Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1181
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 580274
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.15
Warning! 311624 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:958 original size:158 final size:159
Alignment explanation
Indices: 39--1746 Score: 637
Period size: 158 Copynumber: 10.8 Consensus size: 159
29 AATGAATGAC
* * * * * * *
39 GATCA-TTACTAGAATCCATGTTTGCCTCATTTAAGACATGAACTTAGACTTTAC-AAAATTGGT
1 GATCAGTTACGAGAATCGATGCTTGTCTTATTTAAGAGACGAACTTAGACTTTACAAAAATTGGT
* * * * * *
102 GGGAAAAATGCTTTTCTTTCGAAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTAAG-
66 GGGAAAATTGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAATATGT
* *
166 TTTATGGTGCATAATCCTGAAAAGAATGG-
131 TTTA-GGTTCCTAATCCTGAAAAGAATGGA
* * * *** * * * ** * *
195 GAT-TGGTATGACTTTTC-ATGTTTATCTTATTTAAAAGAAAAACTTTGA-TTCCATCAAAAA-T
1 GATCAGTTACGA-GAATCGATGCTTGTCTTATTTAAGAGACGAACTTAGACTT-TA-CAAAAATT
* * * * * * * *
256 GGTGAAAGGAAAA--GCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTATTAATG-GG
63 GGTG---GGAAAATTGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGA-GAAG
* * * * * *
318 AATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGAA
124 AATATGTTTTAGGTTCCTAATCCTGAAAAGAATGGA
* * * *
354 GA-CTA-TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TGTTATGAAAAATA
1 GATC-AGTTACGAGAATCGATGCTTGTCTTATTTAAGAGACGAACTTAGACT-TTA-CAAAAAT-
* ** ** ** * ** * * * *
416 AGG-GCAAAGAAAAGATTTTCATGC-AAAAGAAAATCATCAATCTCATTTATCCTAGTGAGGAGA
62 TGGTGGGAA-AATTGCCTTTCTTGCGAAACCAAAA-CATCAATATCATGTATCCTAATGAGAAGA
* *
479 A-AGTGCTTGTAGCG--CCTAATCAC-GAAATGAAT-GA
125 ATA-TG-TTTTAG-GTTCCTAATC-CTGAAAAGAATGGA
* * * * * * *
513 CTATCA-TTACTAGAATCCATGTTTGTCTCATTTGAG-GCAAGAACTTAGACTTTACAAAAATTG
1 -GATCAGTTACGAGAATCGATGCTTGTCTTATTTAAGAG-ACGAACTTAGACTTTACAAAAATTG
* * * * * *
576 GTGGGAAAA-TGGCTTTCTTGC-AAAGCCAAAGCATTAATATCGTGTATCCTATTGAGAA-AAGC
64 GTGGGAAAATTGCCTTTCTTGCGAAA-CCAAAACATCAATATCATGTATCCTAATGAGAAGAA-T
* *
638 ATG-TTTATGGTGCCTAAACCTGAAAAGAATAGG-
127 ATGTTTTA-GGTTCCTAATCCTGAAAAGAAT-GGA
* * * * * * ** * *
671 GATTAG-TATGGGTATTC-ATGTTTGTCTCATTTAAGAGATAAACTTTGA-TTCTATCAAAAA-A
1 GATCAGTTACGAG-AATCGATGCTTGTCTTATTTAAGAGACGAACTTAGACTT-TA-CAAAAATT
* * ** * * ** * *
732 GATGGAAAGAAAAGCATTGCCAAG-GACACCAAAGCATCAATATCATGTATCCTAA--AGAAGGA
63 GGTGGGAA-AATTGCCTT-TCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAA-G-
*
794 AATATGTTTTAGGTTCCCAATCCTGAAAAGAATGGA
124 AATATGTTTTAGGTTCCTAATCCTGAAAAGAATGGA
* * *
830 GA-CAGTTAAGAGAATCGATGCTTGTCCTATTTAA-AGGATGAACTTAGACTTTACAAAAATTGG
1 GATCAGTTACGAGAATCGATGCTTGTCTTATTTAAGA-GACGAACTTAGACTTTACAAAAATTGG
* * * *
893 TGGGAAAATTGCCTCTCTTGCGAAACCAAAACATCAATTTCGTGTATCCTAATGAGAAGACTATG
65 TGGGAAAATTGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAATATG
* * *
958 -TTTATGGTGCCTAATCCTGAAAGGAATGGG
130 TTTTA-GGTTCCTAATCCTGAAAAGAATGGA
* * * * ** * *
988 GATTAG-TATGACTATTC-ATATTTGTCTTATTTAAGAGACAAACTTCGA-TTTCATCAAAAGCA
1 GATCAGTTACGA-GAATCGATGCTTGTCTTATTTAAGAGACGAACTTAGACTTT-A-CAAAA--A
* ** * * ** * * *
1050 GTGGAAGGAAAA--GCTTTTCTTACGGCACCAAAGCATC---A--ATGTATCCTATTGATG-GGA
61 TTGGTGGGAAAATTGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGA-GAAGA
** * * * * *
1107 ATGGGTTTTTGGTACCCAATCTTGAAAAGGATGGA
125 ATATGTTTTAGGTTCCTAATCCTGAAAAGAATGGA
* * * * * ** * *
1142 GA-CTA-TTATGAGAATCGATTCCTGTCTTATTTAAGGGATGAACTTTTATTTTACGAAAAATAG
1 GATC-AGTTACGAGAATCGATGCTTGTCTTATTTAAGAGACGAACTTAGACTTTAC-AAAAATTG
* * * * * * *
1205 G-GCAAAGAAAATAT---TTCCATGCCAAA--AAAATCATCAATATCATTTATCCTAGTGAGGAG
64 GTG---GGAAAAT-TGCCTTTCTTGCGAAACCAAAA-CATCAATATCATGTATCCTAATGAGAAG
* * **
1264 AATGTGCTTATA-GCACCTAATCAC--AAAATGAAT-GA
124 AATATG-TTTTAGGTTCCTAATC-CTGAAAA-GAATGGA
* * * * *
1299 CGATCA-TTACTAGAATCTATGTTTGTCTCATTTGAG-GCACGAACTTAGACTTTACAAAAATTG
1 -GATCAGTTACGAGAATCGATGCTTGTCTTATTTAAGAG-ACGAACTTAGACTTTACAAAAATTG
* ** * *
1362 GTGGGAAAATTGCCTTTCTTGCTAAACCAAAACATCAATATCGCGTATGCTAATGAGAAGACTAT
64 GTGGGAAAATTGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAATAT
* *
1427 G-TTTATGGTTTCTAATCCTGAAAAGAATGGG
129 GTTTTA-GGTTCCTAATCCTGAAAAGAATGGA
* * * * * * *
1458 GATTAGTGT--GACTATTC-ATGTTTGTCTTATTTAAGAGACAAAATTTGA-TTCTATCAAAAAC
1 GATCAGT-TACGA-GAATCGATGCTTGTCTTATTTAAGAGACGAACTTAGACTT-TA-C-AAAA-
* *** * * * * * * * * *
1519 AATGGAAAGAAAA--GCATTTCTAGGGACACCAAAGCATTAATGTCACGTATCCTTA-GA-AAGG
60 ATTGGTGGGAAAATTGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAA-G
* * *
1580 AAATGTGTTTTAGGTTCCTAATCCTAAAAACAATGGA
124 -AATATGTTTTAGGTTCCTAATCCTGAAAAGAATGGA
*
1617 GA-CTGTTACGAGAATCGATGCTTGTCTTATTTAAGAGACGAACTTAGACTTTACAAAAATTGGT
1 GATCAGTTACGAGAATCGATGCTTGTCTTATTTAAGAGACGAACTTAGACTTTACAAAAATTGGT
* * *
1681 GGGAAAATTGCCTTTCTTGCGAAACCAAAACATCAATTTCACGTATCCTAATGAGAAGACTATGT
66 GGGAAAATTGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAATATGT
1746 T
131 T
1747 ACGGTGCCTA
Statistics
Matches: 1124, Mismatches: 302, Indels: 250
0.67 0.18 0.15
Matches are distributed among these distances:
152 6 0.01
153 8 0.01
154 83 0.07
155 19 0.02
156 49 0.04
157 145 0.13
158 374 0.33
159 290 0.26
160 122 0.11
161 27 0.02
162 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (159 bp):
GATCAGTTACGAGAATCGATGCTTGTCTTATTTAAGAGACGAACTTAGACTTTACAAAAATTGGT
GGGAAAATTGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAATATGT
TTTAGGTTCCTAATCCTGAAAAGAATGGA
Found at i:979 original size:317 final size:311
Alignment explanation
Indices: 553--1186 Score: 785
Period size: 317 Copynumber: 2.0 Consensus size: 311
543 TTTGAGGCAA
* * * *
553 GAACTTAGACTTTACAAAAATTGGTGGGAAAATGGCTTTCTTGCAAAGCCAAAGCATTAATATCG
1 GAACTTAGACTTTACAAAAATTGGTGGGAAAATGCCTCTCTTGCAAAGCCAAAACATCAATATCG
* **
618 TGTATCCTATTGAGAAAAGCATGTTTATGGTGCCTAAACCTGAAAAGAATAGGGATTAGTATGGG
66 TGTATCCTAATGAGAAAAGCATGTTTATGGTGCCTAAACCTGAAAAGAATAGGGATTAGTATGAC
* * *
683 TATTCATGTTTGTCTCATTTAAGAGATAAACTTTGA-TTCTATCAAAA-AAGATGGAAAGAAAAG
131 TATTCATATTTGTCTCATTTAAGAGACAAACTTCGATTTC-ATCAAAAGAAG-TGGAAAGAAAAG
* *
746 CATTGC-CAAGGACACCAAAGCATCAATATCATGTATCCTAAAGAAGGAAATATGTTTTAGGTTC
194 CATTGCTCAAGG-CACCAAAGCATC---A--ATGTATCCTAAAGAAGGAAATAGGTTTTAGGTAC
*
810 CCAATCCTGAAAAGAATGGAGAC-AGTTAAGAGAATCGATGCTTGTCCTATTTAAAGGAT
253 CCAATCCTGAAAAGAATGGAGACTA-TTAAGAGAATCGATGCCTGTCCTATTTAAAGGAT
*
869 GAACTTAGACTTTACAAAAATTGGTGGGAAAATTGCCTCTCTTGCGAAA-CCAAAACATCAATTT
1 GAACTTAGACTTTACAAAAATTGGTGGGAAAA-TGCCTCTCTTGC-AAAGCCAAAACATCAATAT
* * * *
933 CGTGTATCCTAATGAGAAGA-CTATGTTTATGGTGCCTAATCCTGAAAGGAATGGGGATTAGTAT
64 CGTGTATCCTAATGAGAAAAGC-ATGTTTATGGTGCCTAAACCTGAAAAGAATAGGGATTAGTAT
* * *
997 GACTATTCATATTTGTCTTATTTAAGAGACAAACTTCGATTTCATCAAAAGCAGTGGAAGGAAAA
128 GACTATTCATATTTGTCTCATTTAAGAGACAAACTTCGATTTCATCAAAAGAAGTGGAAAGAAAA
* * * * ** * * * *
1062 GCTTTTCTTACGGCACCAAAGCATCAATGTATCCTATTGATGGGAATGGGTTTTTGGTACCCAAT
193 GCATTGCTCAAGGCACCAAAGCATCAATGTATCCTAAAGAAGGAAATAGGTTTTAGGTACCCAAT
* * * * * *
1127 CTTGAAAAGGATGGAGACTATTATGAGAATCGATTCCTGTCTTATTTAAGGGAT
258 CCTGAAAAGAATGGAGACTATTAAGAGAATCGATGCCTGTCCTATTTAAAGGAT
1181 GAACTT
1 GAACTT
1187 TTATTTTACG
Statistics
Matches: 274, Mismatches: 37, Indels: 18
0.83 0.11 0.05
Matches are distributed among these distances:
312 82 0.30
313 1 0.00
314 1 0.00
316 33 0.12
317 146 0.53
318 11 0.04
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.30
Consensus pattern (311 bp):
GAACTTAGACTTTACAAAAATTGGTGGGAAAATGCCTCTCTTGCAAAGCCAAAACATCAATATCG
TGTATCCTAATGAGAAAAGCATGTTTATGGTGCCTAAACCTGAAAAGAATAGGGATTAGTATGAC
TATTCATATTTGTCTCATTTAAGAGACAAACTTCGATTTCATCAAAAGAAGTGGAAAGAAAAGCA
TTGCTCAAGGCACCAAAGCATCAATGTATCCTAAAGAAGGAAATAGGTTTTAGGTACCCAATCCT
GAAAAGAATGGAGACTATTAAGAGAATCGATGCCTGTCCTATTTAAAGGAT
Found at i:1617 original size:787 final size:790
Alignment explanation
Indices: 49--1864 Score: 2589
Period size: 787 Copynumber: 2.3 Consensus size: 790
39 GATCATTACT
* * * *
49 AGAATCCATGTTTG-CCTCATTTAAGACATGAACTTAGACTTTAC-AAAATTGGTGGGAAAAATG
1 AGAATCGATGCTTGTCCT-ATTTAAGAGATGAACTTAGACTTTACAAAAATTGGTGGGAAAATTG
* * * * *
112 CTTTTCTTTCGAAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATGGTGCA
65 CCTTTCTTGCGAAACCAAAACATCAATTTCACGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * * *
177 TAATCCTGAAAAGAAT-GGGATTGGTATGACTTTTCATGTTTATCTTATTTAAAAGAAAAACTTT
130 TAATCCTGAAAGGAATGGGGATTAGTATGACTATTCATATTTGTCTTATTTAAAAGACAAACTTT
** *
241 GATTCCATCAAAAATGGTGAAAGGAAAAGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTAT
195 GATTCCATCAAAAACAGTGAAAGGAAAAGCTTTTCTTACGACACCAAAGCATGAA--T-ATGTAT
* * *
306 CCTATTAATGGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGAAGACTATTACGAGAATCG
257 CCTATTAATGGGAATGGGTTTTTGGTACCCAATCTTGAAAAGAATGAAGACTATTACGAGAATCG
* * *
371 ATGCTTGTCTTATTTAAGGGATGAACTTTGATGTTATGAAAAATAAGGGCAAAGAAAAGATTTTC
322 ATGCCTGTCTTATTTAAGGGATGAACTTTGATGTTACGAAAAATAAGGGCAAAGAAAAGATTTCC
* * *
436 ATGCAAAAGAAAATCATCAATCTCATTTATCCTAGTGAGGAGAAAGTGCTTGTAGCGCCTAATCA
387 ATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAAAGTGCTTATAGCACCTAATCA
* *
501 CGAAATGAATGACTATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTT
452 CAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTT
* * * * *
566 ACAAAAATTGGTGGGAAAATGGCTTTCTTGCAAAGCCAAAGCATTAATATCGTGTATCCTATTGA
517 ACAAAAATTGGTGGGAAAATGCCTTTCTTGCAAAGCCAAAACATCAATATCGCGTATCCTAATGA
**
631 GAAAAGCATGTTTATGGTGCCTAAACCTGAAAAGAATAGGGATTAGTATGGGTATTCATGTTTGT
582 GAAAAGCATGTTTATGGTGCCTAAACCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGT
* *
696 CTCATTTAAGAGATAAACTTTGATTCTATCAAAAAAGATGGAAAGAAAAGCATTGCCAAGGACAC
647 CTCATTTAAGAGACAAAATTTGATTCTATCAAAAAAGATGGAAAGAAAAGCATTGCCAAGGACAC
* * *
761 CAAAGCATCAATATCATGTATCCTAAAGAAGGAAATATGTTTTAGGTTCCCAATCCTGAAAAGAA
712 CAAAGCATCAATATCACGTATCCTAAAGAAGGAAATATGTTTTAGGTTCCCAATCCTAAAAACAA
826 TGGAGACAGTTAAG
777 TGGAGACAGTTAAG
840 AGAATCGATGCTTGTCCTATTTAA-AGGATGAACTTAGACTTTACAAAAATTGGTGGGAAAATTG
1 AGAATCGATGCTTGTCCTATTTAAGA-GATGAACTTAGACTTTACAAAAATTGGTGGGAAAATTG
* **
904 CCTCTCTTGCGAAACCAAAACATCAATTTCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
65 CCTTTCTTGCGAAACCAAAACATCAATTTCACGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* *
969 TAATCCTGAAAGGAATGGGGATTAGTATGACTATTCATATTTGTCTTATTTAAGAGACAAACTTC
130 TAATCCTGAAAGGAATGGGGATTAGTATGACTATTCATATTTGTCTTATTTAAAAGACAAACTTT
* * * * *
1034 GATTTCATCAAAAGCAGTGGAAGGAAAAGCTTTTCTTACGGCACCAAAGCAT-CA-ATGTATCCT
195 GATTCCATCAAAAACAGTGAAAGGAAAAGCTTTTCTTACGACACCAAAGCATGAATATGTATCCT
* * * * *
1097 ATTGATGGGAATGGGTTTTTGGTACCCAATCTTGAAAAGGATGGAGACTATTATGAGAATCGATT
260 ATTAATGGGAATGGGTTTTTGGTACCCAATCTTGAAAAGAATGAAGACTATTACGAGAATCGATG
* * *
1162 CCTGTCTTATTTAAGGGATGAACTTTTATTTTACGAAAAAT-AGGGCAAAGAAAATATTTCCATG
325 CCTGTCTTATTTAAGGGATGAACTTTGATGTTACGAAAAATAAGGGCAAAGAAAAGATTTCCATG
* *
1226 CCAAA-AAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATAGCACCTAATCACAA
390 CAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAAAGTGCTTATAGCACCTAATCACAA
* *
1290 AATGAATGACGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
455 AATGAATGACGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACA
*
1355 AAAATTGGTGGGAAAATTGCCTTTCTTGCTAAA-CCAAAACATCAATATCGCGTATGCTAATGAG
520 AAAATTGGTGGGAAAA-TGCCTTTCTTGC-AAAGCCAAAACATCAATATCGCGTATCCTAATGAG
* ** * * *
1419 AAGA-CTATGTTTATGGTTTCTAATCCTGAAAAGAATGGGGATTAGTGTGACTATTCATGTTTGT
583 AAAAGC-ATGTTTATGGTGCCTAAACCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGT
* * * *
1483 CTTATTTAAGAGACAAAATTTGATTCTATCAAAAACA-ATGGAAAGAAAAGCATTTCTAGGGACA
647 CTCATTTAAGAGACAAAATTTGATTCTATCAAAAA-AGATGGAAAGAAAAGCATTGCCAAGGACA
* * * * *
1547 CCAAAGCATTAATGTCACGTATCCT-TAGAAAGGAAATGTGTTTTAGGTTCCTAATCCTAAAAAC
711 CCAAAGCATCAATATCACGTATCCTAAAG-AAGGAAATATGTTTTAGGTTCCCAATCCTAAAAAC
* *
1611 AATGGAGACTGTTACG
775 AATGGAGACAGTTAAG
* *
1627 AGAATCGATGCTTGTCTTATTTAAGAGACGAACTTAGACTTTACAAAAATTGGTGGGAAAATTGC
1 AGAATCGATGCTTGTCCTATTTAAGAGATGAACTTAGACTTTACAAAAATTGGTGGGAAAATTGC
*
1692 CTTTCTTGCGAAACCAAAACATCAATTTCACGTATCCTAATGAGAAGACTATG-TTACGGTGCCT
66 CTTTCTTGCGAAACCAAAACATCAATTTCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * * *
1756 AATCTTGAAAGGAACGGGGATTAGTATGACTATTCATATTTGTCTTTTTTAATAGTCAAACTTTG
131 AATCCTGAAAGGAATGGGGATTAGTATGACTATTCATATTTGTCTTATTTAAAAGACAAACTTTG
** * * *
1821 ATTCCATCAAAAATGGTGGAAA-GAATAGCTTATCTTGCGACACC
196 ATTCCATCAAAAACAGT-GAAAGGAAAAGCTTTTCTTACGACACC
1865 TTATTTAAGG
Statistics
Matches: 912, Mismatches: 102, Indels: 27
0.88 0.10 0.03
Matches are distributed among these distances:
786 235 0.26
787 353 0.39
788 108 0.12
790 1 0.00
791 35 0.04
792 94 0.10
793 86 0.09
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (790 bp):
AGAATCGATGCTTGTCCTATTTAAGAGATGAACTTAGACTTTACAAAAATTGGTGGGAAAATTGC
CTTTCTTGCGAAACCAAAACATCAATTTCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
AATCCTGAAAGGAATGGGGATTAGTATGACTATTCATATTTGTCTTATTTAAAAGACAAACTTTG
ATTCCATCAAAAACAGTGAAAGGAAAAGCTTTTCTTACGACACCAAAGCATGAATATGTATCCTA
TTAATGGGAATGGGTTTTTGGTACCCAATCTTGAAAAGAATGAAGACTATTACGAGAATCGATGC
CTGTCTTATTTAAGGGATGAACTTTGATGTTACGAAAAATAAGGGCAAAGAAAAGATTTCCATGC
AAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAAAGTGCTTATAGCACCTAATCACAAA
ATGAATGACGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAA
AAATTGGTGGGAAAATGCCTTTCTTGCAAAGCCAAAACATCAATATCGCGTATCCTAATGAGAAA
AGCATGTTTATGGTGCCTAAACCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTCA
TTTAAGAGACAAAATTTGATTCTATCAAAAAAGATGGAAAGAAAAGCATTGCCAAGGACACCAAA
GCATCAATATCACGTATCCTAAAGAAGGAAATATGTTTTAGGTTCCCAATCCTAAAAACAATGGA
GACAGTTAAG
Found at i:3074 original size:474 final size:474
Alignment explanation
Indices: 1864--4165 Score: 2902
Period size: 474 Copynumber: 4.9 Consensus size: 474
1854 CTTGCGACAC
* *
1864 CTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGA-TTTCAATGCAAAT
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTC-ATGCAAAA
* * *
1928 GAAAATCATCAGTATCATTTCTCCTAATGAGGAATGTGTTTATAGTGCCTAATCACAAAATGATT
65 GAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
*
1993 GAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGTCTTTACAAAAATTG
130 GAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
** * * * *
2058 GTGGGAAAAGGGCCTTTCTTGCGAAGCCAAAACTTCAATATCGCATATCCTAAAGGGAAGACTAT
195 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTAT
* * * * * *
2123 GTTTATGGTGCCTAATCCTAAAAATAAT-GGAGGTTAGTTTGACCATTCATGTCTGTCTTATTCT
260 GTTTATGGTGCCTAATCCTGAAAAGAATAGG-GATTAGTATGACTATTCATGTTTGTCTTATT-T
* * * *
2187 --TAGACAAACTTTGATTCCATCAAAAAGGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * *
2250 TCAATGTCATGTATCCT-ATAGAAGGGAATGTGTTTTTGATACCAAATCTTGAAAAGAATGTAGA
388 TCAATGTCATGTATCCTAAT-GAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGA
*
2314 TT-CTTACAAGAATCGATGCTTGT
452 TTGC-TACGAGAATCGATGCTTGT
* * ***
2337 CTTATTTGAGGGATGAACTTTGATTTTAGGGAAAATAAGGCAAAGAAAAGATTTTCGCACAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAG
*
2402 AAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAACGAATG
66 AAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATG
* * *
2467 AAGATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAACTGG
131 AAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG
* * * * * **
2532 CGGGAAAAATGCCTTTCTAGCGAAACTAAAGCATCATTATCGTGTATCCTAATGAGAAGAAC-AT
196 TGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAG-ACTAT
* * *
2596 GTTTACGGTGCCTAATCCAGAAAAGAATATGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
260 GTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* * * * *
2661 AAGACAAACATTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCATGCGACACCAAAGCGTC
325 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * * * * *
2726 AATGTCAAGTATCCTAATGAAGGAAATATGTTTTAGGTTCCTAATCCT-AACAATG-ATGGTGAC
390 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTACCCAATCTTGAA-AA-GAATGGAGAT
* ** **
2789 TGCTATGAGAATCTTTGCCCGT
453 TGCTACGAGAATCGATGCTTGT
* *
2811 CTT-TTTAAGGGATGAACTTTGATTATAAGGAAAATAAGGCAAAGAAAAGATTTTCATGTAGAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCA-AAA
* * * * * * ** * *
2875 -AAAATCATTAATATCATTTATCCTAGTAAGGAGAATTTGCTTCTAGCACCTAATCATAAAATTA
65 GAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGA
* * * * * *
2939 ATGACGATCATTAGTAGAATCCATGTTTGTCTCATTTAAGGCACGAACATAGACTTTACAAAAAT
128 ATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAAT
* *
3004 TGGTGGGAAAATTGCCTTTC-TGAGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACT
193 TGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACT
* * *
3068 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTGTATGACTATTTATGTTTGTCTTATTT
258 ATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* * * *
3133 AAGAGACAAACTTTGATTCCATTAAAAATGGTGGAAAGAAAAGCTGTTCTTGCGACACTAAAGCA
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * *
3198 TCAATGTCATGTATCCTATTGAAGGGAATGTGCTTTTGGTACCCAAACATGGAAAGAATGGAGAT
388 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGAT
* **
3263 TGTTACGAGAATCGGGGCTTGT
453 TGCTACGAGAATCGATGCTTGT
* * * **
3285 CTTTTTTAAGGGATGAACTTTGATTTTAAGGGAAATAGAGGC-AAGAAAAGATTTTGACACAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-AGGCAAAGAAAAGATTTTCATGCAAAA
* *
3349 GAAAATCATCAATATCATTTCTCCGAATGAGGAGAATGTGCATATAGTGCCTAATCACAAAATGA
65 GAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGA
* * *
3414 ATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGAATGAACTTAGACTTTACAAAAAT
128 ATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAAT
* *
3479 TGGTGGG-AAAATGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAG-AGACT
193 TGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACT
* * * * * * *
3542 AAGTTCATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATTAGTATTCATGTTTGTCCTCTTT
258 ATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* * * *
3607 AAGAGAGAAACTTTGATTCTATCAAAAACGG-GGGAAGAAAAG-TTTTCTTGTGACACCAAAGCA
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* *
3670 TCATTGTCATGTATCCTATTGAAGGG-ATGGTGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAG
388 TCAATGTCATGTATCCTAATGAAGGGAAT-GTGTTTTTGG-TACCCAATCTTGAAAAGAATGGAG
* *
3733 ATTGTTACGAGAATTGATGCTTGT
451 ATTGCTACGAGAATCGATGCTTGT
* ** *
3757 CTTATTT-AGGAGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGAGATCCATGCAAAA
1 CTTATTTAAGG-GATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAA
* * * * * *
3821 GAAAATCATCTATATCATTTCTCCTAATGAGGAATATGCTTACAGAGCCTAATCAAAAAATAAAT
65 GAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
* * * * * *
3886 GAAGATTATTACTAGAATCCATGTTTGTCCTATTTGGGGCATGAACTTAGACTTTGCAAAAGTTA
130 GAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * * *
3951 GTGGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATTGCAGATCTTAATGAGAAGACTAT
195 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTAT
*
4016 GTTTATGGTGCCTAATCCTGAAAAGAAT-GAGGATTAGAATGACTATTCATGTTTGTCTTATTTA
260 GTTTATGGTGCCTAATCCTGAAAAGAATAG-GGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * *
4080 ATAGACAAACTTTGATT-TCATAAAAAATGGTGGAAAGGAAAGCTTTTCTTGCGTCACCAAAGCA
324 AGAGACAAACTTTGATTCT-ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
*
4144 TCAATGTCGTGTATCCTAATGA
388 TCAATGTCATGTATCCTAATGA
4166 GAAGACTAAG
Statistics
Matches: 1564, Mismatches: 236, Indels: 57
0.84 0.13 0.03
Matches are distributed among these distances:
470 89 0.06
471 56 0.04
472 253 0.16
473 375 0.24
474 484 0.31
475 303 0.19
476 4 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (474 bp):
CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAG
AAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATG
AAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG
TGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTATG
TTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
ATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGC
TACGAGAATCGATGCTTGT
Found at i:4300 original size:631 final size:620
Alignment explanation
Indices: 3485--4782 Score: 1808
Period size: 631 Copynumber: 2.1 Consensus size: 620
3475 AAATTGGTGG
* * * *
3485 GAAAATGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAGACTAAGTTCAT
1 GAAAA-GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAGACTAAGTTCAT
* * * * * *
3550 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATTAGTATTCATGTTTGTCCTCTTTAAGAGAGA
65 GGTGCCTAATCCTAAAAAAAATAGGGATTAGTATGAGTATTCATGTTTGTCCTATTTAAGAGACA
* * *
3615 AACTTTGATTCTATCAAAAACGGGGGAAGAAAAGTTTTCTTGTGACACCAAAGCATCATTGTC-A
130 AACTTTGATTCTACCAAAAACGGGGGAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTA
** *
3679 TGTATCCTATTGAAGGGATGGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAG
195 -GTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAG
*
3744 AATTGATGCTTGTCTTATTTAGGA-GATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGA
259 AATCGATGCTTGTCTT-TTTAGGAGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGA
* *
3808 GATCCATGCAAAAGAAAATCATC-TATATCATTTCTCCTAATGAGGAATATGCTTACAGAGCCTA
323 GATCCATCCAAAAAAAAATCATCAT-TATCATTTCTCCTAATGAGGAATATGCTTACAGAG-CTA
* * *
3872 ATCAAAAAATAAATGAAGATTATTACTAGAATCCATGTTTGTCCTATTTGGGGCATGAACTTAGA
386 ATCAAAAAATAAATGAAGATCATTAC-----T--ATGTTTGTCCCATTTGAGGCATGAACTTAGA
** * * *
3937 CTTTGCAAAAGTTAGTGGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATTGCAG-AT-C
444 CCATACAAAAATTAGTGGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATCGC-GTATGC
* * * *
4000 TTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG-AGGATTAGAATGACTATTC
508 -CAAAGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAAGG-TTAGAATGACCATTC
* *
4064 ATGTTTGTCTTATT-TAATAGACAAACTTTGATTTCATA-AAAAATGGTGGAAA
571 ATGTCTGTCTTATTCT--TAGACAAACTTTGA-TTC-TACAAAAATGGGGGAAA
* * *
4116 GGAAAGCTTTTCTTGCGTCACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTAAGTTTAT
1 GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAG-AGACTAAGTTCAT
*
4181 GGTGCCTAATCC-AAAAAAAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
65 GGTGCCTAATCCTAAAAAAAATAGGGATTAGTATGAGTATTCATGTTTGTCCTATTTAAGAGACA
* * *
4245 AACTTTGATTTTACCGAAAATGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCT
130 AACTTTGATTCTACCAAAAACGGGGG-AAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCT
4310 AGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAG
194 AGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAG
* * *
4375 AATCGATGCTTGTCTTTTTTGTAGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGAT
