTTGGTC
65 CAATGGTTCTAACCTTGGTCAAA-TCTTTTTATTACCATTTGACATGATGGTATTCACATTAGTC
*
861509 AAACATCTTTTCATTCTCGCTTGATTGTACT
129 AAACATCTTTTCATTCTCGCTTGATTATACT
** *
861540 TGGTCAAACTCTTTTCATT-TGATTTGACTATACTTGATCAAACTATTTTCA-TCTAGTTTGACT
1 TGGTCAAACTCTTTTCATTCACATTTGACTATACTTGATCAAACTATTTTCATTC-AGTTTGACA
** * ** *
861603 TGATGGTT-TGGACCTTGGTCAAA-CTTGTTTCATTACCATTTGATGTGATGGTTTTCACATTAG
65 CAATGGTTCT-AACCTTGGTCAAATCTT-TTT-ATTACCATTTGACATGATGGTATTCACATTAG
861666 TCAAACATCTTTTCATTCTCGCTTGATTATACT
127 TCAAACATCTTTTCATTCTCGCTTGATTATACT
* * *
861699 TAGTTAAACTTTTTTCAT
1 TGGTCAAACTCTTTTCAT
861717 CTGCTTTAAT
Statistics
Matches: 157, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
157 3 0.02
158 6 0.04
159 129 0.82
160 10 0.06
161 9 0.06
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.44
Consensus pattern (159 bp):
TGGTCAAACTCTTTTCATTCACATTTGACTATACTTGATCAAACTATTTTCATTCAGTTTGACAC
AATGGTTCTAACCTTGGTCAAATCTTTTTATTACCATTTGACATGATGGTATTCACATTAGTCAA
ACATCTTTTCATTCTCGCTTGATTATACT
Found at i:861758 original size:45 final size:45
Alignment explanation
Indices: 861721--861858 Score: 156
Period size: 45 Copynumber: 3.1 Consensus size: 45
861711 TTTCATCTGC
* *
861721 TTTAATGTGAGGGTTCTTGCCCTGGTCAAACTCTTTTTATTCTCA
1 TTTAATGTGAGGGTTCTTACCCTAGTCAAACTCTTTTTATTCTCA
* * *
861766 TTTGATGTGATGGTTCTTACCCTAGTCAAACTCTTTTCATTACT-A
1 TTTAATGTGAGGGTTCTTACCCTAGTCAAACTCTTTTTATT-CTCA
* * *
861811 TTTAATGTGATGGTT-TT-CGCCTAGTCAAACATATTTTCATTCTCA
1 TTTAATGTGAGGGTTCTTAC-CCTAGTCAAAC-TCTTTTTATTCTCA
861856 TTT
1 TTT
861859 TACTATACCT
Statistics
Matches: 82, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
43 1 0.01
44 15 0.18
45 64 0.78
46 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (45 bp):
TTTAATGTGAGGGTTCTTACCCTAGTCAAACTCTTTTTATTCTCA
Found at i:861918 original size:45 final size:44
Alignment explanation
Indices: 861866--861980 Score: 98
Period size: 39 Copynumber: 2.7 Consensus size: 44
861856 TTTTACTATA
861866 CCTAGTCAAACTTTTTTCATTCTCATTTAATGTGATGGCTTTTAC
1 CCTAGTCAAACTTTTTTCATTCTCATTTAATGTGATGG-TTTTAC
* * * * * *
861911 CTTAGTCAAAC--TCTTC---CT-ATTTGACGTGATAGTTCTTGC
1 CCTAGTCAAACTTTTTTCATTCTCATTTAATGTGATGGTT-TTAC
* *
861950 CCTAGTCAAACATTTTTCATTCCCATTTAAT
1 CCTAGTCAAACTTTTTTCATTCTCATTTAAT
861981 TTTACCTGGT
Statistics
Matches: 52, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
38 2 0.04
39 24 0.46
40 2 0.04
41 4 0.08
43 4 0.08
44 1 0.02
45 15 0.29
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.43
Consensus pattern (44 bp):
CCTAGTCAAACTTTTTTCATTCTCATTTAATGTGATGGTTTTAC
Found at i:861921 original size:170 final size:170
Alignment explanation
Indices: 861620--861980 Score: 420
Period size: 170 Copynumber: 2.2 Consensus size: 170
861610 TTGGACCTTG
* * *
861620 GTCAAACTTGTTTCATTACCATTTGATGTGATGGTTTTCACATTAGTCAAACATCTTTTCATTCT
1 GTCAAACTTGTTTCATTACCATTTAATGTGATGGTTTTCACACTAGTCAAACATATTTTCATTCT
* * * * * * *
861685 CGCTTGATTATACTTAGTTAAACTTTTTTCATCTGCTTTAATGTGAGGGTTCTTGCCCTGGTCAA
66 CACTTGACTATACCTAGTCAAACTTTTTTCATCTGCTTTAATGTGAGGCTTCTTACCCTAGTCAA
861750 ACTCTTTTTATTCTCATTTGATGTGATGGTTCTTACCCTA
131 ACTCTTTTTATTCTCATTTGATGTGATGGTTCTTACCCTA
* *
861790 GTCAAACTCT-TTTCATTACTATTTAATGTGATGGTTTTCGC-CTAGTCAAACATATTTTCATTC
1 GTCAAACT-TGTTTCATTACCATTTAATGTGATGGTTTTCACACTAGTCAAACATATTTTCATTC
* * *
861853 TCATTTTACTATACCTAGTCAAACTTTTTTCATTCT-CATTTAATGTGATGGCTT-TTACCTTAG
65 TCACTTGACTATACCTAGTCAAACTTTTTTCA-TCTGC-TTTAATGTGA-GGCTTCTTACCCTAG
* * * *
861916 TCAAACTC----T-TCCT-ATTTGACGTGATAGTTCTTGCCCTA
127 TCAAACTCTTTTTATTCTCATTTGATGTGATGGTTCTTACCCTA
*
861954 GTCAAACATT-TTTCATTCCCATTTAAT
1 GTCAAAC-TTGTTTCATTACCATTTAAT
861981 TTTACCTGGT
Statistics
Matches: 165, Mismatches: 21, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
164 45 0.27
165 4 0.02
166 1 0.01
169 47 0.28
170 63 0.38
171 5 0.03
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.45
Consensus pattern (170 bp):
GTCAAACTTGTTTCATTACCATTTAATGTGATGGTTTTCACACTAGTCAAACATATTTTCATTCT
CACTTGACTATACCTAGTCAAACTTTTTTCATCTGCTTTAATGTGAGGCTTCTTACCCTAGTCAA
ACTCTTTTTATTCTCATTTGATGTGATGGTTCTTACCCTA
Found at i:862002 original size:119 final size:122
Alignment explanation
Indices: 861741--862024 Score: 346
Period size: 119 Copynumber: 2.3 Consensus size: 122
861731 GGGTTCTTGC
*
861741 CCTGGTCAAACTCTTTTTATTCTCATTTGATGTGATGG-TTCTTACCCTAGTCAAACTCTTTTCA
1 CCTGGTCAAACTCTTTTCATTCTCATTTGATGTGATGGCTTCTTACCCTAGTCAAACTC-TTTC-
* * * *
861805 TTACTATTTAATGTGATGGTTTTCGCCTAGTCAAACATATTTTCATTCTCATTTTACTATA
64 --ACTATTTAACGTGATAGTTTTCGCCTAGTCAAACATATTTTCATTCCCATTTAACTATA
* * * *
861866 CCTAGTCAAACTTTTTTCATTCTCATTTAATGTGATGGCTT-TTACCTTAGTCAAACTC-TTC-C
1 CCTGGTCAAACTCTTTTCATTCTCATTTGATGTGATGGCTTCTTACCCTAGTCAAACTCTTTCAC
* * *
861928 TATTTGACGTGATAGTTCTT-GCCCTAGTCAAACAT-TTTTCATTCCCATTTAATTTTA
66 TATTTAACGTGATAGTT-TTCG-CCTAGTCAAACATATTTTCATTCCCATTTAACTATA
**
861985 CCTGGTCAAACTCTTTTCATTAGCATTTGATGTGATGGCT
1 CCTGGTCAAACTCTTTTCATTCTCATTTGATGTGATGGCT
862025 CTCGCTTTAT
Statistics
Matches: 139, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
119 69 0.50
120 15 0.11
123 3 0.02
125 50 0.36
126 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (122 bp):
CCTGGTCAAACTCTTTTCATTCTCATTTGATGTGATGGCTTCTTACCCTAGTCAAACTCTTTCAC
TATTTAACGTGATAGTTTTCGCCTAGTCAAACATATTTTCATTCCCATTTAACTATA
Found at i:862020 original size:199 final size:201
Alignment explanation
Indices: 861790--862334 Score: 545
Period size: 199 Copynumber: 2.7 Consensus size: 201
861780 TCTTACCCTA
* *
861790 GTCAAACTCTTTTCATTACTATTTAATGTGATGGTTTTCGCCTAGTCAAACATATTTTCATTCTC
1 GTCAAACTCTTTTCATTAC-ATTTGATGTGATGGTTTTCGCCTAGTCAAACATCTTTTCATTCTC
* * * *
861855 AT-TTTACTATACCTAGTCAAACTTTTTTCATTCTCATTTAATGTGATGGCTTTTACCTTAGTCA
65 -TGTTTACTATA-CTAGTCAAACTCTTTTCATTATCATTTGACGTGATGG-TTTTACCTTAGTCA
*
861919 AAC-TC-TTC-C-TATTTGACGTGATAGTTCTT-GCCCTAGTCAAACAT-TTTTCATTCCCATTT
127 AACATCTTTCTCTTATTTGACGTGATAGTT-TTCACCCTAGTCAAACATCTTTTCATTCCCATTT
*
861978 AATTTTACCTG
191 AATTATACCTG
* * *
861989 GTCAAACTCTTTTCATTAGCATTTGATGTGATGGCTCTCGCTTTA-TCAAACATCTTTTCATTC-
1 GTCAAACTCTTTTCATTA-CATTTGATGTGATGGTTTTCGC-CTAGTCAAACATCTTTTCATTCT
* * * * *
862052 CTGTTTGATTATAGTTGATCAAACTCTTTTCATTATCATTTGACGTGATGGTTTTTGCCCTAGTC
64 CTGTTT-ACTATACTAG-TCAAACTCTTTTCATTATCATTTGACGTGATGG-TTTTACCTTAGTC
* * * * *
862117 AAACATCTTTTCATTCTTGTTTGATGTGATGGTTTTCACCCTAGTTAAACATCTTTTCATTCCTA
126 AAACATC-TTTC--TCTTATTTGACGTGATAGTTTTCACCCTAGTCAAACATCTTTTCATTCCCA
*
862182 TTTGATTATACCTG
188 TTTAATTATACCTG
* ** * * *
862196 ATCAAACTCTTTTCATTATCATTTGACATAATAGTTCTT-GCCCTGGTCAAACATCTTTTCATT-
1 GTCAAACTCTTTTCATTA-CATTTGATGTGATGGTT-TTCG-CCTAGTCAAACATCTTTTCATTC
* * * *
862259 TCTGTCTACCTATATCTGGTTAAACTCTTTTCATTATCATTTGACGTGATGGTTCTCACCTTAGT
63 TCTGTTTA-CTATA-CTAGTCAAACTCTTTTCATTATCATTTGACGTGATGGTT-TTACCTTAGT
*
862324 CAAACAACTTT
125 CAAACATCTTT
862335 TAATTCCCTT
Statistics
Matches: 283, Mismatches: 42, Indels: 34
0.79 0.12 0.09
Matches are distributed among these distances:
197 1 0.00
198 6 0.02
199 102 0.36
200 5 0.02
202 3 0.01
205 3 0.01
206 27 0.10
207 60 0.21
208 74 0.26
209 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.44
Consensus pattern (201 bp):
GTCAAACTCTTTTCATTACATTTGATGTGATGGTTTTCGCCTAGTCAAACATCTTTTCATTCTCT
GTTTACTATACTAGTCAAACTCTTTTCATTATCATTTGACGTGATGGTTTTACCTTAGTCAAACA
TCTTTCTCTTATTTGACGTGATAGTTTTCACCCTAGTCAAACATCTTTTCATTCCCATTTAATTA
TACCTG
Found at i:862049 original size:80 final size:81
Alignment explanation
Indices: 861929--862132 Score: 241
Period size: 80 Copynumber: 2.5 Consensus size: 81
861919 AACTCTTCCT
* * * * *
861929 ATTTGACGTGATAGTTCTTGCCCTAGTCAAACAT-TTTTCATTCCCATTTAATTTTACCTGGTCA
1 ATTTGACGTGATGGCTCTCGCCCTAGTCAAACATCTTTTCATTCCCATTTAATTATACCTGATCA
861993 AACTCTTTTCATTAGC
66 AACTCTTTTCATTAGC
* ** ** * **
862009 ATTTGATGTGATGGCTCTCGCTTTA-TCAAACATCTTTTCATTCCTGTTTGATTATAGTTGATCA
1 ATTTGACGTGATGGCTCTCGCCCTAGTCAAACATCTTTTCATTCCCATTTAATTATACCTGATCA
*
862073 AACTCTTTTCATTATC
66 AACTCTTTTCATTAGC
* * *
862089 ATTTGACGTGATGGTTTTTGCCCTAGTCAAACATCTTTTCATTC
1 ATTTGACGTGATGGCTCTCGCCCTAGTCAAACATCTTTTCATTC
862133 TTGTTTGATG
Statistics
Matches: 102, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 8 0.08
80 76 0.75
81 18 0.18
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.44
Consensus pattern (81 bp):
ATTTGACGTGATGGCTCTCGCCCTAGTCAAACATCTTTTCATTCCCATTTAATTATACCTGATCA
AACTCTTTTCATTAGC
Found at i:862187 original size:46 final size:46
Alignment explanation
Indices: 862070--862187 Score: 150
Period size: 46 Copynumber: 2.6 Consensus size: 46
862060 TTATAGTTGA
* **
862070 TCAAAC-TCTTTTCATT-ATCATTTGACGTGATGGTTTTTGCCCTAG
1 TCAAACATCTTTTCATTCAT-ATTTGATGTGATGGTTTTCACCCTAG
* *
862115 TCAAACATCTTTTCATTCTTGTTTGATGTGATGGTTTTCACCCTAG
1 TCAAACATCTTTTCATTCATATTTGATGTGATGGTTTTCACCCTAG
* *
862161 TTAAACATCTTTTCATTCCTATTTGAT
1 TCAAACATCTTTTCATTCATATTTGAT
862188 TATACCTGAT
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
45 6 0.10
46 56 0.89
47 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (46 bp):
TCAAACATCTTTTCATTCATATTTGATGTGATGGTTTTCACCCTAG
Found at i:862207 original size:81 final size:81
Alignment explanation
Indices: 862114--862498 Score: 348
Period size: 81 Copynumber: 4.8 Consensus size: 81
862104 TTTTGCCCTA
* * * * *
862114 GTCAAACATCTTTTCATTCTTGTTTGATGTGATGGTTTTCACCCTAGTTAAACATCTTTTCATTC
1 GTCAAAC-TCTTTTCATTATTGTTTGACGTGATGGTTCTCGCCCTAGTCAAACATCTTTTCATTC
*
862179 CTATTTGATTATACCTG
65 CTATTTGACTATACCTG
* ** * * * * * *
862196 ATCAAACTCTTTTCATTATCATTTGACATAATAGTTCTTGCCCTGGTCAAACATCTTTTCATTTC
1 GTCAAACTCTTTTCATTATTGTTTGACGTGATGGTTCTCGCCCTAGTCAAACATCTTTTCATTCC
* * *
862261 TGTCT-ACCTATATCTG
66 TATTTGA-CTATACCTG
* ** * * * *
862277 GTTAAACTCTTTTCATTATCATTTGACGTGATGGTTCTCACCTTAGTCAAACAACTTTTAATTCC
1 GTCAAACTCTTTTCATTATTGTTTGACGTGATGGTTCTCGCCCTAGTCAAACATCTTTTCATT-C
* *
862342 CT-TTTGAGTGTACCTG
65 CTATTTGACTATACCTG
* * * ** *
862358 GTCAAACTCTTTTTATTATTGTCTGACGTAATGGTTCTCGGGCTAGTCAAACATTTTTTCATTCC
1 GTCAAACTCTTTTCATTATTGTTTGACGTGATGGTTCTCGCCCTAGTCAAACATCTTTTCATTCC
* *
862423 CATTTGACTGTACCT-
66 TATTTGACTATACCTG
* * **
862438 GTCAAACTCTTTTCATT-TTGGTTTGACATGATGGTTCTCGCCCTGGTTGAAC-TCTTTTCAT
1 GTCAAACTCTTTTCATTATT-GTTTGACGTGATGGTTCTCGCCCTAGTCAAACATCTTTTCAT
862499 CTGGTTTAAC
Statistics
Matches: 239, Mismatches: 59, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
79 10 0.04
80 43 0.18
81 177 0.74
82 9 0.04
ACGTcount: A:0.22, C:0.21, G:0.13, T:0.44
Consensus pattern (81 bp):
GTCAAACTCTTTTCATTATTGTTTGACGTGATGGTTCTCGCCCTAGTCAAACATCTTTTCATTCC
TATTTGACTATACCTG
Found at i:862296 original size:208 final size:206
Alignment explanation
Indices: 861949--862340 Score: 500
Period size: 208 Copynumber: 1.9 Consensus size: 206
861939 ATAGTTCTTG
* *
861949 CCCTAGTCAAACATTTTTCATTCCCATTTAATTTTACCTGGTCAAACTCTTTTCATTAGCATTTG
1 CCCTAGTCAAACATTTTTCATTCCCATTTAATTATACCTGATCAAACTCTTTTCATTAGCATTTG
** * * * * * *
862014 ATGTGATGGCTCTCGCTTTATCAAACATCTTTTCATTCCTGTTTGATTATAGTTGATCAAACTCT
66 ACATAATAGCTCTCGCCTGATCAAACATCTTTTCATTCCTGTCTGACTATAGTTGATCAAACTCT
* ** * *
862079 TTTCATTATCATTTGACGTGATGGTTTTTGCCCTAGTCAAACATCTTTTCATTCTTGTTTGATGT
131 TTTCATTATCATTTGACGTGATGGTTCTCACCCTAGTCAAACAACTTTTAATTCTTGTTTGATGT
862144 GATGGTTTTCA
196 GATGGTTTTCA
* * * *
862155 CCCTAGTTAAACATCTTTTCATTCCTATTTGATTATACCTGATCAAACTCTTTTCATTATCATTT
1 CCCTAGTCAAACAT-TTTTCATTCCCATTTAATTATACCTGATCAAACTCTTTTCATTAGCATTT
* * * * * *
862220 GACATAATAGTTCTTGCCCTGGTCAAACATCTTTTCATTTCTGTCT-ACCTATA-TCTGGTTAAA
65 GACATAATAGCTCTCG-CCTGATCAAACATCTTTTCATTCCTGTCTGA-CTATAGT-TGATCAAA
*
862283 CTCTTTTCATTATCATTTGACGTGATGGTTCTCACCTTAGTCAAACAACTTTTAATTC
127 CTCTTTTCATTATCATTTGACGTGATGGTTCTCACCCTAGTCAAACAACTTTTAATTC
862341 CCTTTTGAGT
Statistics
Matches: 156, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
206 13 0.08
207 57 0.37
208 86 0.55
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.44
Consensus pattern (206 bp):
CCCTAGTCAAACATTTTTCATTCCCATTTAATTATACCTGATCAAACTCTTTTCATTAGCATTTG
ACATAATAGCTCTCGCCTGATCAAACATCTTTTCATTCCTGTCTGACTATAGTTGATCAAACTCT
TTTCATTATCATTTGACGTGATGGTTCTCACCCTAGTCAAACAACTTTTAATTCTTGTTTGATGT
GATGGTTTTCA
Found at i:867595 original size:21 final size:20
Alignment explanation
Indices: 867562--867626 Score: 78
Period size: 22 Copynumber: 3.1 Consensus size: 20
867552 ATTATAACTC
867562 CCCT-TTAATTAAAAATTTTCT
1 CCCTCTTAA-TAAAAATTTT-T
867583 CCCTCTTAATAAAAATTTTT
1 CCCTCTTAATAAAAATTTTT
*
867603 CTCCTCCTTAATAAAATTTTTT
1 C-CCT-CTTAATAAAAATTTTT
867625 CC
1 CC
867627 TTTTAAAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
20 2 0.05
21 18 0.45
22 20 0.50
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (20 bp):
CCCTCTTAATAAAAATTTTT
Found at i:872133 original size:133 final size:133
Alignment explanation
Indices: 871895--872147 Score: 479
Period size: 133 Copynumber: 1.9 Consensus size: 133
871885 AATTATGGCT
871895 AATACTGTTTTCATTACAAAAGTTATCAAAACCAAGATTCTCAAATTCTCTACCATGGTCACTTC
1 AATACTGTTTTCATTACAAAAGTTATCAAAACCAAGATTCTCAAATTCTCTACCATGGTCACTTC
871960 TTATGCTAGATAAGGAGTCACCTATTTCATTTTGAATAATTTTACAAAAAGTGATCATCCACTTT
66 TTATGCTAGATAAGGAGTCACCTATTTCATTTTGAATAATTTTACAAAAAGTGATCATCCACTTT
872025 TTG
131 TTG
**
872028 AATACTGTTTTCATTACAAAAGTTATCAAAATTAAGATTCTCAAATTCTCTACCATGGTCACTTC
1 AATACTGTTTTCATTACAAAAGTTATCAAAACCAAGATTCTCAAATTCTCTACCATGGTCACTTC
*
872093 TTATGCTAGATAAGGAGTCACCTTTTTCATTTTGAATAATTTTACAAAAAGTGAT
66 TTATGCTAGATAAGGAGTCACCTATTTCATTTTGAATAATTTTACAAAAAGTGAT
872148 GAATTTTTCT