259 AATCGATGCTTGTCTTTTTAGGAGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGAG
* * * * *
4440 TTCCATCCAAAAAAAAATCATCATTATCATTTCTCCTAATGAGGATTGTGCTTATAGTGCTAATC
324 ATCCATCCAAAAAAAAATCATCATTATCATTTCTCCTAATGAGGAATATGCTTACAGAGCTAATC
* *
4505 ACAAAATGAATGAAGATCATTACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAA
389 AAAAAATAAATGAAGATCATTACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAA
* * * *
4570 ATTGGTGGGAAAAAGGCCTTTCTTGGGAAACCAAAACATCAATATCGCGTATGCCAAAGGGAAGA
454 ATTAGTGGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATCGCGTATGCCAAAGAGAAGA
**
4635 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGAAGGTTAGTTTGACCATTCATGTCTGTCTTAT
519 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGAAGGTTAGAATGACCATTCATGTCTGTCTTAT
4700 TCTTAGACAAACTTTGATTCTACCAAAAATGGGGGAAA
584 TCTTAGACAAACTTTGATTCTA-CAAAAATGGGGGAAA
4738 GAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTC-TAGTATCCTA
1 GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGT-GTATCCTA
4783 TTGAAGGGAC
Statistics
Matches: 597, Mismatches: 58, Indels: 34
0.87 0.08 0.05
Matches are distributed among these distances:
620 3 0.01
621 39 0.07
622 33 0.06
623 146 0.24
624 5 0.01
625 1 0.00
630 139 0.23
631 229 0.38
632 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (620 bp):
GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAGACTAAGTTCATG
GTGCCTAATCCTAAAAAAAATAGGGATTAGTATGAGTATTCATGTTTGTCCTATTTAAGAGACAA
ACTTTGATTCTACCAAAAACGGGGGAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAG
TATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAA
TCGATGCTTGTCTTTTTAGGAGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGAGAT
CCATCCAAAAAAAAATCATCATTATCATTTCTCCTAATGAGGAATATGCTTACAGAGCTAATCAA
AAAATAAATGAAGATCATTACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAAT
TAGTGGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATCGCGTATGCCAAAGAGAAGACT
ATGTTTATGGTGCCTAATCCTAAAAAGAATGAAGGTTAGAATGACCATTCATGTCTGTCTTATTC
TTAGACAAACTTTGATTCTACAAAAATGGGGGAAA
Found at i:5788 original size:464 final size:464
Alignment explanation
Indices: 4135--6555 Score: 3663
Period size: 464 Copynumber: 5.2 Consensus size: 464
4125 TTCTTGCGTC
* * * * * *
4135 ACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCC-AAAAAA
1 ACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
* ** * *
4199 AAT-AGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTACCGAA
66 AATGAAGGATTAGTATGACCATTCATGTTTGTCTTATTT-A-AGACAAACTTTGATTCTACCAAA
4263 AATGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGA
129 AATGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGA
*
4328 CAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTT
194 CAGTGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTT
* *
4393 TTGTAGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAAAAAAT
259 TTGTGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAAT
*
4458 CATCATTATCATTTCTCCTAATGAGGATTGTGCTTATAGTGCTAATCACAAAATGAATGAAGATC
324 CATCATTATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCTAATCACAAAATGAATGAAGATC
4523 ATTACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGGCC
389 ATTACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGGCC
4588 TTTCTTGGGAA
454 TTTCTTGGGAA
*
4599 ACCAAAACATCAATATCGCGTATGCC-AAAGGGAAGACTATGTTTATGGTGCCTAATCCTAAAAA
1 ACCAAAACATCAATATCGCGTAT-CCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAA
* * *
4663 GAATGAAGG-TTAGTTTGACCATTCATGTCTGTCTTATTCTTAGACAAACTTTGATTCTACCAAA
65 GAATGAAGGATTAGTATGACCATTCATGTTTGTCTTATT-TAAGACAAACTTTGATTCTACCAAA
4727 AATGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGA
129 AATGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGA
* **
4792 CTGTGTTTTTGGCTCCTAATCTTGAAAAGAACAGAGATTATTACGAGAATCGATGCTTGTCTTTT
194 CAGTGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTT
* *
4857 TTGTGGGATGAACTTTGATTTTATGGAAAGTAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAAA
259 TTGTGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAAT
* *
4922 CATCATTACCATTTCTCCTAATGAGGAATATGCTT-T-GATGCTAATCACAAAATGAATGAAGAT
324 CATCATTATCATTTCTCCTAATGAGGAATGTGCTTATAG-TGCTAATCACAAAATGAATGAAGAT
* ** *
4985 CATTACTAGAATCCATGTTTGCCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTAGTGGGA
388 CATTAC-----T--ATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAATTGGTGGGA
* *
5050 AAAAGGCCTTTCATGCGAA
446 AAAAGGCCTTTCTTGGGAA
* * * * *
5069 ACCAAAACATCAATATTGCATATCCTAATGAGAAGACAATGTTTATGGTGCCTAAT-CAAGAAAA
1 ACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAA
* ** *
5133 GAATG-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAA
65 GAATGAAGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGA--CAAACTTTGATTCTACCAA
* * * *
5197 AAACGGGGGAAAGAAAAGTTTTCTTGTGATACCAAAGCATCAATGTCAAGTATCCTATTGAAGGG
128 AAATGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGG
*
5262 ACAGTGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTT
193 ACAGTGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTT
* *
5327 TTTAG-GGGATGAACATTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
258 TTT-GTGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAA
* *
5391 ATCATCAATATCATTTCTCCTAATGAGGATTGTGCTTATAGTGCTAATCACAAAATGAATGAAGA
322 ATCATCATTATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCTAATCACAAAATGAATGAAGA
5456 TCATTACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGG
387 TCATTACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGG
5521 CCTTTCTTGGGAA
452 CCTTTCTTGGGAA
*
5534 ACCAAAACATCAATATCGCGTATGCC-AAAGGGAAGACTATGTTTATGGTGCCTAATCCTAAAAA
1 ACCAAAACATCAATATCGCGTAT-CCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAA
* * *
5598 GAATGAAGG-TTAGTTTGACCATTCATGTCTGTCTTATTCTTAGACAAACTTTGATTCTACCAAA
65 GAATGAAGGATTAGTATGACCATTCATGTTTGTCTTATT-TAAGACAAACTTTGATTCTACCAAA
* *
5662 AATGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTAAAAGGA
129 AATGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGA
* *
5727 CTGTGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTATTACGAGAATTGATGCTTGTCTTTT
194 CAGTGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTT
5792 TTGTGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAAT
259 TTGTGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAAT
5857 CATCATTATCATTTCTCCTAATGAGGAATGTGCTT-T-GATGCTAATCACAAAATGAATGAAGAT
324 CATCATTATCATTTCTCCTAATGAGGAATGTGCTTATAG-TGCTAATCACAAAATGAATGAAGAT
* * ** **
5920 CATTACTAGAATCCATGTTTGCCCCATTTGAGGCATGAACTTATACTTTACAAAAATCAGTGGGA
388 CATTAC-----T--ATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAATTGGTGGGA
** *
5985 AAAAGGCCTTTGATGCGAA
446 AAAAGGCCTTTCTTGGGAA
* * * *
6004 ACCAAAACATCAATATTGCATATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCC-AGAAAA
1 ACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAA
* ** *
6068 GAATG-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAA
65 GAATGAAGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGA--CAAACTTTGATTCTACCAA
* * *
6132 AAACGGGGGAAAGAAAAGTTTTCTTGCGATACCAAAGCATCAATGTCAAGTATCCTATTGAAGGG
128 AAATGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGG
*
6197 ACAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTT
193 ACAGTGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTT
*
6262 TTTAG-GGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
258 TTT-GTGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAA
*
6326 ATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCTAATCACAAAATGAATGAAGA
322 ATCATCATTATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCTAATCACAAAATGAATGAAGA
6391 TCATTACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGG
387 TCATTACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGG
6456 CCTTTCTTGGGAA
452 CCTTTCTTGGGAA
* * * *
6469 ACCAAAACATCAATATCGTGTATGCC-AAAGGGAAGACTATGTTTATGGTACCTAATCCTAAAAG
1 ACCAAAACATCAATATCGCGTAT-CCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAA
*
6533 GAATGAAGG-TTAGTTTGACCATT
65 GAATGAAGGATTAGTATGACCATT
6556 TGATGAAAAC
Statistics
Matches: 1768, Mismatches: 145, Indels: 87
0.88 0.07 0.04
Matches are distributed among these distances:
462 2 0.00
463 65 0.04
464 523 0.30
465 309 0.17
466 19 0.01
467 2 0.00
468 2 0.00
469 19 0.01
470 291 0.16
471 468 0.26
472 66 0.04
473 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (464 bp):
ACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
AATGAAGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGACAAACTTTGATTCTACCAAAAA
TGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGACA
GTGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTTTT
GTGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAATCA
TCATTATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCTAATCACAAAATGAATGAAGATCAT
TACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGGCCTT
TCTTGGGAA
Found at i:5872 original size:935 final size:935
Alignment explanation
Indices: 4155--6555 Score: 4450
Period size: 935 Copynumber: 2.6 Consensus size: 935
4145 CAATGTCGTG
*
4155 TATCCTAATGAGAAGACTAA-GTTTATGGTGCCTAATCCAA-AAAA-AATAGGGATTAGTATGAG
1 TATCCTAATGAGAAGAC-AATGTTTATGGTGCCTAAT-CAAGAAAAGAATGGGGATTAGTATGAG
* * * * *
4217 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTACCGAAAATGGGGGAAAGAAAAGTT
64 TATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTT
* *
4282 TTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAA
129 TTCTTGCGATACCAAAGCATCAATGTCAAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAA
*
4347 TCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTTTT-GTAGGATGAACTTTGA
194 TCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTTTTAG-GGGATGAACTTTGA
* * *
4411 TTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAAAAAATCATCATTATCATTTCTCC
258 TTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCC
4476 TAATGAGGATTGTGCTTATAGTGCTAATCACAAAATGAATGAAGATCATTACTATGTTTGTCCCA
323 TAATGAGGATTGTGCTTATAGTGCTAATCACAAAATGAATGAAGATCATTACTATGTTTGTCCCA
4541 TTTGAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGGCCTTTCTTGGGAAACCAAAA
388 TTTGAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGGCCTTTCTTGGGAAACCAAAA
4606 CATCAATATCGCGTATGCCAAAGGGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAAG
453 CATCAATATCGCGTATGCCAAAGGGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAAG
4671 GTTAGTTTGACCATTCATGTCTGTCTTATTCTTAGACAAACTTTGATTCTACCAAAAATGGGGGA
518 GTTAGTTTGACCATTCATGTCTGTCTTATTCTTAGACAAACTTTGATTCTACCAAAAATGGGGGA
* *
4736 AAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGACTGTGTTTT
583 AAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTAAAAGGACTGTGTTTT
4801 TGGCTCCTAATCTTGAAAAGAACAGAGATTATTACGAGAATCGATGCTTGTCTTTTTTGTGGGAT
648 TGGCTCCTAATCTTGAAAAGAACAGAGATTATTACGAGAATCGATGCTTGTCTTTTTTGTGGGAT
*
4866 GAACTTTGATTTTATGGAAAGTAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAAACATCATTAC
713 GAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAAACATCATTAC
4931 CATTTCTCCTAATGAGGAATATGCTTTGATGCTAATCACAAAATGAATGAAGATCATTACTAGAA
778 CATTTCTCCTAATGAGGAATATGCTTTGATGCTAATCACAAAATGAATGAAGATCATTACTAGAA
*
4996 TCCATGTTTGCCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTAGTGGGAAAAAGGCCTTT
843 TCCATGTTTGCCCCATTTGAGGCATGAACTTAGACTTTACAAAAATCAGTGGGAAAAAGGCCTTT
5061 CATGCGAAACCAAAACATCAATATTGCA
908 CATGCGAAACCAAAACATCAATATTGCA
5089 TATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCAAGAAAAGAATGGGGATTAGTATGAGTA
1 TATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCAAGAAAAGAATGGGGATTAGTATGAGTA
5154 TTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTT
66 TTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTT
* *
5219 CTTGTGATACCAAAGCATCAATGTCAAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCTAATC
131 CTTGCGATACCAAAGCATCAATGTCAAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATC
* *
5284 TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAGGGGATGAACATTGATTT
196 TTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTTTTAGGGGATGAACTTTGATTT
5349 TATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAA
261 TATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAA
5414 TGAGGATTGTGCTTATAGTGCTAATCACAAAATGAATGAAGATCATTACTATGTTTGTCCCATTT
326 TGAGGATTGTGCTTATAGTGCTAATCACAAAATGAATGAAGATCATTACTATGTTTGTCCCATTT
5479 GAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGGCCTTTCTTGGGAAACCAAAACAT
391 GAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGGCCTTTCTTGGGAAACCAAAACAT
5544 CAATATCGCGTATGCCAAAGGGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAAGGTT
456 CAATATCGCGTATGCCAAAGGGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAAGGTT
5609 AGTTTGACCATTCATGTCTGTCTTATTCTTAGACAAACTTTGATTCTACCAAAAATGGGGGAAAG
521 AGTTTGACCATTCATGTCTGTCTTATTCTTAGACAAACTTTGATTCTACCAAAAATGGGGGAAAG
5674 AAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTAAAAGGACTGTGTTTTTGG
586 AAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTAAAAGGACTGTGTTTTTGG
** *
5739 CTCCTAATCTTGAAAAGAATGGAGATTATTACGAGAATTGATGCTTGTCTTTTTTGTGGGATGAA
651 CTCCTAATCTTGAAAAGAACAGAGATTATTACGAGAATCGATGCTTGTCTTTTTTGTGGGATGAA
* *
5804 CTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAATCATCATTATCAT
716 CTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAAACATCATTACCAT
*
5869 TTCTCCTAATGAGGAATGTGCTTTGATGCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
781 TTCTCCTAATGAGGAATATGCTTTGATGCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* *
5934 ATGTTTGCCCCATTTGAGGCATGAACTTATACTTTACAAAAATCAGTGGGAAAAAGGCCTTTGAT
846 ATGTTTGCCCCATTTGAGGCATGAACTTAGACTTTACAAAAATCAGTGGGAAAAAGGCCTTTCAT
5999 GCGAAACCAAAACATCAATATTGCA
911 GCGAAACCAAAACATCAATATTGCA
*
6024 TATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTA
1 TATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCAAGAAAAGAATGGGGATTAGTATGAGTA
6089 TTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTT
66 TTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTT
6154 CTTGCGATACCAAAGCATCAATGTCAAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATC
131 CTTGCGATACCAAAGCATCAATGTCAAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATC
6219 TTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTTTTAGGGGATGAACTTTGATTT
196 TTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTTTTAGGGGATGAACTTTGATTT
6284 TATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAA
261 TATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAA
*
6349 TGAGGAATGTGCTTATAGTGCTAATCACAAAATGAATGAAGATCATTACTATGTTTGTCCCATTT
326 TGAGGATTGTGCTTATAGTGCTAATCACAAAATGAATGAAGATCATTACTATGTTTGTCCCATTT
6414 GAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGGCCTTTCTTGGGAAACCAAAACAT
391 GAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGGCCTTTCTTGGGAAACCAAAACAT
* * *
6479 CAATATCGTGTATGCCAAAGGGAAGACTATGTTTATGGTACCTAATCCTAAAAGGAATGAAGGTT
456 CAATATCGCGTATGCCAAAGGGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAAGGTT
6544 AGTTTGACCATT
521 AGTTTGACCATT
6556 TGATGAAAAC
Statistics
Matches: 1426, Mismatches: 37, Indels: 7
0.97 0.03 0.00
Matches are distributed among these distances:
933 5 0.00
934 37 0.03
935 1383 0.97
936 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (935 bp):
TATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCAAGAAAAGAATGGGGATTAGTATGAGTA
TTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTT
CTTGCGATACCAAAGCATCAATGTCAAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATC
TTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTTTTAGGGGATGAACTTTGATTT
TATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAA
TGAGGATTGTGCTTATAGTGCTAATCACAAAATGAATGAAGATCATTACTATGTTTGTCCCATTT
GAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGGCCTTTCTTGGGAAACCAAAACAT
CAATATCGCGTATGCCAAAGGGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAAGGTT
AGTTTGACCATTCATGTCTGTCTTATTCTTAGACAAACTTTGATTCTACCAAAAATGGGGGAAAG
AAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTAAAAGGACTGTGTTTTTGG
CTCCTAATCTTGAAAAGAACAGAGATTATTACGAGAATCGATGCTTGTCTTTTTTGTGGGATGAA
CTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAAACATCATTACCAT
TTCTCCTAATGAGGAATATGCTTTGATGCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
ATGTTTGCCCCATTTGAGGCATGAACTTAGACTTTACAAAAATCAGTGGGAAAAAGGCCTTTCAT
GCGAAACCAAAACATCAATATTGCA
Found at i:6258 original size:158 final size:156
Alignment explanation
Indices: 2169--6353 Score: 974
Period size: 158 Copynumber: 26.7 Consensus size: 156
2159 GTTTGACCAT
* * * *
2169 TCATGTCTGTCTTATTCTTAGA--CA-AACTTTGATTCCATCAAAAA-GGGTGAAAAGAAAAGCT
1 TCATGTTTGTCTTA-T-TTAGAGGCAGAACTTTGATTCTATCAAAAATGGG-GGAAAGAAAAGAT
* * * * * *
2230 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-ATAGAAGGGA-ATGTGTTTTTGATACC
63 TTTCATGCGAAACCAAAACATCAATATCAAGTATCCTAAT-G-AGGGACA-GTGTTTTTGGT-CC
* * * * *
2293 AAATCTTGAAAAGAATGTAGATTCTTACAAGAA
124 TAATCTAGAAAAGAATGGAGATTATTACGAGAA
* * * *** ** *
2326 TCGATGCTTGTCTTATTT-GAGGGATGAACTTTGATTTTAGGGAAAATAAGGCAAAGAAAAGATT
1 TC-ATGTTTGTCTTATTTAGAGGCA-GAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATT
* ** ** * * * *
2390 TTC--GCACAAAAGAAAATCATCAATATCATTTCTCCTAATGA-GGA-ATGTGCTTATAGTGCCT
64 TTCATGC-GAAACCAAAA-CATCAATATCAAGTATCCTAATGAGGGACA-GTGTTTTTGGT-CCT
* * * * *
2451 AATC-ACAAAACGAATGAAGATCATTGCTAGAA
125 AATCTAGAAAA-GAATGGAGATTATTACGAGAA
* ** * *
2483 TCCAAGTTTGTCCCATTT-GAGGCATGAACTTAGACTT-TA-CAAAAACTGGCGGG-AA-AAATG
1 T-CATGTTTGTCTTATTTAGAGGCA-GAACTTTGA-TTCTATCAAAAA-TGG-GGGAAAGAAAAG
** * * * ** * **
2543 CCTTTC-TAGCGAAACTAAAGCATCATTATCGTGTATCCTAATGAGAAGAACA-TGTTTACGGTG
61 ATTTTCAT-GCGAAACCAAAACATCAATATCAAGTATCCTAATGAG--GGACAGTGTTTTTGGT-
* * * * * *
2606 CCTAATCCAGAAAAGAATATG-GATTAGTATGACTAT
122 CCTAATCTAGAAAAGAAT-GGAGATTATTACGA-GAA
* * * ** *
2642 TCATGTTTGTCTTATTTAAAAGACA-AACATTGATTCTATCAAAAATGATGGAAAGAAAAGCTTT
1 TCATGTTTGTCTTATTT-AGAGGCAGAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATTT
* * * * * * * *
2706 TCATGCGACACCAAAGCGTCAATGTCAAGTATCCTAATGAAGGAAATATGTTTTAGGTTCCTAAT
65 TCATGCGAAACCAAAACATCAATATCAAGTATCCTAATGAGGGACA-GTGTTTTTGG-TCCTAAT
* * * ** *
2771 CCTA-ACAATG-ATGGTGACTGCTATGAGAA
128 -CTAGA-AAAGAATGGAGATTATTACGAGAA
* *** * * *** ** *
2800 TCTTTGCCCGTCTT-TTTA-AGGGATGAACTTTGATTATAAGGAAAATAAGGCAAAGAAAAGATT
1 TC-ATGTTTGTCTTATTTAGAGGCA-GAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATT
* * ** * * * * * **
2863 TTCATGTAGAAA--AAAATCATTAATATCATTTATCCTAGTAAGGAGA-ATTTGCTTCTAGCACC
64 TTCATG-CGAAACCAAAA-CATCAATATCAAGTATCCTAATGAGG-GACA-GTG-TTTTTGGTCC
** *
2925 TAATCATA-AAATTAAT-GACGATCATTA-GTAGAA
124 TAATC-TAGAAAAGAATGGA-GATTATTACG-AGAA
* * * **
2958 TCCATGTTTGTCTCATTTA-AGGCACGAACATAGACTT-TA-CAAAAATTGGTGGG-AA-AATTG
1 T-CATGTTTGTCTTATTTAGAGGCA-GAACTTTGA-TTCTATCAAAAA-TGG-GGGAAAGAAAAG
** * * * *
3018 CCTTTC-TGAGAAACCAAAACATCAATATCGCA-TATCCTAATGAGAAGACTA-TGTTTATGGTG
61 ATTTTCATGCGAAACCAAAACATCAATATC-AAGTATCCTAATGAG-GGAC-AGTGTTTTTGGT-
* * * *
3080 CCTAATCCT-GAAAAGAATGGGGATT-TGTATGACTAT
122 CCTAAT-CTAGAAAAGAATGGAGATTAT-TACGA-GAA
* * * * * * *
3116 TTATGTTTGTCTTATTTAAGAGACA-AACTTTGATTCCATTAAAAATGGTGGAAAGAAAAGCTGT
1 TCATGTTTGTCTTATTT-AGAGGCAGAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATTT
* * * * * * * * *
3180 TCTTGCGACACTAAAGCATCAATGTCATGTATCCTATTGAAGGGA-ATGTGCTTTTGGTACCCAA
65 TCATGCGAAACCAAAACATCAATATCAAGTATCCTAATG-AGGGACA-GTGTTTTTGGT-CCTAA
* * *
3244 AC-ATGGAAAGAATGGAGATTGTTACGAGAA
127 TCTA-GAAAAGAATGGAGATTATTACGAGAA
** * * * * **** * * *
3274 TCGGGGCTTGTCTTTTTTA-AGGGATGAACTTTGATTTTAAGGGAAATAGAGGCAAGAAAAGATT
1 TC-ATGTTTGTCTTATTTAGAGGCA-GAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATT
* ** ** ** * * ** * *
3338 TTGACAC-AAAAGAAAATCATCAATATCATTTCTCCGAATGAGGAGA-ATGTGCATATAGTGCCT
64 TTCATGCGAAACCAAAA-CATCAATATCAAGTATCCTAATGAGG-GACA-GTGTTTTTGGT-CCT
* * * *
3401 AATC-ACAAAATGAATGAAGATCATTACTAGAA
125 AATCTAGAAAA-GAATGGAGATTATTACGAGAA
* * * * *
3433 TCCATGTTTATCTCATTT-GAGGAATGAACTTAGACTT-TA-CAAAAATTGGTGGG--A-AAATG
1 T-CATGTTTGTCTTATTTAGAGGCA-GAACTTTGA-TTCTATCAAAAA-TGG-GGGAAAGAAAAG
* * ** * * **
3492 CTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAGACTA-AGTTCATGGTGCC
61 ATTTTCATGCGAAACCAAAACATCAATATCAAGTATCCTAATGAGGGAC-AGTGTTTTTGGT-CC
* * ** *
3556 TAATCCT-GAAAAGAATGGGGATTAGTATTAGTAT
124 TAAT-CTAGAAAAGAATGGAGATTATTACGAG-AA
* * *
3590 TCATGTTTGTCCTCTTTA-AGAG-AGAAACTTTGATTCTATCAAAAACGGGGG-AAGAAAAG-TT
1 TCATGTTTGTCTTATTTAGAG-GCAG-AACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATT
* * * * * * * * ** *
3651 TTCTTGTGACACCAAAGCATCATTGTCATGTATCCTATTGAAGGGATGGTGTTTTTGGCTCCCAA
64 TTCATGCGAAACCAAAACATCAATATCAAGTATCCTAATG-AGGGACAGTGTTTTTGG-TCCTAA
* *
3716 TCTTGAAAAGAATGGAGATTGTTACGAGAA
127 TCTAGAAAAGAATGGAGATTATTACGAGAA
* * * ** ** * *
3746 TTGATGCTTGTCTTATTTAG-GAG-ATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGAG
1 -TCATGTTTGTCTTATTTAGAG-GCA-GAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGAT
* * ** * ** * * * ***
3809 ATCCATGC-AAAAGAAAATCATCTATATCATTTCTCCTAATGAGGAATA-TGCTTACAGAG-CCT
63 TTTCATGCGAAACCAAAA-CATCAATATCAAGTATCCTAATGAGGGACAGTG-TTTTTG-GTCCT
* * * *
3871 AATC-AAAAAATAAATGAAGATTATTACTAGAA
125 AATCTAGAAAA-GAATGGAGATTATTACGAGAA
* * * * * * *
3903 TCCATGTTTGTCCTATTT-GGGGCATGAACTTAGACTT-T-GCAAAAGTTAGTGGG-AA-AAAGG
1 T-CATGTTTGTCTTATTTAGAGGCA-GAACTTTGA-TTCTATCAAAA-AT-GGGGGAAAGAAAAG
** * * *
3963 CCTTTCATGCGAAACCAAAACATCAATATTGC-AG-ATCTTAATGAGAAGACTA-TGTTTATGGT
61 ATTTTCATGCGAAACCAAAACATCAATA-T-CAAGTATCCTAATGAG-GGAC-AGTGTTTTTGGT
** * * *
4025 GCCTAATCCT-GAAAAGAAT-GAGGATTAGAATGACTAT
122 -CCTAAT-CTAGAAAAGAATGGA-GATTATTACGA-GAA
* * * * * *
4062 TCATGTTTGTCTTATTTAATAGACA-AACTTTGATT-TCATAAAAAATGGTGGAAAGGAAAGCTT
1 TCATGTTTGTCTTATTT-AGAGGCAGAACTTTGATTCT-ATCAAAAATGGGGGAAAGAAAAGATT
* ** * * ** * * *
4125 TTCTTGCGTCACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTA-AGTTTATGGTGCCTA
64 TTCATGCGAAACCAAAACATCAATATCAAGTATCCTAATGAG-GGAC-AGTGTTTTTGGT-CCTA
* * * * *
4189 ATCCA-AAAAAAATAGG-GATTAGTATGAGTAT
126 ATCTAGAAAAGAAT-GGAGATTATTACGAG-AA
* * * *
4220 TCATGTTTGTCTTATTTAAGAGACA-AACTTTGATTTTACCGAAAATGGGGGAAAGAAAAG-TTT
1 TCATGTTTGTCTTATTT-AGAGGCAGAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATTT
* * * * * * *
4283 TCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAAT
65 TCATGCGAAACCAAAACATCAATATCAAGTATCCTAATG-AGGGACAGTGTTTTTGG-TCCTAAT
*
4348 CTTGAAAAGAATGGAGATTATTACGAGAA
128 CTAGAAAAGAATGGAGATTATTACGAGAA
* * * ** ** *
4377 TCGATGCTTGTCTT-TTTTGTAGG-ATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGAT
1 TC-ATGTTTGTCTTATTTAG-AGGCA-GAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGAT
* * ** * ** * ** * * * *
4440 TTCCAT-CCAAAAAAAAATCATCATTATCATTTCTCCTAATGA-GGATTGTGCTTATAGTGCTAA
63 TTTCATGCGAAACCAAAA-CATCAATATCAAGTATCCTAATGAGGGACAGTGTTTTTGGTCCTAA
* * *
4503 TC-ACAAAATGAATGAAGATCATTAC-----
127 TCTAGAAAA-GAATGGAGATTATTACGAGAA
** * * * *
4528 T-ATGTTTGTCCCATTT-GAGGCATGAACTTAGA--CCATACAAAAATTGGTGGG-AA-AAAGGC
1 TCATGTTTGTCTTATTTAGAGGCA-GAACTTTGATTCTAT-CAAAAA-TGG-GGGAAAGAAAAGA
* * * ** * *
4587 CTTTCTTGGGAAACCAAAACATCAATATCGCGTATGCC-AAAG-GGAAGACTA-TGTTTATGGTG
62 TTTTCATGCGAAACCAAAACATCAATATCAAGTAT-CCTAATGAGG--GAC-AGTGTTTTTGGT-
* * * * *
4649 CCTAATCCTA-AAAAGAATGAAGGTTAGTT-TGACCAT
122 CCTAAT-CTAGAAAAGAATGGAGATTA-TTACGA-GAA
* *
4685 TCATGTCTGTCTTATTCTTAGA--CA-AACTTTGATTCTACCAAAAATGGGGGAAAGAAAAG-TT
1 TCATGTTTGTCTTA-T-TTAGAGGCAGAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATT
* * * * * * *
4746 TTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGACTGTGTTTTTGGCTCCTAA
64 TTCATGCGAAACCAAAACATCAATATCAAGTATCCTAATG-AGGGACAGTGTTTTTGG-TCCTAA
* **
4811 TCTTGAAAAGAACAGAGATTATTACGAGAA
127 TCTAGAAAAGAATGGAGATTATTACGAGAA
* * * * * ** * ** *
4841 TCGATGCTTGTCTT-TTTTGTGGGATGAACTTTGATTTTATGGAAAGTAAGGCAAAGAAAAGATT
1 TC-ATGTTTGTCTTATTTAGAGGCA-GAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATT
* * * ** * * ** * * * * * *
4905 TCCATCCAAAAGAAAAACATCATTACCATTTCTCCTAATGAGGAATA-TG-CTTTGATGCTAATC
64 TTCATGCGAAACCAAAACATCAATATCAAGTATCCTAATGAGGGACAGTGTTTTTGGTCCTAATC
* * * *
4968 -ACAAAATGAATGAAGATCATTACTAGAA
129 TAGAAAA-GAATGGAGATTATTACGAGAA
* ** * * *
4996 TCCATGTTTGCCCCATTT-GAGGCATGAACTTAGACTT-TA-CAAAAATTAGTGGG-AA-AAAGG
1 T-CATGTTTGTCTTATTTAGAGGCA-GAACTTTGA-TTCTATCAAAAA-T-GGGGGAAAGAAAAG
** * * *
5056 CCTTTCATGCGAAACCAAAACATCAATATTGC-A-TATCCTAATGAGAAGACAATGTTTATGGTG
61 ATTTTCATGCGAAACCAAAACATCAATA-T-CAAGTATCCTAATGAG-GGACAGTGTTTTTGGT-
* * * * *
5119 CCTAATCAAGAAAAGAATGGGGATTAGTATGAGTAT
122 CCTAATCTAGAAAAGAATGGAGATTATTACGAG-AA
*
5155 TCATGTTTGTCTTATTTAAGAGGCA-AACTTTGATTCTATCAAAAACGGGGGAAAGAAAAG-TTT
1 TCATGTTTGTCTTATTT-AGAGGCAGAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATTT
* * * * * *
5218 TCTTGTGATACCAAAGCATCAATGTCAAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCTAAT
65 TCATGCGAAACCAAAACATCAATATCAAGTATCCTAATG-AGGGACAGTGTTTTTGG-TCCTAAT
* *
5283 CTTGAAAAGAATGGAGATTGTTACGAGAA
128 CTAGAAAAGAATGGAGATTATTACGAGAA
* * * * * ** ** *
5312 TCGATGCTTGTCTTTTTTAG-GGGATGAACATTGATTTTATGGAAAATAAGGCAAAGAAAAGATT
1 TC-ATGTTTGTCTTATTTAGAGGCA-GAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATT
* ** ** * ** * * * *
5376 TCCATGC-AAAAGAAAATCATCAATATCATTTCTCCTAATGA-GGATTGTGCTTATAGTGCTAAT
64 TTCATGCGAAACCAAAA-CATCAATATCAAGTATCCTAATGAGGGACAGTGTTTTTGGTCCTAAT
* * *
5439 C-ACAAAATGAATGAAGATCATTAC-----
128 CTAGAAAA-GAATGGAGATTATTACGAGAA
** * * * *
5463 T-ATGTTTGTCCCATTT-GAGGCATGAACTTAGA--CCATACAAAAATTGGTGGG-AA-AAAGGC
1 TCATGTTTGTCTTATTTAGAGGCA-GAACTTTGATTCTAT-CAAAAA-TGG-GGGAAAGAAAAGA
* * * ** * *
5522 CTTTCTTGGGAAACCAAAACATCAATATCGCGTATGCC-AAAG-GGAAGACTA-TGTTTATGGTG
62 TTTTCATGCGAAACCAAAACATCAATATCAAGTAT-CCTAATGAGG--GAC-AGTGTTTTTGGT-
* * * * *
5584 CCTAATCCTA-AAAAGAATGAAGGTTAGTT-TGACCAT
122 CCTAAT-CTAGAAAAGAATGGAGATTA-TTACGA-GAA
* *
5620 TCATGTCTGTCTTATTCTTAGA--CA-AACTTTGATTCTACCAAAAATGGGGGAAAGAAAAG-TT
1 TCATGTTTGTCTTA-T-TTAGAGGCAGAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATT
* * * * * * * * *
5681 TTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTAAAAGGACTGTGTTTTTGGCTCCTAA
64 TTCATGCGAAACCAAAACATCAATATCAAGTATCCTAAT-GAGGGACAGTGTTTTTGG-TCCTAA
*
5746 TCTTGAAAAGAATGGAGATTATTACGAGAA
127 TCTAGAAAAGAATGGAGATTATTACGAGAA
* * * * * * ** ** *
5776 TTGATGCTTGTCTT-TTTTGTGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATT
1 -TCATGTTTGTCTTATTTAGAGGCA-GAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATT
* * ** * ** * * * *
5840 TCCAT-CCAAAAGAAAATCATCATTATCATTTCTCCTAATGA-GGA-A-TGTGCTTTGATGCTAA
64 TTCATGCGAAACCAAAA-CATCAATATCAAGTATCCTAATGAGGGACAGTGT-TTTTGGTCCTAA
* * * *
5901 TC-ACAAAATGAATGAAGATCATTACTAGAA
127 TCTAGAAAA-GAATGGAGATTATTACGAGAA
* ** * *
5931 TCCATGTTTGCCCCATTT-GAGGCATGAACTTAT-ACTT-TA-CAAAAATCAGTGGG-AA-AAAG
1 T-CATGTTTGTCTTATTTAGAGGCA-GAACTT-TGA-TTCTATCAAAAAT--GGGGGAAAGAAAA
** * * * *
5990 GCCTTTGATGCGAAACCAAAACATCAATATTGC-A-TATCCTAATGAGAAGACAATGTTTATGGT
60 GATTTTCATGCGAAACCAAAACATCAATA-T-CAAGTATCCTAATGAG-GGACAGTGTTTTTGGT
* * * * *
6053 GCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTAT
122 -CCTAATCTAGAAAAGAATGGAGATTATTACGAG-AA
*
6090 TCATGTTTGTCTTATTTAAGAGGCA-AACTTTGATTCTATCAAAAACGGGGGAAAGAAAAG-TTT
1 TCATGTTTGTCTTATTT-AGAGGCAGAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATTT
* * * * * *
6153 TCTTGCGATACCAAAGCATCAATGTCAAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAAT
65 TCATGCGAAACCAAAACATCAATATCAAGTATCCTAATG-AGGGACAGTGTTTTTGG-TCCTAAT
*
6218 CTTGAAAAGAATGGAGATTATTACGAGAA
128 CTAGAAAAGAATGGAGATTATTACGAGAA
* * * * ** ** *
6247 TCGATGCTTGTCTTTTTTAG-GGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATT
1 TC-ATGTTTGTCTTATTTAGAGGCA-GAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATT
* ** ** *
6311 TCCATGC-AAAAGAAAATCATCAATATCATTTCTCCTAATGAGG
64 TTCATGCGAAACCAAAA-CATCAATATCAAGTATCCTAATGAGG
6354 AATGTGCTTA
Statistics
Matches: 2878, Mismatches: 844, Indels: 611
0.66 0.19 0.14
Matches are distributed among these distances:
147 4 0.00
148 60 0.02
149 65 0.02
150 27 0.01
151 32 0.01
152 14 0.00
153 2 0.00
154 83 0.03
155 129 0.04
156 288 0.10
157 652 0.23
158 863 0.30
159 608 0.21
160 47 0.02
161 4 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (156 bp):
TCATGTTTGTCTTATTTAGAGGCAGAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGATTTT
CATGCGAAACCAAAACATCAATATCAAGTATCCTAATGAGGGACAGTGTTTTTGGTCCTAATCTA
GAAAAGAATGGAGATTATTACGAGAA
Found at i:7788 original size:158 final size:158
Alignment explanation
Indices: 7621--9530 Score: 504
Period size: 158 Copynumber: 12.1 Consensus size: 158
7611 GAAAAAGGCC
*
7621 TTTCATGCGAAACCAAAACATCAATATTGCA-TATCCTAATGAGAAGACAATGTTTATGGTGCCT
1 TTTCTTGCGAAACCAAAACATCAATATT-CATTATCCTAATGAGAAGACAATGTTTATGGTGCCT
*
7685 AATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCA-AACTTT
65 AATCCA-AAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAGAACTTT
*
7749 GATTCTATCAAAAACGGGGGAAAGAAAAG-T
129 GATTCTA-CAAAAATGGGGGAAAGAAAAGCT
* * * * * * * * *
7779 TTTCTTGCGATACCAAAGCATCAAT-GTCAAGTATTCTATTGA-AGGGACAGTGTTTTTGGCT-C
1 TTTCTTGCGAAACCAAAACATCAATATTC-ATTATCCTAATGAGA-AGACAATGTTTATGG-TGC
* ** * * * * *
7841 CCAATCTTGAAAAGAATGGAGATT-GTTACGAG-AATCGATGCTTGTCTT-TTTTAG-GGGATGA
63 CTAATC-CAAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGGCA-GA
* ** * *
7902 ACTTTGATTTTA-AGGAAAATAAGGCAAAGAAAAGAT
124 ACTTTGATTCTACA--AAAATGGGGGAAAGAAAAGCT
* ** * * * *
7938 TTTCGTGC-AAAAGAAAATCATCAATA-TCATTTTGCCTAACGAG--G--AATGTGCTTATAGTA
1 TTTCTTGCGAAACCAAAA-CATCAATATTCATTAT-CCTAATGAGAAGACAATGT--TTATGGTG
* * * * * * * **
7997 CCTAATCACAAAATGAATGAAGATCATTACT-AGAATCCAAGTTTGTCCCATTT--GAGGCATGA
62 CCTAATC-CAAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGGCA-GA
* * * *
8059 ACTTAGACTT-TACAAAAATTGGTGCG-AA-AAATGCC
124 ACTTTGA-TTCTACAAAAA-TGG-GGGAAAGAAAAGCT
* * * * * **
8094 TTTCTGGCGAAACTAAAGCATCAATA-TCGTGTATCCTGATGAGAAGA-ACATGTTTACAGTGCC
1 TTTCTTGCGAAACCAAAACATCAATATTCAT-TATCCTAATGAGAAGACA-ATGTTTATGGTGCC
* * * ** *
8157 TAATCCAGAAAAGAATATG-GATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGATA-AACA
64 TAATCCA-AAAAGAAT-GGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAGAACT
*
8220 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
127 TTGATTCTA-CAAAAATGGGGGAAAGAAAAGCT
* ** * * * * *
8253 TTTCATGCGACCCCAAAGCGTCAAT-GTCAAGTATCCTAATGAAGAA-A-ATATGTTT-TAGGTT
1 TTTCTTGCGAAACCAAAACATCAATATTC-ATTATCCTAATG-AGAAGACA-ATGTTTAT-GGTG
* * * * ****
8314 CCTAAACCTAAAAATG-ATGGTGATT-G-CTGCAAG-AATCGATGCCCATCTTATTTAAG-GG-A
62 CCTAATCC-AAAAA-GAATGGAGATTAGTATG--AGTATTC-ATGTTTGTCTTATTTAAGAGGCA
* * * * *
8373 TGAACTTTGATTTTA-AGGAAAATAGAGCAAAGAAAAGAT
122 -GAACTTTGATTCTACA--AAAATGGGGGAAAGAAAAGCT
** * ** * * *
8412 TTTGATG-TAAATGAAAATCATCAATA-TCATTTCTCCTAATGAG--GAGAATGTGCTTATAGTG
1 TTTCTTGCGAAACCAAAA-CATCAATATTCA-TTATCCTAATGAGAAGACAATGT--TTATGGTG
* * * * * * *
8473 CCTAATCACAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTT--GAGGCATGA
62 CCTAATC-CAAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGGCA-GA
* * * *
8535 ACATAGACTT-TACAAAAATTGGTGGG-AA-AAATGCA
124 ACTTTGA-TTCTACAAAAA-TGG-GGGAAAGAAAAGCT
* * * * *
8570 TTTCTTGCAAAACCAAAACATCAATA-TCGTGTATCCTAACGAGAAAACTAA-GTTTATAGTGCC
1 TTTCTTGCGAAACCAAAACATCAATATTCAT-TATCCTAATGAGAAGAC-AATGTTTATGGTGCC
** *
8633 TAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA-G-AGAAACT
64 TAATC-CAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAG-AACT
* *
8696 TTGATTCTATCAAAAACGGGAGAAAGAAAAG-T
127 TTGATTCTA-CAAAAATGGGGGAAAGAAAAGCT
* * * * * * * * *
8728 TTTCTTGCGACACCAAAGCATC-AT-TGTCATGTATCTTATTGA-AGGGCCGATATTTTTGGCT-
1 TTTCTTGCGAAACCAAAACATCAATAT-TCAT-TATCCTAATGAGA-AGACAATGTTTATGG-TG
* ** * * * * * *
8789 CCCAATCTTGAAAAGAATGCAGATTATTACGA-AAATCGATGCTTGTCTTATTTAAG-GG-ATGA
62 CCTAATC-CAAAAAGAATGGAGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGGCA-GA
* * * * * *
8851 ACTTTTATTTTACGGAAAATAGGGCAAAGAAAAGAT
124 ACTTTGATTCTAC-AAAAATGGGGGAAAGAAAAGCT
* * ** * * * * *
8887 TTCCATGC-AAAAGAAAATCACCAATA-TCATTTATCATAGTGAG--GAGAATGTGCTTATAGTG
1 TTTCTTGCGAAACCAAAA-CATCAATATTCA-TTATCCTAATGAGAAGACAATGT--TTATGGTG
* * * * * * * *
8948 CCTAATCACAAAATGAAT-GACGATCATTACT-AGAATCCATGTTTATCTCATTT--GAGGCACA
62 CCTAATC-CAAAAAGAATGGA-GATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGGCA-G
** ** ** *
9009 AACTTACACTT-TACAAAAATTAGTAGG-AA-AATTGCC
123 AACTTTGA-TTCTACAAAAA-T-GGGGGAAAGAAAAGCT
* ** * * * **
9045 TTTCTTGCTAAACCAAAACATCAATA-TCGCGTATGCTAATGAGAGGACAATGTTTATTGTTTCT
1 TTTCTTGCGAAACCAAAACATCAATATTC-ATTATCCTAATGAGAAGACAATGTTTATGGTGCCT
** * * * * *
9109 AATCTTGAAAAGAATGGGGATTAGTGTGACTATTCATGTTTGGCTTATTTAAGAGACA-AACTTT
65 AATC-CAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAGAACTTT
* ** *
9173 GATTCTATCAAAAAAGATGGAAAGAAAAGCA
129 GATTCTA-CAAAAATGGGGGAAAGAAAAGCT
** * * * * * * *
9204 TTTCCAGGGACACCAAAGCATTAAT-GTCATGTATCCTAA-GA-AAGGA-AATGTGTTTTAGGTT
1 TTTCTTGCGAAACCAAAACATCAATATTCAT-TATCCTAATGAGAA-GACAATGT-TTAT-GGTG
* * * * * *
9265 CCTAATCCTAAAAACAATGGAGATT-GTTACGA-CAATCGAGGCTTGTCTTATTTAAG-GG-ATG
62 CCTAATCC-AAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGGCA-G
* *
9326 AA-TTTAGACTT-TACAAAAATTGGTGGG---GAAATTGCC
123 AACTTT-GA-TTCTACAAAAA-TGG-GGGAAAGAAA-AGCT
** * **
9362 TTTCTTGCGAAACCAAAACATCAAT-TTCGCGTATCCTAATGAGACGATTATGTTTATGGTGCCT
1 TTTCTTGCGAAACCAAAACATCAATATTC-ATTATCCTAATGAGAAGACAATGTTTATGGTGCCT
* * * * *
9426 AATCCTAAAAGGAATGGGGATTAGTATGACTATTCATGTTTGTCTTTTTTAAGAGTCA-AACTTT
65 AATCC-AAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAGAACTTT
* * **
9490 GATTCCATCAAAAACGGTAGAAAGAAAAGCT
129 GATTCTA-CAAAAATGGGGGAAAGAAAAGCT
*
9521 TCTCTTGCGA
1 TTTCTTGCGA
9531 CACCTAATTT
Statistics
Matches: 1246, Mismatches: 349, Indels: 313
0.65 0.18 0.16
Matches are distributed among these distances:
155 4 0.00
156 39 0.03
157 127 0.10
158 590 0.47
159 421 0.34
160 62 0.05
161 2 0.00
162 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (158 bp):
TTTCTTGCGAAACCAAAACATCAATATTCATTATCCTAATGAGAAGACAATGTTTATGGTGCCTA
ATCCAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAGAACTTTGA
TTCTACAAAAATGGGGGAAAGAAAAGCT
Found at i:8999 original size:475 final size:472
Alignment explanation
Indices: 7271--9327 Score: 2576
Period size: 475 Copynumber: 4.3 Consensus size: 472
7261 GTCTTATGAC
* *
7271 AAACTTTGATTCTACCAAAAATGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTC
1 AAACTTTGATTCTATCAAAAA-CGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTC
*** ** *
7336 -TAGTATCCTATTGAAGGGACTGTGTTTTTGGCTCCTAATCTTGAAAAGAACAGAGATTATTACG
65 AT-GTATCCTATTGAAGGGAAAATGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTGTTACG
* * ** * *
7400 AGAATCGATGCTTGTCTTTTTTGTGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGCAAAG
129 AAAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
* * * *
7465 ATTTCCATCCAAAAGAAAAACATCATTACCATTTCTCCTAATGAGGAATGTGCTT-T-GATG-CT
194 ATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAG-TGCCT
* *
7527 AATCACAAAACGAATGAAGATCATTACTAGAATCCATGTTTGCCCCATTTGAGGCATGAACTTAG
258 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAG
* * * *
7592 ACTTTACAAAAATTAGTGGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATTGCATATCC
323 ACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCC
* * *
7657 TAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCAT
388 TAATGAGAAAACAATGTTTATAGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGACTATTCAT
7722 GTTTGTCTTATTTAAGAG-G
453 GTTTGTCTTATTTAAGAGAG
*
7741 CAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGATACCAAAGCATCAATGT
1 -AAACTTTGATTCTATCAAAAAC-GGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGT
* * * * *
7806 CAAGTATTCTATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACG
64 CATGTATCCTATTGAAGGGAAAATGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTGTTACG
* * *
7871 AGAATCGATGCTTGTCTTTTTTAGGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
129 AAAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
* * * *
7936 ATTTTCGTGCAAAAGAAAATCATCAATATCATTT-TGCCTAACGAGGAATGTGCTTATAGTACCT
194 ATTTCCATGCAAAAGAAAATCATCAATATCATTTCT-CCTAATGAGGAATGTGCTTATAGTGCCT
*
8000 AATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAG
258 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAG
* * * * * *
8065 ACTTTACAAAAATTGGTGCGAAAAATGCCTTTCTGGCGAAACTAAAGCATCAATATCGTGTATCC
323 ACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCC
* * ** *
8130 TGATGAGAAGAAC-ATGTTTACAGTGCCTAATCCAGAAAAGAATATGGATTAGTTTGACTATTCA
388 TAATGAGAA-AACAATGTTTATAGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGACTATTCA
*
8194 TGTTTGTCTTATTTAAGAGAT
452 TGTTTGTCTTATTTAAGAGAG
* * * * *
8215 AAACATTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCATGCGACCCCAAAGCGTCAATGT
1 AAACTTTGATTCTATCAAAAACGG-GGAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAATGT
* * * * * * * * * * *
8280 CAAGTATCCTAATGAA-GAAAATATGTTTTAGGTTCCTAAACCTAAAAATG-ATGGTGATTGCTG
64 CATGTATCCTATTGAAGGGAAA-ATGTTTTTGGCTCCTAATCTTGAAAA-GAATGGAGATTGTTA
***
8343 C-AAGAATCGATGCCCATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGAGCAAAGA
127 CGAA-AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAG-GCAAAGA
** * *
8406 AAAGATTTTGATGTAAATGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCTTATAG
190 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAG
*
8471 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAA
253 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAA
* * * * *
8536 CATAGACTTTACAAAAATTGGTGGGAAAAATGCATTTCTTGCAAAACCAAAACATCAATATCGTG
318 CTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCG
* ** *
8601 TATCCTAACGAGAAAACTAA-GTTTATAGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGT
383 TATCCTAATGAGAAAAC-AATGTTTATAGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGACT
8665 ATTCATGTTTGTCTTATTTAAGAGAG
447 ATTCATGTTTGTCTTATTTAAGAGAG
*
8691 AAACTTTGATTCTATCAAAAACGGGAGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCATTGTC
1 AAACTTTGATTCTATCAAAAACGGG-GAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTC
* *** * * * *
8756 ATGTATCTTATTGAAGGGCCGATATTTTTGGCTCCCAATCTTGAAAAGAATGCAGATTATTACGA
65 ATGTATCCTATTGAAGGGAAAATGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTGTTACGA
* * *
8821 AAATCGATGCTTGTCTTATTTAAGGGATGAACTTTTATTTTACGGAAAATAGGGCAAAGAAAAGA
130 AAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA
* * * *
8886 TTTCCATGCAAAAGAAAATCACCAATATCATTTATCATAGTGAGGAGAATGTGCTTATAGTGCCT
195 TTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCT
* * * ** *
8951 AATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCACAAACTTAC
258 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAG
* * * *
9016 ACTTTACAAAAATTAGTAGGAAAATTGCCTTTCTTGCTAAACCAAAACATCAATATCGCGTATGC
323 ACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCC
** * ** ** *
9081 TAATGAGAGGACAATGTTTATTGTTTCTAATCTTGAAAAGAATGGGGATTAGTGTGACTATTCAT
388 TAATGAGAAAACAATGTTTATAGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGACTATTCAT
* *
9146 GTTTGGCTTATTTAAGAGAC
453 GTTTGTCTTATTTAAGAGAG
* * * ** * *
9166 AAACTTTGATTCTATCAAAAAAGATGGAAAGAAAAGCATTTCCAGGGACACCAAAGCATTAATGT
1 AAACTTTGATTCTATCAAAAACG-GGGAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAATGT
* * * * * *
9231 CATGTATCCTA-AGAAAGG-AAATGTGTTTTAGGTTCCTAATCCTAAAAACAATGGAGATTGTTA
64 CATGTATCCTATTGAAGGGAAAATGT-TTTT-GGCTCCTAATCTTGAAAAGAATGGAGATTGTTA
* *
9294 CGACAATCGAGGCTTGTCTTATTTAAGGGATGAA
127 CGAAAATCGATGCTTGTCTTATTTAAGGGATGAA
9328 TTTAGACTTT
Statistics
Matches: 1377, Mismatches: 180, Indels: 53
0.86 0.11 0.03
Matches are distributed among these distances:
470 1 0.00
471 224 0.16
472 4 0.00
473 229 0.17
474 168 0.12
475 415 0.30
476 335 0.24
477 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (472 bp):
AAACTTTGATTCTATCAAAAACGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCA
TGTATCCTATTGAAGGGAAAATGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTGTTACGAA
AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
TTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAAT
CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACT
TTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAA
TGAGAAAACAATGTTTATAGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGACTATTCATGTT
TGTCTTATTTAAGAGAG
Found at i:11436 original size:473 final size:472
Alignment explanation
Indices: 10012--13667 Score: 4540
Period size: 473 Copynumber: 7.8 Consensus size: 472
10002 GCCTATCTTA
* * * *
10012 TTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATACT
1 TTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCT
* * * * *
10077 AGCAAG-GAGAACGTGCTTATAGTGCCTAATCAC-AAATTAATGACGATCAATACTAGAATCCAT
66 A--ATGAG-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * *
10140 GTTTGTCTCATTTAAGGCACGGACTTAGACTTTACAAAAATTGGTGAGAAAATTTCCTTTCTTGC
128 GTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* *
10205 GAAACCAAAACATCAATATC-CGTAACCTAATGAGAAGACTAGGTTTATGGTGCC-AATCCTGAA
193 GAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAA
* * *
10268 AAGAATGGAGATTTGTATGACTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCCATCA
258 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCCATCA
* * * * *
10333 AAAACAGTGGAAAGAAAAGCTTTTCTTGCGATATCAAAGCATCAATTTCATGTATCCTATTGAAA
322 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAG
* * * * *
10398 GGAATGTGCTTTTGGTACCCAATCTTGGAAACAATGGA-ATTTGTTGCGAGAATCAATGCTTGCC
387 GGAATGTGTTTTTGGTACCCAATCTT-GAAAGAATGGAGA-TTGTTACGAGAATCGATGCTTGTC
*
10462 TTTTTTAAGGGATGAACTTTGAT
450 TTATTTAAGGGATGAACTTTGAT
** * *
10485 TTTAAGGAAAAT-AGAGCAAAGAAAAGATTTTGATACAAAAGGAAATCATCAATATCATTTCTCC
1 TTTAAGGAAAATAAG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCC
*
10549 TAATGAGGAGAATGTGCTTATAGTGCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
65 TAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* ** *
10614 GTTTGTCTCATGTGAGGCATGAACAAAGACTTTACAAAAATTGGTGGGAAAAATGCTTTTCTTGC
128 GTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* *
10679 GAAATCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCTTGAA
193 GAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAA
* * ***
10744 AAGAAT---G----G---G--TATTCATGTTTGTCTTATTTAAAAGAGAAACTTTGATTTTGTCA
258 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCCATCA
* * *
10797 AAAACGGGGGAAAGAAAAG-TTTTCTTGCAACACCAAAGCATCATTGTCATGTATCCTATTGAAG
322 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAG
* * * *
10861 GGACA-GTGTTTTTGG-ATCCCAATCTTGAAGAGAGTGCAGATTGTTATGAGAATCGATGCTTGC
387 GGA-ATGTGTTTTTGGTA-CCCAATCTTGAA-AGAATGGAGATTGTTACGAGAATCGATGCTTGT
*
10924 CTTATTTAGGGGATGAACTTTGAT
449 CTTATTTAAGGGATGAACTTTGAT
* * *
10948 TTTATA-GAAAATAAGGCAAAGAAAAGATATCCGTGCAAAAGAAAATCATCAATATCATTTCTCT
1 TTTA-AGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCC
* * * *
11012 TAATGAGGAATATGCTTATTGTACCTAATCACAAAATGATTGAAGATCATTACTAGAATCCATGT
65 TAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * *
11077 TTGTCCCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGCGA
130 TTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGA
* * * * * * * *
11142 AACCAAAACTTCAATATCCCGTATCCTAAAGGGAAGACTATGTTTATAGTGCCCAATCCTAAAAA
195 AACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAA
* * * * *
11207 GAATGAGGG-TTAGTTTGACCATTCATGTTTGTGTTATTCT-TAGACAAA-TCATGATTCCATCA
260 GAATG-GGGATTAGTATGACTATTCATGTTTGTCTTATT-TAGAGACAAACT-TTGATTCCATCA
* *
11269 AAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATAGAAG
322 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAG
* * * *
11334 GGAATGTGTTTTTGGTACCTAATCTTGAAATGAATGTAGATTGTTACGAGAATCAATGCTTATCT
387 GGAATGTGTTTTTGGTACCCAATCTTGAAA-GAATGGAGATTGTTACGAGAATCGATGCTTGTCT
*
11399 TATTTAAGGGATGAACTTTAAT
451 TATTTAAGGGATGAACTTTGAT
* *
11421 TTTATGGAAAATAAGGCAAAGAAAAGATATCCATGCAAAAGAAAATCATCAATATCATTTCTCCT
1 TTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCT
* * * *
11486 AATGAGGAAGGTGCTTATAGTGCCTAATCAAAAAATAAATGAAGATCATTGCTAGAATCCATGTT
66 AATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * **** * *
11551 TGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAGTCAAAGGGAAAAATGCTTTTCTTTCGAA
131 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
* * * *
11616 ACCAAAACATCAATATCGCGTATCCTAATGAGAAGGCTAAGTTTATAGCGCCTAATCTTGAAAAG
196 ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAG
**
11681 AATGGGGATTAGTATGGGTATTCATGTTTGTCTTATTTGAGAGACAAACTTTGATT-CAGTCAAA
261 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCCA-TCAAA
* * * *
11745 AATGGAGGAAAGAAAAG-TTTTCTTGCGACACCAAAGCGTC-A----ATGTATCCTATTGATGGG
324 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGG
* * * *
11804 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTA
389 AATGTGTTTTTGGTACCCAATCTTG-AAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTA
* *
11869 TTTAAGAGATAAACTTTGAT