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
133 117 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (133 bp):
AATACTGTTTTCATTACAAAAGTTATCAAAACCAAGATTCTCAAATTCTCTACCATGGTCACTTC
TTATGCTAGATAAGGAGTCACCTATTTCATTTTGAATAATTTTACAAAAAGTGATCATCCACTTT
TTG
Found at i:875512 original size:13 final size:13
Alignment explanation
Indices: 875494--875519 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
875484 CTTTTTACTA
875494 TGTATCGATACAT
1 TGTATCGATACAT
875507 TGTATCGATACAT
1 TGTATCGATACAT
875520 GTCCCATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:880201 original size:154 final size:153
Alignment explanation
Indices: 880018--880469 Score: 390
Period size: 154 Copynumber: 2.9 Consensus size: 153
880008 CTGGTGATTC
* ** * * * *
880018 TAAAGGACTTAAAAAGGTTATAAATAAGATGAACCTATCCTAAATGCCTACCTTTGACATAAAAG
1 TAAAGGACATAAAAAGGAGATAAATAAGATGAACCTATCCTAAATACCCACCTTCGACATAAAAA
* ** * *
880083 CAAAGCTGGCGACAACCTAGGAGTTG-GTTCGAAAAAATTACTAAAATGCCCTTAAGGGATACCT
66 CAAACCCAGCGACAACCTAGGACTTGAGTTCG-AAAAATTACAAAAATGCCCTTAAGGGATACCT
880147 TCGACGTAGAAATACCAGATACCCT
130 TCGACGT-GAAATACCAGATACCCT
**
880172 TAAAGGACATAAAAAGGAGATGGATAAGATGAACCTATCCTAAATACCCACCTTCGACATAAAAA
1 TAAAGGACATAAAAAGGAGATAAATAAGATGAACCTATCCTAAATACCCACCTTCGACATAAAAA
* * * * * ** *
880237 CGAACCCAGTGAGAACCTAGGACTTGATTTTGGGAAATTACAAAAATGCCCTTAGGGGATACCTT
66 CAAACCCAGCGACAACCTAGGACTTGAGTTCGAAAAATTACAAAAATGCCCTTAAGGGATACCTT
** * *
880302 CGACGTGAAAGTATCTTGGTACCCC
131 CGACGTGAAA-TA-CCAGATACCCT
* * * * * * * *
880327 TAAAGGACTTAACAGGGACTATAAA-AGGGATGGACCTATCCTAAATACCGA-CTATCGGCATAA
1 TAAAGGACATAAAAAGGA-GATAAATA-AGATGAACCTATCCTAAATACCCACCT-TCGACATAA
** * ** * * * ** *
880390 AAGTAGACCCAGTTATAACCAAAGACTTGA-TTCTGAAAAATTATGAAAATGCCCCTAAGGGATA
63 AAACAAACCCAGCGACAACCTAGGACTTGAGTTC-GAAAAATTACAAAAATGCCCTTAAGGGATA
880454 CCTTCGACGTTGAAAT
127 CCTTCGACG-TGAAAT
880470 TATCACTATA
Statistics
Matches: 239, Mismatches: 51, Indels: 14
0.79 0.17 0.05
Matches are distributed among these distances:
153 4 0.02
154 112 0.47
155 30 0.13
156 88 0.37
157 5 0.02
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.23
Consensus pattern (153 bp):
TAAAGGACATAAAAAGGAGATAAATAAGATGAACCTATCCTAAATACCCACCTTCGACATAAAAA
CAAACCCAGCGACAACCTAGGACTTGAGTTCGAAAAATTACAAAAATGCCCTTAAGGGATACCTT
CGACGTGAAATACCAGATACCCT
Found at i:881472 original size:34 final size:31
Alignment explanation
Indices: 881367--881488 Score: 99
Period size: 34 Copynumber: 3.7 Consensus size: 31
881357 ATTGAGAAGG
*
881367 TCTATCTTAGCCT-TGAAAGAT-AGTGTAGAGGT
1 TCTATCTTAGCCTGTAAAAGATAAG-G--GAGGT
881399 TCTATCTTAGGCCTTTGTAAAAGAT-AGGGAGGT
1 TCTATCTTA-GCC--TGTAAAAGATAAGGGAGGT
* *
881432 TTTATCTTAGCCTGCAAAAGATAAGGAGAAAGGT
1 TCTATCTTAGCCTGTAAAAGATAAGG-G--AGGT
881466 TCTATCTTTAGCCT-TAAAAGATA
1 TCTATC-TTAGCCTGTAAAAGATA
881489 GTGTTGCAAG
Statistics
Matches: 76, Mismatches: 5, Indels: 16
0.78 0.05 0.16
Matches are distributed among these distances:
30 9 0.12
31 3 0.04
32 13 0.17
33 16 0.21
34 17 0.22
35 9 0.12
36 9 0.12
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (31 bp):
TCTATCTTAGCCTGTAAAAGATAAGGGAGGT
Found at i:885952 original size:13 final size:13
Alignment explanation
Indices: 885934--885958 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
885924 ATATTGCTTA
885934 GTATCGATACATT
1 GTATCGATACATT
885947 GTATCGATACAT
1 GTATCGATACAT
885959 GTTCTTGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:885975 original size:32 final size:33
Alignment explanation
Indices: 885913--885976 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
885903 CACACCCAGA
885913 TGTATCGATACATATTGCTTAGTATCGATACAT
1 TGTATCGATACATATTGCTTAGTATCGATACAT
* *
885946 TGTATCGATACATGTT-CTTGGTATCGATACA
1 TGTATCGATACATATTGCTTAGTATCGATACA
885977 CAGTGAATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATATTGCTTAGTATCGATACAT
Found at i:887219 original size:13 final size:13
Alignment explanation
Indices: 887201--887226 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
887191 TACACAAAGT
887201 ATGTATCGATACA
1 ATGTATCGATACA
887214 ATGTATCGATACA
1 ATGTATCGATACA
887227 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:888536 original size:79 final size:79
Alignment explanation
Indices: 888321--888550 Score: 261
Period size: 79 Copynumber: 2.9 Consensus size: 79
888311 TGGAGATAAC
* * * *
888321 AACGGGGCTGGAGTATCCTCGATTATAGAAAATCGGTG-TTCTAGAAATAAAATCAGGGTTGGAG
1 AACGGGGTTGGAGTATCCCCGATTATAGAAAATCGGTGATT-TAGAAATAAAATCGGGGTTAGAG
* *
888385 TATCCCCTTGGAAAT
65 TATCCCCGTGAAAAT
* * *
888400 AACAGGGTTGGAGTATCCCTGATTATAGAAAATCGGT-ATTTTGAAAATAAAATCGGGGTTAGAG
1 AACGGGGTTGGAGTATCCCCGATTATAGAAAATCGGTGATTTAG-AAATAAAATCGGGGTTAGAG
*
888464 TATTCCCGTGAAAAT
65 TATCCCCGTGAAAAT
** ***
888479 AACGGGGTTGGAGTATCCCCGATTAT-GAAAAATCAATGATTTAGAAATAAGGCCGGGGTT-GAA
1 AACGGGGTTGGAGTATCCCCGATTATAG-AAAATCGGTGATTTAGAAATAAAATCGGGGTTAG-A
888542 GTATCCCCG
64 GTATCCCCG
888551 ATTGTGAGAA
Statistics
Matches: 127, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
78 4 0.03
79 118 0.93
80 5 0.04
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (79 bp):
AACGGGGTTGGAGTATCCCCGATTATAGAAAATCGGTGATTTAGAAATAAAATCGGGGTTAGAGT
ATCCCCGTGAAAAT
Found at i:888548 original size:51 final size:51
Alignment explanation
Indices: 888481--888599 Score: 177
Period size: 51 Copynumber: 2.3 Consensus size: 51
888471 GTGAAAATAA
*
888481 CGGGGTTGGAGTATCCCCGATTATGAAAAATCAATGA-TTTAGAAATAAGGC
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATCAAT-ATTTTAGAAATAAAGC
* * * *
888532 CGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTAGACATAAAGC
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATAAAGC
888583 CGGGGTTGGAGTATCCC
1 CGGGGTTGGAGTATCCC
888600 TCAAAAATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
50 1 0.02
51 60 0.98
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATAAAGC
Found at i:888712 original size:51 final size:51
Alignment explanation
Indices: 888646--888756 Score: 161
Period size: 51 Copynumber: 2.2 Consensus size: 51
888636 AACGAGATTG
* *
888646 GAGTATCCCCGATTGT-GAAAAATTGGTGTTTCGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTGTAG-AAAATTGGTGTTTCAGAAATAAAATCGAAGTTA
* * *
888697 GAGTATCCCCTATTGTAGAAAATTGGTGTTTTAGAAATAAAATCGAAGTTG
1 GAGTATCCCCGATTGTAGAAAATTGGTGTTTCAGAAATAAAATCGAAGTTA
888748 GAGTATCCC
1 GAGTATCCC
888757 ATCGGAAATG
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
51 53 0.98
52 1 0.02
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (51 bp):
GAGTATCCCCGATTGTAGAAAATTGGTGTTTCAGAAATAAAATCGAAGTTA
Found at i:888915 original size:79 final size:79
Alignment explanation
Indices: 888697--888915 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 79
888687 ATCGGAGTTA
* * * *
888697 GAGTATCCCCTATTGT-AGAAAATTGGTGTTTTAGAAATAAAATCGAAGTTGGAGTATCCCATCG
1 GAGTATCCCCAATTGTGA-AAAATTGGTGTTTTGGAAATAAAATCGAGGTTGGAGTATCCCCTCG
* *
888761 GAAATGAAGGGGTTG
65 AAAATGAAGGGATTG
* * *
888776 GAGTATCCCTAATTGTGAAAAACTGGTGTTTTGGGAATAAAATC-AGGGTTGGAGTATCCCCTCG
1 GAGTATCCCCAATTGTGAAAAATTGGTGTTTTGGAAATAAAATCGA-GGTTGGAGTATCCCCTCG
888840 AAAAT-AACGGGATTG
65 AAAATGAA-GGGATTG
* * * *
888855 GAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAACCGAGGTTGGAGTATCCCC
1 GAGTATCCCCAATTGTGAAAAATTGGTGTTTTGGAAATAAAATCGAGGTTGGAGTATCCCC
888916 GAGATGAAGA
Statistics
Matches: 120, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 3 0.03
79 115 0.96
80 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (79 bp):
GAGTATCCCCAATTGTGAAAAATTGGTGTTTTGGAAATAAAATCGAGGTTGGAGTATCCCCTCGA
AAATGAAGGGATTG
Found at i:891813 original size:40 final size:39
Alignment explanation
Indices: 891769--891870 Score: 109
Period size: 41 Copynumber: 2.5 Consensus size: 39
891759 GTCCCACTTT
891769 TTGAGGACAAAGGAAAAGAGAATAA-AATAG-GTCTTGCTCC
1 TTGAGGACAAAGGAAAA-AGAA-AAGAA-AGTGTCTTGCTCC
* *
891809 TTGAGGAAAAAGGAAGAAAGAAAAGGAAAGTGTCTTGCTTC
1 TTGAGGACAAAGGAA-AAAGAAAA-GAAAGTGTCTTGCTCC
*
891850 TTGAAGACAAAGTGAAAAAGA
1 TTGAGGACAAAG-GAAAAAGA
891871 GTACGTCTTG
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
39 2 0.04
40 20 0.38
41 28 0.53
42 3 0.06
ACGTcount: A:0.46, C:0.09, G:0.26, T:0.19
Consensus pattern (39 bp):
TTGAGGACAAAGGAAAAAGAAAAGAAAGTGTCTTGCTCC
Found at i:891867 original size:35 final size:33
Alignment explanation
Indices: 891835--891904 Score: 88
Period size: 35 Copynumber: 2.1 Consensus size: 33
891825 AAAGAAAAGG
*
891835 AAAGT-GTCTTGCTTCTTGAAGACAAAGTGAAAA
1 AAAGTAGTCTTGCTTCTCGAAGACAAAG-GAAAA
* *
891868 AGAGTACGTCTTGCTTCTCGAGGACAAAGGAAAA
1 AAAGTA-GTCTTGCTTCTCGAAGACAAAGGAAAA
891902 AAA
1 AAA
891905 AGGAAAATGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
33 4 0.13
34 7 0.23
35 20 0.65
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (33 bp):
AAAGTAGTCTTGCTTCTCGAAGACAAAGGAAAA
Found at i:891966 original size:42 final size:43
Alignment explanation
Indices: 891904--892041 Score: 131
Period size: 42 Copynumber: 3.2 Consensus size: 43
891894 AAGGAAAAAA
* * *
891904 AAGGAAAATGAAA-TGTGTCCTCCTCTTTTAGGATAAAAGAAA-
1 AAGGAAAAT-AAAGTGCGTCCTGCTCTTTGAGGATAAAAGAAAG
* *
891946 AAGGAAAATAAAGTGCGTCCTGCTCATTGAGAACTAGAAAGGAAAAG
1 AAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGA-TA-AAA-G-AAAG
* * *
891993 AAGG-AAATGAAGTGCATCCTGCTCTTTGAGGA-CAAAGAAAG
1 AAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGATAAAAGAAAG
892034 AAGGAAAA
1 AAGGAAAA
892042 GGCATCCTGC
Statistics
Matches: 79, Mismatches: 10, Indels: 14
0.77 0.10 0.14
Matches are distributed among these distances:
41 11 0.14
42 28 0.35
43 5 0.06
44 3 0.04
45 1 0.01
46 27 0.34
47 4 0.05
ACGTcount: A:0.44, C:0.12, G:0.24, T:0.20
Consensus pattern (43 bp):
AAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGATAAAAGAAAG
Found at i:892116 original size:61 final size:61
Alignment explanation
Indices: 892034--892219 Score: 270
Period size: 61 Copynumber: 3.1 Consensus size: 61
892024 ACAAAGAAAG
* *
892034 AAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAGAGTGCCACCAACTTGTGTGGGTTTTAA
1 AAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAGAGTGCCACCAACTTGTGTGGGCTTTAA
* * *
892095 AAGGAAAAGGCGTCCTACTCTTTGAGGACTAAAG-GTGCCACCAGCTTGTGTGCGCTTTAA
1 AAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAGAGTGCCACCAACTTGTGTGGGCTTTAA
* *
892155 AAGGAAAAGGCGTCCTGCTTTTTGATGACTGGAAA-A-TGCCACCAACTTGTGTGGGCTTTAA
1 AAGGAAAAGGCGTCCTGCTCTTTGAGGACT--AAAGAGTGCCACCAACTTGTGTGGGCTTTAA
892216 AAGG
1 AAGG
892220 CGTGCTGTTC
Statistics
Matches: 112, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
60 50 0.45
61 59 0.53
62 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (61 bp):
AAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAGAGTGCCACCAACTTGTGTGGGCTTTAA
Found at i:892308 original size:156 final size:155
Alignment explanation
Indices: 892104--892398 Score: 414
Period size: 156 Copynumber: 1.9 Consensus size: 155
892094 AAAGGAAAAG
* * *
892104 GCGTCCTACTCTTTGAGGACTAAAGGTGCCACCAGCTTGTGTGCGCTTTAAAAGGAAAAGGCGTC
1 GCGTCCTACTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGCGCTTTAAAAGGAAAAGACATC
* * * * * *
892169 CTGCTTTTTGATGACT-GGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTGCTGTTCTTT
66 CTACTCTTTGAGGACTAGG-AAATGCCACCAACTTGTCTAGGCTTTAAAAGGCGTCCTGTTCTTT
892233 GAGGACTAAAGGGCGAAAGGAGAGAA
130 GAGGACTAAAGGGCGAAAGGAGAGAA
* * * *
892259 GCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGACA
1 GCGTCCTACTCTTTGAGGACT--AAAGGTGCCACCAACTTGTGTGCGCTTTAAAAGGAAAAGACA
* *
892323 TCCTACTCTTTGAGGACTAGGAAGTGTCACCAACTTGTCTAGGCTTTAAAAGGCGTCCTGTTCTT
64 TCCTACTCTTTGAGGACTAGGAAATGCCACCAACTTGTCTAGGCTTTAAAAGGCGTCCTGTTCTT
892388 TGAGGACTAAA
129 TGAGGACTAAA
892399 AAATGCCACC
Statistics
Matches: 122, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
155 20 0.16
156 98 0.80
157 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (155 bp):
GCGTCCTACTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGCGCTTTAAAAGGAAAAGACATC
CTACTCTTTGAGGACTAGGAAATGCCACCAACTTGTCTAGGCTTTAAAAGGCGTCCTGTTCTTTG
AGGACTAAAGGGCGAAAGGAGAGAA
Found at i:892413 original size:55 final size:56
Alignment explanation
Indices: 892259--892508 Score: 249
Period size: 55 Copynumber: 4.4 Consensus size: 56
892249 AAGGAGAGAA
***
892259 GCGTCCTGC-TCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAG
1 GCGTCCTGCTTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT-AAA--AG
* * ** * * *
892317 AAGACATCCTAC-TCTTTGAGGACTAGGAAGTGTCACCAACTTGTCTAGGCTTTAAAAG
1 --G-CGTCCTGCTTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
*
892375 GCGTCCTG-TTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
1 GCGTCCTGCTTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * *
892430 GCGTCCTGCTT-TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * * *
892485 GCATCCTAC-TCTTTCAGGAATAAA
1 GCGTCCTGCTTCTTTGAGGACTAAA
892509 GGGTGAAAGG
Statistics
Matches: 163, Mismatches: 23, Indels: 13
0.82 0.12 0.07
Matches are distributed among these distances:
54 1 0.01
55 110 0.67
56 3 0.02
58 2 0.01
60 4 0.02
61 43 0.26
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (56 bp):
GCGTCCTGCTTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:902192 original size:18 final size:18
Alignment explanation
Indices: 902169--902232 Score: 119
Period size: 18 Copynumber: 3.6 Consensus size: 18
902159 TATCCCCATA
902169 TCTTTTGGCAAAAGATTC
1 TCTTTTGGCAAAAGATTC
*
902187 TCTTTTGGCAAAATATTC
1 TCTTTTGGCAAAAGATTC
902205 TCTTTTGGCAAAAGATTC
1 TCTTTTGGCAAAAGATTC
902223 TCTTTTGGCA
1 TCTTTTGGCA