453 TTTAAGGGATGAACTTTGAT
* * * *
11889 TTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGCAAAA-CAAATCATCAATATCATTTATCC
1 TTTAAGGAAAATAA-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCC
*
11953 TAATGAGGAAATTGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCTAT
65 TAATGAGG-AA-TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* ** * * *
12018 GATTGTCTCATTTGACCCATTAACTTAGACTTTACAAAAATTAGT-GGAAAAATGCCTTTCTTAC
128 GTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* * *
12082 GAAACCAAGACATAAATATCGCGTATCCTAATAAGAAGACTAAGTTTATGGTGCCTAATCCTGAA
193 GAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAA
* *
12147 AGGAATGGGGATTAGTATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCA
258 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCCATCA
** * * *
12212 AAAATTGTGGAAGGAAAAGCTTTTCATGCGACACCAAAGCA-CCA--T--TGTATCCTATTGATA
322 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGA-A
* * *
12272 -GGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTC
386 GGGAATGTGTTTTTGGTACCCAATCTTG-AAAGAATGGAGATTGTTACGAGAATCGATGCTTGTC
*
12336 TTATTTAAGGGATGAGCTTTGAT
450 TTATTTAAGGGATGAACTTTGAT
* * * *
12359 TATAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
1 TTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCT
* * * * * * *
12424 AGTGAGGAGAATGCGCTCATAGCGCCTGATCACAAAATTAATGACA-ATCACTACTAGAATCCAT
66 AATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGA-AGATCATTACTAGAATCCAT
* * *
12488 GTTTGTTTCA-TTGAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAATTGCCTTTCTTA
128 GTTTGTCTCATTTG-AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG
* * * * *
12552 CAAAACCAAAACATCAATATCACGTACCCTAATGAGAAGACTATGTTTATTGTGCCTAATCCTGA
192 CGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGA
* * *
12617 AAAGAATGGGGATTTGTATGACTATTCATGTTTGTCTTAATTAAGAGACAAACTTTAATTCCATC
257 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTT-ATTTAGAGACAAACTTTGATTCCATC
* * *
12682 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATTAATGTCATGTATCCTATTGAA
321 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAA
* * ** *
12747 GGGAATGTGCTTTTGGAACCCAATCTTGGAAAGAATGGAGATTGTTGTGAGAATCGATGCTTATC
386 GGGAATGTGTTTTTGGTACCCAATCTT-GAAAGAATGGAGATTGTTACGAGAATCGATGCTTGT-
12812 CTT-TTTAAGGGATGAACTTTGAT
449 CTTATTTAAGGGATGAACTTTGAT
* ** * * *
12835 TTTAAGG-AAAT-AGAGCAAAGGAAAGATTTTGAT-AAAAAGAAAATCATCCATATCATTGCTCC
1 TTTAAGGAAAATAAG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCC
* *
12897 TAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAATGAAGATCAATACTAGAATCCAT
65 TAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
*
12962 GTTTG-------T----C-T---C----A--TTACAAAAATTGGTGGG-AAAATGCTTTTCTTGC
128 GTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
*
13005 GAAACCAAAACAGT-AATATCACGTATCCTAATGAGAAGACTAAAGTTTATGGTGCCTAATCCTG
193 GAAACCAAAACA-TCAATATCGCGTATCCTAATGAGAAGACT-AAGTTTATGGTGCCTAATCCTG
* * *
13069 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAT
256 AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCCAT
* * * *
13134 CAAAAACGGGGGAAAGAAAAG-TTTTCTTGCGATACCAAAGCATCAATGTCAAGTATTCTATTGA
320 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGA
13198 AGGGACA-GTGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTT
385 AGGGA-ATGTGTTTTTGG-TACCCAATCTTG-AAAGAATGGAGATTGTTACGAGAATCGATGCTT
* *
13261 GTCTTTTTTAGGGGATGAACTTTGAT
447 GTCTTATTTAAGGGATGAACTTTGAT
* *
13287 TTTAAGGAAAATAAGGCAAAGAAAAGGTTTCCATGCAAAAAAAAATCATCAATATCATTTCTCCT
1 TTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCT
*
13352 AATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCATGTT
66 AATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * *
13417 TGCCTCATTTGAGGCATGAACTTAGATTTTACAAAAATTGGTGGGAAAAAGGCCTTTCATGCGAA
131 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
* * * * * * * *
13482 ACCAAAACATCAATATTGCGTATCCTTATGAGAAAACTATGTTTATGATGCTTAATCTTCAAAAG
196 ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAG
* *
13547 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCACCAAAA
261 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCCATCAAAA
* *
13612 ACGGTGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTA
325 ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
13668 ATGAGAAGAT
Statistics
Matches: 2764, Mismatches: 323, Indels: 191
0.84 0.10 0.06
Matches are distributed among these distances:
451 4 0.00
452 232 0.08
453 133 0.05
454 33 0.01
455 1 0.00
459 2 0.00
461 170 0.06
462 6 0.00
463 167 0.06
464 61 0.02
465 1 0.00
466 1 0.00
467 1 0.00
468 131 0.05
469 206 0.07
470 317 0.11
471 177 0.06
472 44 0.02
473 609 0.22
474 304 0.11
475 55 0.02
476 105 0.04
477 4 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (472 bp):
TTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCT
AATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAG
AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAGAGACAAACTTTGATTCCATCAAAAA
CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAA
TGTGTTTTTGGTACCCAATCTTGAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
AAGGGATGAACTTTGAT
Found at i:12335 original size:154 final size:155
Alignment explanation
Indices: 11656--12344 Score: 360
Period size: 159 Copynumber: 4.4 Consensus size: 155
11646 AGAAGGCTAA
* * * * * * * * *
11656 GTTTATAGCGCCTAATCTTGAAAAGAATGGGGA-TTAGTATGGGTATTC-ATGTTTGTCTTATTT
1 GTTTATGGTGCCTAATCTTGAAAAGAATGGAGACTAATTACGAG-AATCGATGCTTGTCTTATTT
* * * * * *
11719 GAGAGACAAACTTTGATTCAGTCAAAAATGGAGGAAAGAAAAG-TTTTCTTGCGACACCAAAGCG
65 AAGAGACAAACTTTGATTCA-TCAAAAATTGTGGAAAGAAAAGCTTTTCATGCGAAACCAAAGCA
* * *
11783 T-CAATGTATCCTATTGATGGGAATGT
129 TCCATTGTATCCTAATGATAGGAATGT
* * * *
11809 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT-ATTACAAGAATCGATGCTTGTCTTATTTA
1 GTTTATGGTGCCTAATCTTGAAAAGAATGGAGACTAATTACGAGAATCGATGCTTGTCTTATTTA
* * ** * * * * * *
11873 AGAGATAAACTTTGATTTTATGGAAAATAAG-GGCAAAGAAAAGATTTCCAAGC-AAAACAAATC
66 AGAGACAAACTTTGA-TTCATCAAAAAT-TGTGG-AAAGAAAAGCTTTTCATGCGAAACCAAAGC
11936 ATCAATATCATT-TATCCTAATG--AGGAAATTGT
128 ATC-----CATTGTATCCTAATGATAGG-AA-TGT
* * ** * * * * * *
11968 GCTTATAGTGCCTAATC-ACAAAATGAATGAAGA-TCATTACTAGAATCTATGATTGTCTCATTT
1 GTTTATGGTGCCTAATCTTGAAAA-GAATGGAGACTAATTACGAGAATCGATGCTTGTCTTATTT
** * * * * * *
12031 --GACCCATTAACTTAGACTTTA-CAAAAATTAGTGG-AA-AAATGCCTTTCTTACGAAACC-AA
65 AAGAGACA--AACTTTGA-TTCATCAAAAATT-GTGGAAAGAAAAGCTTTTCATGCGAAACCAAA
** * * * * **
12090 GACATAAATATCGCGTATCCTAATAAGAAGACTAA
126 G-CATCCAT-T---GTATCCTAATGATAGGAATGT
* * * * * * * *
12125 GTTTATGGTGCCTAATCCTGAAAGGAATGGGGA-TTAGTATGACAATTC-ATGTTTGTCTTATTT
1 GTTTATGGTGCCTAATCTTGAAAAGAATGGAGACTAATTACGAGAA-TCGATGCTTGTCTTATTT
* *
12188 AAGAGACAAACTTTGATTCCATCAAAAATTGTGGAAGGAAAAGCTTTTCATGCGACACCAAAGCA
65 AAGAGACAAACTTTGATT-CATCAAAAATTGTGGAAAGAAAAGCTTTTCATGCGAAACCAAAGCA
*
12253 -CCATTGTATCCTATTGATAGGAATGT
129 TCCATTGTATCCTAATGATAGGAATGT
* * *
12279 GTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACT-GTTACGAGAATCGATGCTTGTCTTATTTA
1 GTTTATGGTGCCTAATCTTGAAAAGAATGGAGACTAATTACGAGAATCGATGCTTGTCTTATTTA
12343 AG
66 AG
12345 GGATGAGCTT
Statistics
Matches: 389, Mismatches: 107, Indels: 79
0.68 0.19 0.14
Matches are distributed among these distances:
152 5 0.01
153 70 0.18
154 87 0.22
155 7 0.02
156 12 0.03
157 79 0.20
158 30 0.08
159 93 0.24
160 6 0.02
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (155 bp):
GTTTATGGTGCCTAATCTTGAAAAGAATGGAGACTAATTACGAGAATCGATGCTTGTCTTATTTA
AGAGACAAACTTTGATTCATCAAAAATTGTGGAAAGAAAAGCTTTTCATGCGAAACCAAAGCATC
CATTGTATCCTAATGATAGGAATGT
Found at i:13664 original size:159 final size:157
Alignment explanation
Indices: 12996--24030 Score: 1694
Period size: 159 Copynumber: 70.2 Consensus size: 157
12986 GGGAAAATGC
* * ** *
12996 TTTTCTTGCGAAACCAAAACAGT-AATATCACGTATCCTAATGAGAAGACTAAAGTTTATGGTGC
1 TTTTCTTGCGACACCAAAGCA-TCAATATCGTGTATCCTAATGAGAAGACT-ATGTTTATGGTGC
* * *
13060 CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTT
64 CTAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTT
* * *
13125 TGATTCTATCAAAAA-CGGGGGAAAGAAAAG
127 TGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * ** * * * *
13155 TTTTCTTGCGATACCAAAGCATCAATGTCAAGTATTCTATTGA-AGGGAC-AGTGTTTTTGGCT-
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGACTA-TGTTTATGG-TG
* * * * * * * * *** **
13217 CCCAATCTTGAAAAGAATGGAGATT-GTTACGAGAATCGATGCTTGTCTTTTTTAGGGGATGAAC
63 CCTAATC-TAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAAAAGACAAAC
** *** * *
13281 TTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGG
125 TTTGATTCCATCAAAAATAGGTGGAAAGAAAA-G
* * * * ** * * * * * * * *
13314 TTTCCATGCAAAAAAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATAGTGCCT
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
** * * * * * * * * *
13377 AATC-ACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGCCTCATTT--GAGGCATGAACT
66 AATCTA-AAAA-GAATGGGGATTAGTA-TGATATTCATGTTTGTCTTATTTAAAAGACA--AACT
* ** * * *
13439 TAGATTTTA-CAAAAATTGGTGGGAA-AAAGG
126 TTGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * * * * * *
13469 CCTTTCATGCGAAACCAAAACATCAATATTGCGTATCCTTATGAGAAAACTATGTTTATGATGCT
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
*
13534 TAATCTTCAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTT
65 TAATC-TAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* * *
13599 GATTCCACCAAAAA-CGGTGGAAAGGAAAG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
* * *
13628 CTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGATTAAGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * * * *
13693 TAATGCTAAAAAGAATGGGGATTAGTTTGAGTATTCAAGTTCGTCTTATTTGAGAGGCAAGCTTT
65 TAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
*
13758 GATTCTATCAAAAATAGG-GGAAAGAAAAG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * *** * ** * *
13787 TTTTCTTACAACACCAAAGCATCAATGTTAAGTATCCT-ATTA-AAGGGTCAGTGTTTTTGGCTT
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACT-A-TGTTTATGG-TG
* * * * * * * * **
13850 CC-AGTCTTGAAACGAATGGAGATT-GTTATGAGAATCTATGCTTGTCTT-TTTAAGGAGATGAA
63 CCTAATC-TAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAA-AAGACAAA
** * * *
13912 CTTTGATTTTATGAAAAATAAG-GCAAAGAAAAG
124 CTTTGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * ** * * * * * * * *
13945 ATTTCAATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATAGTGCC
1 TTTTC-TTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
** * * * * * ** *
14008 TAATC-ACAAAATGAATGAAGATCATTACTAGA-ATCCAGGTTTATCCCATTT--AAGGCATGAA
65 TAATCTA-AAAA-GAATGGGGATTAGTA-T-GATATTCATGTTTGTCTTATTTAAAAGACA--AA
* * * *
14069 CTTAGACTT-TA-CAAAAATTGGTGGGAAA-AAAGG
124 CTTTGA-TTCCATCAAAAATAGGT-GGAAAGAAAAG
* * * * * ** **
14102 CCTTTCTTGCGAAATCAAAACATCAGTATCGCATATCCTAATGAGAAGACTATGTTTATGGCACC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * *
14167 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCAAGTTTGTTTTATTTTAGAGACAAACTTT
65 TAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* *
14232 GATTCCATCAAAAA-CGGTGGAAAGGAAAG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
* * ** * *
14261 CTTTTCTTGTGACATCAAAGCATCAAGGTCGTGTATCCTAATAAGAAGACTAAGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * *
14326 TAATCATAAAAAAAATGGGGATAAGTATGAGTATTCATGTTTTTCTTATTTAAAAGACAAACTTT
65 TAATC-TAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* *
14391 GATTCCATAAAAAAT-GGGGGAAAGAAAAG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
** * *** * * *** *
14420 TTTTCTTGCGACACCAAAGCAAAAATGTTAAGTATCCTATTGATGGA-ACGGGGTTTTTGGCT-C
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGA-GAAGACTATGTTTATGG-TGC
* * * * * * * * ** ***
14483 CCAATCTTGAAAAGAATGGAGATT-GTTACGAGAATCGATGCTTGTCTTATTTTAGGGTTGAACT
64 CTAATC-TAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAAAAGACAAACT
*** ** * *
14547 TTGATTTTGTGGAAAATAAG-GCAAAGAAAAG
126 TTGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * ** * * * * * * * * ** * *
14578 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAGTTAGGAGAATGTGCCTATAGCGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * ** * * * * * * * *
14643 TAATC-ACAAAATTATTGATGATCATTTCTAGA-ATCCATGTTTGTCTCATTTAAGACACGAACT
65 TAATCTA-AAAA-GAATGGGGATTA-GTAT-GATATTCATGTTTGTCTTATTTAAAAGACAAACT
* * * **
14706 TAGACTT-TA-CAAAAATTA-GTGGGAA-AATTG
126 TTGA-TTCCATCAAAAA-TAGGTGGAAAGAAAAG
* * ** * *
14736 CCTTTT-TTGC-AAATCCAAAACATCAATATCACGTATCCTAATGGGAAGACTTTGTTTATGGTG
1 --TTTTCTTGCGACA-CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* * * * *
14799 CCTAATCTTGAAAAGAATGGGGATTTGTATGGCTCTTCATGTTTGTCTTATTTAAGAGACAAACT
63 CCTAATC-TAAAAAGAATGGGGATTAGTAT-GATATTCATGTTTGTCTTATTTAAAAGACAAACT
* * *
14864 TTGATTTCTTCAAAAA-CGGTGGAAAGAAAAG
126 TTGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * *
14895 CTTTTCTTGCGACACCAAAGCAACAA-AGTCATGTATCCTATTGA-AAGGAATGTGCTTT-TGGT
1 -TTTTCTTGCGACACCAAAGCATCAATA-TCGTGTATCCTAATGAGAA-GACTATG-TTTATGGT
* * ** ** * * * * * * * **
14957 ACCCAATCTTGGAAAGGGTGGAGATT-GT-TGCGAGAATTGAGGCTTGTCTTTTTTAAAGGATGA
62 GCCTAATC-TAAAAAGAATGGGGATTAGTAT--GA-TATTCATGTTTGTCTTATTTAAAAGACAA
** *** * *
15020 ACTTTGATTTTAAGGAAAATA-GAGCAAAGAAAAG
123 ACTTTGATTCCATCAAAAATAGGTGGAAAGAAAAG
** * * ** * * * * * * * * **
15054 ATTTTGATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCTTATAATGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
** * * * * ** *
15119 TAAT-TACAAAATGAATGAAGATCATTACTAGA-ATCCATGTTTATCTTATTT--GCGGCAAGAA
65 TAATCTA-AAAA-GAATGGGGATTAGTA-T-GATATTCATGTTTGTCTTATTTAAAAGAC-A-AA
* ** *
15180 C-TT-AGTCTTTACAAAAATTA-GTAGG-AA-AAATG
124 CTTTGATTCCAT-CAAAAA-TAGGT-GGAAAGAAAAG
* * * * * *
15212 CTTTTCTTACGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGATTAAGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * *
15277 TAATCATGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
65 TAATC-TAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* * * *
15342 GATTCGATCATAAA-CGG-GGAAAAAAAAG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
** * * * * *
15370 TTTTCTTGCGACACCAAAGCATCAACGTCATGTATCCTATTGA-AGGGAC-AGTGTTTTTGACT-
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGACTA-TGTTTATG-GTG
* * * ** * * * * * *** **
15432 CCCACTCTTGAAAAGAATGGACATT-GTTACGAGAAGTGATGCTTGTCTTATTTAGGGGATGAAC
63 CCTAATC-TAAAAAGAATGGGGATTAG-TATGA-TATTCATGTTTGTCTTATTTAAAAGACAAAC
* ** * *
15496 TTTGACTT-TATGGAAAATAAG-GCAAAGAAAAGG
125 TTTGA-TTCCATCAAAAATAGGTGGAAAGAAAA-G
* * * ** * * * * * * * * *
15529 TTTCCATGC-AAAAGAAAACTATCAATATCATTTCTCCTAATGAG--GAATGTGCTTGTAGTGCC
1 TTTTCTTGCGACACCAAAGC-ATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * * *
15591 TAATC-ACAAAATGAATGAAGGTCATTACTA-GA-ATCCATGTTTGTCTCATTT--GAGGCATGA
65 TAATCTA-AAAA-GAATG--GG-GATTAGTATGATATTCATGTTTGTCTTATTTAAAAGACA--A
* * * * * *
15651 AATTAGACTT-TA-CAAAAATTGGTGGGAA-AAAGG
123 ACTTTGA-TTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * * * * *
15684 CCTTTCATGTGAAACCAAAACATCAATATTGCGTATCCTAATGAGAAAACTATGTTTATGATGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* *
15749 TAATCTTTAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACATT
65 TAATC-TAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* * *
15814 GATTCCACCAAAAAT-GGTGGAATGGAAAG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * *
15843 CTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGATTAAGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
** * * * * *
15908 TAATCCTGGAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAGCTTC
65 TAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* * *
15973 GATTCTATCAAAAA-CGGGGGAAAGAAAAG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * *
16002 TTTTCTTGCAACACCAAAGCGTCAATGT--TAGTATCCTATTGA-AGGGAC-ATTGTCTT-TGGC
1 TTTTCTTGCGACACCAAAGCATCAATATCGT-GTATCCTAATGAGA-AGACTA-TGT-TTATGGT
* * * * * * * * ** **
16062 GTCC-AATGTTGAAATGAATGGAGATT-GTTACGAGAATCGATGCTTGTCTT-TTTAAGGGGATG
62 G-CCTAAT-CTAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAA-AAGACA
* ** ** * *
16124 ACCTTTGATTTTATGGAAAATAAG-GCAAAGAAAAG
122 AACTTTGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * ** * * * * * * * * * *
16159 ATTTCAATGCAAAAGAAAATCATCAATATCATTTCTTCTTATGAG--GAATGTGCTTATAGTGCC
1 TTTTC-TTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* ** * * * * * ** *
16222 TAATC-ACGAAATGAATGAAGATCATTACTAGA-ATCCAGGTTTATCCCATTT--AAGGCATGAA
65 TAATCTA--AAAAGAATGGGGATTAGTA-T-GATATTCATGTTTGTCTTATTTAAAAGACA--AA
* * * * *
16283 CTTAGACTT--TTCAAAAATTGGTGGGAA-AAAGG
124 CTTTGA-TTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * * *
16315 CCTTTCTTGCGAAACCAAAACATCAATATCATATATCCTAATGATAAGGCTATGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * *
16380 TAATCATGAAAAGAATGGGGATTAGAATGACTATTCATGTTTGTTTTATTTAAGAGACAAACTTT
65 TAATC-TAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* *
16445 GATTCCATCAAAAA-CGGTGGAAAGGAAAG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
* ** * * * *
16474 CTTTTCTTGTGACACCAAAGCATCAAGGTCGTGTATCCTAATAATAAGACTAAGTTCATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * *
16539 TAATCCTAAAAAAAATAGGGG-TAACTATGAGTATTCATGTTTGTCTTATTCAAAAGACAAACTT
65 TAAT-CTAAAAAGAAT-GGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTT
** ** * *
16603 TGATTCC-TTTAAAAGCGGGGGAAGGAAAAG
127 TGATTCCATCAAAAATAGGTGGAAAGAAAAG
* ** * * * *
16633 TTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGATG-GGAC-AGGGTTTTTGGCT-
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGA-GAAGACTA-TGTTTATGG-TG
* * * * * *** *
16695 CAC-AATCTTGAAAAGAATGGAGATT-GT-TGCGAGAATCGATGCTTGTCTTATTTAGGGGACGA
63 C-CTAATC-TAAAAAGAATGGGGATTAGTAT--GATATTC-ATGTTTGTCTTATTTAAAAGACAA
** * * *
16757 ACTTTGATTTTATGAAAAATAAG-GCAAAGAAAAG
123 ACTTTGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * ** * * * * * * * ** *
16791 ATTTCATGCAAAAGAAAATCATCAATATCATTTATCC-ATGTGAGGAGAATGTGCCTATAGTGCC
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTA-ATGAGAAGACTATGTTTATGGTGCC
* * ** * * * * *
16855 CAATC-ACAAAATTAATGACGATCATTACTAGA-ATCCATGTTTGTCTTATTT-AAGGTACGAAC
65 TAATCTA-AAAA-GAATGGGGATTAGTA-T-GATATTCATGTTTGTCTTATTTAAAAG-ACAAAC
* * * * **
16917 TTAGACTT-TA-CAGAAATTA-GTGGGAA-AATTG
125 TTTGA-TTCCATCA-AAAATAGGTGGAAAGAAAAG
* * * * *
16948 CCTTTCTTGC-AAATCCAAAACATCAATATCGCGTTTCCTAATGAGAAGACTATGTTTATGGTGC
1 -TTTTCTTGCGACA-CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * * * * *
17012 CTAATCTTGAAAAGAATGGGGATTTGTATGGCTCTTCATGTTTGTCATATTTAAGAGACAAACTT
64 CTAATC-TAAAAAGAATGGGGATTAGTAT-GATATTCATGTTTGTCTTATTTAAAAGACAAACTT
* * * *
17077 TTATTTCATCAAAAA-CGGTGGAAAAAAAAG
127 TGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * * * * *
17107 CTTTTCTTGCAACACCAAAGCAACAATGTCATGTATCCTATTGA-AGGGAATGTGCTTT-TGGTA
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGACTATG-TTTATGGTG
* ** * * * * * * * * **
17170 CCCAATCTTGGAAAGAGTGGAGATT-GT-TGCAAGAATTGATGCTTGTCTTTTTTACAGGATGAA
63 CCTAATC-TAAAAAGAATGGGGATTAGTATG--A-TATTCATGTTTGTCTTATTTAAAAGACAAA
* ** *** * *
17233 GTTTGATTTTAAGGAAAATA-GAGCAAAGAAAAG
124 CTTTGATTCCATCAAAAATAGGTGGAAAGAAAAG
** * * * ** * * * * * * * * **
17266 ATTTTGATACAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCTTATAATGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
*** * * * ** * *
17331 TAATC-ACAAAATGAATAAAGATCATTACTAGA-ATCCATGTTTGTCCCATTT--GAGGCATGAA
65 TAATCTA-AAAA-GAATGGGGATTAGTA-T-GATATTCATGTTTGTCTTATTTAAAAGACA--AA
* * *
17392 CTTAGACTT-TA-CAAAAAT---TGGAAGGAAAAAGG
124 CTTTGA-TTCCATCAAAAATAGGTGGAAAG-AAAA-G
* * * * * * * * **
17424 CCTTTCATGCAAAACCAAAACATCAATATTGCGTATCCTAATGAGAAGACTATG-TTATGATATC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * *
17488 T--TC--AAAAGAATGGGGATTGGTACGACAATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
65 TAATCTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
* * *
17549 AGTCCACCAAAAAT-GGTGGAAAGGAAAG
129 ATTCCATCAAAAATAGGTGGAAAGAAAAG
* *
17577 CTTTTCTTGCGACACCAAAG---------C----AT-C-AATGAGAAGATTAAGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * ** *
17627 TAATCCTAAAAAGAATGGGGATAAGTTTGAGTATTCATGTTTGTCTTATTTAACAGGTAAGCTTT
65 TAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* *
17692 GATTCTATCAAAAAT-GGGGGAAA-AAAAG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
* ** *
17720 TTTTCTTGCAACACCAAAGCATC-A-A------A----AATG-GTGGAC-AGTGTTTTTGGCAT-
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTA-TGTTTATGG--TG
* * * * * ** * ** **
17770 CC-AATCTTGAAATGAATGGAGATT-GTTACGAGAACCGATGCTTGTCTT-TTTAAGGGGATGAA
63 CCTAATC-TAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAA-AAGACAAA
** * *
17832 CTTTGATTTTAT-AGAAAATAAGT-CAAAGAGAAAG
124 CTTTGATTCCATCA-AAAATAGGTGGAAAGA-AAAG
* * * * ** * * * * * * * * *
17866 ATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT-A-AGGAATCTGCTTATAGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
** * * *** * * *
17929 TAATC-ACAAAATGAATGAAG-TTATTACTAGA-ATCCATGTTTGTCCCGTTT-GAGGCACGAAC
65 TAATCTA-AAAA-GAATGGGGATTAGTA-T-GATATTCATGTTTGTCTTATTTAAAAG-ACAAAC
* * * * * *
17990 TTAGACTT-TA-CAAAAATTGGAGGGAA-AAAGG
125 TTTGA-TTCCATCAAAAATAGGTGGAAAGAAAAG
* * * ** * *
18021 CCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAAGAGAAGACTATGTTTATGGAGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * *
18086 TAATCCAAAAAAGAATGGGGATTAATATGACTATTCATATTTGTCTTATTTAAGAGACAAACTTT
65 TAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* *
18151 GATTTCATCAAAAAT-GGTGAAAATG-AAAG
128 GATTCCATCAAAAATAGGTGGAAA-GAAAAG
* * * *
18180 CTTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGAAGACTAAGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * *
18245 TAATCCTGAAAAGATTGGGGATAAGTATGAGTATTCATGTTTGGCTTATTT--AAGAGAAACTTT
65 TAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
** * *
18308 GATTCTGTCAAAAACAAG-GGAAAGAAAAG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
* ** * * *
18337 TTTTCTTGCGACACCAAAGCATCAATTTCAAGTATCCT-ATTA-AAGGGACAATGTTTTTGGCT-
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAA--GACTATGTTTATGG-TG
* * * * * * *** **
18399 CCTAATCTTGAAAAGAATGGAGATT-GTTATGAGAATCGATGCTTGTCATATTTAGGGGATGAAC
63 CCTAATC-TAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAAAAGACAAAC
* ** * *
18463 TTTGATTTTC-TGGAAAA-CGAG-GCAAAGAAAAG
125 TTTGA-TTCCATCAAAAATAG-GTGGAAAGAAAAG
* * * * ** * * * * * * * * * *
18495 ATTTCCATGCAAAAGAAAATCATCAATATCTTTTATCCTAGTGAGGAGAATGTGCTTATAGTGTC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * * * * * *
18560 AAATC-ACAAAATTAAT-GGCAATCGTTACTAGA-ATCCATGTTTGTCTCATTT-AAGGCACGAA
65 TAATCTA-AAAA-GAATGGGGATTAG-TA-T-GATATTCATGTTTGTCTTATTTAAAAG-ACAAA
* * * * * * * *
18621 CTTAGACTCTA-CAAAGATTGGAAGGAAA-AAGAC
124 CTTTGATTCCATCAAAAATAGG-TGGAAAGAAAAG
* * * * * * * * *
18654 CTTTCATGCAAAACCAAAACATCAATATTGCGTATCCTAATGAGAAGACTATG-TTATGAT-ACT
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
*
18717 --TC--AAAAGAATGGGGATTAGTACGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGA
66 AATCTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTTGA
* * *
18778 TTCCACCAAAAA-CGGTGGAAAGGAAAG
130 TTCCATCAAAAATAGGTGGAAAGAAAAG
* * * *
18805 CTTTTCTTGCGATACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGATTAAGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * *
18870 TAATCCTGAAAGGAATGGGGATTAATATGACTATTCATGTTTGTCTTATTTAAGAGA-AAACTTT
65 TAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* * *
18934 GATTCCATCAAAAA-CGGTGGAAGGAAAGG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
* ** * * * * * *
18963 CTTTTCATGCGACACTGAAGTATC-A-A-C--GTATCCTATTGATG--GAATGTGTTTTTGGTTC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGA-GAAGACTATGTTTATGGTGC
* * * ** * * * ** **
19021 CCAATCTTGAAAAGAATGGTGATT-GTTACAAGAATCGATGTCTGTCTTATTTAAGGGATGAACG
64 CTAATC-TAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAAAAGACAAAC-
** *
19085 TTT-ATTTTA-CGAAAAATAGG-GCAAAGAAAAG
125 TTTGATTCCATC-AAAAATAGGTGGAAAGAAAAG
* * * * ** * * * * * * * * *
19116 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATGGCGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* ** * * * *
19181 TAATC-ACAGAATGAATGAAGATCATTACTAGA-A-TCTATGTTTGTCTCATTT--AAGGCATGA
65 TAATCTA-A-AAAGAATGGGGATTAGTA-T-GATATTC-ATGTTTGTCTTATTTAAAAGACA--A
* * * *
19241 ACTTAGACTT-TA-CAAAAA-ATGGTGGGAA-AAAGG
123 ACTTTGA-TTCCATCAAAAATA-GGTGGAAAGAAAAG
* * * * * * *
19274 CCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGGGAAGACTATGTTTATGGTGCT
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
** * * * *
19339 TAATCCTAAAAAGAATGGGGGCTAGTTTGACCATTCATGTCTGTCTTATTCT--TAGACAAACTT
65 TAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATT-TAAAAGACAAACTT
* *
19402 TGATTCCTTCAAAAA-CGGTGGAAAGAAAAG
127 TGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * * *
19432 CTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCT-AT-AGAAGGGATTGTGTTTTTGGTA
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAA--GACTATGTTTATGGTG
* * ** * * * ** **
19495 CCAAATCTTGAAAAGAATGTAGATT-GTTATGAGAATTTATGCTTGTCTTATTTAAGGGATGAAC
63 CCTAATC-TAAAAAGAATGGGGATTAG-TATGA-TATTCATGTTTGTCTTATTTAAAAGACAAAC
** ***
19559 TTTGATTTTAGGGAAAATAAGGT--AAAGAAAA-
125 TTTGATTCCATCAAAAAT-AGGTGGAAAGAAAAG
* * * ** * * * * * * * *
19590 TATTTCCGTGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATAGTGC
1 T-TTT-CTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
*** * * * ** * *
19653 CTAATC-ACAAAATGAATGAAAATCATTGCTA-GA-ATCCAAGTTTGTCCCATTT--GAGGCATG
64 CTAATCTA-AAAA-GAATGGGGAT--TAG-TATGATATTCATGTTTGTCTTATTTAAAAGACA--
* * * * *
19713 AACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAATG
122 AACTTTGA-TTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * ** * *
19747 CCTTTCTTGCGAAACCAAAACATCAATATCGTGCATTTTAAAGAGAATACTATGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * *
19812 TAATACTGAAAAA-AATGGGGGTTAGTTTGACCATTCTTGTTTGTCTTATTTAAGAGACAAACTT
65 TAAT-CT-AAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTT
* * *
19876 TGAATCCGTCAAAAACA-GTGGAAAGAAAAG
127 TGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * * * * * *
19906 CTTTTCTTGCAATACCAAATCATCAATGTCATGTATCCTATTGA-AGGGAATGTGTTTTTGGTAG
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGACTATGTTTATGGT-G
* * ** * * * * *** **
19970 -CAAATCTTGAAAAGAATGTAGATT-GTTACGAGAATTGATGCTTGTCTTATTTAGGGGATGAAC
63 CCTAATC-TAAAAAGAATGGGGATTAG-TATGA-TATTCATGTTTGTCTTATTTAAAAGACAAAC
*** ** * * *
20033 TTTGATTTTTTGGAAAGTAAG-GCAAAGAAAAG
125 TTTGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * ** * * * * * * * * *
20065 ATTTCCATGCAATAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATAGCGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* *** * * * *
20128 TAAAGAC-AAAATTATTGAA-GATCATTAGTA-GA-ATCCATGTTTGTCTCA-TT-AGAGGCATG
65 T-AA-TCTAAAA--A--GAATGGGGATTAGTATGATATTCATGTTTGTCTTATTTAAAAGACA--
* * * *
20187 AACTTAGACTT-CA-CAAAAATTGGTGGGAA-AAAGG
122 AACTTTGA-TTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * * * * * * *
20221 CCTTTCCTGCAAAACCAAAACATCAA-ATAGCGAATCCTAA-AAGGAAGGCTATGCTTATGGTGC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGA-GAAGACTATGTTTATGGTGC
* * * *
20284 CTAATCCTAAAAAGAATGGAGG-TTAGTTTGACCATTCATGTCTGTCTTATTCT--TAGACAAAC
64 CTAAT-CTAAAAAGAATGG-GGATTAGTATGA-TATTCATGTTTGTCTTATT-TAAAAGACAAAC
* *
20346 TTTGATTCCTTCAAAAA-CGGTGGAAAGAAAAG
125 TTTGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * * * * *
20378 CTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGA-AGGGAATGTGTTTTTGGTAC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGACTATGTTTATGGTGC
** * * * ** ** **
20442 C-AATCCTAAAAAGAATGTAGATT-GTTACGAGAATCGATACTTGTCTTATTTAAGGGATGAACT
64 CTAAT-CTAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAAAAGACAAACT
** *** * *
20505 TTGATTTTAAGGAAAATAAG-GCAAAGAAAAG
126 TTGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * ** * * * * * * * * *
20536 ATTTCCGTGCAAAAGTAAATCATTAATATCATTTCTCCTAATGAG--GAATGTGCTTATAGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
** * * * ** * *
20599 TAATC-ACAAAATGAATGAAGATCATTGCTA-GA-ATCCAAGTTTGTCCCATTT--GAGGCATGA
65 TAATCTA-AAAA-GAATGGGGAT--TAG-TATGATATTCATGTTTGTCTTATTTAAAAGACA--A
* * * * *
20659 ACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAATG
123 ACTTTGA-TTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * * *
20692 CCTTTCTTGTGAAACCAAAACATCAATATCGTGTATCCTAAAGGGTAGACTATGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * * * * *
20757 TAATTGTAAAAAGAATGGGGGTTAGTTTGACCATTCATGTCTGTATT-CTT---AGACAAACATT
65 TAA-TCTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* * *
20818 GATTGCATAAAAAAT-GGT-GAAAAAAAAG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * ** * * *
20846 CTTTTTTTGCAACACCAAAGCATCAATGTCATGTATCCTAGA-GACGGGGA-TGTGTTTTTGGTA
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTA-ATGA-GAAGACTATGTTTATGGTG
* * ** * * * ** ** **
20909 CCAAATCTTGAAAAGAATGTAGATT-GTTACGAGAATCGATGCCTGTCTTATTTAAGGGATGAAC
63 CCTAATC-TAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAAAAGACAAAC
** *** * **
20973 TTTGATTTTAGGGAAAATAAG-GCCAAGAAAAG
125 TTTGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * ** * * * * * * *
21005 ATTTCCGTGC-AAATGAAAATCATCAATATCATTTCA-CCTAATGAG--GAATGTGCTTATAGTG
1 -TTTTCTTGCGACA-CCAAAGCATCAATATCGTGT-ATCCTAATGAGAAGACTATGTTTATGGTG
*** * * * * ** * *
21066 CCTAATC-ACAAAATGAATAAAGATCATTACTAGA-ATCCAAGTTTGTCCCATTT--GAGGCATG
63 CCTAATCTA-AAAA-GAATGGGGATTAGTA-T-GATATTCATGTTTGTCTTATTTAAAAGACA--
* * * * * *
21127 AACTTAGACTT-TA-CAAAAATTGCTGGGAA-AAATG
122 AACTTTGA-TTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * *
21161 CCTTTTC-CGTGAAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTACGGTG
1 --TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTG
* ** * * * * *
21224 CCTAATCCAGAAAAGAATATGGATTAGCATGACTATTCATGTTTGTCATATTTAAGAGCCAAACC
63 CCTAATCTA-AAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACT
* *
21289 TTGATTCTATCAAAAA-CGGTGGAAAGAAAAG
126 TTGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * ** *
21320 CTTTTCATGCGACACCAGAGCATCAATGTCAAGTATCCTAAT-A-AAGGAAATATGTTT-TAGGT
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAA-G-ACTATGTTTAT-GGT
* * * * * * * * ** ** **
21382 TCCTAATCTTGTAAATG-ATGGTGACT-GTAACGAGAATCGATGCCCT-TCTTATTTAAGGGATG
62 GCCTAATC-T-AAAAAGAATGGGGATTAGT-ATGATATTC-ATG-TTTGTCTTATTTAAAAGACA
* **
21444 AACTTTGATT--ATTAGAAAAATAGG-ACAAAGAAAAG
122 AACTTTGATTCCA-T-CAAAAATAGGTGGAAAGAAAAG
* * ** * ** * * * * * * * * *
21479 ATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATAGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * ** * * * * * *
21544 AAATC-ACAAAATTAACGACGATCATTACTAGA-ATCCATGTTTGTCTCATTT-AAGGCACGAAC
65 TAATCTA-AAAA-GAATGGGGATTAGTA-T-GATATTCATGTTTGTCTTATTTAAAAG-ACAAAC
* * * * **
21606 TTAGACTT-TA-CAAAAATTGGTGGGAA-AATTG
125 TTTGA-TTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * * *
21637 CCTTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATCAGAGGACTATGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * *
21702 AAATCCTGAAAAGAATGGGGATTTGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACATT
65 TAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
*
21767 GATTCCATCAAAAA-AGGGGGAAAGAAAAG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * * * *
21796 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCGTATTGA-AGGGAATGTGCTTT-TGGTA
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGACTATG-TTTATGGTG
* ** * * * * * * ** **
21859 CCCAATCTTGGAAACAATGGAGATT-GT-TGCGAGAATCGATGCTTGTCTTTTTTAAGGGATGAA
63 CCTAATC-TAAAAAGAATGGGGATTAGTAT--GATATTC-ATGTTTGTCTTATTTAAAAGACAAA
** *** * * *
21922 CTTTGATTTTAAGGAAAACA-GAGCAAAGAAAAG
124 CTTTGATTCCATCAAAAATAGGTGGAAAGAAAAG
** * * * ** * * * * ** * *
21955 ATTTTGATACAAAAGAAAATCATCAATATCATTTCTCCTAATGAG-A-A-TGGGCTTATAGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* ** * * * *
22017 TATTC-ACAAAATGAATGAAGATCATTACTAGA-A-TCTATGTTTGTCTTATTT--GAGGCATGA
65 TAATCTA-AAAA-GAATGGGGATTAGTA-T-GATATTC-ATGTTTGTCTTATTTAAAAGACA--A
* * * *
22077 ACTTAGACTT-TA-AAAAAATTGGTGG---GAAAATG
123 ACTTTGA-TTCCATCAAAAATAGGTGGAAAGAAAA-G
* * *
22109 CTTTTCTTGCGAAACCGAAA-CATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGC
1 -TTTTCTTGCGACACC-AAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * * * * *
22173 CTAATCCTAAAATGAAAGGGGATTAGTAAGAGTATTCATGTTTGTCATATTTTAGAGACAAACTT
64 CTAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTT
* * *
22238 TGATTCTATCAAAAACAAG-GGAAAGAAAAG
127 TGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * * ** *
22268 TTTTCTTGCTGTCACCAAAGCATCAATGTCATGTATCCTATTGA-AGGGGCGGTGTTTTTGGCT-
1 TTTTCTTGC-GACACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGACTATGTTTATGG-TG
* * * * * * *** **
22331 CGC-AATCTTGAAAAA-AGTGGAGATT-GTTATGAGAATCGATGCTTGTCTTCTTTAGGGGATGA
63 C-CTAATC-T-AAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAAAAGACAA
* ** ** * * *
22393 ACATTGATTTTATGGAAAATAAG-GCAAAGAAACG
123 ACTTTGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * ** * * * * * * * * *
22427 ATATCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAA-CA-AGGAATATGCTTATAGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
** * * * * *
22490 TAAT-TACAAAATGAATGAAGA-TCGT-TGCTGGAATCCATGTTTGTCTCATTT-GAAG-CATGA
65 TAATCTA-AAAA-GAATGGGGATTAGTATGAT---ATTCATGTTTGTCTTATTTAAAAGACA--A
* * * *
22550 A-TTTAGACTT-TA-CAAAAATTGGTGGGAA-AAAGG
123 ACTTT-GA-TTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * *
22583 CTTTTCATGCGGA-ACCAAAACATCAACATTGCGTATCCTAATGAGAAGACTATGTTTATGGTGC
1 -TTTTCTTGC-GACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * * * * * *
22647 CTAATCCTGAAAAGAGTGGGGATTCGCATGACTATTCATGCTTGGCTTATTTAAGAGACAAACTT
64 CTAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTT
* * *
22712 TGATTCCATCAAAAACA-GTGGAGAGGAAAG
127 TGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * *
22742 CTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGTACACTAAGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* **
22807 TAATCATGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTT
65 TAATC-TAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* * * *
22872 GATTCTATCAAACA-CGGAGGAAAGAAAAG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
* * ** * * **
22901 TTTTCTTGCGACACCAAAGCACCAATGTCAAGTATCCT-ATTA-AAGGGAC-AGTGTTTTCTACT
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAA--GACTA-TG-TTTATGGT
* * ** * * ** * *** **
22963 -CCCAATCTTGAAAAGAATGGAAATT-GTTATGAGAATCGATACTTGTGTTATTTAGGGGATGAA
62 GCCTAATC-TAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAAAAGACAAA
** ** * *
23026 CTTTGATTTAATGGAAAATAAG-GCAAAGAAAAG
124 CTTTGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * ** * * * * * * * *
23059 AATTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATAGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
** * * ** * *
23122 TAATC-ACAAAATGAATGAAGATAATTACTAGA-ATTCATGTTTGTCCCATTT--GAGGCATGAA
65 TAATCTA-AAAA-GAATGGGGATTAGTA-T-GATATTCATGTTTGTCTTATTTAAAAGACA--AA
* * * *
23183 CTTAGACTT-TA-CAAAAA-ATGGTGGGAA-AAATG
124 CTTTGA-TTCCATCAAAAATA-GGTGGAAAGAAAAG
* * ** * * * * *
23215 CTTTTCTTGCGA-AACAAAACATCAATATCGCCTATCTTAATGGGAAGGCTAAGTTTATTGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * * * *
23279 TAATCTTGAAAAGAATAGGAATTAGTATCAGTATTCATATTTGTCTTATGTAAGAGACAAACTTT
65 TAATC-TAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* *
23344 GATTCTAT-AAAAA-ACGGGGGAAAGAAAAG
128 GATTCCATCAAAAATA-GGTGGAAAGAAAAG
* * * * * * ** *
23373 TTTTCTTGTGACACCAAAGCATCAATTTCTTGTATCCTATTGA-AGGGCCGGTGTTTTTGGCT-C
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGACTATGTTTATGG-TGC
* * * * * * * * ** ***
23436 CCAATCTTGAAAAGAATGGAGATT-GTTACGAGAATCGATGCTTGTTTTATTT-AGGGTTGAACT
64 CTAATC-TAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAAAAGACAAACT
** ** * *
23499 TTGATTTTATGGAAAATAAG-GCAAAGAAAAG
126 TTGATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * ** * * * * * * * *
23530 ATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATAGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * ** * * * ** *
23593 TAATCCCAAAATGAATGAAGATCATTACTAGA-ATCCATGTTTGTCCCATTT--AAGGCATGAAC
65 TAAT-CTAAAAAGAATGGGGATTAGTA-T-GATATTCATGTTTGTCTTATTTAAAAGACA--AAC
* * * * *
23655 TTAGACTT-TA-CAAAAATTGGTGGGAA-AAAGG
125 TTTGA-TTCCATCAAAAATAGGTGGAAAGAAAAG
* * * * * * *
23686 CTTTTCTTGCGAAACCAAAACATCAATGTCATGTATCCTAGTGAGAGGACAATGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * *
23751 TAATCCAAAAAATAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTT
65 TAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* *
23816 GATTCCATAAAAAAT-GGTGGAAAGGAAAG
128 GATTCCATCAAAAATAGGTGGAAAGAAAAG
* * * *
23845 CTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGAGAAGACTAAGTTTATGGTGCT
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
*
23910 TAATCCTAAAAAAGAATGGGGATAAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTT
65 TAAT-CT-AAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTT
23975 TGATTCCAT-AAAAA-ACGG-GAGAAAGAAAAG
127 TGATTCCATCAAAAATA-GGTG-GAAAGAAAAG
**
24005 TTTTCTTATGACACCAAAGCATCAAT
1 TTTTCTTGCGACACCAAAGCATCAAT
24031 GTCAAGTATC
Statistics
Matches: 7705, Mismatches: 2457, Indels: 1428
0.66 0.21 0.12
Matches are distributed among these distances:
138 13 0.00
139 9 0.00
140 2 0.00
141 1 0.00
142 19 0.00
143 15 0.00
144 127 0.02
145 8 0.00
146 5 0.00
147 18 0.00
148 1 0.00
149 3 0.00
150 7 0.00
151 43 0.01
152 147 0.02
153 97 0.01
154 147 0.02
155 157 0.02
156 698 0.09
157 1163 0.15
158 2246 0.29
159 2509 0.33
160 238 0.03
161 29 0.00
162 2 0.00
163 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (157 bp):
TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
AATCTAAAAAGAATGGGGATTAGTATGATATTCATGTTTGTCTTATTTAAAAGACAAACTTTGAT
TCCATCAAAAATAGGTGGAAAGAAAAG
Found at i:14436 original size:633 final size:629
Alignment explanation
Indices: 13027--14934 Score: 2810
Period size: 633 Copynumber: 3.0 Consensus size: 629
13017 GTAATATCAC
*
13027 GTATCCTAATGAGAAGACTAAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
1 GTATCCTAATGAGAAGACT-AAGTTTATGGTGCCTAAT-CTAAAAAGAATGGGGATTAGTATGAG
*
13092 TATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTT
64 TATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGTT
* * *
13157 TTCTTGCGATACCAAAGCATCAATGTCAAGTATTCTATTGAAGGGACAGTGTTTTTGGCTCCCAA
129 TTCTTGCGACACCAAAGCATCAATGTTAAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAA
13222 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAGGGGATGAACTTTGAT
194 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTA-GGGATGAACTTTGAT
* * *
13287 TTTAAGGAAAATAAGGCAAAGAAAAGGTTTCCATGCAAAAAAAAATCATCAATATCATTTCTCCT
258 TTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCT
*
13352 AATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCATGTT
323 AATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * *
13417 TGCCTCATTTGAGGCATGAACTTAGATTTTACAAAAATTGGTGGGAAAAAGGCCTTTCATGCGAA
388 TTCC-CATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGCGAA
* * * * * * *
13482 ACCAAAACATCAATATTGCGTATCCTTATGAGAAAACTATGTTTATGATGCTTAATCTTCAAAAG
452 ATCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAG
* *
13547 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCACCAAAA
517 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAA
*
13612 ACGGTGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGT
582 ACGGTGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAAAGTCGT
* *
13660 GTATCCTAATGAGAAGATTAAGTTTATGGTGCCTAATGCTAAAAAGAATGGGGATTAGTTTGAGT
1 GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAAT-CTAAAAAGAATGGGGATTAGTATGAGT
* * * * *
13725 ATTCAAGTTCGTCTTATTTGAGAGGCAAGCTTTGATTCTATCAAAAATAGGGGAAAGAAAAGTTT
65 ATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGTTT
* * * * * *
13790 TCTTACAACACCAAAGCATCAATGTTAAGTATCCTATTAAAGGGTCAGTGTTTTTGGCTTCCAGT
130 TCTTGCGACACCAAAGCATCAATGTTAAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAAT
* * * *
13855 CTTGAAACGAATGGAGATTGTTATGAGAATCTATGCTTGTCTTTTTAAGGAGATGAACTTTGATT
195 CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAGG-GATGAACTTTGATT
* *
13920 TTATGAAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTCTCCTA
259 TTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTA
*
13985 ATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAGGTTT
324 ATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
14050 ATCCCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGGCCTTTCTTGCGAA
389 -TCCCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGGCCTTTCTTGCGAA
* * ** *
14115 ATCAAAACATCAGTATCGCATATCCTAATGAGAAGACTATGTTTATGGCACCTAATCCTGAAAAG
452 ATCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAG
* * *
14180 AATGGGGATTAGTATGACTATTCAAGTTTGTTTTATTTTAGAGACAAACTTTGATTCCATCAAAA
517 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAA
* * *
14245 ACGGTGGAAAGGAAAGCTTTTCTTGTGACATCAAAGCATCAAGGTCGT
582 ACGGTGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAAAGTCGT
* * *
14293 GTATCCTAATAAGAAGACTAAGTTTATGGTGCCTAATCATAAAAAAAATGGGGATAAGTATGAGT
1 GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATC-TAAAAAGAATGGGGATTAGTATGAGT
* * * * *
14358 ATTCATGTTTTTCTTATTTAAAAGACAAACTTTGATTCCATAAAAAATGGGGGAAAGAAAAGTTT
65 ATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGTTT
** * * * *
14423 TCTTGCGACACCAAAGCAAAAATGTTAAGTATCCTATTGATGGAACGGGGTTTTTGGCTCCCAAT
130 TCTTGCGACACCAAAGCATCAATGTTAAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAAT
*
14488 CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTTAGGGTTGAACTTTGATT
195 CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTT-TTTTAGGGATGAACTTTGATT
* *
14553 TTGTGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
259 TTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTA
* * * * * * * *
14618 GTTAGGAGAATGTGCCTATAGCGCCTAATCACAAAATTATTGATGATCATTTCTAGAATCCATGT
324 ATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * ** *
14683 TTGTCTCATTTAAGACACGAACTTAGACTTTACAAAAATTAGTGGGAAAATTGCCTTTTTTGC-A
387 TT-TCCCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGCGA
* * *
14747 AATCCAAAACATCAATATCACGTATCCTAATGGGAAGACTTTGTTTATGGTGCCTAATCTTGAAA
451 AAT-CAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
* * * * *
14812 AGAATGGGGATTTGTATGGCTCTTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTCTTCAA
515 AGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAA
* * *
14877 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAACAAAGTCAT
580 AAACGGTGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAAAGTCGT
14927 GTATCCTA
1 GTATCCTA
14935 TTGAAAGGAA
Statistics
Matches: 1138, Mismatches: 129, Indels: 15
0.89 0.10 0.01
Matches are distributed among these distances:
631 2 0.00
632 378 0.33
633 483 0.42
634 183 0.16
635 92 0.08
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (629 bp):
GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCTAAAAAGAATGGGGATTAGTATGAGTA
TTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGTTTT
CTTGCGACACCAAAGCATCAATGTTAAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATC
TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAGGGATGAACTTTGATTTT
ATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT
GAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTTC
CCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGCGAAATCA
AAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATG
GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGG
TGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAAAGTCGT
Found at i:15004 original size:476 final size:472
Alignment explanation
Indices: 14293--15882 Score: 2079
Period size: 476 Copynumber: 3.4 Consensus size: 472
14283 TCAAGGTCGT
* * * *
14293 GTATCCTAATAAGAAGACTAAGTTTATGGTGCCTAATCATAAAAAAAATGGGGATAAGTATGAGT
1 GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGTATGAGT
* * * *
14358 ATTCATGTTTTTCTTATTTAAAAGACAAACTTTGATTCCATAAAAAATGGGGGAAAGAAAAGTTT
66 ATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGTTT
* * * *
14423 TCTTGCGACACCAAAGCAA-AAATGTTAAGTATCCTATTG-ATGGAACGGGGTTTTTGGCTCCCA
131 TCTTGCGACACCAAAGCAACAAA-GTCATGTATCCTATTGAAAGGAA--GTGTTTTTGG-TCCCA
* *
14486 ATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTTAGGGTTGAACTTTGA
192 ATCTTGAAAAGAATGGAGATTGTTACGAGAATTGATGCTTGTCTTATTTTAGGGATGAACTTTGA
* *
14551 TTTTGTGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
257 TTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCC
* * * * * * * *
14616 TAGTTAGGAGAATGTGCCTATAGCGCCTAATCACAAAATTATTGATGATCATTTCTAGAATCCAT
322 TAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * *
14681 GTTTGTCTCATTTAAGACACGAACTTAGACTTTACAAAAATTAGTGGGAAAATTGCCTTTTTTGC
387 GTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTTTTGC
*
14746 AAATCCAAAACATCAATATCAC
452 AAA-CCAAAACATCAATATCGC
* ** * *
14768 GTATCCTAATGGGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATG-GC
1 GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGTATGAG-
* * * *
14832 TCTTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTCTTCAAAAACGGTGGAAAGAAAAGCT
65 TATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAG-T
*
14897 TTTCTTGCGACACCAAAGCAACAAAGTCATGTATCCTATTGAAAGGAATGTGCTTTTGGTACCCA
129 TTTCTTGCGACACCAAAGCAACAAAGTCATGTATCCTATTGAAAGGAA-GTGTTTTTGGT-CCCA
* ** * * *
14962 ATCTTGGAAAGGGTGGAGATTGTTGCGAGAATTGAGGCTTGTCTT-TTTTAAAGGATGAACTTTG
192 ATCTTGAAAAGAATGGAGATTGTTACGAGAATTGATGCTTGTCTTATTTT-AGGGATGAACTTTG
* **
15026 ATTTTAAGGAAAAT-AGAGCAAAGAAAAGATTTTGATGCAAAAGAAAATCATCAATATCATTTCT
256 ATTTTATGGAAAATAAG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCT
* *
15090 CCTAATGAGGAGAATGTGCTTATAATGCCTAATTACAAAATGAATGAAGATCATTACTAGAATCC
320 CCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * *
15155 ATGTTTATCTTATTTGCGGCAAGAACTTAGTCTTTACAAAAATTAGTAGGAAAAATG-CTTTTCT
385 ATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTT-T
*
15219 TACGAAACCAAAACATCAATATCGC
449 TGC-AAACCAAAACATCAATATCGC
* *
15244 GTATCCTAATGAGAAGATTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGTGTGAGT
1 GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGTATGAGT
* * * *
15309 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCGATCATAAACGG-GGAAAAAAAAGTTT
66 ATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGTTT
* * * * *
15373 TCTTGCGACACCAAAGCATCAACGTCATGTATCCTATTGAAGGGACAGTGTTTTTGACTCCCACT
131 TCTTGCGACACCAAAGCAACAAAGTCATGTATCCTATTGAAAGGA-AGTGTTTTTG-GTCCCAAT
* * *
15438 CTTGAAAAGAATGGACATTGTTACGAGAAGTGATGCTTGTCTTA-TTTAGGGGATGAACTTTGAC
194 CTTGAAAAGAATGGAGATTGTTACGAGAATTGATGCTTGTCTTATTTTA-GGGATGAACTTTGAT
*
15502 TTTATGGAAAATAAGGCAAAGAAAAGGTTTCCATGCAAAAGAAAA-CTATCAATATCATTTCTCC
258 TTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC-ATCAATATCATTTCTCC
* *
15566 TAATGA-G-GAATGTGCTTGTAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCAT
322 TAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * *
15629 GTTTGTCTCATTTGAGGCATGAAATTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCATGT
387 GTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTT--TTT
*
15694 G-AAACCAAAACATCAATATTGC
450 GCAAACCAAAACATCAATATCGC
* * * * * *
15716 GTATCCTAATGAGAAAACTATGTTTATGATGCCTAATCTTTAAAAGAATGGGGATTAGTATGACT
1 GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGTATGAGT
* * * * *
15781 ATTCATGTTTGTCTTATTTAAAAGACAAACATTGATTCCACCAAAAATGGTGGAATGGAAAGCTT
66 ATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAG-TT
* * *
15846 TTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTA
130 TTCTTGCGACACCAAAGCAACAAAGTCATGTATCCTA
15883 ATAAGAAGAT
Statistics
Matches: 970, Mismatches: 124, Indels: 43
0.85 0.11 0.04
Matches are distributed among these distances:
472 219 0.23
473 15 0.02
474 210 0.22
475 135 0.14
476 379 0.39
477 12 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (472 bp):
GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGTATGAGT
ATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGTTT
TCTTGCGACACCAAAGCAACAAAGTCATGTATCCTATTGAAAGGAAGTGTTTTTGGTCCCAATCT
TGAAAAGAATGGAGATTGTTACGAGAATTGATGCTTGTCTTATTTTAGGGATGAACTTTGATTTT
ATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT
GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
GTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTTTTGCAAAC
CAAAACATCAATATCGC
Found at i:15990 original size:631 final size:630
Alignment explanation
Indices: 15211--23411 Score: 2918
Period size: 631 Copynumber: 13.1 Consensus size: 630
15201 TAGGAAAAAT
* * * * * *
15211 GCTTTTCTTACGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGATTAAGTTTATGGTGC
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGATTAAGTTTATGGTGC
*
15276 CTAATCATGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
66 CTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * *
15341 TGATTCGATCATAAAC-GGGGAAAAAAAAGTTTTCTTGCGACACCAAAGCATCAACGTCATGTAT
131 TGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCA-GTAT
* * *
15405 CCTATTGAAGGGACAGTGTTTTTGACTCCCACTCTTGAAAAGAATGGACATTGTTACGAGAAGT-
195 CCTATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAA-TC
* *
15469 GATGCTTGTCTTATTTAGGGGATGAACTTTGACTTTATGGAAAATAAGGCAAAGAAAAGGTTTCC
259 GATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCC
*
15534 ATGCAAAAGAAAA-CTATCAATATCATTTCTCCTAATGAGGAATGTGCTTGTAGTGCCTAATCAC
324 ATGCAAAAGAAAATC-ATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCAC
* * *
15598 AAAATGAATGAAGGTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAATTAGACTTTA
388 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTA
*
15663 CAAAAATTGGTGGGAAAAAGGCCTTTCATGTGAAACCAAAACATCAATATTGCGTATCCTAATGA
453 CAAAAATTGGTGGGAAAAAGGCCTTTC-TGTGAAACCAAAACATCAATATCGCGTATCCTAATGA
* * *
15728 GAAAACTATGTTTATGATGCCTAATCTTTAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
517 GAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* * * * *
15793 CTTATTTAAAAGACAAACATTGATTCCACCAAAAATGGTGGAATGGAAA
582 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAAA
15842 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGATTAAGTTTATGGTGC
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGATTAAGTTTATGGTGC
* * *
15907 CTAATCCTGGAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAGCTT
66 CTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * *
15972 CGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCAACACCAAAGCGTCAATGTTAGTATC
131 TGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAGTATC
* * * *
16037 CTATTGAAGGGACATTGTCTTTGGCGT-CCAATGTTGAAATGAATGGAGATTGTTACGAGAATCG
196 CTATTGAAGGGACAGTGTTTTTGGC-TCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCG
* *
16101 ATGCTTGTCTT-TTTAAGGGGATGACCTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCA
260 ATGCTTGTCTTATTT-AGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCC
* * *
16165 ATGCAAAAGAAAATCATCAATATCATTTCTTCTTATGAGGAATGTGCTTATAGTGCCTAATCACG
324 ATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACA
* * * *
16230 AAATGAATGAAGATCATTACTAGAATCCAGGTTTATCCCATTTAAGGCATGAACTTAGACTTTTC
389 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTAC
* *** *
16295 AAAAATTGGTGGGAAAAAGGCCTTTCTTGCGAAACCAAAACATCAATATCATATATCCTAATGAT
454 AAAAATTGGTGGGAAAAAGGCCTTTC-TGTGAAACCAAAACATCAATATCGCGTATCCTAATGAG
* * * *
16360 AAGGCTATGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGAATGACTATTCATGTTTGTT
518 AAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
16425 TTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAAA
583 TTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAAA
* * * * *
16473 GCTTTTCTTGTGACACCAAAGCATCAAGGTCGTGTATCCTAATAATAAGACTAAGTTCATGGTGC
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGATTAAGTTTATGGTGC
* * * * * * *
16538 CTAATCCTAAAAAAAATAGGGG-TAACTATGAGTATTCATGTTTGTCTTATTCAAAAGACAAACT
66 CTAATCCTGAAAAGAAT-GGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * *
16602 TTGATTCCT-TTAAAAGCGGGGGAAGGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGT
130 TTGATT-CTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTC-AGT
* * * *
16666 ATCCTATTGATGGGACAGGGTTTTTGGCTCACAATCTTGAAAAGAATGGAGATTGTTGCGAGAAT
193 ATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAAT
* *
16731 CGATGCTTGTCTTATTTAGGGGACGAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTT-
258 CGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTC
* * * *
16795 CATGCAAAAGAAAATCATCAATATCATTTATCC-ATGTGAGGAGAATGTGCCTATAGTGCCCAAT
323 CATGCAAAAGAAAATCATCAATATCATTTCTCCTA-ATGA-G-GAATGTGCTTATAGTGCCTAAT
* * * * *
16859 CACAAAATTAATGACGATCATTACTAGAATCCATGTTTGTCTTATTTAAGGTACGAACTTAGACT
385 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACT
* * ** *
16924 TTACAGAAATTAGTGGGAAAATTGCCTTTCT-TGCAAATCCAAAACATCAATATCGCGTTTCCTA
450 TTACAAAAATTGGTGGGAAAAAGGCCTTTCTGTG-AAA-CCAAAACATCAATATCGCGTATCCTA
* * *
16988 ATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGGCTCTTCATGT
513 ATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGT
* * * **
17053 TTGTCATATTTAAGAGACAAACTTTTATTTCATCAAAAACGGTGGAAAAAAAA
578 TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAAA
* * * * * * **
17106 GCTTTTCTTGCAACACCAAAGCAACAATGTCATGTATCCTATTGAAG-GGAATGTGCTTT-TGGT
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAAT-AAGAAGATTAAG-TTTATGGT
* * * * * * * * * * **
17169 ACCCAATCTTGGAAAGAGTGGAGATT-GT-TGCAAGAATTGATGCTTGTCTTTTTTACAG-GATG
64 GCCTAATCCTGAAAAGAATGGGGATTAGTGTG--AGTATTCATGTTTGTCTTATTTA-AGAGACA
* * *** ** * * ** * * * ** * *
17231 AAGTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTGATACAAAAGAAAATCATCAATATC
126 AACTTTGATTCTATCAAAAACGGGGGAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTC
* * * * * ** * ** ** **
17296 ATTTCTCCTAATG-AGGAGA-ATGTGCTTAT-AATGCCTAATC-ACAAAATGAATAAAGATCATT
190 A-GTATCCTATTGAAGG-GACA-GTGTTTTTGGCT-CCCAATCTTGAAAA-GAATGGAGATTGTT
* * * ** * * * ** * *
17357 ACTAGAATCCATGTTTGTCCCATTT-GAGGCATGAACTTAGACTTTA-CAAAAAT-TGG-AAGGA
250 ACGAGAATCGATGCTTGTCTTATTTAG-GGGATGAACTTTGATTTTATGGAAAATAAGGCAAAG-
* * **** * *
17418 AAAAGGCCTTT-CATGCAAAACCAAAA-CATCAATATTGCGTATCCTAATGA-GAA-G-AC-TAT
313 AAAA-G-ATTTCCATGCAAAA-GAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTAT
** * ** *** * * * *
17477 -GT-TATGATATCTTCAAAA-GAATGGGGATTGGTACGACAATTCATGTTTGTCTTATTTAAAAG
375 AGTGCCT-A-ATC-ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT--AAG
* * * ** * * * *
17539 ACA--AACTTTGAGTCCACCAAAAA-TGGT-GGAAAGGAAAGCTTTTCT-TG----C--GACACC
435 GCATGAACTTAGACTTTA-CAAAAATTGGTGGGAAA--AAGGCCTTTCTGTGAAACCAAAACATC
* * * * *
17593 AA-A--GC--AT-C-AATGAGAAGATTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATAA
497 AATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTA
* * * ** * * * *
17651 GTTTGAGTATTCATGTTTGTCTTATTTAACAGGTAAGCTTTGATTCTATCAAAAATGGGGGAAA-
562 GTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAG
*
17715 AAAA
627 GAAA
* ** * * *
17719 G-TTTTCTTGCAACACCAAAGCATCAAAAATGGTGGA--C--------AG--T--GTTTTTGGCA
1 GCTTTTCTTGCGACACCAAAGCATC-AATGTCGTGTATCCTAATAAGAAGATTAAGTTTATGG--
* * * ** * *
17769 T-CC-AATCTTGAAATGAATGGAGATT-GT-TACGAG-AACCGATGCTTGTCTT-TTTAAGGGGA
63 TGCCTAATCCTGAAAAGAATGGGGATTAGTGT--GAGTATTC-ATGTTTGTCTTATTTAA-GAGA
** * *** ** * * * * ** *
17828 TGAACTTTGATTTTAT-AGAAAATAAGTCAAAGAGAAAGATTTCCATGCAAAAGAAAATCATCAA
124 CAAACTTTGATTCTATCA-AAAACGGGGGAAAGA-AAAG-TTTTCTTGCGACACCAAAGCATCAA
* * * * * * * * * ** *
17892 TATCATTTCTCCTAAT-AA-GGA-ATCTGCTTATAG-TGCCTAATC-ACAAAATGAATGAAG-TT
186 TGTCA-GTATCCTATTGAAGGGACA-GTGTTTTTGGCT-CCCAATCTTGAAAA-GAATGGAGATT
* * * * *** * * * * ** *
17951 ATTACTAGAATCCATGTTTGTCCCGTTT-GAGGCACGAACTTAGACTTTA-CAAAAATTGGAGG-
247 GTTACGAGAATCGATGCTTGTCTTATTTAG-GGGATGAACTTTGATTTTATGGAAAA-T-AAGGC
* * * * ** *** * * * *
18013 GAA-AAAGGCCTTT-CTTGCGAAACCAAAA-CATCAATATCGCATATCCTAAAGAGAAGACTATG
309 AAAGAAAAG-ATTTCCATGC-AAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTG
* * * * ** * * * * *
18075 TTTATGGAGCCTAATC-CAAAAAAGAATGGGGATTAATA-T-GACTATTCATATTTGTCTTATTT
370 CTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTACTAGA--ATCCATGTTTGTCTCATTT
* * * * * * *
18137 AAGAGACA--AACTTTGA-TTTCATCAAAAA-TGGT-GAAAATGAAAGCTTTTATTGCGACACCA
432 AAG-G-CATGAACTTAGACTTT-A-CAAAAATTGGTGGGAAA--AAGGCCTTT-CTGTGAAACCA
* * ** * * *
18197 AAGCATCAATGTCATGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGATTG
490 AAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATG
* * * ** *
18262 GGGATAAGTATGAGTATTCATGTTTGGCTTATTTAAGAG--AAACTTTGATTCTGTCAAAAACAA
555 GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAC-G
*
18325 G-GGAAAGAAAA
619 GTGGAAAGGAAA
* ** * * * *
18336 G-TTTTCTTGCGACACCAAAGCATCAATTTCAAGTATCCTATTAA-AGGGA-CAATGTTTTTGGC
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATAAGA-AGATTAA-GTTTATGG-
* * * * * * * * **
18398 T-CCTAATCTTGAAAAGAATGGAGATT-GTTATGAG-AATCGATGCTTGTCATATTTAGGGGATG
63 TGCCTAATCCTGAAAAGAATGGGGATTAG-TGTGAGTATTC-ATGTTTGTCTTATTTAAGAGACA
* * ** * * * * * * ** * *
18460 AACTTTGATTTTCTGGAAAACGAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
126 AACTTTGATTCTATCAAAAACGGGGGAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTC
** * * * * ** * *
18525 TTTTATCCTAGTG-AGGAGA-ATGTGCTTATAGTG-T-CAAATC-ACAAAATTAATGGCA-ATCG
190 -AGTATCCTATTGAAGG-GACA-GTG-TTTTTG-GCTCCCAATCTTGAAAA-GAATGG-AGATTG
* * * * * * * * * * * * *
18584 TTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTCTA--CAAAGAT-TGG-AAG
248 TTACGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAA-ATAAGGCAAA
* **** * * *
18645 GAAAAAGACCTTT-CATGCAAAACCAAAA-CATCAATATTGCGTATCCTAATGAGAAGACTATG-
312 G-AAAAGA--TTTCCATGCAAAA-GAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGC
* ** * * * ** * *
18707 TTAT-GAT-ACT--T--CAAAA-GAATGGGGATTAGTACGACTATTCATGTTTGTCTTATTTAAA
371 TTATAG-TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT--A
* * * * * * * * *
18765 AGACA--AACTTTGA-TTCCACCAAAAA-CGGT-GGAAAGGAAAGCTTTTCTTGCGATACCAAAG
433 AGGCATGAACTTAGACTT-TA-CAAAAATTGGTGGGAAA--AAGGCCTTTC-TGTGAAACCAAAA
* * * * * *
18825 CATCAATGTCGTGTATCCTAATGAGAAGATTAAGTTTATGGTGCCTAATCCTGAAAGGAATGGGG
493 CATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGG
*
18890 ATTAATATGACTATTCATGTTTGTCTTATTTAAGAGA-AAACTTTGATTCCATCAAAAACGGTGG
558 ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
18954 -AAGGAAA
623 AAAGGAAA
* ** * * * * *
18961 GGCTTTTCATGCGACACTGAAGTATCAA---C--GTATCCTATTGATGGA-ATGT--GTTTTTGG
1 -GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAAT-AAGAAGAT-TAAGTTTATGG
* * * * * * * * *
19018 TTCCCAATCTTGAAAAGAATGGTGATT-GT-TACAAG-AATCGATGTCTGTCTTATTTAAGGGAT
63 TGCCTAATCCTGAAAAGAATGGGGATTAGTGT--GAGTATTC-ATGTTTGTCTTATTTAAGAGAC
* * ** * * * * * ** *
19080 GAACGTTT-ATTTTA-CGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
125 AAAC-TTTGATTCTATC-AAAAACGGGGGAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAAT
* * * * * * * ** * * **
19143 ATCATTTATCCTAGTG-AGGAGA-ATGTGCTTATGGCGCCTAATC-ACAGAATGAATGAAGATCA
187 GTCA-GTATCCTATTGAAGG-GACA-GTGTTTTTGGCTCCCAATCTTGA-AAAGAATGGAGATTG
* * * * * * * * *** * **
19205 TTACTAGAATCTATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAAAT-GGTGGGAA
248 TTACGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAG-GCAAA
* * * ** *** * * * *
19269 -AAAGGCCTTT-CTTGCGAAACCAAAA-CATCAATATCGCGTATCCTAAAG-GGAAGACTATGTT
312 GAAAAG-ATTTCCATGC-AAAAGAAAATCATCAATATCATTTCTCCTAATGAGG-A-A-TGTGCT
* * * * ** * * *
19330 TATGGTGCTTAATC-CTAAAAAGAATG-GGGGCTAGTT--T-GACCATTCATGTCTGTCTTATTC
372 TATAGTGCCTAATCAC-AAAATGAATGAAGATC-A-TTACTAGA--ATCCATGTTTGTCTCATT-
* * * * * * * * *
19390 TTAGACA--AACTTTGA-TTCCTTCAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAA
431 TAAGGCATGAACTTAGACTT--TACAAAAATTGGTGGGAA-AAAGGCCTTTC-TGTGAAACCAAA
* * ** * * * * *
19451 GCATCAATGTCATGTATCCT-AT-AGAAGGGATTGTGTTTTTGGTACCAAATCTTGAAAAGAATG
492 ACATCAATATCGCGTATCCTAATGAGAA--GACTATGTTTATGGTGCCTAATCTTGAAAAGAATG
** ** * * * ** ** **
19514 TAGATT-GTTATGAGAATTTATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGGAAAATA
555 GGGATTAG-TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCA-TCAAAA-A
* *
19578 AGGT--AAAGAAAA
617 CGGTGGAAAGGAAA
** * * * * ** * * * * * * * * *
19590 TATTTCCGTGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGA-ATGT--GCTTATAGTG
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGAT-TAAGTTTATGGTG
*** * * * * * ** *
19652 CCTAATCAC--AAAATGAATGAAAATCATTGCT-AGAATCCAAGTTTGTCCCATTT--GAGGCAT
65 CCTAATC-CTGAAAA-GAATGGGGATTAGTG-TGAGTATTCATGTTTGTCTTATTTAAGAGACA-
* * * * * *
19712 GAACTTAGACTT-TA-CAAAAATTGGTGGG-AA-AAATGCCTTTCTTGCGAAACCAAAACATCAA
126 -AACTTTGA-TTCTATCAAAAA-CGG-GGGAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAA
* * * * * * * * * * *
19773 TATC-GT-GCATTTTAAAGAGAATACTA-TGTTTATGG-TGCCTAATAC-TGAAAAAAATGGGGG
186 TGTCAGTATCCTATTGAAG-G--GAC-AGTGTTTTTGGCT-CCCAAT-CTTGAAAAGAATGGAGA
* * * * * * * ** * *** *
19833 TTAGTT-TGACCATTC-TTGTTTGTCTTATTTAAGAGACAAACTTTGAATCCGT-CAAAA-ACAG
245 TT-GTTACGA-GAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATA-AG
* * * * * ** * * * *
19894 TGGAAAGAAAAGCTTTTCTTGCAATACCAAATCATCAATGTCATGTATCCTATTGAAGGGAATGT
307 -GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATG-A-GGAATGT
* * * * ** * ** * ** * *
19959 GTTTTTGGTAG-CAAATCTTGAAAA-GAATGTAGATTGTTACGAGAATTGATGCTTGTCTTATTT
369 GCTTATAGT-GCCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * * *** * ** ** * * ** *
20022 AGGGGATGAACTTTGATTTTTTGGAAAGTAAG-GCAAAGAAAAG-ATTTCCATGCAATA-GAAAA
432 AAGGCATGAACTTAGA-CTTTACAAAAATTGGTGGGAA-AAAGGCCTTTCTGTG-AA-ACCAAAA
*** * * * * * * *****
20084 TCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATAGCGCCTAAAGACAAAATTATTGAA
493 -CATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA--A--GAA
*** * * * *
20147 -GATCATTAGTA-GA--ATCCATGTTTGTCTCA-TT-AGAGGCATGAACTTAGACTT-CA-CAAA
553 TGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCCATCAAA
* *
20204 AATTGGTGGGAAA--AAG
615 AA-CGGT-GGAAAGGAAA
* * * * * * * * * ** * *
20220 GCCTTTCCTGCAAAACCAAAACATCAA-ATAGCGAATCCTAA-AAGGAAGGCTATGCTTATGGTG
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATAA-GAAGATTAAGTTTATGGTG
* * ** * *
20283 CCTAATCCTAAAAAGAATGGAGG-TTAGTTTGACCATTCATGTCTGTCTTATTCT--TAGACAAA
65 CCTAATCCTGAAAAGAATGG-GGATTAGTGTGAGTATTCATGTTTGTCTTATT-TAAGAGACAAA
* *
20345 CTTTGATTCCT-TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCA
128 CTTTGATT-CTATCAAAAACGGGGGAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCA
* * * *
20409 TGTATCCTATTGAAGGGA-ATGTGTTTTTGG-TACCAATCCTAAAAAGAATGTAGATTGTTACGA
191 -GTATCCTATTGAAGGGACA-GTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGA
* * *
20472 GAATCGATACTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA
254 GAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGA
* * *
20537 TTTCCGTGCAAAAGTAAATCATTAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAA
319 TTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAA
* * * *
20602 TCACAAAATGAATGAAGATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGAC
384 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGAC
* *
20667 TTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGTGAAACCAAAACATCAATATCGTGTATCCTA
449 TTTACAAAAATTGGTGGGAAAAAGGCCTTTC-TGTGAAACCAAAACATCAATATCGCGTATCCTA
* * * * * * *
20732 AAGGGTAGACTATGTTTATGGTGCCTAAT-TGTAAAAAGAATGGGGGTTAGTTTGACCATTCATG
513 ATGAGAAGACTATGTTTATGGTGCCTAATCT-TGAAAAGAATGGGGATTAGTATGACTATTCATG
* * * * * * * **
20796 TCTGTATT-CTT---AGACAAACATTGATTGCATAAAAAATGGT-GAAAAAAAA
577 TTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAAA
* * * * * ** *
20845 GCTTTTTTTGCAACACCAAAGCATCAATGTCATGTATCCTAGAGACGGGGATGT--GTTTTTGGT
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTA-ATAAGAAGAT-TAAGTTTATGGT
* * * ** * ** * **
20908 ACCAAATCTTGAAAAGAATGTAGATT-GT-TACGAG-AATCGATGCCTGTCTTATTTAAGGGATG
64 GCCTAATCCTGAAAAGAATGGGGATTAGTGT--GAGTATTC-ATGTTTGTCTTATTTAAGAGACA
* *** *** ** * * * ** * *
20970 AACTTTGATTTTAGGGAAAATAAGGCCAAGAAAAGATTTCCGTGC-AAATGAAAATCATCAATAT
126 AACTTTGATTCTATCAAAAACGGGGGAAAGAAAAG-TTTTCTTGCGACA-CCAAAGCATCAATGT
* * * * * * ** ** **
21034 CA-TTTCACCTAATG-A-GGA-ATGTGCTTATAG-TGCCTAATC-ACAAAATGAATAAAGATCAT
189 CAGTAT--CCTATTGAAGGGACA-GTGTTTTTGGCT-CCCAATCTTGAAAA-GAATGGAGATTGT
* * * * ** * * * ** * **
21093 TACTAGAATCCAAGTTTGTCCCATTT-GAGGCATGAACTTAGACTTTA-CAAAAAT-TGCTGGGA
249 TACGAGAATCGATGCTTGTCTTATTTAG-GGGATGAACTTTGATTTTATGGAAAATAAG--GCAA
* * * ** * * * * ** *
21155 A-AAATGCCTTTTCCGTG--AAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTT
311 AGAAAAG--ATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCT
** * * * *
21217 TACGGTGCCTAATC-CAGAA--AA-GAATATGGATTAGC-ATGACTATTCATGTTTGTCAT-ATT
372 TATAGTGCCTAATCACAAAATGAATGAAGAT-CATTA-CTA-GA--ATCCATGTTTGTC-TCATT
* * * * * *
21276 TAAGAGCCA--AACCTT-GA-TTCTATCAAAAA-CGGTGGAAAGAAAAGCTTTTCATGCGACACC
431 TAAG-G-CATGAA-CTTAGACTT-TA-CAAAAATTGGTGGGAA-AAAGGCCTTTC-TGTGAAACC
* * * ** * * *
21336 AGAGCATCAATGTCAAGTATCCTAAT-A-AAGGAAATATGTTT-TAGGTTCCTAATCTTGTAAAT
489 AAAACATCAATATCGCGTATCCTAATGAGAA-G-ACTATGTTTAT-GGTGCCTAATCTTG-AAAA
* * * * * ** * ** *
21398 G-ATGGTGACT-GTAACGA-GAATCGATGCCCT-TCTTATTTAAGGGATGAACTTTGATT--ATT
550 GAATGGGGATTAGT-ATGACTATTC-ATG-TTTGTCTTATTTAAGAGACAAACTTTGATTCCATC
* *
21457 AGAAAA--ATAGGACAAAGAAAA
612 A-AAAACGGT-GG--AAAGGAAA
* * * ** * ** * * * * * * * * ** * *
21478 GATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATAGTGC
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGATTAAGTTTATGGTGC
* * * ** * * * * * * *
21543 CAAATCAC--AAAATTAACGACGATCATTACT-AGAATCCATGTTTGTCTCATTTAAG-GCACGA
66 CTAATC-CTGAAAA-GAATGGGGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAG-ACAA
* * ** * * * * *
21604 ACTTAGACTT-TA-CAAAAATTGGTGGG-AA-AATTGCCTTTCTTGCAAAACCAAAACATCAATA
127 ACTTTGA-TTCTATCAAAAA-CGG-GGGAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAATG
* * * * * * *
21665 TCGCGTATCCTAAT-CAGAGGACTA-TGTTTATGG-TGCCAAATCCTGAAAAGAATGGGGATT-T
188 TC-AGTATCCTATTGAAG-GGAC-AGTGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAGATTGT
* * * * * * ** * ** * *
21726 GTATGACTATTC-ATGTTTGTCTTATTTAAGAGACAAACATTGATTCCAT-CAAAA-AAGGGGGA
249 -TACGA-GAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAA--GGCA
* * * * * ** * * * * * *
21788 AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCGTATTGAAGGGAATGTGCTT
310 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATG-A-GGAATGTGCTT
* * * * *** * * ** * * * * ** *
21853 TTGGTACCCAATCTTGGAAA-CAATGGAGATTGTTGCGAGAATCGATGCTTGTCTTTTTTAAGGG
373 ATAGTGCCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGC
* * ** * ** * * * **
21917 ATGAACTTTGATTTTA-AGGAAAA-CAGAGCAAAGAAAAG-ATTT-TGATACAAAAGAAAATCAT
437 ATGAACTTAGACTTTACA--AAAATTGGTGGGAA-AAAGGCCTTTCTG-T-GAAACCAAAA-CAT
*** * ** * * * ** **
21978 CAATATCATTTCTCCTAATGAG-A-A-TGGGCTTATAGTGCCTATTC-ACAAAATGAATGAAGAT
496 CAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAA-GAATGGGGAT
* * * * * * *
22039 CA-T-T-ACTAGAATCTATGTTTGTCTTATTT--GAGGCATGAACTTAGACTT-TA-AAAAAATT
560 TAGTATGACT--ATTC-ATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCCATCAAAAA-C
* *
22097 GGTGGGAA--AAT
618 GGTGGAAAGGAAA
* * * * *