902233 TTGTCCCAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.25, C:0.17, G:0.16, T:0.42
Consensus pattern (18 bp):
TCTTTTGGCAAAAGATTC
Found at i:904662 original size:79 final size:79
Alignment explanation
Indices: 904544--904715 Score: 231
Period size: 79 Copynumber: 2.2 Consensus size: 79
904534 AACGGGGCTA
* *
904544 GAGTATCCCTGATTATGGAAAATCGGTGTTCTGAAAATAAAATCGAGGTTGGAGTATCCCCTCAG
1 GAGTATCCCTGATTATAGAAAATCGGTATTCTGAAAATAAAATCGAGGTTGGAGTATCCCCTC-G
904609 -AAATAACAG-GGTTG
65 TAAATAA-AGAGGTTG
* * * *
904623 GAGTATCCCTGATTATAGAAAATCGGTATTTTGAAAATAAAATTGGGGTTGGAGTATTCCCTCGT
1 GAGTATCCCTGATTATAGAAAATCGGTATTCTGAAAATAAAATCGAGGTTGGAGTATCCCCTCGT
*
904688 AAATAATGAGGTTG
66 AAATAAAGAGGTTG
* *
904702 GAGTACCCCCGATT
1 GAGTATCCCTGATT
904716 GTGAAAAATC
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
78 2 0.02
79 80 0.98
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (79 bp):
GAGTATCCCTGATTATAGAAAATCGGTATTCTGAAAATAAAATCGAGGTTGGAGTATCCCCTCGT
AAATAAAGAGGTTG
Found at i:904741 original size:79 final size:79
Alignment explanation
Indices: 904544--904738 Score: 191
Period size: 79 Copynumber: 2.5 Consensus size: 79
904534 AACGGGGCTA
* * * * *
904544 GAGTATCCCTGATTATGGAAAATCGGTGTTCT-GAAAATAAAATCGAGGTTGGAGTATCCCCTCA
1 GAGTACCCCCGATTATAGAAAATCGATATT-TAGAAAATAAAATCGAGGTTGGAGTATCCCCTCA
904608 GAAATAACAGGGTTG
65 GAAATAACAGGGTTG
* * * * * * *
904623 GAGTATCCCTGATTATAGAAAATCGGTATTTTGAAAATAAAATTGGGGTTGGAGTATTCCCTC-G
1 GAGTACCCCCGATTATAGAAAATCGATATTTAGAAAATAAAATCGAGGTTGGAGTATCCCCTCAG
*
904687 TAAATAA-TGAGGTTG
66 -AAATAACAG-GGTTG
*
904702 GAGTACCCCCGATTGT-GAAAAATCGATGATTTAGAAA
1 GAGTACCCCCGATTATAG-AAAATCGAT-ATTTAGAAA
904739 TAAGGCCGGG
Statistics
Matches: 100, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 4 0.04
79 88 0.88
80 8 0.08
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (79 bp):
GAGTACCCCCGATTATAGAAAATCGATATTTAGAAAATAAAATCGAGGTTGGAGTATCCCCTCAG
AAATAACAGGGTTG
Found at i:904763 original size:51 final size:51
Alignment explanation
Indices: 904697--904813 Score: 164
Period size: 51 Copynumber: 2.3 Consensus size: 51
904687 TAAATAATGA
* * *
904697 GGTTGGAGTACCCCCGATTGTGAAAAATCGATGA-TTTAGAAATAAGGCCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATCAAT-ATTTTAGAAATAAAGCCGG
* * *
904748 GGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAGCCGG
904799 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
904814 TCGGAAATAA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 1 0.02
51 57 0.98
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAGCCGG
Found at i:904784 original size:130 final size:130
Alignment explanation
Indices: 904615--905022 Score: 424
Period size: 130 Copynumber: 3.1 Consensus size: 130
904605 TCAGAAATAA
* * **
904615 CAGGGTTGGAGTATCCCTGATTAT-AGAAAATCGGTATTTTGAAAATAAAATTGGGGTTGGAGTA
1 CAGGGTTGGAGTATCCCCGATTGTGAG-AAATCGGTATTTTGAAAATAAAACCGGGGTTGGAGTA
* * * * **
904679 TTCCCTCGTAAATAATGAGGTTGGAGTACCCCCGATTGTGAAAAATCGATGATTTAGAAATAAGG
65 TCCCCTCGGAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGATTTAGAAATAAAA
904744 C
130 C
* * ** * *
904745 CGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
1 CAGGGTTGGAGTATCCCCGATTGTGAGAAATCGGTATTTTGAAAATAAAACCGGGGTTGGAGTAT
* * * * * * * *
904810 CCCCTCGGAAATAACGGGGTTGGAGTATCCTCGATTGTGAAAATTTGGTGTTTTGGAAATAAAAT
66 CCCCTCGGAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGATTTAGAAATAAAAC
* * * * *
904875 CAGAGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTT-AGAAATAAAACCGAGGTTGGAGTA
1 CAGGGTTGGAGTATCCCCGATTGTGAGAAATCGGTATTTTGA-AAATAAAACCGGGGTTGGAGTA
* * * * * * * *
904939 TCCCCTCGGAAATGATGGGGTTAGAGTATCCCCAATTGTGAAAAAACTAGTGTTTTGGGAATAAA
65 TCCCCTCGGAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATCGA-TGATTTAGAAATAAA
*
905004 AT
129 AC
*
905006 CGGGGTTGGAGTATCCC
1 CAGGGTTGGAGTATCCC
905023 TTTGAAAATA
Statistics
Matches: 227, Mismatches: 48, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
130 194 0.85
131 33 0.15
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (130 bp):
CAGGGTTGGAGTATCCCCGATTGTGAGAAATCGGTATTTTGAAAATAAAACCGGGGTTGGAGTAT
CCCCTCGGAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGATTTAGAAATAAAAC
Found at i:904883 original size:79 final size:79
Alignment explanation
Indices: 904745--904892 Score: 190
Period size: 79 Copynumber: 1.9 Consensus size: 79
904735 GAAATAAGGC
* * *
904745 CGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAACCAGAGTTGGAGTAT
904810 CCCCTCGGAAATAA
66 CCCCTCGGAAATAA
* * *** * *
904824 CGGGGTTGGAGTATCCTCGATTGTGA-AAATTTGGTGTTTTGGAAATAAAATCAGAGTTGGAGTA
1 CGGGGTTGAAGTATCCCCGATTGTGAGAAA-TCAATATTTTGGAAATAAAACCAGAGTTGGAGTA
904888 TCCCC
65 TCCCC
904893 GATTGTGAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
78 3 0.05
79 55 0.95
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (79 bp):
CGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAACCAGAGTTGGAGTAT
CCCCTCGGAAATAA
Found at i:904889 original size:51 final size:51
Alignment explanation
Indices: 904827--904943 Score: 182
Period size: 51 Copynumber: 2.3 Consensus size: 51
904817 GAAATAACGG
* * *
904827 GGTTGGAGTATCCTCGATTGTGAAAATTTGGTGTTTTGGAAATAAAATCAGA
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAA-CAGA
*
904879 -GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGA
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACAGA
904929 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
904944 TCGGAAATGA
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
50 3 0.05
51 57 0.95
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACAGA
Found at i:904966 original size:79 final size:78
Alignment explanation
Indices: 904883--905101 Score: 233
Period size: 80 Copynumber: 2.8 Consensus size: 78
904873 ATCAGAGTTG
* *
904883 GAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGG
1 GAGTATCCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCGA
** *
904948 AAATGATGGGGTTA
66 AAAT-AACGGATTA
* * * * * * * *
904962 GAGTATCCCCAATTGTGAAAAAACTAGTGTTTTGGGAATAAAATCGGGGTTGGAGTATCCCTTTG
1 GAGTATCCCCGATTGTG-AAAAATTGGTGTTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCG
*
905027 AAAATAACGGATTG
65 AAAATAACGGATTA
* * * * *
905041 GAGAATCCTCGATTATGAAAAATTGATGTTTTGGAAATAAAACC-AGAATTGGAGTATCCCC
1 GAGTATCCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAAACCGAG-GTTGGAGTATCCCC
905102 GAGATGAGGA
Statistics
Matches: 112, Mismatches: 26, Indels: 5
0.78 0.18 0.03
Matches are distributed among these distances:
77 1 0.01
78 34 0.30
79 34 0.30
80 43 0.38
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (78 bp):
GAGTATCCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCGA
AAATAACGGATTA
Found at i:907459 original size:20 final size:20
Alignment explanation
Indices: 907434--907501 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
907424 GTAAACCTAA
907434 AATGTATCGATACAATGAAC
1 AATGTATCGATACAATGAAC
907454 AATGTATCGATAC-A-G---
1 AATGTATCGATACAATGAAC
907469 --TGTATCGATACAATGAAC
1 AATGTATCGATACAATGAAC
907487 AATGTATCGATACAA
1 AATGTATCGATACAA
907502 ATTGTGAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
13 11 0.27
14 1 0.02
15 1 0.02
18 1 0.02
19 1 0.02
20 26 0.63
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.26
Consensus pattern (20 bp):
AATGTATCGATACAATGAAC
Found at i:907474 original size:13 final size:13
Alignment explanation
Indices: 907456--907480 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
907446 CAATGAACAA
907456 TGTATCGATACAG
1 TGTATCGATACAG
907469 TGTATCGATACA
1 TGTATCGATACA
907481 ATGAACAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:907478 original size:33 final size:33
Alignment explanation
Indices: 907436--907500 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
907426 AAACCTAAAA
907436 TGTATCGATACAATGAACAATGTATCGATACAG
1 TGTATCGATACAATGAACAATGTATCGATACAG
907469 TGTATCGATACAATGAACAATGTATCGATACA
1 TGTATCGATACAATGAACAATGTATCGATACA
907501 AATTGTGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (33 bp):
TGTATCGATACAATGAACAATGTATCGATACAG
Found at i:908160 original size:32 final size:31
Alignment explanation
Indices: 908083--908242 Score: 159
Period size: 32 Copynumber: 5.0 Consensus size: 31
908073 CTAAGTGATT
908083 GAGAGGTTCTATCTTAGCCTTG-AAAGATAG
1 GAGAGGTTCTATCTTAGCCTTGAAAAGATAG
* *
908113 TGTAGAAGTTATATCTTAGCCTTTGTAAAAGATAG
1 -G-AGAGGTTCTATCTTAGCC-TTG-AAAAGATAG
*
908148 G-GAGGTTTTATCTTAG-CTTGCAAAAGATAAG
1 GAGAGGTTCTATCTTAGCCTTG-AAAAGAT-AG
*
908179 GAGAAAGGTTCTATCTTAGCCCGTGAAAAGATAG
1 GAG--AGGTTCTATCTTAG-CCTTGAAAAGATAG
908213 G-GAGGTTTCTATCTTAGCCTT-AAAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTGAAAAGATAG
908243 TGTTGTAAGG
Statistics
Matches: 110, Mismatches: 8, Indels: 23
0.78 0.06 0.16
Matches are distributed among these distances:
30 19 0.17
31 11 0.10
32 41 0.37
33 4 0.04
34 17 0.15
35 15 0.14
36 3 0.03
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (31 bp):
GAGAGGTTCTATCTTAGCCTTGAAAAGATAG
Found at i:908253 original size:66 final size:66
Alignment explanation
Indices: 908085--908264 Score: 212
Period size: 66 Copynumber: 2.8 Consensus size: 66
908075 AAGTGATTGA
* **
908085 GAGG-TTCTATCTTAGCCTTGAAAGATAGTGTAGAA-GTTATATCTTAGCCTTTGTAAAAGATAG
1 GAGGTTTCTATCTTAGCCTTAAAAGATAGTGTAGAAGGTTATATCTTAGCCCGTGTAAAAGATAG
908148 G
66 G
*
908149 GAGGTTT-TATCTTAG-CTTGCAAAAGATAAG-G-AGAAAGGTTCTATCTTAGCCCGTG-AAAAG
1 GAGGTTTCTATCTTAGCCTT--AAAAGAT-AGTGTAG-AAGGTTATATCTTAGCCCGTGTAAAAG
908209 ATAGG
62 ATAGG
* *
908214 GAGGTTTCTATCTTAGCCTTAAAAGATAGTGTTGTAAGGTTATACCTTAGC
1 GAGGTTTCTATCTTAGCCTTAAAAGATAGTGTAG-AAGGTTATATCTTAGC
908265 TTCAAAGGTA
Statistics
Matches: 98, Mismatches: 8, Indels: 18
0.79 0.06 0.15
Matches are distributed among these distances:
63 3 0.03
64 16 0.16
65 36 0.37
66 40 0.41
67 3 0.03
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (66 bp):
GAGGTTTCTATCTTAGCCTTAAAAGATAGTGTAGAAGGTTATATCTTAGCCCGTGTAAAAGATAG
G
Found at i:909801 original size:10 final size:10
Alignment explanation
Indices: 909786--909820 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
909776 AGCTTGGTTT
909786 TTTTTTTCTA
1 TTTTTTTCTA
*
909796 TTTTTTCCTA
1 TTTTTTTCTA
*
909806 TTTTCTTCTA
1 TTTTTTTCTA
909816 TTTTT
1 TTTTT
909821 CTCTTGCTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.09, C:0.14, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTTTTTCTA
Found at i:910635 original size:164 final size:164
Alignment explanation
Indices: 910301--910721 Score: 460
Period size: 164 Copynumber: 2.6 Consensus size: 164
910291 CAATATATAC
* * *
910301 AAAAAAATTCAAAATTCATG-AAATAAATTGAATTTTTTAAAACTGAATTAAT-GGAGTTCAATG
1 AAAAAAATTCAAAACTCATGAAAATGAATT-AATTTTTTAAAACTGATTTAATGGGAGTTCAATG
*
910364 ACAATATTAGATACATTTAAAAAATTTAGACCAAAGAAAATCTCCCGAAAATATTTATGGATTAG
65 ACAATATTAGATACATTTAAAAAATTTAAACCAAAGAAAATCTCCCGAAAATATTTATGGATTAG
* ** *
910429 AAAACTTGATTTTTCGGGAAAAGGGAGATTTTAAAG
130 AAAAC-TGATTTTTCAGGAAAAAAGAGATTTCAAAG
* ** * *
910465 -AAAAAATTTAAAACTCATGAAAATGAATTAAACTTTCAAAACTGATTTAATGGGAATTTC-ATG
1 AAAAAAATTCAAAACTCATGAAAATGAATTAATTTTTTAAAACTGATTTAATGGG-AGTTCAATG
* * * *
910528 GCATTATTAGATACATTTTAAAAATTTTAAACCAAATAAAATAC-CCTCGAAAATATTTATGGAT
65 ACAATATTAGATACA-TTTAAAAAATTTAAACCAAAGAAAAT-CTCC-CGAAAATATTTATGGAT
*
910592 TAGAAAAC-GATTTTTTAGGAAAAAAGA-ATTTCAAAG
127 TAGAAAACTGATTTTTCAGGAAAAAAGAGATTTCAAAG
* * * * * ** * *
910628 AAAAAAATCCAAAACTCATAAAAATGAATGAATTTTTTAAAATTGATTTAATGTGAAATAAATAA
1 AAAAAAATTCAAAACTCATGAAAATGAATTAATTTTTTAAAACTGATTTAATGGGAGTTCAATGA
* * * *
910693 TAATATTTGATAAATTTTAAAAATTTAAA
66 CAATATTAGATACATTTAAAAAATTTAAA
910722 ATTAAGAAAA
Statistics
Matches: 211, Mismatches: 38, Indels: 17
0.79 0.14 0.06
Matches are distributed among these distances:
163 58 0.27
164 98 0.46
165 29 0.14
166 26 0.12
ACGTcount: A:0.48, C:0.08, G:0.11, T:0.32
Consensus pattern (164 bp):
AAAAAAATTCAAAACTCATGAAAATGAATTAATTTTTTAAAACTGATTTAATGGGAGTTCAATGA
CAATATTAGATACATTTAAAAAATTTAAACCAAAGAAAATCTCCCGAAAATATTTATGGATTAGA
AAACTGATTTTTCAGGAAAAAAGAGATTTCAAAG
Found at i:912716 original size:52 final size:52
Alignment explanation
Indices: 912620--912727 Score: 144
Period size: 52 Copynumber: 2.1 Consensus size: 52
912610 ATGCATTTGA
* * * * *
912620 AATTTTAGCTGTTGGACTCAATGTATCGATACAATTCAAAATGTATCTATAC
1 AATTATAGCCGTTAGACTCAATGTATCGATAAAATTCAAAATGTATCAATAC
* **
912672 AATTATAGCCGTTAGACTCAATGTATCGATAAAATTTACCATGTATCAATAC
1 AATTATAGCCGTTAGACTCAATGTATCGATAAAATTCAAAATGTATCAATAC
912724 AATT
1 AATT
912728 CACTTAGGGT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (52 bp):
AATTATAGCCGTTAGACTCAATGTATCGATAAAATTCAAAATGTATCAATAC
Found at i:916768 original size:20 final size:20
Alignment explanation
Indices: 916715--916769 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
916705 AAATTCTCAG
* *
916715 ATGTATCGATACAATGATCA
1 ATGTATCGATACATTAATCA
916735 ATGTATCGATACATTAAGT-A
1 ATGTATCGATACATTAA-TCA
916755 ATGTATCGATACATT
1 ATGTATCGATACATT
916770 TCCTTGGTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATTAATCA
Found at i:917703 original size:52 final size:51
Alignment explanation
Indices: 917642--918479 Score: 522
Period size: 49 Copynumber: 17.9 Consensus size: 51
917632 ACATTGGGTT
* * * *
917642 TTAAAGATGACGAAGGTGCCAATATGCTGATTCAAGGTCAGCGATACTAGTC
1 TTAAAGATGAC-AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
** * *
917694 TTAAAGATGA-AA-GTGCCAATGCGCTGATTCAAGGCCAGTGACATTGGAC
1 TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
917743 TTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