22108 GCTTTTCTTGCGAAACCGAAA-CATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTG
1 GCTTTTCTTGCGACACC-AAAGCATCAATGTCGTGTATCCTAATAAGAAGATTAAGTTTATGGTG
* ** * *
22172 CCTAATCCT-AAAATGAAAGGGGATTAGTAAGAGTATTCATGTTTGTCATATTTTAGAGACAAAC
65 CCTAATCCTGAAAA-GAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
** *
22236 TTTGATTCTATCAAAAACAAGGGAAAGAAAAGTTTTCTTGCTGTCACCAAAGCATCAATGTCATG
129 TTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGC-GACACCAAAGCATCAATGTCA-G
* * * *
22301 TATCCTATTGAAGGGGCGGTGTTTTTGGCTCGCAATCTTGAAAA-AAGTGGAGATTGTTATGAGA
192 TATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAAGAA-TGGAGATTGTTACGAGA
* * * *
22365 ATCGATGCTTGTCTTCTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCAAAGAAACGATA
256 ATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATT
** * *
22430 TCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAACAAGGAATATGCTTATAGTGCCTAATT
321 TCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATC
* * * *
22495 ACAAAATGAATGAAGATCGTTGCTGGAATCCATGTTTGTCTCATTTGAA-GCATGAATTTAGACT
386 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AAGGCATGAACTTAGACT
* * * * *
22559 TTACAAAAATTGGTGGGAAAAAGGCTTTTCATGCGGAACCAAAACATCAACATTGCGTATCCTAA
450 TTACAAAAATTGGTGGGAAAAAGGCCTTTC-TGTGAAACCAAAACATCAATATCGCGTATCCTAA
* * * * *
22624 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAGTGGGGATTCGCATGACTATTCATGCT
514 TGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTT
* * *
22689 TGGCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACAGTGGAGAGGAAA
579 TGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAAA
* * * *
22741 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGTACACTAAGTTTATGGTGC
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGATTAAGTTTATGGTGC
* * *
22806 CTAATCATGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTT
66 CTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
22871 TGATTCTATCAAACACGGAGGAAAGAAAAGTTTTCTTGCGACACCAAAGCACCAATGTCAAGTAT
131 TGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTC-AGTAT
* * * *
22936 CCTATTAAAGGGACAGTGTTTTCT-ACTCCCAATCTTGAAAAGAATGGAAATTGTTATGAGAATC
195 CCTATTGAAGGGACAGTGTTTT-TGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATC
* * * *
23000 GATACTTGTGTTATTTAGGGGATGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGAATTCC
259 GATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCC
23065 ATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACA
324 ATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACA
* * * *
23130 AAATGAATGAAGATAATTACTAGAATTCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTAC
389 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTAC
* * * * * * *
23195 AAAAAATGGTGGGAAAAATGCTTTTCTTGCGAAA-CAAAACATCAATATCGCCTATCTTAATGGG
454 AAAAATTGGTGGGAAAAAGGCCTTTC-TGTGAAACCAAAACATCAATATCGCGTATCCTAATGAG
* * * * * * * *
23259 AAGGCTAAGTTTATTGTGCCTAATCTTGAAAAGAATAGGAATTAGTATCAGTATTCATATTTGTC
518 AAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * * *
23324 TTATGTAAGAGACAAACTTTGATTCTATAAAAAACGGGGGAAAGAAAA
583 TTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAAA
* * *
23372 G-TTTTCTTGTGACACCAAAGCATCAATTTCTTGTATCCTA
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTA
23412 TTGAAGGGCC
Statistics
Matches: 5811, Mismatches: 1311, Indels: 897
0.72 0.16 0.11
Matches are distributed among these distances:
597 91 0.02
598 50 0.01
599 68 0.01
600 51 0.01
601 8 0.00
602 5 0.00
603 73 0.01
604 3 0.00
605 2 0.00
609 1 0.00
611 6 0.00
612 22 0.00
613 11 0.00
614 94 0.02
615 1 0.00
616 32 0.01
617 29 0.00
618 80 0.01
619 3 0.00
620 7 0.00
621 237 0.04
622 31 0.01
623 17 0.00
624 12 0.00
625 290 0.05
626 153 0.03
627 324 0.06
628 289 0.05
629 250 0.04
630 385 0.07
631 1319 0.23
632 811 0.14
633 681 0.12
634 226 0.04
635 126 0.02
636 8 0.00
637 6 0.00
638 5 0.00
639 4 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (630 bp):
GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGATTAAGTTTATGGTGC
CTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
TGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAGTATC
CTATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGA
TGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCAT
GCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAA
ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAA
AAATTGGTGGGAAAAAGGCCTTTCTGTGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAG
ACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
TTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAAA
Found at i:20638 original size:945 final size:948
Alignment explanation
Indices: 16487--22781 Score: 5281
Period size: 945 Copynumber: 6.7 Consensus size: 948
16477 TTCTTGTGAC
* ** * * * * * *
16487 ACCAAAGCATCAAGGTCGTGTATCCTAATAATAAGACTAAGTTCATGGTGCCTAATCCTAAAAAA
1 ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
* * ** * * ** *
16552 AATAGG-GG-TAACTATGAGTATTCATGTTTGTCTTATTCAAAAGACAAACTTTGATTCCT-TTA
66 AAT-GGAGGATTAGTATGACCATTCATGTCTGTCATATT--TTAGACAAACTTTGATT-CTATCA
* * * * * *
16614 AAAGCGGGGGAAGGAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGATG
127 AAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAG
* * *
16678 GGACA-GGGTTTTTGG--CTCACAATCTTG-AAAAGAATGGAGATTGTTGCGAGAATCGATGCTT
192 GGA-ATGTGTTTTTGGTAC-CA-AATCTTGAAAAAGAATGTAGATTGTTACGAGAATCGATGCTT
* * * *
16739 GTCTTATTTAGGGGACGAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTT-CATGCAAA
254 GTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * * *
16803 AGAAAATCATCAATATCATTTATCC-ATGTGAGGAGAATGTGCCTATAGTGCCCAATCACAAAAT
319 AGAAAATCATCAATATCATTTCTCCTA-ATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAAT
* * * * ** * * * *
16867 TAATGACGATCATTACTAGAATCCATGTTTGTCTTATTTAAGGTACGAACTTAGACTTTACAGAA
381 GAATGAAGATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAA
* * * *
16932 ATTAGTGGGAAAATTGCCTTTCTTGC-AAATCCAAAACATCAATATCGCGTTTCCTAATGAGAAG
446 ATTGGTGGGAAAAATGCCTTTCTTGCGAAA-CCAAAACATCAATATCGTGTATCCTAATGAGAAG
* * * * *
16996 ACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGGCTCTTCATGTTTGTCATA
510 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
* * * * *
17061 TTTAAGAGACAAACTTTTATTTCATCAAAAACGGTGGAAAAAAAAGCTTTTCTTGCAACACCAAA
575 TTTAAGAGACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * * *
17126 GCAACAATGTCATGTATCCTATTGAAGGGAATGTGCTTTTGGTACCCAATCTTGGAAAGAGTGGA
640 GCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGTA
* * * * *
17191 GATTGTTGCAAGAATTGATGCTTGTCTTTTTTACA-GGATGAAGTTTGATTTTAAGGAAAAT-AG
705 GATTGTTACGAGAATCGATGCTTGTCTTATTTA-AGGGATGAACTTTGATTTTAAGGAAAATAAG
** *
17254 AGCAAAGAAAAGATTTTGATACAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGT
769 -GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGT
** * * *
17319 GCTTATAATGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCCCATTTGA
831 GCTTATAGCGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTAGA
** * *
17384 GGCATGAACTTAGACTTTACAAAAATTGGAAGGAAAAAGGCCTTTCATGCAAA
896 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCCTGCGAA
* * * *
17437 ACCAAAACATCAATATTGCGTATCCTAATGAGAAGACTATG-TTA---TG-AT-ATCTTCAAAAG
1 ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
* * * * * * * * *
17496 AATGG-GGATTGGTACGACAATTCATGTTTGTCTTATTTAAAAGACAAACTTTGAGTCCACCAAA
66 AATGGAGGATTAGTATGACCATTCATGTCTGTCATATTT--TAGACAAACTTTGATTCTATCAAA
* * * **
17560 AATGGTGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATG--A-G-A----A--G-A-TT
129 AACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGG
* * * * ** * * * *
17613 AA---GTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATAAGTT-TGAGTATTC-ATGTTTGTC
194 AATGTGTTTTTGGTACCAAATCTTGAAAAAGAATGTAGAT-TGTTACGAG-AATCGATGCTTGTC
* * *** ** * * * *
17672 TTATTTAACAGG-T-AAGCTTTGATTCTATCAAAAATGGGGGAAA-AAAAG-TTTTCTTGCAACA
257 TTATTTAA-GGGATGAA-CTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
** * * * * * ***
17733 CCAAAGCATC-A-A--A--------AATGGTGGACA-GTG-TTTTTG-GCATCCAATCTTGAAAT
320 GAAAATCATCAATATCATTTCTCCTAAT-GAGGA-ATGTGCTTATAGTGC--CTAATCACAAAAT
* ** * * * * ** * * * * *
17783 GAATGGAGATTGTTACGAGAA-CCGATGCTTGT-CTTTTTAAGGGGATGAACTTTGATTTTATAG
381 GAATGAAGATCATTGCTAGAATCC-AAGTTTGTCCCATTTGA-GGCATGAACTTAGACTTTACA-
** ** * * * ** * * *
17846 AAAATAAGT-CAAAGAGAAAG-ATTTCCATGC-AAAAGAAAATCATCAATATCATTTCTCCTAAT
443 AAAATTGGTGGGAA-A-AATGCCTTT-CTTGCGAAACCAAAA-CATCAATATCGTGTATCCTAAT
* * * * * ** * *
17908 -A-AGGAATCTGCTTATAGTGCCTAATCAC--AAAATGAATGAAG-TTATTACTAGA--ATCCAT
504 GAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGGGATTAGTA-T-GACTATTCAT
*** * * * * * ** *
17966 GTTTGTCCCGTTTGAG-GCACGAACTTAGACTT-TA-C-AAAA-ATTGGAGGGAAAAAGGCCTTT
565 GTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCCATCAAAAACAGTGGAAAG-AAAA-GCTTTT
* * * *** ** * * * * *
18026 CTTGCGAAACCAAAACATCAATATCGCATATCCTAAAG-AGAAGACTATGTTTATGG-AGCCTAA
626 CTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAG-GGAATGTGTTTTTGGTA-CCAAA
*** ** ** * * * ** * **
18089 TCCAAAAAAGAATGGGGATTAATATGACTATTC-ATATTTGTCTTATTTAAGAGACAAACTTTGA
689 TCTTGAAAAGAATGTAGATTGTTACGA-GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* *** * * * * * * ** * * * *
18153 TTTCATCAAAAAT-GGTGAAAATG-AAAGCTTT-TATTGCGACACCAAAGCATCAATGTCATGTA
753 TTTTAAGGAAAATAAG-GCAAA-GAAAAGATTTCCA-TGCAAAAGAAAATCATCAATATCATTTC
* ** * * * * ** * * *
18215 TCCTAATGAGAAGACTAAGTTTATGGTGCCTAATC-CTGAAAA-GATTGGGGATAAGTA-TGAGT
815 TCCTAATGAG--GAATGTGCTTATAGCGCCTAATCAC--AAAATGAATGAAGATCATTACT-AGA
* * * * * *** * *
18277 ATTCATGTTTGGCTTATTTA-A-G-A-GAAACTTTGA-TTCTGTCAAAAACAAG-GGAAAGAAAA
875 ATCCATGTTTGTCTCA-TTAGAGGCATG-AACTTAGACTT-T-ACAAAAATTGGTGGGAA-AAAG
* * *
18336 G-TTTTCTTGCGAC
935 GCCTTTCCTGCGAA
* * ** * * * * *
18349 ACCAAAGCATCAATTTCAAGTATCCT-ATTA-AAGGGACAATGTTTTTGGCT-CCTAATCTTGAA
1 ACCAAAACATCAATATCGCGTATCCTAATGAGAA--GACTATGTTTATGG-TGCCTAATCCTAAA
* * ** *
18411 AAGAATGGA-GATT-GTTATGA-GAATCGATG-CTTGTCATA-TTTAGGGGATGAACTTTGATTT
63 AAGAATGGAGGATTAG-TATGACCATTC-ATGTC-TGTCATATTTTA---GACAAACTTTGATTC
* ** * * * * ** * ** * * * *
18471 TCTGGAAAACGAG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCTTTTATCCTA
122 TATCAAAAACG-GTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTA
* * * * ** ** ** * * * *
18535 GTG-AGGAGAATGTGCTTATAGTGTCAAATC-ACAAAATTAATGGCA-ATCGTTACTAGAATCCA
186 TTGAAGG-GAATGTGTTTTTGGTACCAAATCTTGAAAAAGAAT-GTAGATTGTTACGAGAATCGA
* * * * * * * * * *
18597 TGTTTGTCTCATTTAAGGCACGAACTTAGACTCTACA--AAGAT-TGG-AAGGAAAAAGACCTTT
249 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAAGGCAAAG-AAAAGA--TTT
* **** * * * *
18658 -CATGCAAAACCAAAA-CATCAATATTGCGTATCCTAATGAGAAGACTATG-TTAT-GAT-ACT-
310 CCATGCAAAA-GAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATAG-TGCCTA
** * * * * ** * * ** * * *
18717 -T--CAAAA-GAATGGGGATTAGTACGACTATTCATGTTTGTCTTATTTAAAAGACA--AACTTT
371 ATCACAAAATGAATGAAGATCATTGCTAGAATCCAAGTTTGTCCCATTT--GAGGCATGAACTTA
* * * * * * *
18776 GA-TTCCACCAAAAA-CGGT-GGAAAGGAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCGTG
434 GACTT-TA-CAAAAATTGGTGGGAAA--AATGCCTTTCTTGCGAAACCAAAACATCAATATCGTG
* * * *
18838 TATCCTAATGAGAAGATTAAGTTTATGGTGCCTAATCCTGAAAGGAATGGGGATTAATATGACTA
495 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA
* * *
18903 TTCATGTTTGTCTTATTTAAGAGA-AAACTTTGATTCCATCAAAAACGGTGGAAGGAAAGGCTTT
560 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTT
* ** * * * *
18967 TCATGCGACACTGAAGTATCAA---C--GTATCCTATTG-ATGGAATGTGTTTTTGGTTCCCAAT
625 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCAAAT
*
19026 CTTGAAAAGAATGGT-GATTGTTACAAGAATCGATG-TCTGTCTTATTTAAGGGATGAACGTTT-
690 CTTGAAAAGAAT-GTAGATTGTTACGAGAATCGATGCT-TGTCTTATTTAAGGGATGAAC-TTTG
* * * *
19088 ATTTTACGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
752 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTC
* * * *
19153 CTAGTGAGGAGAATGTGCTTATGGCGCCTAATCACAGAATGAATGAAGATCATTACTAGAATCTA
817 CTAATGA-G-GAATGTGCTTATAGCGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* *
19218 TGTTTGTCTCATTTA-AGGCATGAACTTAGACTTTACAAAAAATGGTGGGAAAAAGGCCTTTCTT
880 TGTTTGTCTCA-TTAGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCCT
19282 GCGAA
944 GCGAA
* * *
19287 ACCAAAACATCAATATCGCGTATCCTAAAGGGAAGACTATGTTTATGGTGCTTAATCCTAAAAAG
1 ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
** * *
19352 AATGG-GGGCTAGTTTGACCATTCATGTCTGTCTTATTCTTAGACAAACTTTGATTCCT-TCAAA
66 AATGGAGGATTAGTATGACCATTCATGTCTGTCATATT-TTAGACAAACTTTGATT-CTATCAAA
*
19415 AACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATAGAAGGG
129 AACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGG
* * **
19480 ATTGTGTTTTTGGTACCAAATCTTG-AAAAGAATGTAGATTGTTATGAGAATTTATGCTTGTCTT
194 AATGTGTTTTTGGTACCAAATCTTGAAAAAGAATGTAGATTGTTACGAGAATCGATGCTTGTCTT
* * * *
19544 ATTTAAGGGATGAACTTTGATTTTAGGGAAAATAAGGTAAAGAAAATATTTCCGTGCAAAAGAAA
259 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
*
19609 ATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAA
324 ATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAG
19674 ATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
389 ATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
* ** * *
19739 GAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGCATTTTAAAGAGAATACTATGTTT
454 GAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
* * * * * *
19804 ATGGTGCCTAATACTGAAAAAAATGGGGGTTAGTTTGACCATTCTTGTTTGTCTTATTTAAGAGA
519 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * * * *
19869 CAAACTTTGAATCCGTCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCAATACCAAATCATCAATG
584 CAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
*
19934 TCATGTATCCTATTGAAGGGAATGTGTTTTTGGTAGCAAATCTTGAAAAGAATGTAGATTGTTAC
649 TCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGATTGTTAC
* * ** *
19999 GAGAATTGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTTTGGAAAGTAAGGCAAAGAAAA
714 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
*
20064 GATTTCCATGCAATAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGCGCCT
779 GATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGCGCCT
** * * *
20129 AAAGACAAAATTATTGAAGATCATTAGTAGAATCCATGTTTGTCTCATTAGAGGCATGAACTTAG
844 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTAGAGGCATGAACTTAG
* *
20194 ACTTCACAAAAATTGGTGGGAAAAAGGCCTTTCCTGCAAA
909 ACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCCTGCGAA
* * * * *
20234 ACCAAAACATCAA-ATAGCGAATCCTAA-AAGGAAGGCTATGCTTATGGTGCCTAATCCTAAAAA
1 ACCAAAACATCAATATCGCGTATCCTAATGA-GAAGACTATGTTTATGGTGCCTAATCCTAAAAA
* *
20297 GAATGGAGG-TTAGTTTGACCATTCATGTCTGTCTTATTCTTAGACAAACTTTGATTCCT-TCAA
65 GAATGGAGGATTAGTATGACCATTCATGTCTGTCATATT-TTAGACAAACTTTGATT-CTATCAA
20360 AAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGG
128 AAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGG
* *
20425 GAATGTGTTTTTGGTACC-AATCCT-AAAAAGAATGTAGATTGTTACGAGAATCGATACTTGTCT
193 GAATGTGTTTTTGGTACCAAATCTTGAAAAAGAATGTAGATTGTTACGAGAATCGATGCTTGTCT
* *
20488 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCGTGCAAAAGTA
258 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
*
20553 AATCATTAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAA
323 AATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAA
20618 GATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
388 GATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
* * * *
20683 GGAAAAATGCCTTTCTTGTGAAACCAAAACATCAATATCGTGTATCCTAAAGGGTAGACTATGTT
453 GGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTT
** * * * * * * *
20748 TATGGTGCCTAATTGTAAAAAGAATGGGGGTTAGTTTGACCATTCATGTCTGTATT-CTT---AG
518 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* * * ** * * *
20809 ACAAACATTGATTGCATAAAAAATGGT-GAAAAAAAAGCTTTTTTTGCAACACCAAAGCATCAAT
583 ACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
** * *
20873 GTCATGTATCCTAGAGACGGGGATGTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGATTGTTA
648 GTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGATTGTTA
* * *
20938 CGAGAATCGATGCCTGTCTTATTTAAGGGATGAACTTTGATTTTAGGGAAAATAAGGCCAAGAAA
713 CGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAA
* * * *
21003 AGATTTCCGTGCAAATGAAAATCATCAATATCATTTCACCTAATGAGGAATGTGCTTATAGTGCC
778 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGCGCC
* * * *
21068 TAATCACAAAATGAATAAAGATCATTACTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTA
843 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTAGAGGCATGAACTTA
* * *
21133 GACTTTACAAAAATTGCTGGGAAAAATGCCTTTTCC-GTGAA
908 GACTTTACAAAAATTGGTGGGAAAAAGGCC-TTTCCTGCGAA
* * * *
21174 ACTAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTACGGTGCCTAATCC-AGAAA
1 ACCAAAACATCAATATCGCGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTA-AAA
* * * * *
21237 AGAAT--ATGGATTAGCATGACTATTCATGTTTGTCATATTTAAGAGCCAAACCTTGATTCTATC
64 AGAATGGA-GGATTAGTATGACCATTCATGTCTGTCATATTTTAGA--CAAACTTTGATTCTATC
* * * * * *
21300 AAAAACGGTGGAAAGAAAAGCTTTTCATGCGACACCAGAGCATCAATGTCAAGTATCCTAATAAA
126 AAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAA
* * * * * * * * * *
21365 GGAAATATGTTTTAGGTTCCTAATCTTGTAAATG-ATGGT-GACTGTAACGAGAATCGATGCCCT
191 GGGAATGTGTTTTTGGTACCAAATCTTGAAAAAGAAT-GTAGATTGTTACGAGAATCGATG-CTT
* *
21428 -TCTTATTTAAGGGATGAACTTTGATTATT-AGAAAAAT-AGGACAAAGAAAAGATTTCCATGTA
254 GTCTTATTTAAGGGATGAACTTTGATT-TTAAGGAAAATAAGG-CAAAGAAAAGATTTCCATGCA
* * *
21490 AAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATAGTGCCAAATCACAAAA
317 AAAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAA
* * * * * * * *
21555 TTAACGACGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAA
380 TGAATGAAGATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAA
* * * * *
21620 AATTGGTGGGAAAATTGCCTTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATCAGAGG
445 AATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAG
* *
21685 ACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTTGTATGACTATTCATGTTTGTCTTA
510 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
* *
21750 TTTAAGAGACAAACATTGATTCCATCAAAAA-AGGGGGAAAGAAAAGCTTTTCTTGCGACACCAA
575 TTTAAGAGACAAACTTTGATTCCATCAAAAACA-GTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * * *
21814 AGCATCAATGTCATGTATCGTATTGAAGGGAATGTGCTTTTGGTACCCAATCTTGGAAACAATGG
639 AGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGT
* * *
21879 AGATTGTTGCGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAA-CAG
704 AGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAG
** * *
21943 AGCAAAGAAAAGATTTTGATACAAAAGAAAATCATCAATATCATTTCTCCTAATGA-GAATGGGC
769 -GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGC
* * * * *
22007 TTATAGTGCCTATTCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTTATTTGAGG
833 TTATAGCGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTAGAGG
* * * *
22072 CATGAACTTAGACTTTAAAAAAATTGGTGGG-AAAATGCTTTTCTTGCGAA
898 CATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCCTGCGAA
* * *
22122 ACCGAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAATG
1 ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
* * ** *
22187 AAAGG-GGATTAGTAAGAGTATTCATGTTTGTCATATTTTAGAGACAAACTTTGATTCTATCAAA
66 AATGGAGGATTAGTATGACCATTCATGTCTGTCATATTTT--AGACAAACTTTGATTCTATCAAA
* *
22251 AACAAG-GGAAAGAAAAG-TTTTCTTGCTGTCACCAAAGCATCAATGTCATGTATCCTATTGAAG
129 AAC-GGTGGAAAGAAAAGCTTTTCTTG-TGACACCAAAGCATCAATGTCATGTATCCTATTGAAG
*** * * *
22314 GGGCGGTGTTTTTGGCT-CGC-AATCTTGAAAAA-AGTGGAGATTGTTATGAGAATCGATGCTTG
192 GGAATGTGTTTTTGG-TAC-CAAATCTTGAAAAAGAATGTAGATTGTTACGAGAATCGATGCTTG
* * * * * *
22376 TCTTCTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCAAAGAAACGATATCCATGCAAAA
255 TCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
** * *
22441 GAAAATCATCAATATCATTTCTCCTAACAAGGAATATGCTTATAGTGCCTAATTACAAAATGAAT
320 GAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
* * * * * *
22506 GAAGATCGTTGCTGGAATCCATGTTTGTCTCATTTGAAGCATGAATTTAGACTTTACAAAAATTG
385 GAAGATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * * * * *
22571 GTGGGAAAAAGGCTTTTCATGCGGAACCAAAACATCAACATTGCGTATCCTAATGAGAAGACTAT
450 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAT
* * * * *
22636 GTTTATGGTGCCTAATCCTGAAAAGAGTGGGGATTCGCATGACTATTCATGCTTGGCTTATTTAA
515 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* *
22701 GAGACAAACTTTGATTCCATCAAAAACAGTGGAGAGGAAAGCTTTTCTTGCGACACCAAAGCATC
580 GAGACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
*
22766 AATGTCGTGTATCCTA
645 AATGTCATGTATCCTA
22782 ATGAGTACAC
Statistics
Matches: 4289, Mismatches: 819, Indels: 478
0.77 0.15 0.09
Matches are distributed among these distances:
910 2 0.00
911 6 0.00
912 51 0.01
913 30 0.01
914 180 0.04
915 54 0.01
916 84 0.02
917 28 0.01
918 105 0.02
919 1 0.00
922 1 0.00
925 1 0.00
926 1 0.00
927 1 0.00
928 6 0.00
929 21 0.00
930 69 0.02
931 11 0.00
932 18 0.00
933 50 0.01
934 14 0.00
935 17 0.00
936 160 0.04
937 166 0.04
938 129 0.03
939 52 0.01
940 374 0.09
941 142 0.03
942 260 0.06
943 209 0.05
944 90 0.02
945 561 0.13
946 467 0.11
947 150 0.03
948 291 0.07
949 265 0.06
950 222 0.05
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.30
Consensus pattern (948 bp):
ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
AATGGAGGATTAGTATGACCATTCATGTCTGTCATATTTTAGACAAACTTTGATTCTATCAAAAA
CGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAA
TGTGTTTTTGGTACCAAATCTTGAAAAAGAATGTAGATTGTTACGAGAATCGATGCTTGTCTTAT
TTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
CATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGAT
CATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGA
AAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTAT
GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
AACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
ATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGATTGTTACGA
GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA
TTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGCGCCTAA
TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTAGAGGCATGAACTTAGAC
TTTACAAAAATTGGTGGGAAAAAGGCCTTTCCTGCGAA
Found at i:22853 original size:474 final size:474
Alignment explanation
Indices: 18807--22781 Score: 5117
Period size: 474 Copynumber: 8.4 Consensus size: 474
18797 AAGGAAAGCT
* * * * * *