1 TTAAAGATGAC-AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
** * *
917795 TTAAAGATGACAAAGACGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATGAC-AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
* *
917847 TTAAAGAT-A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGAC
1 TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
* * * *
917896 -T-----T-A-AAGGTGCCAATGTACTGATTCAAGGCCAGCGACATTGGTC
1 TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
* *
917939 TT-AA-A-GACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
* * * *
917987 TT----A--A-AA-GTGCCAATGTGCTGATTAAAGGCCAGCGACATTGGTC
1 TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
* * * * * *
918030 TTAAAGATGACAAAGGCGCCAATATGCTAATTCAAGGCCAACGATATTGGGC
1 TTAAAGATGAC-AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
* * *
918082 -T-----T----A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTC
1 TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
* * * *
918121 TT-AA-A-GACAAGGTGCCAATATGTTGATTCAAGGCCAGTGATATTGGAC
1 TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
* * * *
918169 -T-----T-A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACCTTGGTC
1 TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
** * * * *
918212 TTAAAGAT-A-AAGGCACCAATATGCTGATTTAAGGCCAGCGATATTGGGC
1 TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
* *
918261 -T-----T----A--TGCCAATATGCTGATTCAAGGCCAGCGACATTGGTC
1 TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
* * * *
918300 TT-AA-A-GACAAGGCGCCAATATGCTAATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
* * * * *
918348 -T-----T----A--TGCCAATATGCTAATTCAAGGCCAACAACATTGGTC
1 TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
* *
918387 TT-AA-A-GACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
* *
918435 TTAAAGATG--AAGGTGCCAATGTGCTGATTCAAGGCCATCGACATT
1 TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATT
918480 GGAGAGATAC
Statistics
Matches: 644, Mismatches: 83, Indels: 121
0.76 0.10 0.14
Matches are distributed among these distances:
39 92 0.14
40 3 0.00
41 3 0.00
43 110 0.17
44 5 0.01
45 1 0.00
46 5 0.01
47 4 0.01
48 136 0.21
49 146 0.23
50 3 0.00
51 7 0.01
52 129 0.20
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.24
Consensus pattern (51 bp):
TTAAAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC
Found at i:917985 original size:91 final size:90
Alignment explanation
Indices: 917812--918481 Score: 881
Period size: 87 Copynumber: 7.4 Consensus size: 90
917802 TGACAAAGAC
* * * * *
917812 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATTC
*
917877 AAGGCCAGCGACATTGGACTTAAAGGT
65 AAGGCCAGCGATATTGGACTTAAA-GT
*
917904 GCCAATGTACTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCA
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCA
917969 AGGCCAGCGATATTGGACTTAAAAGT
66 AGGCCAGCGATATTGGACTT-AAAGT
* * *
917995 GCCAATGTGCTGATTAAAGGCCAGCGACATTGGTCTTAAAGATGACAAAGGCGCCAATATGCTAA
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GAC-AAGGTGCCAATATGCTGA
* *
918060 TTCAAGGCCAACGATATTGGGCTT--A-T
62 TTCAAGGCCAGCGATATTGGACTTAAAGT
*
918086 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGTTGATTCA
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCA
*
918151 AGGCCAGTGATATTGGACTTAAAGGT
66 AGGCCAGCGATATTGGACTTAAA-GT
* * ** *
918177 GCCAATGTGCTGATTCAAGGCCAGCGACCTTGGTCTTAAAGATAAAGGCACCAATATGCTGATTT
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATTC
*
918242 AAGGCCAGCGATATTGGGCTT--A-T
65 AAGGCCAGCGATATTGGACTTAAAGT
* * *
918265 GCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGCGCCAATATGCTAATTCA
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCA
918330 AGGCCAGCGATATTGGACTT--A-T
66 AGGCCAGCGATATTGGACTTAAAGT
* * * *
918352 GCCAATATGCTAATTCAAGGCCAACAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCA
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCA
918417 AGGCCAGCGATATTGGACTTAAAGATGAAGGT
66 AGGCCAGCGATATTGGACTT----A--AA-GT
*
918449 GCCAATGTGCTGATTCAAGGCCATCGACATTGG
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGG
918482 AGAGATACCG
Statistics
Matches: 514, Mismatches: 44, Indels: 35
0.87 0.07 0.06
Matches are distributed among these distances:
87 156 0.30
88 44 0.09
89 2 0.00
90 3 0.01
91 156 0.30
92 80 0.16
93 1 0.00
94 3 0.01
95 39 0.08
97 30 0.06
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (90 bp):
GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCA
AGGCCAGCGATATTGGACTTAAAGT
Found at i:918102 original size:39 final size:40
Alignment explanation
Indices: 918047--918438 Score: 241
Period size: 48 Copynumber: 9.0 Consensus size: 40
918037 TGACAAAGGC
* * *
918047 GCCAATATGCTAATTCAAGGCCAACGATATTGGGCTT-AT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAT
* *
918086 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT------AA--T
* * *
918134 GCCAATATGTTGATTCAAGGCCAGTGATATTGGACTTAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT-AA--T
* **
918177 GCCAATGTGCTGATTCAAGGCCAGCGACCTTGGTCTTAAAGAT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT--A-AT
* *
918220 AAAGGCACCAATATGCTGATTTAAGGCCAGCGATATTGGGCTT-AT
1 ----G--CCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAT
* *
918265 GCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGC
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT------AA--T
* *
918313 GCCAATATGCTAATTCAAGGCCAGCGATATTGGACTT-AT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAT
* * * *
918352 GCCAATATGCTAATTCAAGGCCAACAACATTGGTCTTAAAGACAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT------AA--T
*
918400 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAA
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAA
918439 AGATGAAGGT
Statistics
Matches: 279, Mismatches: 39, Indels: 67
0.72 0.10 0.17
Matches are distributed among these distances:
39 98 0.35
41 2 0.01
42 2 0.01
43 37 0.13
44 2 0.01
45 3 0.01
46 3 0.01
47 1 0.00
48 100 0.36
49 31 0.11
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAT
Found at i:918482 original size:49 final size:48
Alignment explanation
Indices: 918351--918482 Score: 183
Period size: 48 Copynumber: 2.7 Consensus size: 48
918341 ATTGGACTTA
* * *
918351 TGCCAATATGCTAATTCAAGGCCAACAACATTGGTCTTAAAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAAGACAAGG
* * *
918399 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAAGA-CAAGG
* *
918448 TGCCAATGTGCTGATTCAAGGCCATCGACATTGGA
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGA
918483 GAGATACCGA
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
48 38 0.51
49 36 0.49
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (48 bp):
TGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAAGACAAGG
Found at i:919075 original size:79 final size:79
Alignment explanation
Indices: 918872--919204 Score: 272
Period size: 79 Copynumber: 4.2 Consensus size: 79
918862 GGATAACAAT
* * * * *
918872 GGGGCTGGAGTATCCTCGATTATGGAAAATCGGTG-TTATGAAAATAAAATCG-GGGTTAGAGTA
1 GGGGTTGGAGTATCCCCGAATATGGAAAATCGATGTTTA-G-AAATAAAATCGAGGGTTGGAGTA
918935 TCCCCTCGAAAATAAC
64 TCCCCTCGAAAATAAC
* * * * * * * * *
918951 AGGGTTGGAGTA-CCACTAATTATAGATAATTGGTGTTTTAAAAATAAAATC-AGGATTGGAGTA
1 GGGGTTGGAGTATCCCCGAA-TATGGAAAATCGATG-TTTAGAAATAAAATCGAGGGTTGGAGTA
919014 TCCCCTCGAAAATAAC
64 TCCCCTCGAAAATAAC
**
919030 GGGGTTGGAGTATCCCCGAATATGGAAAATCGATGCTTTAGAAAT-AAGGCTG-GGGTTGGAGTA
1 GGGGTTGGAGTATCCCCGAATATGGAAAATCGATG-TTTAGAAATAAAATC-GAGGGTTGGAGTA
* *
919093 TCTTCGT-GAAAATAAC
64 TC-CCCTCGAAAATAAC
* * * **
919109 AGGGTTGGAGTATCCCTGATTAT-GAGAAATCAAGAT-TTTAGAAATAAAGCCGA-GGTTGGAGT
1 GGGGTTGGAGTATCCCCGAATATGGA-AAATC--GATGTTTAGAAATAAAATCGAGGGTTGGAGT
* *
919171 ATCCCCTAGGAAATAAC
63 ATCCCCTCGAAAATAAC
*
919188 GGGGTTAGAGTATCCCC
1 GGGGTTGGAGTATCCCC
919205 AATTGTGAAA
Statistics
Matches: 205, Mismatches: 35, Indels: 28
0.76 0.13 0.10
Matches are distributed among these distances:
78 11 0.05
79 177 0.86
80 11 0.05
81 6 0.03
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.26
Consensus pattern (79 bp):
GGGGTTGGAGTATCCCCGAATATGGAAAATCGATGTTTAGAAATAAAATCGAGGGTTGGAGTATC
CCCTCGAAAATAAC
Found at i:921568 original size:20 final size:20
Alignment explanation
Indices: 921500--921568 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 20
921490 TGCCTAAATT
*
921500 TATCGATA-GATTGAAAAATG
1 TATCGATACGA-TGAACAATG
* *
921520 TATCGATACAATGAACCATG
1 TATCGATACGATGAACAATG
*
921540 TATCTATACGATGAACAATG
1 TATCGATACGATGAACAATG
921560 TATCGATAC
1 TATCGATAC
921569 AAATTGTGAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 40 0.98
21 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (20 bp):
TATCGATACGATGAACAATG
Found at i:922201 original size:41 final size:42
Alignment explanation
Indices: 922156--922399 Score: 205
Period size: 41 Copynumber: 5.8 Consensus size: 42
922146 GGAAGAGGGT
** *
922156 GTCCTGCTCTTTGAGGATTAAGG-AAAAGGAGAATGAAATG-A
1 GTCCTGCTCTTTGAGGACAAAGGAAAAAGGA-AATAAAATGCA
* *
922197 GTCCTGCTCCTTGAGGAC-AAGGAAGAAGGAAATAAAATGCA
1 GTCCTGCTCTTTGAGGACAAAGGAAAAAGGAAATAAAATGCA
* * * * *
922238 -TCATGCCCTTTGAAGACAAAGGAAAAAGGAAATTAAATG-T
1 GTCCTGCTCTTTGAGGACAAAGGAAAAAGGAAATAAAATGCA
* *
922278 GTCATGCTTTTTGAGGACAAAGGAAAAAGGAGAATAAAATGCA
1 GTCCTGCTCTTTGAGGACAAAGGAAAAAGGA-AATAAAATGCA
* * * *
922321 -TCCTGCTGTTTGAGAACTAGAAGGGAAAAGAAGGAAATGAAGTGCA
1 GTCCTGCTCTTTGAGGAC-A-AA-GG-AAA-AAGGAAATAAAATGCA
* *
922367 -TCCTACTCTTTGAGGGCAAAGGAGAAAAGGAAA
1 GTCCTGCTCTTTGAGGACAAAGGA-AAAAGGAAA
922400 AGGTGCCCTA
Statistics
Matches: 166, Mismatches: 25, Indels: 23
0.78 0.12 0.11
Matches are distributed among these distances:
40 25 0.15
41 69 0.42
42 30 0.18
43 5 0.03
44 4 0.02
45 3 0.02
46 25 0.15
47 5 0.03
ACGTcount: A:0.41, C:0.12, G:0.27, T:0.20
Consensus pattern (42 bp):
GTCCTGCTCTTTGAGGACAAAGGAAAAAGGAAATAAAATGCA
Found at i:922463 original size:61 final size:61
Alignment explanation
Indices: 922390--923343 Score: 805
Period size: 61 Copynumber: 15.7 Consensus size: 61
922380 GGGCAAAGGA
* * * * * * *
922390 GAAAAGGAAAAGGTGCCCTATTCCTTAAGGAATAAAAAGTGCCATCAACTCGTGTGGGCTT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTT
* ** * ** * **
922451 GAAAAGAAAAAGGCATCCTACTCTTTGAGGACTCAAGGGTGCTACCAACTTGTGTGATCTTT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGC-TT
* * * * *
922513 AAAAAGAAAAAGGTGTCCTACTTTTTGAGGACT-AGAGGTGCCACCAACTTGTGTGGGCTTT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGC-TT
* * * * * *
922574 GAAAA-GAAATGGTATCCTGCTCTTTAAGGACTAGAAAGGTGCCACCAACTTGTGTGGGATT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTA-AAAAGTGCCACCAACTTGTGTGGGCTT
* * ** * * *
922635 TAAATGGAAAAGGCATCCTGCTCCTTGAGGACTGAAAAGTGCCACCAACTTGTGT--GCTT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTT
* * *
922694 CAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTA-AAAAGTGCCACCAACTTGTGTGGGCTT
* * * * *
922756 TAAAAGGAAAAGGTGTCCTACTCCTTGAGGACTGAAAAGTGCCACCAACTTTTGTGGCCTT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTT
* *** * * * * *
922817 TAAAAGGAAAATACGTCCTATTCTTTAAGGACT-GAAGGTGCCACCAGCTTGTGTGGGCTT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTT
* * * * * *
922877 TAAAAGGAAAATGCGTCCTGCCCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTAT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCT-T
* ** ** * * * * *
922939 -AAAAGGAAATGGCATCCTACTCTTTGAGGA-TTGAAGGTGCCACTAGCTTATTTGGGCATT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGC-TT
* ** * * *
922999 -AAAAGGAATAGGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAGCTTGTGTGGGCTT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTT
* * * ** * * *
923058 TAAAAAGAAAAGGTGTCATGTTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTAGGCTT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTT
* * ** * * * *
923119 TAAAAGGACAAGGCATCTTGCTCTTTGAGGACTGAAAAGTGTCACCAACTTGTGTGGGCTT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTT
* ** * * * *
923180 TAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAAAATGCCACCAACTTCTGTCGGCTT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTA-AAAAGTGCCACCAACTTGTGTGGGCTT
* * * * * *
923242 TAAAAGGAAAATGCGTCCTTCTCTTTGAGGACTATAAAAATGCCACCAACTTCTGTGGGCTCT
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTA-AAAAGTGCCACCAACTTGTGTGGGCT-T
* * *
923305 --AAAGGGAAAGGTGTCCTGCTCTTTGAGGACTTAAAAGTG
1 GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAAAAAGTG
923344 AAAGGAGAAA
Statistics
Matches: 749, Mismatches: 129, Indels: 31
0.82 0.14 0.03
Matches are distributed among these distances:
59 34 0.05
60 194 0.26
61 330 0.44
62 190 0.25
63 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (61 bp):
GAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTT
Found at i:922752 original size:121 final size:122
Alignment explanation
Indices: 922424--923335 Score: 975
Period size: 121 Copynumber: 7.5 Consensus size: 122
922414 TTAAGGAATA
* * * * * * *
922424 AAAAGTGCCATCAACTCGTGTGGGCTTGAAAAGAAAAAGGCATCCTACTCTTTGAGGACT-CAAG
1 AAAAGTGCCACCAACTTGTGT-GGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAA
* ** * * * *
922488 GGTGCTACCAACTTGTGTGATCTTTAAAAAGAAAAAGGTGTCCTACTTTTTGAGGACT-
65 GGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTG
* * * * *
922546 AGAGGTGCCACCAACTTGTGTGGGCTTTGAAAA-GAAATGGTATCCTGCTCTTTAAGGACTAGAA
1 AAAAGTGCCACCAACTTGTGT-GGCTTT-AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAA
* * * *
922610 AGGTGCCACCAACTTGTGTGGGATTTAAATGGAAAAGGCATCCTGCTCCTTGAGGACTG
64 AGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTG
* * *
922669 AAAAGTGCCACCAACTTGTGT-GCTTCAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAA
1 AAAAGTGCCACCAACTTGTGTGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAAG
* * *
922733 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTACTCCTTGAGGACTG
66 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTG
* ** * ** *
922790 AAAAGTGCCACCAACTTTTGTGGCCTTTAAAAGGAAAATACGTCCTATTCTTTAAGGACT-G-AA
1 AAAAGTGCCACCAACTTGTGTGG-CTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAA
* * *
922853 GGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAATGCGTCCTGCCCTTTGAGGACT-
65 GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTG
* * * *
922910 AAAAGGTGCCACCAACTTGTGTGGGCTATAAAAGGAAATGGCATCCTACTCTTTGAGGA-TTG-A
1 AAAA-GTGCCACCAACTTGTGT-GGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAA
* * * * * * *
922973 AGGTGCCACTAGCTTATTTGGGCATTAAAAGGAATAGGCATCCTGCTCTTTGAGGACTG
64 AGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTG
* * ** * *
923032 -AAAGTGCCACCAGCTTGTGTGGGCTTTAAAAAGAAAAGGTGTCATGTTCTTTGAGGACTAG-AA
1 AAAAGTGCCACCAACTTGTGT-GGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAA
* * * *
923095 GGTGCCACCAACTTGTGTAGGCTTTAAAAGGACAAGGCATCTTGCTCTTTGAGGACTG
65 GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTG
*
923153 AAAAGTGTCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAA
1 AAAAGTGCCACCAACTTGTGT-GGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAA
** * * * * *
923218 AATGCCACCAACTTCTGTCGGCTTTAAAAGGAAAATGCGTCCTTCTCTTTGAGGACTAT
65 GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACT-G
* * * * **
923277 AAAAATGCCACCAACTTCTGTGGGCTCT-AAAGGGAAAGGTGTCCTGCTCTTTGAGGACT
1 AAAAGTGCCACCAACTTGTGT-GGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACT
923336 TAAAAGTGAA
Statistics
Matches: 667, Mismatches: 109, Indels: 27
0.83 0.14 0.03
Matches are distributed among these distances:
120 54 0.08
121 307 0.46
122 128 0.19
123 154 0.23
124 24 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (122 bp):
AAAAGTGCCACCAACTTGTGTGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAAG
GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTG
Found at i:924356 original size:13 final size:13
Alignment explanation
Indices: 924322--924356 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
924312 TTTTCTCTCC
*
924322 TTTTTCTTTGTTT
1 TTTTTTTTTGTTT
*
924335 TGTTTTTTTGTTT
1 TTTTTTTTTGTTT
924348 TTTTTTTTT
1 TTTTTTTTT
924357 AAAAAATGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.00, C:0.03, G:0.09, T:0.89
Consensus pattern (13 bp):
TTTTTTTTTGTTT
Found at i:932464 original size:33 final size:33
Alignment explanation
Indices: 932427--932493 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
932417 TTCAACGATT
932427 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
932460 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
932493 T
1 T
932494 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:932465 original size:13 final size:13
Alignment explanation
Indices: 932447--932471 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
932437 CATAAAATGT
932447 TGTATCGATACAA
1 TGTATCGATACAA
932460 TGTATCGATACA
1 TGTATCGATACA
932472 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:932552 original size:13 final size:13
Alignment explanation
Indices: 932534--932558 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
932524 ATTACTCAAA
932534 TGTATCGATACAT
1 TGTATCGATACAT
932547 TGTATCGATACA
1 TGTATCGATACA
932559 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:932660 original size:52 final size:52
Alignment explanation
Indices: 932567--932694 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
932557 CACTGATCTT
*
932567 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
932618 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
932670 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
932695 TCATATTTCG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 19 0.26
52 52 0.70
53 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:938259 original size:42 final size:43
Alignment explanation
Indices: 938211--938306 Score: 104
Period size: 43 Copynumber: 2.3 Consensus size: 43
938201 TGACTGATGC
* * * *
938211 AAGAAGTTTCCTGGGCCTGA-ACGACGGGTAGACAATTAATGA
1 AAGAAGTTTCCTCGGACTGAGACGACGAGCAGACAATTAATGA
* * **
938253 AAGAAGTCTCCTCGGACTGAGATGACGAGCAGATGATTAATGA
1 AAGAAGTTTCCTCGGACTGAGACGACGAGCAGACAATTAATGA
*
938296 AGGAAGTTTCC
1 AAGAAGTTTCC
938307 CGAGACTAAG
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
42 17 0.40
43 26 0.60
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (43 bp):
AAGAAGTTTCCTCGGACTGAGACGACGAGCAGACAATTAATGA
Found at i:938595 original size:43 final size:42
Alignment explanation
Indices: 938525--938661 Score: 132
Period size: 43 Copynumber: 3.2 Consensus size: 42
938515 AGTCTCCCTA
* ** * * *
938525 TCTAAGCTTATAGGCAGAGGAAGGATAATGAAGGTCTCTCGGG
1 TCTAAGCTAATAGGCAGACAAAAGATAAAGAA-GTCTCTTGGG
*
938568 TCTAAGCTAATAGGCAGACAAAAGATAAAGAAAGTCTCTTAGG
1 TCTAAGCTAATAGGCAGACAAAAGATAAAG-AAGTCTCTTGGG
* * * *
938611 TCTAAGTCGACTA-GTAGACAAAAGATAAAGGAAATCTCTTGGG
1 TCTAAG-CTAATAGGCAGACAAAAGATAAA-GAAGTCTCTTGGG
938654 TCTAAGCT
1 TCTAAGCT
938662 GACGAACGGA
Statistics
Matches: 78, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
42 1 0.01
43 70 0.90
44 7 0.09
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (42 bp):
TCTAAGCTAATAGGCAGACAAAAGATAAAGAAGTCTCTTGGG
Found at i:938674 original size:43 final size:44
Alignment explanation
Indices: 938582--938685 Score: 115
Period size: 43 Copynumber: 2.4 Consensus size: 44
938572 AGCTAATAGG
* *
938582 CAGACAAAAGATAAA-GAAAGTCTCTTAGGTCTAAGTCGACTAG
1 CAGACAAAAGATAAAGGAAAGTCTCTTAGGTCTAAGTCGACGAA
* *
938625 TAGACAAAAGATAAAGGAAA-TCTCTTGGGTCTAAG-CTGACGAA
1 CAGACAAAAGATAAAGGAAAGTCTCTTAGGTCTAAGTC-GACGAA
* * *
938668 CGGACAAATGTTAAAGGA
1 CAGACAAAAGATAAAGGA
938686 GTCAAGAGTG
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 1 0.02
43 46 0.90
44 4 0.08
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (44 bp):
CAGACAAAAGATAAAGGAAAGTCTCTTAGGTCTAAGTCGACGAA
Found at i:939198 original size:47 final size:47
Alignment explanation
Indices: 938851--939197 Score: 242
Period size: 47 Copynumber: 7.4 Consensus size: 47
938841 AAGGGGGAAG
* * * *
938851 AGTTTGACCAGGTCCTAATGCTAGTAAAGTCAAACAAAGGTG-AGAA
1 AGTTTGACCAGGTCCTAATGCCAATACAGTCAAACAATGGTGAAGAA
* ** * *
938897 GAGTTTGACCAGGTCCTAAAGCCAATACAGTCAAATGAGGGTGAGGAA
1 -AGTTTGACCAGGTCCTAATGCCAATACAGTCAAACAATGGTGAAGAA
* * ** *
938945 AGTTTGACTAGGTCCTAATGCCAATATAGTCAAATGATGGAG-AGAAA
1 AGTTTGACCAGGTCCTAATGCCAATACAGTCAAACAATGGTGAAG-AA
* * *
938992 AGTATGACCAGGTCCTAATGCCAATACAATCAAACGA-GGTGAA-AA
1 AGTTTGACCAGGTCCTAATGCCAATACAGTCAAACAATGGTGAAGAA
* * * * * * * *
939037 GAGCTTGGCCAAGTTCTAATGCCAATATAGTTAAACGACAT-G-AAAAAA
1 -AGTTTGACCAGGTCCTAATGCCAATACAGTCAAAC-A-ATGGTGAAGAA
* * * * * *
939085 ACATTTGACCATGTCTTAATGCTAATATAGTCAAAGAATGGT-AAGAAA
1 A-GTTTGACCAGGTCCTAATGCCAATACAGTCAAACAATGGTGAAG-AA
* * * *
939133 AGTTTGA-CTGGTTCCTAACGCTAATACAATCAAACAATGGTGAAGAA
1 AGTTTGACCAGG-TCCTAATGCCAATACAGTCAAACAATGGTGAAGAA
*
939180 AGTTTAACCAGGTCCTAA
1 AGTTTGACCAGGTCCTAA
939198 CACTAATACA
Statistics
Matches: 235, Mismatches: 50, Indels: 30
0.75 0.16 0.10
Matches are distributed among these distances:
45 2 0.01
46 35 0.15
47 157 0.67
48 41 0.17
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.23
Consensus pattern (47 bp):
AGTTTGACCAGGTCCTAATGCCAATACAGTCAAACAATGGTGAAGAA
Found at i:940419 original size:158 final size:158
Alignment explanation
Indices: 940185--940481 Score: 386
Period size: 158 Copynumber: 1.9 Consensus size: 158
940175 GGGATAACAA
* * * *
940185 CGGGGCTGGAGTATCCCCTCGGAAATAACAAGGTTGGAGTACCCCTGATTATAGATAATCGATGT
1 CGGGGCTGGAGTATCCCCGCGAAAATAACAAGGTTGGAGTACCCCTGATTATAGATAATCAATAT
* ** *
940250 TTTGAAAATAAAATCGGGGTTAGAGTATCCCCTCGAAAATATTGGGGTTGGAGTATCCCCAATTG
66 TTTGAAAATAAAACCGGGGTTAGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCAATTG
940315 TGAAAAATCAATACTTTAGAAATAAGGC
131 TGAAAAATCAATACTTTAGAAATAAGGC
* * *
940343 CGGGGTTGGAGTATCCCCGCGAAAATAAC-GGGTTTGGAGTATCCCC-GATTGTGAGA-AATCAA
1 CGGGGCTGGAGTATCCCCGCGAAAATAACAAGG-TTGGAGTA-CCCCTGATTAT-AGATAATCAA
* * * **
940405 TATTTT-AGAAATAAAGCCGGGGTTAGAGTATCCCCTTGGAAATAACGAGGTTGGAGTATCCCTG
63 TATTTTGA-AAATAAAACCGGGGTTAGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCA
940469 ATTGTGAAAAATC
127 ATTGTGAAAAATC
940482 TAGAATTTAA
Statistics
Matches: 119, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
157 3 0.03
158 109 0.92
159 7 0.06
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (158 bp):
CGGGGCTGGAGTATCCCCGCGAAAATAACAAGGTTGGAGTACCCCTGATTATAGATAATCAATAT
TTTGAAAATAAAACCGGGGTTAGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCAATTG
TGAAAAATCAATACTTTAGAAATAAGGC
Found at i:940481 original size:79 final size:79
Alignment explanation
Indices: 940193--940481 Score: 334
Period size: 79 Copynumber: 3.7 Consensus size: 79
940183 AACGGGGCTG
* * * * * *
940193 GAGTATCCCCTCGGAAATAACAAGGTTGGAGTA-CCCCTGATTAT-AGATAATCGATGTTTT-GA
1 GAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCC-GATTGTGA-AAAATCAATATTTTAG-
**
940255 AAATAAAATCGGGGTTA
63 AAATAAAGCCGGGGTTA
** * * *
940272 GAGTATCCCCTCGAAAATATTGGGGTTGGAGTATCCCCAATTGTGAAAAATCAATACTTTAGAAA
1 GAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAA
* *
940337 TAAGGCCGGGGTTG
66 TAAAGCCGGGGTTA
* *
940351 GAGTATCCCCGCGAAAATAACG-GGTTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAA
1 GAGTATCCCCTCGAAAATAACGAGG-TTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAA
940415 ATAAAGCCGGGGTTA
65 ATAAAGCCGGGGTTA
* * *
940430 GAGTATCCCCTTGGAAATAACGAGGTTGGAGTATCCCTGATTGTGAAAAATC
1 GAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATC
940482 TAGAATTTAA
Statistics
Matches: 177, Mismatches: 28, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
78 2 0.01
79 167 0.94
80 8 0.05
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.27
Consensus pattern (79 bp):
GAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAA
TAAAGCCGGGGTTA
Found at i:941897 original size:20 final size:20
Alignment explanation
Indices: 941845--941899 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
941835 GTAAACCTAA
* *
941845 AATGTATCGATACAGTGAAC
1 AATGTATCGATATAATGAAC
*
941865 CATGTATCGATATAATGAAC
1 AATGTATCGATATAATGAAC
941885 AATGTATCGATATAA
1 AATGTATCGATATAA
941900 ATTGTGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (20 bp):
AATGTATCGATATAATGAAC
Found at i:944300 original size:17 final size:16
Alignment explanation
Indices: 944263--944323 Score: 65
Period size: 16 Copynumber: 3.8 Consensus size: 16
944253 TTACTACCTC
944263 CATTTTTCTTTTTCATTT
1 CATTTTTC-TTTTC-TTT
944281 CATGTTTT-TTCTTCTTT
1 CAT-TTTTCTT-TTCTTT
944298 CATTTTTCTTTTCTTT
1 CATTTTTCTTTTCTTT
944314 C--TTTTCTTTT
1 CATTTTTCTTTT
944324 TTAAGAGGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
14 9 0.22
16 11 0.28
17 10 0.25
18 6 0.15
19 4 0.10
ACGTcount: A:0.07, C:0.18, G:0.02, T:0.74
Consensus pattern (16 bp):
CATTTTTCTTTTCTTT
Found at i:944324 original size:20 final size:19
Alignment explanation
Indices: 944263--944317 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 19
944253 TTACTACCTC
944263 CATTTTTC-TTT-TTCATTT
1 CATTTTTCTTTTCTTC-TTT
*
944281 CA-TGTT-TTTTCTTCTTT
1 CATTTTTCTTTTCTTCTTT
944298 CATTTTTCTTTTCTTTCTTT
1 CATTTTTCTTTTC-TTCTTT
944318 TCTTTTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 11 0.37
18 8 0.27
19 5 0.17
20 6 0.20
ACGTcount: A:0.07, C:0.18, G:0.02, T:0.73
Consensus pattern (19 bp):
CATTTTTCTTTTCTTCTTT
Found at i:950273 original size:167 final size:166
Alignment explanation
Indices: 950066--950416 Score: 495
Period size: 167 Copynumber: 2.1 Consensus size: 166
950056 AAATTGAATT
* * *
950066 TTTCAAAAATGAATTAATGGGAGTTTAACAACAATATTAGATACATTCTAAAAATTTTAGACCAA
1 TTTCAAAAATGATTTAATGGGAATTTAACAACAATATTAGATACATTCTAAAAATTTTAAACCAA
* * *
950131 AGAAAATCCCCCCGAAAATATTTATGGATTAGAAAACTTAATTTTTCAGGAAAAAGGAGATTTCA
66 AGAAAATCCCCCCGAAAATATTTATGGATGAGAAAACTCAATTTTTCAAG-AAAAGGAGATTTCA
* *
950196 AAGAAAAAAATCCAAAATTCATGAAAATGAATTAAAC
130 AAGAAAAAAATCCAAAACTCATGAAAATGAATGAAAC
* * ** * * * *
950233 TTTCAAAACTGATTTAATGGGAATTTCATGACATTATTAGATATATTTTAAAAATTTTAAACTAA
1 TTTCAAAAATGATTTAATGGGAATTTAACAACAATATTAGATACATTCTAAAAATTTTAAACCAA
* *
950298 AGAAAATCCCCCCGAAAATATTTATGGATGAGAAAACTCAGTTTTTCAAGAAAAGGGGATTTCAA
66 AGAAAATCCCCCCGAAAATATTTATGGATGAGAAAACTCAATTTTTCAAGAAAAGGAGATTTCAA
**
950363 AGAAAAAAATCCAAAACTCATGAAAATGAATGAATT
131 AGAAAAAAATCCAAAACTCATGAAAATGAATGAAAC
* *
950399 TTTTAAAATTGATTTAAT
1 TTTCAAAAATGATTTAAT
950417 ATGAAATAAA
Statistics
Matches: 162, Mismatches: 22, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
166 62 0.38
167 100 0.62
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.30
Consensus pattern (166 bp):
TTTCAAAAATGATTTAATGGGAATTTAACAACAATATTAGATACATTCTAAAAATTTTAAACCAA
AGAAAATCCCCCCGAAAATATTTATGGATGAGAAAACTCAATTTTTCAAGAAAAGGAGATTTCAA
AGAAAAAAATCCAAAACTCATGAAAATGAATGAAAC
Found at i:950452 original size:166 final size:165
Alignment explanation
Indices: 950114--950617 Score: 500
Period size: 165 Copynumber: 3.0 Consensus size: 165
950104 AGATACATTC
* * *
950114 TAAAAATTTTAGACCAAAGAAAATCCCCCCGAAAATATTTATGGATTAGAAAACTTAATTTTTCA
1 TAAAAATTTTA-AACAAAGAAAATCCCCCCGAAAATATTTATGGATGAGAAAACTCAATTTTTCA
* * * * **
950179 GGAAAAAGGAGATTTCAAAGAAAAAAATCCAAAATTCATGAAAATGAATTAAACTTTCAAAACTG
65 AG-AAAAGGGGATTTCAAAGAAAAAAATCCAAAACTCATGAAAATGAATGAATTTTTCAAAACTG
** * ** * * * * **
950244 ATTTAATGGGAATTTCATGACATTATTAGATATATTT
129 ATTTAATATGAAATAAATAATAATATTTGATGGATTT
*
950281 TAAAAATTTTAAACTAAAGAAAATCCCCCCGAAAATATTTATGGATGAGAAAACTCAGTTTTTCA
1 TAAAAATTTTAAAC-AAAGAAAATCCCCCCGAAAATATTTATGGATGAGAAAACTCAATTTTTCA
* *
950346 AGAAAAGGGGATTTCAAAGAAAAAAATCCAAAACTCATGAAAATGAATGAATTTTTTAAAATTGA
65 AGAAAAGGGGATTTCAAAGAAAAAAATCCAAAACTCATGAAAATGAATGAATTTTTCAAAACTGA
950411 TTTAATATGAAATAAATAATAATATTTGATGGATTT
130 TTTAATATGAAATAAATAATAATATTTGATGGATTT
* * *** * ** *
950447 TAAAAA-TTAAAACCAAGAAAAATCCCTATG-AAATAAATTACAGA-GTAGAAAACTC-CTTTTT
1 TAAAAATTTTAAACAAAG-AAAATCCCCCCGAAAAT-ATTTATGGATG-AGAAAACTCAATTTTT
* * * * * *
950508 CGAA-AATAGGAGAATTTCAAAG-AGAAAATCCAAAAACCCACGAAAATGAATGAATTTTTGAAA
63 C-AAGAAAAGG-GGATTTCAAAGAAAAAAATCC-AAAACTCATGAAAATGAATGAATTTTTCAAA
* *
950571 ACTAATTTAATAT-AGAATAAATAATAATATTTTATGGATTT
125 ACTGATTTAATATGA-AATAAATAATAATATTTGATGGATTT
*
950612 CAAAAA
1 TAAAAA
950618 ATTAAAAATT
Statistics
Matches: 287, Mismatches: 42, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
164 28 0.10
165 111 0.39
166 89 0.31
167 59 0.21
ACGTcount: A:0.48, C:0.11, G:0.12, T:0.29
Consensus pattern (165 bp):
TAAAAATTTTAAACAAAGAAAATCCCCCCGAAAATATTTATGGATGAGAAAACTCAATTTTTCAA
GAAAAGGGGATTTCAAAGAAAAAAATCCAAAACTCATGAAAATGAATGAATTTTTCAAAACTGAT
TTAATATGAAATAAATAATAATATTTGATGGATTT
Found at i:952671 original size:58 final size:58
Alignment explanation
Indices: 952540--952677 Score: 204
Period size: 58 Copynumber: 2.4 Consensus size: 58
952530 AAAAATCGAT
* * * * *
952540 ATAGCTAGCCATGTTATAAGTCTAGCATAGTTTGGCCATAGAGAAAGAAAAACCCAAC
1 ATAGCTAGCCATGTTGTAAGCCCAGCAAAGTTGGGCCATAGAGAAAGAAAAACCCAAC
* *
952598 ATAGCTAGCCATGTTGTAAGCCCAGCAAAGTTGGGCCATAGAGAAAGAAAAGCCTAAC
1 ATAGCTAGCCATGTTGTAAGCCCAGCAAAGTTGGGCCATAGAGAAAGAAAAACCCAAC
*
952656 ATAGCTAGCCATGTTGCAAGCC
1 ATAGCTAGCCATGTTGTAAGCC
952678 TAATGAAGTA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 72 1.00
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (58 bp):
ATAGCTAGCCATGTTGTAAGCCCAGCAAAGTTGGGCCATAGAGAAAGAAAAACCCAAC
Found at i:953212 original size:52 final size:52
Alignment explanation
Indices: 953073--953212 Score: 185
Period size: 52 Copynumber: 2.7 Consensus size: 52
953063 TTTGGAAAGG
* *
953073 AAATGTATCGATACATTTTTCATTGTATCGATACAATCTTGGTTTTTGACCC
1 AAATGTATAGATACATTTTTCATTGTATCGATACATTCTTGGTTTTTGACCC
* *
953125 AAATATATTA-ATACATTTTTCATTGTATCGATACATTC-TGAGTTTTTGACCT
1 AAATGTA-TAGATACATTTTTCATTGTATCGATACATTCTTG-GTTTTTGACCC
* * *
953177 AAATGTATAGATACATTCTTCAATGTATGGATACAT
1 AAATGTATAGATACATTTTTCATTGTATCGATACAT
953213 GTAGGCAATT
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
51 4 0.05
52 72 0.94
53 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.42
Consensus pattern (52 bp):
AAATGTATAGATACATTTTTCATTGTATCGATACATTCTTGGTTTTTGACCC
Found at i:954103 original size:20 final size:21
Alignment explanation
Indices: 954078--954116 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
954068 TCTTAACAGC
954078 CCATGTT-CATGCATTTTATG
1 CCATGTTCCATGCATTTTATG
954098 CCATGTTCCATGCATTTTA
1 CCATGTTCCATGCATTTTA
954117 ACATGTCCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.44
Consensus pattern (21 bp):
CCATGTTCCATGCATTTTATG
Found at i:957568 original size:23 final size:24
Alignment explanation
Indices: 957520--957568 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
957510 CCTAGAAAGT
957520 ATCGATACATATTACTTAGTATCG
1 ATCGATACATATTACTTAGTATCG
* *
957544 ATCGATACATGTT-CTTCGTATCG
1 ATCGATACATATTACTTAGTATCG
957567 AT
1 AT
957569 ACACAACGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (24 bp):
ATCGATACATATTACTTAGTATCG
Found at i:960511 original size:19 final size:19
Alignment explanation
Indices: 960487--960543 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
960477 TGTATGGATA
*
960487 CATTGTATCGATACATGTT
1 CATTGTATCGATACATGAT
*
960506 CATTGTATCGATACATACAT
1 CATTGTATCGATACAT-GAT
*
960526 AATTGTATCGATACATGA
1 CATTGTATCGATACATGA
960544 AACTGGCAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (19 bp):
CATTGTATCGATACATGAT
Found at i:960532 original size:20 final size:19
Alignment explanation
Indices: 960488--960541 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 19
960478 GTATGGATAC
** *
960488 ATTGTATCGATACATGTTC
1 ATTGTATCGATACATCATA
960507 ATTGTATCGATACATACATA
1 ATTGTATCGATACAT-CATA
960527 ATTGTATCGATACAT
1 ATTGTATCGATACAT
960542 GAAACTGGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (19 bp):
ATTGTATCGATACATCATA
Found at i:960532 original size:52 final size:53
Alignment explanation
Indices: 960439--960541 Score: 129
Period size: 52 Copynumber: 2.0 Consensus size: 53
960429 CCCTTGAAAA
** *
960439 TATCGATACATATCCAGATGTATCGATACATCATGCTTTGTATGGATACATTG
1 TATCGATACATATCCAGATGTATCGATACATCATGAATTGTATCGATACATTG
* * *
960492 TATCGATACATGTTCA-TTGTATCGATACATACAT-AATTGTATCGATACAT
1 TATCGATACATATCCAGATGTATCGATACAT-CATGAATTGTATCGATACAT
960542 GAAACTGGCA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
52 26 0.60
53 17 0.40
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.37
Consensus pattern (53 bp):
TATCGATACATATCCAGATGTATCGATACATCATGAATTGTATCGATACATTG
Found at i:969098 original size:20 final size:20
Alignment explanation
Indices: 969073--969199 Score: 112
Period size: 20 Copynumber: 5.8 Consensus size: 20
969063 GTAAAAAGAC
969073 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
* *
969093 AGAATGTATCCATACATTCA
1 AGAATGTATCGATACATTGA
*
969113 CA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
969133 AGAATGTATCGATACATCTAGGTAAAAGA
1 AGAATGTATCGATACA--T---T----GA
969162 CAGAATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
*
969183 AAAATGTATCGATACAT
1 AGAATGTATCGATACAT
969200 CTAGGTAAAA
Statistics
Matches: 88, Mismatches: 7, Indels: 24
0.74 0.06 0.20
Matches are distributed among these distances:
19 1 0.01
20 62 0.70
21 3 0.03
22 1 0.01
25 2 0.02
28 1 0.01
29 2 0.02
30 16 0.18
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:969198 original size:90 final size:91
Alignment explanation
Indices: 969025--969199 Score: 282
Period size: 90 Copynumber: 1.9 Consensus size: 91
969015 TTTTAACTAG
* *
969025 ATGTATTGATACATTGAAAAATGTATCGATACAGTTGGGTAAAAAGACAGAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACAGTTAGGTAAAAAGACAGAATGTATCGATACAT
*
969090 TGAAGAATGTATCCATACATTCACAC
66 TGAAAAATGTATCCATACATTCACAC
*
969116 ATGTATCGATACATTGAAGAATGTATCGATACA-TCTAGGT-AAAAGACAGAATGTATCGATACA
1 ATGTATCGATACATTGAAAAATGTATCGATACAGT-TAGGTAAAAAGACAGAATGTATCGATACA
*
969179 TTGAAAAATGTATCGATACAT
65 TTGAAAAATGTATCCATACAT
969200 CTAGGTAAAA
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
90 43 0.55
91 35 0.45
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.29
Consensus pattern (91 bp):
ATGTATCGATACATTGAAAAATGTATCGATACAGTTAGGTAAAAAGACAGAATGTATCGATACAT
TGAAAAATGTATCCATACATTCACAC
Found at i:971182 original size:13 final size:13
Alignment explanation
Indices: 971164--971189 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
971154 CATCATGCTT
971164 TTGTATCGATACA
1 TTGTATCGATACA
971177 TTGTATCGATACA
1 TTGTATCGATACA
971190 AGTTCATTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:973104 original size:106 final size:106
Alignment explanation
Indices: 972919--973127 Score: 330
Period size: 106 Copynumber: 2.0 Consensus size: 106
972909 ACCATGCAAG
* * * *
972919 GTGGTTGTTTGGAGGCTAAGGCTACCTGCATTTTGAAAATGCTGACTTGTCCTTTAGTGGGTTAT
1 GTGGTTGTCTGGAGGCTAAGGCTACCTACATTCTGAAAATGCTGACTTGTCCTTTAGTAGGTTAT
*
972984 TAATTTTCAAGAAAATGACTTTTGGCCTTTTGAAAATTAAA
66 TAATTTTCAAGAAAATGACTTATGGCCTTTTGAAAATTAAA
* *
973025 GTGGTTGTCTGGAGGTTGAGGCTACCTACATTCTGAAAATGCTGACTTGTCCTTTAGTAGGTTAT
1 GTGGTTGTCTGGAGGCTAAGGCTACCTACATTCTGAAAATGCTGACTTGTCCTTTAGTAGGTTAT
*
973090 TAATTCTT-AAGAAAATGACTTATGGCCTTTTGCAAATT
66 TAATT-TTCAAGAAAATGACTTATGGCCTTTTGAAAATT
973128 TGGTTTTGAA
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
106 92 0.98
107 2 0.02
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.38
Consensus pattern (106 bp):
GTGGTTGTCTGGAGGCTAAGGCTACCTACATTCTGAAAATGCTGACTTGTCCTTTAGTAGGTTAT
TAATTTTCAAGAAAATGACTTATGGCCTTTTGAAAATTAAA
Found at i:973349 original size:20 final size:20
Alignment explanation
Indices: 973324--973396 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
973314 AAAACCTAGA
**
973324 ATGTATCGATACATTTAAGT
1 ATGTATCGATACATTTACCT
* * *
973344 ATGTATTGATACATTCACTT
1 ATGTATCGATACATTTACCT
*
973364 ATGTATCAATACA-TTACCT
1 ATGTATCGATACATTTACCT
973383 ATTGTATCGATACA
1 A-TGTATCGATACA
973397 AATTGTAAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
19 5 0.12
20 38 0.88
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTACCT
Found at i:974131 original size:65 final size:65
Alignment explanation
Indices: 973855--974265 Score: 346
Period size: 65 Copynumber: 6.3 Consensus size: 65
973845 AGTAGATAGG
* * * * *
973855 TGCCACTAACTTGTGTAGGCTTTAAGAA-AAAAAG-G--AT-TCTTTCTTTTTGAGGACTAAAAA
1 TGCCACCAACTTGTGTGGGCTTTAA-AAGAAAAAGAGAAATGTCCTGCTCTTTGAGGACT--AAA
973915 AGA
63 AGA
* * *
973918 GTGCCACTAACTTATGTGGGCTTTTAAAAAGAAAAAGGAAAAAATACGTCCTGCTCTTTGAGGAC
1 -TGCCACCAACTTGTGTGGGC-TTT-AAAAGAAAAA-G-AGAAAT--GTCCTGCTCTTTGAGGAC
973983 TAAAAAGA
59 T-AAAAGA
* * *
973991 GTGCCACCAACTTGTGTGAGCTTTAAAAG-GAAA-AGACA--TCCTGCTCTTTGAGGACTAAAAG
1 -TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAGAAATGTCCTGCTCTTTGAGGACTAAAAG
*
974052 G
65 A
* * *
974053 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAGAAATGTCCTACTCTATGAGGACTAGAAGA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAGAAATGTCCTGCTCTTTGAGGACTAAAAGA
* * * ** * * *
974118 TGCCACTAGCTTGTGTGAGCTTTATAAA-AAAAA-AGGCA--TCTTGCTTTTTAAGGACTAAAAG
1 TGCCACCAACTTGTGTGGGCTTTA-AAAGAAAAAGAGAAATGTCCTGCTCTTTGAGGACTAAAAG
*
974179 G
65 A
* * * * *
974180 TGCCACCAGCTGGTGTGGGCTTTAAAAGAAAACGAAAAATGTCCTGCTCTTTGAGGACTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAGAAATGTCCTGCTCTTTGAGGACTAAAAGA
974245 TG-CACCAACTTGTGTGGGCTT
1 TGCCACCAACTTGTGTGGGCTT
974266 AGGTGCCACC
Statistics
Matches: 283, Mismatches: 44, Indels: 40
0.77 0.12 0.11
Matches are distributed among these distances:
61 30 0.11
62 50 0.18
63 24 0.08
64 38 0.13
65 74 0.26
66 10 0.04
67 4 0.01
70 3 0.01
71 7 0.02
72 3 0.01
73 25 0.09
74 15 0.05
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.27
Consensus pattern (65 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAGAAATGTCCTGCTCTTTGAGGACTAAAAGA
Found at i:974196 original size:127 final size:126
Alignment explanation
Indices: 973855--974265 Score: 477
Period size: 127 Copynumber: 3.2 Consensus size: 126
973845 AGTAGATAGG
* * *
973855 TGCCACTAACTTGTGT-AGGCTTTAAGAAAAAAAGG-ATTCTTTCTTTTTGAGGACTAAAAAAGA
1 TGCCACCAACTTGTGTGA-GCTTTAAAAAAAAAAGGCA-TCTTGCTTTTTGAGGACT--AAAAG-
* *
973918 GTGCCACTAACTTATGTGGGCTTTTAAAAAGAAAAAGGAAAAAATACGTCCTGCTCTTTGAGGAC
61 GTGCCACCAACTTGTGTGGGC-TTT-AAAAGAAAAA-G-AAAAAT--GTCCTGCTCTTTGAGGAC
973983 TAAAAAGA
120 T-AAAAGA
** * * *
973991 GTGCCACCAACTTGTGTGAGCTTTAAAAGGAAAAGACATCCTGCTCTTTGAGGACTAAAAGGTGC
1 -TGCCACCAACTTGTGTGAGCTTTAAAAAAAAAAGGCATCTTGCTTTTTGAGGACTAAAAGGTGC
* * * *
974056 CACCAACTTGTGTGGGCTTTAAAAGAAAAAGAGAAATGTCCTACTCTATGAGGACTAGAAGA
65 CACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAATGTCCTGCTCTTTGAGGACTAAAAGA
* * *
974118 TGCCACTAGCTTGTGTGAGCTTTATAAAAAAAAAGGCATCTTGCTTTTTAAGGACTAAAAGGTGC
1 TGCCACCAACTTGTGTGAGCTTTA-AAAAAAAAAGGCATCTTGCTTTTTGAGGACTAAAAGGTGC
* * * *
974183 CACCAGCTGGTGTGGGCTTTAAAAGAAAACGAAAAATGTCCTGCTCTTTGAGGACTAAAAGG
65 CACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAATGTCCTGCTCTTTGAGGACTAAAAGA
*
974245 TG-CACCAACTTGTGTGGGCTT
1 TGCCACCAACTTGTGTGAGCTT
974266 AGGTGCCACC
Statistics
Matches: 238, Mismatches: 33, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
126 38 0.16
127 95 0.40
128 17 0.07
130 5 0.02
131 1 0.00
132 10 0.04
133 3 0.01
134 19 0.08
135 5 0.02
137 43 0.18
138 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.27
Consensus pattern (126 bp):
TGCCACCAACTTGTGTGAGCTTTAAAAAAAAAAGGCATCTTGCTTTTTGAGGACTAAAAGGTGCC
ACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAATGTCCTGCTCTTTGAGGACTAAAAGA
Found at i:974323 original size:84 final size:88
Alignment explanation
Indices: 974177--974350 Score: 230
Period size: 84 Copynumber: 2.0 Consensus size: 88
974167 AAGGACTAAA
* * *
974177 AGGTGCCACCAGCTGGTGTGGGCTTTAAAAGAAAACGAAAAATGTCCTGCTCTTTGAGGACTAAA
1 AGGTGCCACCAACTGGTGTGGGCTTTAAAAG-AAAC-AAAAACGTCCTCCTCTTTGAGGACTAAA
*
974242 AGGTG-CACCAACTTGTGTGGGCTT
64 AGATGCCACCAACTTGTGTGGGCTT
* *
974266 AGGTGCCACCAACTTGTGT-GGCTTTGAAAG-AA-AAAAACGTCCTCCTCTTTGAGGACTAAAAG
1 AGGTGCCACCAACTGGTGTGGGCTTTAAAAGAAACAAAAACGTCCTCCTCTTTGAGGACTAAAAG
* *
974328 ATGCCACTAGCTTGTGTGGGCTT
66 ATGCCACCAACTTGTGTGGGCTT
974351 TTAAAGGAAA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
84 30 0.39
85 17 0.22
86 2 0.03
88 10 0.13
89 17 0.22
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (88 bp):
AGGTGCCACCAACTGGTGTGGGCTTTAAAAGAAACAAAAACGTCCTCCTCTTTGAGGACTAAAAG
ATGCCACCAACTTGTGTGGGCTT
Found at i:974479 original size:270 final size:273
Alignment explanation
Indices: 973991--974536 Score: 703
Period size: 270 Copynumber: 2.0 Consensus size: 273
973981 ACTAAAAAGA
* * * *
973991 GTGCCACCAACTTGTGTGAGCTTTAAAAGGAAAAGACATCCTGCTCTTTGAGGACTAAAAGGTGC
1 GTGCCACCAACTTGTGTGAGCTTTAAAAGAAAAAAACATCCTCCTCTTTGAGGACTAAAAGATGC
* *
974056 CACCAACTTGTGTGGGCTTTAAAAGAAAAAGAGAAATGTCCTACTCTATGAGGACTAGAAGATGC
66 CACCAACTTGTGTGGGCTTTAAAAG----AGAGAAATGTCCTACTCTATAAGGACTAAAAGATGC
* * *
974121 CACTAGCTTGTGTGAGCTTTATAAAAAAAAAGGCATCTTGCTTTTTAAGGACTAAAAGGTGCCAC
127 CACCAACTTGTGTGAGCTTTATAAAAAAAAAGGCATCCTGCTTTTTAAGGACTAAAAGGTGCCAC
*
974186 CAGCTGGTGTGGGCTTTAAAAGAAAACGAAAA-ATGTCCTGCTCTTTGAGGACTAAAAGGTG-CA
192 CAGCTGGTGTGGGCTTTAAAAGAAAA--AAAACATGTCCTGCTCTTTGAAGACTAAAAGGTGCCA
*
974249 CCAACTTGTGTGGGCTTAG
255 CCAACTTGTGTAGGCTTAG
* *
974268 GTGCCACCAACTTGTGTG-GCTTTGAAAGAAAAAAACGTCCTCCTCTTTGAGGACTAAAAGATGC
1 GTGCCACCAACTTGTGTGAGCTTTAAAAGAAAAAAACATCCTCCTCTTTGAGGACTAAAAGATGC
* * * * * * * *
974332 CACTAGCTTGTGTGGGCTTTTAAAG-GA-AAGTGTCTTGA-TCTTTAAGGACTAAAAGGTGTCAC
66 CACCAACTTGTGTGGGCTTTAAAAGAGAGAAATGTCCT-ACTCTATAAGGACTAAAAGATGCCAC
** * *
974394 CAACTTGTGTG-GACTTTA-AAAGGAAAATGCATCCTGCTTTTTAAGGGCTAGAAAGGTGCCACC
130 CAACTTGTGTGAG-CTTTATAAAAAAAAAGGCATCCTGCTTTTTAAGGACTA-AAAGGTGCCACC
* * *
974457 AGCTTGTGTGGGCTTTAAAAGAAAAAAAACGTGTCCTGCTCTTTGAAGATTAAAAGGTGCCACCA
193 AGCTGGTGTGGGCTTTAAAAGAAAAAAAACATGTCCTGCTCTTTGAAGACTAAAAGGTGCCACCA
974522 ACTTGTGTAGGCTTA
258 ACTTGTGTAGGCTTA
974537 AAAAAGAAAA
Statistics
Matches: 236, Mismatches: 28, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
268 4 0.02
269 54 0.23
270 95 0.40
271 3 0.01
276 62 0.26
277 18 0.08
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (273 bp):
GTGCCACCAACTTGTGTGAGCTTTAAAAGAAAAAAACATCCTCCTCTTTGAGGACTAAAAGATGC
CACCAACTTGTGTGGGCTTTAAAAGAGAGAAATGTCCTACTCTATAAGGACTAAAAGATGCCACC
AACTTGTGTGAGCTTTATAAAAAAAAAGGCATCCTGCTTTTTAAGGACTAAAAGGTGCCACCAGC
TGGTGTGGGCTTTAAAAGAAAAAAAACATGTCCTGCTCTTTGAAGACTAAAAGGTGCCACCAACT
TGTGTAGGCTTAG
Found at i:974524 original size:126 final size:122
Alignment explanation
Indices: 974266--974700 Score: 430
Period size: 126 Copynumber: 3.5 Consensus size: 122
974256 GTGTGGGCTT
* * * * * *
974266 AGGTGCCACCAACTTGTGTGGCTTTGAAAGAAAAAAACGTCCTCCTCTTTGAGGACTAAAAGATG
1 AGGTGCCACCAACTTGTGTGGCTTTAAAAGGAAAAAACATCCTGCTCTTT-AGGGCTAAAAGGTG
* * * * *
974331 CCACTAGCTTGTGTGGGCTTTTAAAG----GAAAGTGTCTTGATCTTT-AAGGACTAAA
65 CCACCAGCTTGTGTGGGCTTTAAAAGAAAAAAAAGTGTCCTGCTCTTTGAA-GACTAAA
* ** *
974385 AGGTGTCACCAACTTGTGTGGACTTTAAAAGGAAAATGCATCCTGCTTTTTAAGGGCTAGAAAGG
1 AGGTGCCACCAACTTGTGTGG-CTTTAAAAGGAAAAAACATCCTGCTCTTT-AGGGCTA-AAAGG
*
974450 TGCCACCAGCTTGTGTGGGCTTTAAAAGAAAAAAAACGTGTCCTGCTCTTTGAAGATTAAA
63 TGCCACCAGCTTGTGTGGGCTTTAAAAGAAAAAAAA-GTGTCCTGCTCTTTGAAGACTAAA
* * * *
974511 AGGTGCCACCAACTTGTGTAGGCTTAAAAAAGAAAAAACATCTTGCTCTTTGGGGACTAAAAGGT
1 AGGTGCCACCAACTTGTGT-GGCTTTAAAAGGAAAAAACATCCTGCTCTTTAGGG-CTAAAAGGT
* ** * *
974576 GCCATCAGCTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAGGACTAAG
64 GCCACCAGCTTGTGTGGGCTTTAAAAG-AAAA-AAAAGTGTCCTGCTCTTTGAAGACTAAA
* * * ** * * *
974637 AGTTGCCACCAACTTATGTTAGCTTTAAAAGGAAAAGGCATCATACTCTTTGAGGACTAAAAGG
1 AGGTGCCACCAACTTGTG-TGGCTTTAAAAGGAAAAAACATCCTGCTCTTT-AGGGCTAAAAGG
974701 ATAAAAGGTT
Statistics
Matches: 260, Mismatches: 42, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
119 20 0.08
120 28 0.11
121 30 0.12
125 38 0.15
126 133 0.51
127 11 0.04
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (122 bp):
AGGTGCCACCAACTTGTGTGGCTTTAAAAGGAAAAAACATCCTGCTCTTTAGGGCTAAAAGGTGC
CACCAGCTTGTGTGGGCTTTAAAAGAAAAAAAAGTGTCCTGCTCTTTGAAGACTAAA
Found at i:974644 original size:65 final size:65
Alignment explanation
Indices: 974266--974700 Score: 344
Period size: 61 Copynumber: 7.0 Consensus size: 65
974256 GTGTGGGCTT
* * *
974266 AGGTGCCACCAACTTGTGT-GGCTTTGAAAG--AAA-AAAA-CGTCCTCCTCTTTGAGGACTAAA
1 AGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAGGACTAAA
* * * * ** * * *
974326 AGATGCCACTAGCTTGTGTGGGCTTTTAAAG-----G-AAAGTGTCTTGATCTTTAAGGACTAAA
1 AGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAGGACTAAA
* * * * *
974385 AGGTGTCACCAACTTGTGTGGACTTTAAAAG-----GAAAATGCATCCTGCTTTTTAAGGGCTAG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAA-GCATCCTGCTCTTTGAGGACTA-
974445 AA
64 AA
* * ** * *
974447 AGGTGCCACCAGCTTGTGTGGGCTTTAAAAGAAAAA-AAACGTGTCCTGCTCTTTGAAGATTAAA
1 AGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAGGACTAAA
* * * *
974511 AGGTGCCACCAACTTGTGTAGGC-TTAAAA-AAGAA-AAAA-CATCTTGCTCTTTGGGGACTAAA
1 AGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAGGACTAAA
* * *
974572 AGGTGCCATCAGCTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAGGACTAAG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAGGACTAAA
* * ** * * *
974637 AGTTGCCACCAACTTATGTTAGCTTTAAAAGGAAAAG----GCATCATACTCTTTGAGGACTAAA
1 AGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAGGACTAAA
974698 AGG
1 AGG
974701 ATAAAAGGTT
Statistics
Matches: 300, Mismatches: 60, Indels: 29
0.77 0.15 0.07
Matches are distributed among these distances:
58 3 0.01
59 44 0.15
60 19 0.06
61 86 0.29
62 43 0.14
63 10 0.03
64 27 0.09
65 65 0.22
66 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (65 bp):
AGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAGGACTAAA
Found at i:977109 original size:21 final size:20
Alignment explanation
Indices: 977076--977114 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
977066 CATCGTATCT
*
977076 AAGCAGTGCTCTATTGCATCG
1 AAGCAGTGATCTA-TGCATCG
*
977097 AAGCATTGATCTATGCAT
1 AAGCAGTGATCTATGCAT
977115 TGAGTAAGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (20 bp):
AAGCAGTGATCTATGCATCG
Found at i:984802 original size:13 final size:13
Alignment explanation
Indices: 984784--984808 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
984774 ACAAAGATCA
984784 TGTATCGATACAT
1 TGTATCGATACAT
984797 TGTATCGATACA
1 TGTATCGATACA
984809 AAGCAATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:991597 original size:13 final size:13
Alignment explanation
Indices: 991579--991604 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
991569 ACAATTTTTG
991579 TGTATCGATACAT
1 TGTATCGATACAT
991592 TGTATCGATACAT
1 TGTATCGATACAT
991605 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:991601 original size:32 final size:32
Alignment explanation
Indices: 991560--991622 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
991550 TACAAGCCAA
**
991560 TGTATCGATACAATTTTTG-TGTATCGATACAT
1 TGTATCGATAC-ATACTTGCTGTATCGATACAT
991592 TGTATCGATACATACTTGCTGTATCGATACA
1 TGTATCGATACATACTTGCTGTATCGATACA
991623 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 5 0.18
32 23 0.82
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (32 bp):
TGTATCGATACATACTTGCTGTATCGATACAT
Found at i:991669 original size:21 final size:20
Alignment explanation
Indices: 991643--991719 Score: 91
Period size: 21 Copynumber: 3.8 Consensus size: 20
991633 CTGCCAAGAA
991643 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACAT-TTTTTT
*****
991664 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTTTTTT
991684 ATGTATCGATACATTTTTTT
1 ATGTATCGATACATTTTTTT
991704 CATGTATCGATACATT
1 -ATGTATCGATACATT
991720 GCAACATGTA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTTT
Found at i:991689 original size:20 final size:20
Alignment explanation
Indices: 991664--991736 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
991654 CATCTTTTTT
991664 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
991684 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACA-TTGCAAC
991705 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
991725 ATGTATCGATAC
1 ATGTATCGATAC
991737 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:991703 original size:41 final size:41
Alignment explanation
Indices: 991643--991736 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
991633 CTGCCAAGAA
*
991643 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
*
991684 ATGTATCGATACATTTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
991725 ATGTATCGATAC
1 ATGTATCGATAC
991737 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:992342 original size:48 final size:48
Alignment explanation
Indices: 992287--992478 Score: 384
Period size: 48 Copynumber: 4.0 Consensus size: 48
992277 AAAATTTACG
992287 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
1 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
992335 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
1 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
992383 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
1 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
992431 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
1 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
992479 TTATCTCCCC
Statistics
Matches: 144, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 144 1.00
ACGTcount: A:0.25, C:0.29, G:0.08, T:0.38
Consensus pattern (48 bp):
AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
Found at i:994336 original size:13 final size:13
Alignment explanation
Indices: 994318--994356 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
994308 ATAATCACCC
*
994318 TGTATCGATACAG
1 TGTATCGATACAA
994331 TGTATCGATACAA
1 TGTATCGATACAA
994344 TGTATCGATACAA
1 TGTATCGATACAA
994357 GGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:996455 original size:15 final size:15
Alignment explanation
Indices: 996435--996465 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
996425 ATTTCGTTTG
*
996435 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
996450 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
996465 G
1 G
996466 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1000544 original size:13 final size:13
Alignment explanation
Indices: 1000526--1000551 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1000516 ACAATTTTTG
1000526 TGTATCGATACAT
1 TGTATCGATACAT
1000539 TGTATCGATACAT
1 TGTATCGATACAT
1000552 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1000548 original size:32 final size:32
Alignment explanation
Indices: 1000507--1000569 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
1000497 TACAAGCCAA
**
1000507 TGTATCGATACAATTTTTG-TGTATCGATACAT
1 TGTATCGATAC-ATACTTGCTGTATCGATACAT
1000539 TGTATCGATACATACTTGCTGTATCGATACA
1 TGTATCGATACATACTTGCTGTATCGATACA
1000570 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 5 0.18
32 23 0.82
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (32 bp):
TGTATCGATACATACTTGCTGTATCGATACAT
Found at i:1000616 original size:21 final size:20
Alignment explanation
Indices: 1000590--1000666 Score: 91
Period size: 21 Copynumber: 3.8 Consensus size: 20
1000580 CTGCCAAGAA
1000590 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACAT-TTTTTT
*****
1000611 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTTTTTT
1000631 ATGTATCGATACATTTTTTT
1 ATGTATCGATACATTTTTTT
1000651 CATGTATCGATACATT
1 -ATGTATCGATACATT
1000667 GCAACATGTA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTTT
Found at i:1000636 original size:20 final size:20
Alignment explanation
Indices: 1000611--1000683 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1000601 CATCTTTTTT
1000611 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
1000631 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACA-TTGCAAC
1000652 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
1000672 ATGTATCGATAC
1 ATGTATCGATAC
1000684 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:1000650 original size:41 final size:41
Alignment explanation
Indices: 1000590--1000683 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
1000580 CTGCCAAGAA
*
1000590 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
*
1000631 ATGTATCGATACATTTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1000672 ATGTATCGATAC
1 ATGTATCGATAC
1000684 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:1005463 original size:78 final size:78
Alignment explanation
Indices: 1005179--1005778 Score: 454
Period size: 78 Copynumber: 7.7 Consensus size: 78
1005169 TGGTGAAAAT
* * * * * * * *
1005179 CGGGGTTGGAGTATCCTCGA-GATAAAAAATT-AAGATTTTGGAAGTGAAAACAGGGTCGGAGTA
1 CGGGGTTGGAGTATCCTCGATGGTGAAAAATTCGATATTTTAGAAAT-AAAA-TGGGTTGGAGTA
* *
1005242 TCCCCTCGAAAATGA
64 TCCCCTCAAAAATAA
* * * * * *
1005257 -TGGGTTGGAGTATCC-CTAATGATGAATAA-TCGATATTTCAAAAATAAAAATGGGGTTGGAGT
1 CGGGGTTGGAGTATCCTC-GATGGTGAAAAATTCGATATTTTAGAAAT-AAAAT-GGGTTGGAGT
* *
1005319 ATCTCCTAAAAAATAA
63 ATCCCCTCAAAAATAA
* *
1005335 CAGGGTTTGAGTAT-CTCCGATGGTGAAAAA-TCGATATTTTAGTAAA-AAAATGGGTTGGAGTA
1 CGGGGTTGGAGTATCCT-CGATGGTGAAAAATTCGATATTTTAG-AAATAAAATGGGTTGGAGTA
*
1005397 TCCCATCAAAAATAA
64 TCCCCTCAAAAATAA
*
1005412 CGGGGTTGGAGTATCCTCGTTGGTGAAAAATTCGATATTTTAGAAATAAAATGAGGTTGGAGTAT
1 CGGGGTTGGAGTATCCTCGATGGTGAAAAATTCGATATTTTAGAAATAAAATG-GGTTGGAGTAT
*
1005477 CCCCTCGAAAATAA
65 CCCCTCAAAAATAA
* * * * * **
1005491 TGGGGTTGGAGTATCC-CAATGGTTAAAAATTCAATATTTTGGAAATAAAACAAGGTTGGAGTAT
1 CGGGGTTGGAGTATCCTCGATGGTGAAAAATTCGATATTTTAGAAATAAAA-TGGGTTGGAGTAT
* *
1005555 CCCCTTAGAAATAA
65 CCCCTCAAAAATAA
* * * * * *
1005569 CAGGGTTGAAGTAT-CTCCGATAGT-AAAAA-TCGATATTTTGGATATAAAATCGAGGTTGGAGC
1 CGGGGTTGGAGTATCCT-CGATGGTGAAAAATTCGATATTTTAGAAATAAAAT-G-GGTTGGAGT
*** * *
1005631 ATTTTCTTAGAAGA-AA
63 ATCCCCTCA-AAAATAA
* * * * * *
1005647 TGGGGTTAGAGTATCCTCGTTGGTGAAAAATTAGATATTTTAGAAATAAAAATGGGGTTAGAGAA
1 CGGGGTTGGAGTATCCTCGATGGTGAAAAATTCGATATTTTAGAAAT-AAAAT-GGGTTGGAGTA
*
1005712 TCCCCTAAAAAATAA
64 TCCCCTCAAAAATAA
* * * * * *
1005727 TGGGGTTAGAGTATCCTCGACGTTGAAAAAATCAATATTTT-GAAAATAAAAT
1 CGGGGTTGGAGTATCCTCGATGGTGAAAAATTCGATATTTTAG-AAATAAAAT
1005779 AAAATAATTA
Statistics
Matches: 417, Mismatches: 81, Indels: 47
0.77 0.15 0.09
Matches are distributed among these distances:
76 1 0.00
77 85 0.20
78 164 0.39
79 91 0.22
80 70 0.17
81 6 0.01
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCTCGATGGTGAAAAATTCGATATTTTAGAAATAAAATGGGTTGGAGTATC
CCCTCAAAAATAA
Found at i:1010504 original size:43 final size:43
Alignment explanation
Indices: 1010457--1010538 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
1010447 CGATGAGGAA
*
1010457 ATGAAATACAAAGAAGGTCTCCTAGGTCTAAGCCGATGGGCAG
1 ATGAAAGACAAAGAAGGTCTCCTAGGTCTAAGCCGATGGGCAG
* * * * *
1010500 ATGAAAGATAATGAAGTTTTCTTAGGTCTAAGCCGATGG
1 ATGAAAGACAAAGAAGGTCTCCTAGGTCTAAGCCGATGG
1010539 ACAAATGATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.34, C:0.15, G:0.27, T:0.24
Consensus pattern (43 bp):
ATGAAAGACAAAGAAGGTCTCCTAGGTCTAAGCCGATGGGCAG
Found at i:1010574 original size:43 final size:42
Alignment explanation
Indices: 1010527--1010664 Score: 134
Period size: 43 Copynumber: 3.2 Consensus size: 42
1010517 TTTCTTAGGT
* *
1010527 CTAAGCCGATGGACAAATGATTGATGAAGGAAGTCTCCCAAGA
1 CTAAGCCGATGGAC-AACGATTGATGAAGGAAGTCTCTCAAGA
* * * *
1010570 CTAAGCTGATGAGTAC-ACGATTGATGAAGAAAGTCTCTCAGGC
1 CTAAGCCGATG-G-ACAACGATTGATGAAGGAAGTCTCTCAAGA
* * * * *
1010613 CTGAGCTGATGGGCAGACGATTGATAAAGGAAGTCTCTCGAGA
1 CTAAGCCGATGGACA-ACGATTGATGAAGGAAGTCTCTCAAGA
1010656 CTAAGCCGA
1 CTAAGCCGA
1010665 CAGGTAGATA
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 71 0.93
44 1 0.01
45 2 0.03
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.20
Consensus pattern (42 bp):
CTAAGCCGATGGACAACGATTGATGAAGGAAGTCTCTCAAGA
Found at i:1010819 original size:258 final size:256
Alignment explanation
Indices: 1010546--1011186 Score: 655
Period size: 258 Copynumber: 2.5 Consensus size: 256
1010536 TGGACAAATG
* * * * *
1010546 ATTGATGAAGGAAGTCTCCCAAGACTAAGCTGATGAGTACACGATTGATGAAGAAAGTCTCTCAG
1 ATTGATGAAGGAAGTCTCCTAAGACTAAGCTGATGGGCAAACGATTGATGAAGGAAGTCTCTCAG
* * * *
1010611 GCCTGAGCTGATGGGCAGACGATTGATAAAGGAAGTCTCTCGAGACTAAGCCGACAGGTAGATAA
66 GACTGAGCTGATGAGCAGACGATTGATAAAGGAAGTCTCTCGAGACTAAGTCGACAGGTAGACAA
* * *
1010676 TTAAT-AAAGGAAGGTCTCTCGGGACTGAACCAACAGGTAGACGAATGATGAAAAAGTCTCCCAA
131 TTAATGAAA-GAAGGTCTCTCAGGACTGAACCAACAAGTAGACGAAAGATGAAAAAGTCTCCCAA
* * * * *
1010740 GCTTGAG-C-CCATGG-ACAAATAATTGATTAAAGAAGTCTCCCAGGCTTGAGCCGACGAGTAGA
195 GCCTAAGTCGACA-GGTACAAA-AA--GA-TAAAGAAGTCTCCCAAGCTTGAGCCGACGAGCAGA
1010802 CA
255 CA
* * * * *
1010804 ATTGATGAGGGAAGTCTCCTAGGACTTAG-TCGATGGGCAAATGATTGATAAAGGAAGTCTCTCA
1 ATTGATGAAGGAAGTCTCCTAAGACTAAGCT-GATGGGCAAACGATTGATGAAGGAAGTCTCTCA
* * * * * * *
1010868 GGACTAAGCTGATGAGCAAACGATTGATGAAA-AAAGTCTCTCGGGACTGAGTCGATAGGTTGAC
65 GGACTGAGCTGATGAGCAGACGATTGAT-AAAGGAAGTCTCTCGAGACTAAGTCGACAGGTAGAC
* * * ** * *
1010932 GATTGATGAAAGAAGGTCTCTCAGGACTGAGCTGACAAGTAGACGAAAGATGAAAAAGTTTCCCG
129 AATTAATGAAAGAAGGTCTCTCAGGACTGAACCAACAAGTAGACGAAAGATGAAAAAGTCTCCCA
* * * * * *
1010997 GGCCTAAGTCGACAGGTAGAGAAAGATGAAGAAGTCTCCCAAGCTTGAGCTGACGAGCAGACG
194 AGCCTAAGTCGACAGGTACAAAAAGATAAAGAAGTCTCCCAAGCTTGAGCCGACGAGCAGACA
* * * * * * *
1011060 ATTGATGAAGGAAGTCTCCTAAGCCTGATCCGACGGGCAGACGATTGATGAAGGAAGTCTCTCAA
1 ATTGATGAAGGAAGTCTCCTAAGACTAAGCTGATGGGCAAACGATTGATGAAGGAAGTCTCTCAG
* * * * * * * *
1011125 GACTGAGTTGATGAGTAGATGATTGATGAAGGAAGTTTCTTGAGACTAGGTCGACAAGTAGA
66 GACTGAGCTGATGAGCAGACGATTGATAAAGGAAGTCTCTCGAGACTAAGTCGACAGGTAGA
1011187 AGAATAATGA
Statistics
Matches: 307, Mismatches: 68, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
255 2 0.01
256 129 0.42
257 3 0.01
258 157 0.51
259 11 0.04
260 5 0.02
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (256 bp):
ATTGATGAAGGAAGTCTCCTAAGACTAAGCTGATGGGCAAACGATTGATGAAGGAAGTCTCTCAG
GACTGAGCTGATGAGCAGACGATTGATAAAGGAAGTCTCTCGAGACTAAGTCGACAGGTAGACAA
TTAATGAAAGAAGGTCTCTCAGGACTGAACCAACAAGTAGACGAAAGATGAAAAAGTCTCCCAAG
CCTAAGTCGACAGGTACAAAAAGATAAAGAAGTCTCCCAAGCTTGAGCCGACGAGCAGACA
Found at i:1011067 original size:83 final size:86
Alignment explanation
Indices: 1010860--1011078 Score: 203
Period size: 83 Copynumber: 2.6 Consensus size: 86
1010850 GATAAAGGAA
* * * * * * * *
1010860 GTCTCTCAGGACTAAGCTGATGAGCAAACGATTGATGAAAAAAGTCTCTCGGGACTGAGTCGATA
1 GTCTCCCAAGACTGAGCTGACGAGCAGACGATTGATG-AAAAAGTCTCCCGGGACTAAGTCGACA
* **
1010925 GGTTGACGATTGATGAAAGAAG
65 GGTAGACGAAAGATGAAAGAAG
* * * * ** * *
1010947 GTCTCTCAGGACTGAGCTGACAAGTAGACGAAAGATGAAAAAGTTTCCCGGGCCTAAGTCGACAG
1 GTCTCCCAAGACTGAGCTGACGAGCAGACGATTGATGAAAAAGTCTCCCGGGACTAAGTCGACAG
1011012 GTAGA-GAAAGATG-AAGAA-
66 GTAGACGAAAGATGAAAGAAG
*
1011030 GTCTCCCAAG-CTTGAGCTGACGAGCAGACGATTGATGAAGGAAGTCTCC
1 GTCTCCCAAGAC-TGAGCTGACGAGCAGACGATTGATGAA-AAAGTCTCC
1011079 TAAGCCTGAT
Statistics
Matches: 107, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
82 1 0.01
83 31 0.29
84 12 0.11
85 6 0.06
86 27 0.25
87 30 0.28
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (86 bp):
GTCTCCCAAGACTGAGCTGACGAGCAGACGATTGATGAAAAAGTCTCCCGGGACTAAGTCGACAG
GTAGACGAAAGATGAAAGAAG
Found at i:1011100 original size:43 final size:43
Alignment explanation
Indices: 1010545--1011160 Score: 197
Period size: 43 Copynumber: 14.4 Consensus size: 43
1010535 ATGGACAAAT
* * * * * *
1010545 GATTGATGAAGGAAGTCTCCCAAGACTAAGCTGATGAGTACAC
1 GATTGATGAAGGAAGTCTCCCAAGCCTGAGCCGACGAGCAGAC
* * * * * *
1010588 GATTGATGAAGAAAGTCTCTCAGGCCTGAGCTGATGGGCAGAC
1 GATTGATGAAGGAAGTCTCCCAAGCCTGAGCCGACGAGCAGAC
* * * * * * *
1010631 GATTGATAAAGGAAGTCTCTCGAGACTAAGCCGAC-AGGTAGAT
1 GATTGATGAAGGAAGTCTCCCAAGCCTGAGCCGACGA-GCAGAC
* * * * ** * * * *
1010674 AATTAATAAAGGAAGGTCTCTCGGGACTGAACCAAC-AGGTAGAC
1 GATTGATGAAGGAA-GTCTCCCAAGCCTGAGCCGACGA-GCAGAC
* * * * * * *
1010718 GAATGATGAA-AAAGTCTCCCAAGCTTGAGCCCATG-GACAAAT
1 GATTGATGAAGGAAGTCTCCCAAGCCTGAGCCGACGAG-CAGAC
* * * * * *
1010760 AATTGATTAAAGAAGTCTCCCAGGCTTGAGCCGACGAGTAGAC
1 GATTGATGAAGGAAGTCTCCCAAGCCTGAGCCGACGAGCAGAC
* * * * * * * * * * *
1010803 AATTGATGAGGGAAGTCTCCTAGGACTTAGTCGATGGGCAAAT
1 GATTGATGAAGGAAGTCTCCCAAGCCTGAGCCGACGAGCAGAC
* * * * * * * *
1010846 GATTGATAAAGGAAGTCTCTCAGGACTAAGCTGATGAGCAAAC
1 GATTGATGAAGGAAGTCTCCCAAGCCTGAGCCGACGAGCAGAC
** * ** * * * **
1010889 GATTGATGAAAAAAGTCTCTCGGGACTGAGTCGA-TAGGTTGAC
1 GATTGATGAAGGAAGTCTCCCAAGCCTGAGCCGACGA-GCAGAC
* * * * * * *
1010932 GATTGATGAAAGAAGGTCTCTCAGGACTGAGCTGACAAGTAGAC
1 GATTGATGAAGGAA-GTCTCCCAAGCCTGAGCCGACGAGCAGAC
** * * ** * * *
1010976 GAAAGATGAA-AAAGTTTCCCGGGCCTAAGTCGAC-AGGTAGA-
1 GATTGATGAAGGAAGTCTCCCAAGCCTGAGCCGACGA-GCAGAC
** * *
1011017 GAAAGATGAA-GAAGTCTCCCAAGCTTGAGCTGACGAGCAGAC
1 GATTGATGAAGGAAGTCTCCCAAGCCTGAGCCGACGAGCAGAC
* * *
1011059 GATTGATGAAGGAAGTCTCCTAAGCCTGATCCGACGGGCAGAC
1 GATTGATGAAGGAAGTCTCCCAAGCCTGAGCCGACGAGCAGAC
* * ** * * *
1011102 GATTGATGAAGGAAGTCTCTCAAGACTGAGTTGATGAGTAGAT
1 GATTGATGAAGGAAGTCTCCCAAGCCTGAGCCGACGAGCAGAC
1011145 GATTGATGAAGGAAGT
1 GATTGATGAAGGAAGT
1011161 TTCTTGAGAC
Statistics
Matches: 432, Mismatches: 128, Indels: 26
0.74 0.22 0.04
Matches are distributed among these distances:
41 32 0.07
42 51 0.12
43 287 0.66
44 61 0.14
45 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (43 bp):
GATTGATGAAGGAAGTCTCCCAAGCCTGAGCCGACGAGCAGAC
Found at i:1011163 original size:170 final size:170
Alignment explanation
Indices: 1010929--1011334 Score: 437
Period size: 170 Copynumber: 2.4 Consensus size: 170
1010919 TCGATAGGTT
* ** *
1010929 GACGATTGATGAAAGAAGGTCTCTCAGGACTGAGCTGACAAGTAGACGAAAGATGAA-AAAGTTT
1 GACGATTGATGAAAGAA-GTCTCTCAGGACTGAGCTGACAAGTAGATGATTGATGAAGGAAGTTT
* * * * *
1010993 CCCGGGCCTAAGTCGACAGGTAG-AGAA-AGATGAAGAAGTCTCCCAAGCTTGAGCTGAC-GAGC
65 CCCGAGACTAAGTCGACAAGTAGAAGAATA-ATGAAGAAGTCTCCCAAGCTTAAGCCGACAG-GC
* *
1011055 AGACGATTGATGAAGGAAGTCTCCTAAGCCTG-ATCCGACGGGCA
128 AAACGACTGATGAAGGAAGTCTCCTAAGCCTGAAT--GACGGGCA
* * * **
1011099 GACGATTGATGAAGGAAGTCTCTCAAGACTGAGTTGATGAGTAGATGATTGATGAAGGAAGTTTC
1 GACGATTGATGAAAGAAGTCTCTCAGGACTGAGCTGACAAGTAGATGATTGATGAAGGAAGTTTC
** * * **
1011164 TTGAGACTAGGTCGACAAGTAGAAGAATAATGAAGAAGTCTCGCGGGCTTAAGCCGACAGGCAAA
66 CCGAGACTAAGTCGACAAGTAGAAGAATAATGAAGAAGTCTCCCAAGCTTAAGCCGACAGGCAAA
* * ** *
1011229 CGACTGATGGAGGAAGTCTTCTGGGCCTGAATGACGGGTA
131 CGACTGATGAAGGAAGTCTCCTAAGCCTGAATGACGGGCA
** * *
1011269 GACGATTGATGAAAGAAGTCTCCTC-GGACTGAGCCAACAAGCAGATGATTAATGAAGGAAGTTT
1 GACGATTGATGAAAGAAGTCT-CTCAGGACTGAGCTGACAAGTAGATGATTGATGAAGGAAGTTT
1011333 CC
65 CC
1011335 TCGAAATTGA
Statistics
Matches: 193, Mismatches: 37, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
169 32 0.17
170 98 0.51
171 59 0.31
172 4 0.02
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (170 bp):
GACGATTGATGAAAGAAGTCTCTCAGGACTGAGCTGACAAGTAGATGATTGATGAAGGAAGTTTC
CCGAGACTAAGTCGACAAGTAGAAGAATAATGAAGAAGTCTCCCAAGCTTAAGCCGACAGGCAAA
CGACTGATGAAGGAAGTCTCCTAAGCCTGAATGACGGGCA
Found at i:1011185 original size:43 final size:43
Alignment explanation
Indices: 1010844--1011205 Score: 134
Period size: 43 Copynumber: 8.5 Consensus size: 43
1010834 CGATGGGCAA
* * * ** * *
1010844 ATGATTGATAAAGGAAGTCTCTCAGGACTAAG-CTGATGAGCAA
1 ATGATTGATGAAGGAAGTCTCTCAAGACTGAGTC-GACAAGTAG
* ** ** * * *
1010887 ACGATTGATGAAAAAAGTCTCTCGGGACTGAGTCGATAGGTTG
1 ATGATTGATGAAGGAAGTCTCTCAAGACTGAGTCGACAAGTAG
* * *
1010930 ACGATTGATGAAAGAAGGTCTCTCAGGACTGAG-CTGACAAGTAG
1 ATGATTGATGAAGGAA-GTCTCTCAAGACTGAGTC-GACAAGTAG
* ** * * * ** * * *
1010974 ACGAAAGATGAA-AAAGTTTCCCGGGCCTAAGTCGACAGGTAG
1 ATGATTGATGAAGGAAGTCTCTCAAGACTGAGTCGACAAGTAG
** * * *
1011016 A-GAAAGATGAA-GAAGTCTCCCAAG-CTTGAG-CTGACGAGCAG
1 ATGATTGATGAAGGAAGTCTCTCAAGAC-TGAGTC-GACAAGTAG
* * ** *
1011057 ACGATTGATGAAGGAAGTCTC-CTAAGCCTGA-TCCGACGGGCAG
1 ATGATTGATGAAGGAAGTCTCTC-AAGACTGAGT-CGACAAGTAG
* * **
1011100 ACGATTGATGAAGGAAGTCTCTCAAGACTGAGTTGATGAGTAG
1 ATGATTGATGAAGGAAGTCTCTCAAGACTGAGTCGACAAGTAG
* **
1011143 ATGATTGATGAAGGAAGTTTCTTGAGACT-AGGTCGACAAGTAG
1 ATGATTGATGAAGGAAGTCTCTCAAGACTGA-GTCGACAAGTAG
* * *
1011186 AAGAATAATGAA-GAAGTCTC
1 ATGATTGATGAAGGAAGTCTC
1011206 GCGGGCTTAA
Statistics
Matches: 252, Mismatches: 52, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
40 2 0.01
41 29 0.12
42 37 0.15
43 148 0.59
44 36 0.14
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.22
Consensus pattern (43 bp):
ATGATTGATGAAGGAAGTCTCTCAAGACTGAGTCGACAAGTAG
Found at i:1012089 original size:46 final size:46
Alignment explanation
Indices: 1011878--1012354 Score: 212
Period size: 47 Copynumber: 10.2 Consensus size: 46
1011868 TTAAGGGGGG
* * * *
1011878 AAGAGTTTGACCAAGTCCTAACGCCAATA-AAGTTAGACAAAGGTGAA
1 AAGAGTTTGACCAAGTCCTAATGCCAATACAA-TCAAAC-GAGGTGAA
* * * * *
1011925 AAGAGTTTGGCCAGGTCCTAAAGCCAATACAATCAAATGAGGGTGAGG
1 AAGAGTTTGACCAAGTCCTAATGCCAATACAATCAAACGA-GGTGA-A
* * * * * *
1011973 AA-AGTTTGACC-AGTTCTTAATACCAAAATAGTCAAACGA-TTGAGA
1 AAGAGTTTGACCAAG-TCCTAATGCCAATACAATCAAACGAGGTGA-A
* * *
1012018 GAAAAGTATGACCAGGTCCTAATGCCAATACAATCAAACGAGGTGAA
1 -AAGAGTTTGACCAAGTCCTAATGCCAATACAATCAAACGAGGTGAA
* * * * * * *
1012065 AAGAGCTTGGCCAAGTTCTAATGCCAATATAGTTAAACAAGGTGAAA
1 AAGAGTTTGACCAAGTCCTAATGCCAATACAATCAAACGAGGTG-AA
* ** ** * * *
1012112 AAAATGTTTGACCATTTTTTAATGTCAATATAGTCAAA-GAATGGT-AA
1 AAGA-GTTTGACCAAGTCCTAATGCCAATACAATCAAACG-A-GGTGAA
* * *** * * * ** *
1012159 GAAAAGTTTAACTGGGTCCAAACGCTAATACAATCAAATAATAGTGAA
1 -AAGAGTTTGACCAAGTCCTAATGCCAATACAATCAAACGA-GGTGAA
* * * *
1012207 GAA-AGTTTGACCAAATCCTAACTGCCAATATAGTCAAACAAGGTGAA
1 -AAGAGTTTGACCAAGTCCTAA-TGCCAATACAATCAAACGAGGTGAA
* * ** * * * *
1012254 AAGAGTTTAACCAGGTCCTAACACCAATATAGTCAAGCAAGGTGAA
1 AAGAGTTTGACCAAGTCCTAATGCCAATACAATCAAACGAGGTGAA
* * * *
1012300 AAAAGTTTGACCAGGTCCTAATGCTAATACAATCAAACAATGGTGAA
1 AAGAGTTTGACCAAGTCCTAATGCCAATACAATCAAACGA-GGTGAA
*
1012347 AAAAGTTT
1 AAGAGTTT
1012355 AACTAGATGC
Statistics
Matches: 325, Mismatches: 87, Indels: 36
0.73 0.19 0.08
Matches are distributed among these distances:
45 4 0.01
46 94 0.29
47 166 0.51
48 58 0.18
49 3 0.01
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (46 bp):
AAGAGTTTGACCAAGTCCTAATGCCAATACAATCAAACGAGGTGAA
Found at i:1012121 original size:141 final size:140
Alignment explanation
Indices: 1011973--1012349 Score: 395
Period size: 141 Copynumber: 2.7 Consensus size: 140
1011963 GAGGGTGAGG
* * *
1011973 AAAGTTTGACCAGTTCTTAATACCAAAATAGTCAAACGATTGAGAGAAAAGTATGACCAGGTCCT
1 AAAGTTTGACCAGTTCTTAATACCAATATAGTCAAACGAATGAGAGAAAAGTTTGACCAGGTCCT
* * * * * *
1012038 AATGCCAATACAATCAAACGA-GGTGAAAAGAGCTTGGCCAAGTTCTAA-TGCCAATATAGTTAA
66 AATGCTAATACAATCAAACAATGGTGAAAA-AGCTTGACCAAATCCTAACTGCCAATATAGTCAA
1012101 ACAAGGTGAAAA
130 ACAAGGTG-AAA
* * ** * **
1012113 AAATGTTTGACCATTTTTTAATGTCAATATAGTCAAA-GAATG-GTAAGAAAAGTTTAACTGGGT
1 AAA-GTTTGACCAGTTCTTAATACCAATATAGTCAAACGAATGAG--AGAAAAGTTTGACCAGGT
* * * * *
1012176 CCAAACGCTAATACAATCAAATAATAGTGAAGAAAGTTTGACCAAATCCTAACTGCCAATATAGT
63 CCTAATGCTAATACAATCAAACAATGGTGAA-AAAGCTTGACCAAATCCTAACTGCCAATATAGT
1012241 CAAACAAGGTGAAA
127 CAAACAAGGTGAAA
* * * * * * * * *
1012255 AGAGTTTAACCAGGTCCTAACACCAATATAGTCAAGC-AAGGTGAAAAAAGTTTGACCAGGTCCT
1 AAAGTTTGACCAGTTCTTAATACCAATATAGTCAAACGAATGAGAGAAAAGTTTGACCAGGTCCT
1012319 AATGCTAATACAATCAAACAATGGTGAAAAA
66 AATGCTAATACAATCAAACAATGGTGAAAAA
1012350 AGTTTAACTA
Statistics
Matches: 189, Mismatches: 40, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
139 4 0.02
140 48 0.25
141 88 0.47
142 25 0.13
143 24 0.13
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.24
Consensus pattern (140 bp):
AAAGTTTGACCAGTTCTTAATACCAATATAGTCAAACGAATGAGAGAAAAGTTTGACCAGGTCCT
AATGCTAATACAATCAAACAATGGTGAAAAAGCTTGACCAAATCCTAACTGCCAATATAGTCAAA
CAAGGTGAAA
Done.