18807 TTTCTTGCGATACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGATTAAGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* *
18872 ATCCTGAAAGGAATGGGGATTAATATGACTATTCATGTTTGTCTTATTTAAGAGA-AAACTTTGA
66 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * ** *
18936 TTCCATCAAAAACGGTGGAAGGAAAGGCTTTTCATGCGACACTGAAGTATCAA---C--GTATCC
131 TTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * *
18996 TATTG-ATGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGTGATTGTTACAAGAATCGAT
196 TATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGAT
* * *
19060 G-TCTGTCTTATTTAAGGGATGAACGTTT-ATTTTACGAAAAATAGGGCAAAGAAAAGATTTCCA
261 GCT-TGTCTTATTTAAGGGATGAAC-TTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCA
* * * *
19123 TGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATGGCGCCTAATCAC
324 TGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCAC
* * *
19188 AGAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTA
387 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA
*
19253 CAAAAAATGGTGGGAAAAAGGCC
452 CAAAAATTGGTGGGAAAAAGGCC
* * *
19276 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGGGAAGACTATGTTTATGGTGCTTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* ** * * * *
19341 ATCCTAAAAAGAATGGGGGCTAGTTTGACCATTCATGTCTGTCTTATTCT--TAGACAAACTTTG
66 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT-TAAGAGACAAACTTTG
* *
19404 ATTCCTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
130 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * **
19469 CTATAGAAGGGATTGTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGATTGTTATGAGAATTTA
195 CTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGA
* * * *
19534 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGGAAAATAAGGTAAAGAAAATATTTCCGT
260 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAT
19599 GCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAA
325 GCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAA
* * * *
19664 ATGAATGAAAATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAA
390 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAA
*
19729 AAATTGGTGGGAAAAATGCC
455 AAATTGGTGGGAAAAAGGCC
* * ** * *
19749 TTTCTTGCGAAACCAAAACATCAATATCGTGCATTTTAAAGAGAATACTATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * * * * *
19814 ATACTGAAAAAAATGGGGGTTAGTTTGACCATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGA
66 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * *
19879 ATCCGTCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCAATACCAAATCATCAATGTCATGTATCC
131 TTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * *
19944 TATTGAAGGGAATGTGTTTTTGGTAGCAAATCTTGAAAAGAATGTAGATTGTTACGAGAATTGAT
196 TATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGAT
* ** *
20009 GCTTGTCTTATTTAGGGGATGAACTTTGATTTTTTGGAAAGTAAGGCAAAGAAAAGATTTCCATG
261 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATG
* * **
20074 CAATAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGCGCCTAAAGACAAAA
326 CAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAA
* * * * *
20139 TTATTGAAGATCATTAGTAGAATCCATGTTTGTCTCATTAGAGGCATGAACTTAGACTTCACAAA
391 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
20204 AATTGGTGGGAAAAAGGCC
456 AATTGGTGGGAAAAAGGCC
* * * * * * *
20223 TTTCCTGCAAAACCAAAACATCAA-ATAGCGAATCCTAA-AAGGAAGGCTATGCTTATGGTGCCT
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGA-GAAGACTATGTTTATGGTGCCT
* * * * *
20286 AATCCTAAAAAGAATGGAGG-TTAGTTTGACCATTCATGTCTGTCTTATTCT--TAGACAAACTT
65 AATCCTGAAAAGAATGG-GGATTAGTATGACTATTCATGTTTGTCTTATT-TAAGAGACAAACTT
* *
20348 TGATTCCTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTA
128 TGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * *
20413 TCCTATTGAAGGGAATGTGTTTTTGGTACC-AATCCTAAAAAGAATGTAGATTGTTACGAGAATC
193 TCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATC
*
20477 GATACTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCC
258 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCC
* * *
20542 GTGCAAAAGTAAATCATTAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACA
323 ATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACA
* * *
20607 AAATGAATGAAGATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTAC
388 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTAC
*
20672 AAAAATTGGTGGGAAAAATGCC
453 AAAAATTGGTGGGAAAAAGGCC
* * * * *
20694 TTTCTTGTGAAACCAAAACATCAATATCGTGTATCCTAAAGGGTAGACTATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
** * * * * * * * *
20759 ATTGTAAAAAGAATGGGGGTTAGTTTGACCATTCATGTCTGTATT-CTT---AGACAAACATTGA
66 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * *
20820 TTGCATAAAAAATGGT-GAAAAAAAAGCTTTTTTTGCAACACCAAAGCATCAATGTCATGTATCC
131 TTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
** * * *
20884 TAGAGACGGGGATGTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGATTGTTACGAGAATCGAT
196 TATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGAT
* * * *
20949 GCCTGTCTTATTTAAGGGATGAACTTTGATTTTAGGGAAAATAAGGCCAAGAAAAGATTTCCGTG
261 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATG
* *
21014 CAAATGAAAATCATCAATATCATTTCACCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAA
326 CAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAA
* * *
21079 TGAATAAAGATCATTACTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAA
391 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
* *
21144 AATTGCTGGGAAAAATGCC
456 AATTGGTGGGAAAAAGGCC
* * * * * *
21163 TTT-TCCGTGAAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTACGGTGCC
1 TTTCT-TGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAG-ACTATGTTTATGGTGCC
* ** * * * *
21226 TAATCCAGAAAAGAATATGGATTAGCATGACTATTCATGTTTGTCATATTTAAGAGCCAAACCTT
64 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * *
21291 GATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCATGCGACACCAGAGCATCAATGTCAAGTAT
129 GATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * * * * * * * *
21356 CCTAATAAAGGAAATATGTTTTAGGTTCCTAATCTTGTAAATG-ATGGTGACTGTAACGAGAATC
194 CCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTG-AAAAGAATGGAGATTGTTACGAGAATC
* *
21420 GATGCCCT-TCTTATTTAAGGGATGAACTTTGATTATT-AGAAAAAT-AGGACAAAGAAAAGATT
258 GATG-CTTGTCTTATTTAAGGGATGAACTTTGATT-TTAAGGAAAATAAGG-CAAAGAAAAGATT
* * * *
21482 TCCATGTAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATAGTGCCAAA
320 TCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAA
* * * * *
21547 TCACAAAATTAACGACGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGAC
383 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGAC
**
21612 TTTACAAAAATTGGTGGGAAAATTGCC
448 TTTACAAAAATTGGTGGGAAAAAGGCC
* * * *
21639 TTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATCAGAGGACTATGTTTATGGTGCCAA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* *
21704 ATCCTGAAAAGAATGGGGATTTGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACATTGA
66 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
21769 TTCCATCAAAAAAGGGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCG
131 TTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * *
21834 TATTGAAGGGAATGTGCTTTTGGTACCCAATCTTGGAAACAATGGAGATTGTTGCGAGAATCGAT
196 TATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGAT
* * **
21899 GCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAA-CAGAGCAAAGAAAAGATTTTGAT
261 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTCCAT
* * *
21963 ACAAAAGAAAATCATCAATATCATTTCTCCTAATGA-GAATGGGCTTATAGTGCCTATTCACAAA
325 GCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAA
* * *
22027 ATGAATGAAGATCATTACTAGAATCTATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTAAAA
390 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAA
* *
22092 AAATTGGTGGG-AAAATGCT
455 AAATTGGTGGGAAAAAGGCC
* *
22111 TTTCTTGCGAAACCGAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * * * *
22176 ATCCT-AAAATGAAAGGGGATTAGTAAGAGTATTCATGTTTGTCATATTTTAGAGACAAACTTTG
66 ATCCTGAAAA-GAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * *
22240 ATTCTATCAAAAACAAG-GGAAAGAAAAG-TTTTCTTGCTGTCACCAAAGCATCAATGTCATGTA
130 ATTCCATCAAAAAC-GGTGGAAAGAAAAGCTTTTCTTGC-GACACCAAAGCATCAATGTCATGTA
*** *
22303 TCCTATTGAAGGGGCGGTGTTTTTGGCT-CGC-AATCTTGAAAA-AAGTGGAGATTGTTATGAGA
193 TCCTATTGAAGGGAATGTGTTTTTGG-TAC-CAAATCTTGAAAAGAA-TGGAGATTGTTACGAGA
* * * * * *
22365 ATCGATGCTTGTCTTCTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCAAAGAAACGATA
255 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATT
** * *
22430 TCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAACAAGGAATATGCTTATAGTGCCTAATT
320 TCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATC
* * * * *
22495 ACAAAATGAATGAAGATCGTTGCTGGAATCCATGTTTGTCTCATTTGAAGCATGAATTTAGACTT
385 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTT
*
22560 TACAAAAATTGGTGGGAAAAAGGCT
450 TACAAAAATTGGTGGGAAAAAGGCC
* * * *
22585 TTTCATGCGGAACCAAAACATCAACATTGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * * * *
22650 ATCCTGAAAAGAGTGGGGATTCGCATGACTATTCATGCTTGGCTTATTTAAGAGACAAACTTTGA
66 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * *
22715 TTCCATCAAAAACAGTGGAGAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCC
131 TTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
22780 TA
196 TA
22782 ATGAGTACAC
Statistics
Matches: 3061, Mismatches: 394, Indels: 97
0.86 0.11 0.03
Matches are distributed among these distances:
468 71 0.02
469 497 0.16
470 6 0.00
471 266 0.09
472 472 0.15
473 489 0.16
474 695 0.23
475 166 0.05
476 397 0.13
477 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (474 bp):
TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
TTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
TATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGAT
GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATG
CAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAA
TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
AATTGGTGGGAAAAAGGCC
Found at i:23707 original size:472 final size:472
Alignment explanation
Indices: 22741--23874 Score: 1702
Period size: 472 Copynumber: 2.4 Consensus size: 472
22731 GGAGAGGAAA
* * **
22741 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGTACACTAAGTTTATGGTGC
1 GCTTTTCTTGCGAAACCAAAACATCAATGTCGTGTATCCTAATGAG-AGGCTAAGTTTATGGTGC
*
22806 CTAATCATGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTT
65 CTAATCATGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
22871 TGATTCTATCAAACACGGAGGAAAGAAAAGTTTTCTTGCGACACCAAAGCACCAATGTCAAGTAT
130 TGATTCTATAAAAAACGGAGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTAT
*
22936 CCTATTAAAGGGACAGTGTTTTCTACTCCCAATCTTGAAAAGAATGGAAATTGTTATGAGAATCG
195 CCTATTAAAGGGACAGTGTTTTCTACTCCCAATCTTGAAAAGAATGGAAATTGTTACGAGAATCG
23001 ATACTTGTGTTATTTAGGGGATGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGAATTCCA
260 ATACTTGTGTTATTTAGGGGATGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGAATTCCA
23066 TGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAA
325 TGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAA
* *
23131 AATGAATGAAGATAATTACTAGAATTCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACA
390 AATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTAAGGCATGAACTTAGACTTTACA
*
23196 AAAAATGGTGGGAAAAAT
455 AAAAATGGTGGGAAAAAG
* ** * * *
23214 GCTTTTCTTGCGAAA-CAAAACATCAATATCGCCTATCTTAATGGGAAGGCTAAGTTTATTGTGC
1 GCTTTTCTTGCGAAACCAAAACATCAATGTCGTGTATCCTAATGAG-AGGCTAAGTTTATGGTGC
* * * * * *
23278 CTAATCTTGAAAAGAATAGGAATTAGTATCAGTATTCATATTTGTCTTATGTAAGAGACAAACTT
65 CTAATCATGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * **
23343 TGATTCTATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATTTCTTGTAT
130 TGATTCTATAAAAAACGGAGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTAT
* * * * *
23408 CCTATTGAAGGGCCGGTGTTTT-TGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATC
195 CCTATTAAAGGGACAGTGTTTTCT-ACTCCCAATCTTGAAAAGAATGGAAATTGTTACGAGAATC
* * * * *
23472 GATGCTTGTTTTATTTA-GGGTTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCC
259 GATACTTGTGTTATTTAGGGGATGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGAATTCC
*
23536 ATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCCCA
324 ATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACA
*
23601 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTAAGGCATGAACTTAGACTTTAC
389 AAATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTAAGGCATGAACTTAGACTTTAC
*
23666 AAAAATTGGTGGGAAAAAG
454 AAAAAATGGTGGGAAAAAG
* *
23685 GCTTTTCTTGCGAAACCAAAACATCAATGTCATGTATCCTAGTGAGAGGAC-AATGTTTATGGTG
1 GCTTTTCTTGCGAAACCAAAACATCAATGTCGTGTATCCTAATGAGAGG-CTAA-GTTTATGGTG
* * * *
23749 CCTAATCCA-AAAAATAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAAC
64 CCTAAT-CATGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * * *
23813 TTTGATTCCATAAAAAATGGTGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
128 TTTGATTCTATAAAAAACGGAGGAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTC
23875 GTGCATCCTA
Statistics
Matches: 588, Mismatches: 67, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
471 208 0.35
472 338 0.57
473 42 0.07
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (472 bp):
GCTTTTCTTGCGAAACCAAAACATCAATGTCGTGTATCCTAATGAGAGGCTAAGTTTATGGTGCC
TAATCATGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
GATTCTATAAAAAACGGAGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATC
CTATTAAAGGGACAGTGTTTTCTACTCCCAATCTTGAAAAGAATGGAAATTGTTACGAGAATCGA
TACTTGTGTTATTTAGGGGATGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGAATTCCAT
GCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAA
ATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTAAGGCATGAACTTAGACTTTACAA
AAAATGGTGGGAAAAAG
Found at i:24490 original size:626 final size:622
Alignment explanation
Indices: 23195--24509 Score: 1708
Period size: 626 Copynumber: 2.1 Consensus size: 622
23185 TAGACTTTAC
* * * * * * * * *
23195 AAAAAATGGTGG-GAAAAATGCTTTTCTTGCGAAACAAAACATCAATATCG-CCTATCTTAATGG
1 AAAAAACGGTGGAAAAAAAAGCTTTTCTTGCGAACCAAAGCATCAATGTCGTGC-ATCCTAATGA
* * ** *
23258 GAAGGCTAAGTTTATTGTGCCTAATCTTGAAAAGAATAGGAATTAGTATCAGTATTCATATTTGT
65 GAAGACTAAGTTTATGGTGCCTAATCTAAAAAAGAATAGGAATAAGTATCAGTATTCATATTTGT
* * * *
23323 CTTATGTAAGAGACAAACTTTGATTCTATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACC
130 CTTATGTAAAAGACAAACTTTGATTCCATAAAAAACGGGAGAAAGAAAAGTTTTCTTATGACACC
* ** * * *
23388 AAAGCATCAATTTCTTGTATCCTATTGAAGGGCCGGTGTTTTTGGCTCCCAATCTTGAAAAGAAT
195 AAAGCATCAATGTCAAGTATCCTATTGAAGCGACGGGGTTTTTGGCTCCCAATCTTGAAAAGAAT
* * *
23453 GGAGATTGTTACGAGAATCGATGCTTGTTTTATTTAGGGTTGAACTTTGATTTTATGGAAAATAA
260 GGAGATTGTTACGAGAATCGATGCTTATCTTATTTAGGGATGAACTTTGATTTTAT-----AT-A
* *
23518 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGC
319 GG--AAGAAAAGATTTCCATCCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAATGTGC
* *
23583 TTATAGTGCCTAATCCCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTAAGG
382 TTATAGCGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTAAGG
* * * * *
23648 CATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCTTTTCTTGCGAAACCAAAACATCAAT
447 CACGAACATAGACTTTACAAAAATTAGTGGGAAAAAGGCCTTTCTTACGAAACCAAAACATCAAT
* * * * *
23713 GTCATGTATCCTAGTGAGAGGACAATGTTTATGGTGCCTAATCCAAAAAATAATGGGGATTAGTA
512 ATCACGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTA
23778 TGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCAT
577 TGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCAT
* **
23824 AAAAAATGGTGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGA
1 AAAAAACGGTGGAAAAAAAAGCTTTTCTTGCGA-ACCAAAGCATCAATGTCGTGCATCCTAATGA
* * * * *
23889 GAAGACTAAGTTTATGGTGCTTAATCCTAAAAAAGAATGGGGATAAGTATGAGTATTCATGTTTG
65 GAAGACTAAGTTTATGGTGCCTAAT-CTAAAAAAGAATAGGAATAAGTATCAGTATTCATATTTG
*
23954 TCTTATTTAAAAGACAAACTTTGATTCCATAAAAAACGGGAGAAAGAAAAGTTTTCTTATGACAC
129 TCTTATGTAAAAGACAAACTTTGATTCCATAAAAAACGGGAGAAAGAAAAGTTTTCTTATGACAC
* *
24019 CAAAGCATCAATGTCAAGTATCCTATTGATGCGACGGGGTTTTTTGCTCCCAATCTTGAAAAGAA
194 CAAAGCATCAATGTCAAGTATCCTATTGAAGCGACGGGGTTTTTGGCTCCCAATCTTGAAAAGAA
24084 TGGAGATTGTTACGAGAATCGATGCTTATCTTATTTAGGGGATGAACTTTGATTTT-T-T-GG-A
259 TGGAGATTGTTACGAGAATCGATGCTTATCTTATTTA-GGGATGAACTTTGATTTTATATAGGAA
* *
24145 GAAAAGATTTCCATCCAAAAGAAAATCATCAATATCATTTATCCTAGTGCGGAGAATGTGCTCAT
323 GAAAAGATTTCCATCCAAAAGAAAATCATCAATATCATTTATCCTAATG-AG-GAATGTGCT--T
* * ***
24210 CATAGCGCCTAATCACAAAATTAATGATGATCATTACTAGAATCCATGTTTGTCTTGTTTAAGGC
384 -ATAGCGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTAAGGC
* ** *
24275 ACGAACATAGACTTTACAAAATTTAGTGGGAAAATTGCCTTTCTTACGAATCCAAAACATCAATA
448 ACGAACATAGACTTTACAAAAATTAGTGGGAAAAAGGCCTTTCTTACGAAACCAAAACATCAATA
* * * *** *
24340 TCGCGTATCCTAATGGGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTAT
513 TCACGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTAT
* * *
24405 GGCTCTTCATGTTTGTCTTATTTAAGAG-TCAAACTTTGATTTCAT
578 GACTATTCATGTTTGTCTTATTTAAGAGAT-AAACTTTGATTCCAT
* * * * *
24450 CAAAAACGTTGGAAAAAAAAGCTTTTCTTGCGATACCAAAGCAACAATGTCATGTATCCT
1 AAAAAACGGTGGAAAAAAAAGCTTTTCTTGCGA-ACCAAAGCATCAATGTCGTGCATCCT
24510 GTTGAAGCGA
Statistics
Matches: 595, Mismatches: 80, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
621 47 0.08
622 1 0.00
623 9 0.02
624 2 0.00
625 2 0.00
626 258 0.43
629 12 0.02
630 16 0.03
631 45 0.08
632 186 0.31
633 17 0.03
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.32
Consensus pattern (622 bp):
AAAAAACGGTGGAAAAAAAAGCTTTTCTTGCGAACCAAAGCATCAATGTCGTGCATCCTAATGAG
AAGACTAAGTTTATGGTGCCTAATCTAAAAAAGAATAGGAATAAGTATCAGTATTCATATTTGTC
TTATGTAAAAGACAAACTTTGATTCCATAAAAAACGGGAGAAAGAAAAGTTTTCTTATGACACCA
AAGCATCAATGTCAAGTATCCTATTGAAGCGACGGGGTTTTTGGCTCCCAATCTTGAAAAGAATG
GAGATTGTTACGAGAATCGATGCTTATCTTATTTAGGGATGAACTTTGATTTTATATAGGAAGAA
AAGATTTCCATCCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAATGTGCTTATAGCGC
CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTAAGGCACGAACAT
AGACTTTACAAAAATTAGTGGGAAAAAGGCCTTTCTTACGAAACCAAAACATCAATATCACGTAT
CCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGACTATTC
ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCAT
Found at i:26304 original size:157 final size:159
Alignment explanation
Indices: 26019--26307 Score: 379
Period size: 158 Copynumber: 1.8 Consensus size: 159
26009 TGTTTATGAT
* * *
26019 ATCCTCAAAAGAATGAGGATTAGTACGACTATTCATTTTTGTCTTATTTGAAAGATAAACTTTGA
1 ATCCTCAAAAAAATGAGGATTAGTACGACTATTCATGTTTGTCTTATTTGAAAGACAAACTTTGA
* * * *
26084 TTCCACCAAAAACGATGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
66 TTCCACCAAAAACGAGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCAAGTATCC
26149 TAATGAGAAGATTAAGTTTATGGTGCCTA
131 TAATGAGAAGATTAAGTTTATGGTGCCTA
* * ** * * *
26178 ATCCTGAAAAAAATGGGGATTAGTGTGAGTATTCATGTTTG-CTTATTT-AAGAGGCAAGCTTTG
1 ATCCTCAAAAAAATGAGGATTAGTACGACTATTCATGTTTGTCTTATTTGAA-AGACAAACTTTG
* * *
26241 ATTCTATCAAAAATGAGGGAAAGAAAAG-TTTTCTTGCAACACCAAAGCATCAATG-CTAAGTAT
65 ATTCCACCAAAAACGAGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTC-AAGTAT
26304 CCTA
129 CCTA
26308 TTGAAGGGAG
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
156 1 0.01
157 37 0.33
158 39 0.35
159 34 0.31
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (159 bp):
ATCCTCAAAAAAATGAGGATTAGTACGACTATTCATGTTTGTCTTATTTGAAAGACAAACTTTGA
TTCCACCAAAAACGAGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCAAGTATCC
TAATGAGAAGATTAAGTTTATGGTGCCTA
Found at i:26350 original size:157 final size:158
Alignment explanation
Indices: 26019--27410 Score: 375
Period size: 158 Copynumber: 8.8 Consensus size: 158
26009 TGTTTATGAT
* * * *
26019 ATCCTCAAAAGAATGAGGATTAGTACGACTATTCATTTTTGTCTTATTTGAAAGATAAACTTTGA
1 ATCCTGAAAAGAATGGGGATTAGTACGACTATTCATGTTTGTCTTATTTGAAAGACAAACTTTGA
* * * *
26084 TTCCACCAAAAACGATGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
66 TTCCACCAAAAACGAGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCAAGTATCC
*
26149 TAATGAGAAGATTAAGTTTATGGTGCCTA
131 TAATGAGAAGAGT-AGTTTATGGTGCCTA
* ** * * *
26178 ATCCTGAAAAAAATGGGGATTAGTGTGAGTATTCATGTTTG-CTTATTT-AAGAGGCAAGCTTTG
1 ATCCTGAAAAGAATGGGGATTAGTACGACTATTCATGTTTGTCTTATTTGAA-AGACAAACTTTG
* * *
26241 ATTCTATCAAAAATGAGGGAAAGAAAAG-TTTTCTTGCAACACCAAAGCATCAATG-CTAAGTAT
65 ATTCCACCAAAAACGAGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTC-AAGTAT
* * * *
26304 CCTATTGAAGGGAGAGT-GTTTTTGGCTTCC-A
129 CCTAATG-A-GAAGAGTAGTTTATGG-TGCCTA
* * * * ** * * **
26335 ATCTTGAAATGAATGGAGATT-GTTACGA-GAACCGATGCTTGTCTT-TTT-AAGGGGATGAACT
1 ATCCTGAAAAGAATGGGGATTAG-TACGACTATTC-ATGTTTGTCTTATTTGAA--AGACAAACT
** * ** ** * * * * ** * * **
26396 TTGATTTTA-TAGAAAATAAGTCAGAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATT
62 TTGATTCCACCA-AAAACGAGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCAAG
* * *
26460 TCTCCTAAT---AAG-GT-GCTTATAGTGCCTA
126 TATCCTAATGAGAAGAGTAGTTTATGGTGCCTA
** * * ** * ** *
26488 ATCAC--AAAATGAATGAAG-TTATTACTAGAATCCATGTTTGTCCCATTTG--AGGCATGAACT
1 ATC-CTGAAAA-GAATGGGGATTAGTACGACTATTCATGTTTGTCTTATTTGAAAGACA--AACT
* * * * * * *
26548 TAGACTT-TA-CAAAAATTG-GCAGG-AA-AAAGGCCTTTCTTGCGAA-ACCAAAACATCAATAT
62 TTGA-TTCCACCAAAAA-CGAG--GGAAAGAAAAGCTTTTCTTGC-AACACCAAAGCATCAATGT
* * * *
26607 CGCA-TATCCTAAAGAGAAGACTATGTTTACGGTGCCTA
122 C-AAGTATCCTAATGAGAAGAGTA-GTTTATGGTGCCTA
* * * * *
26645 ATCCTAAAAAGAATGAGGATTAGTATGACTATTAATGTTTGTCTTATTT-AGGAGACAAACTTTG
1 ATCCTGAAAAGAATGGGGATTAGTACGACTATTCATGTTTGTCTTATTTGA-AAGACAAACTTTG
* *
26709 ATTCCATCAAAAAC-AGGGAAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCAAGTAT
65 ATTCCACCAAAAACGAGGG-AAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCAAGTAT
* * * ** * *
26772 CCTATTTA-AGGGACAATGTTTTTGGCT-CCCA
129 CCTAATGAGA-AGAGTA-GTTTATGG-TGCCTA
* * * * * * * * ** **
26803 ATCTTGAAAAGATTAGAGATT-GTTACGA-GAATCGGTGCTTGTCTTATTT-AGGGGATGAACTT
1 ATCCTGAAAAGAATGGGGATTAG-TACGACTATTC-ATGTTTGTCTTATTTGA-AAGACAAACTT
** *** ** * * * * * ** * * ***
26865 TGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCTTTTA
63 TGATTCCACCAAAAACGAGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCAAGTA
* * * *
26930 TCCTAGTGAGGAGAATGTA-ATTATAGTGCCTA
128 TCCTAATGAGAAG-A-GTAGTTTATGGTGCCTA
* ** * * * ** * * * * *
26962 ATCAC--AAAATTAATGGCAATCATTACTAGAATCCATGTTTGCCTCATTT-AAGGCACGAACTT
1 ATC-CTGAAAA-GAATGGGGATTAGTACGACTATTCATGTTTGTCTTATTTGAAAG-ACAAACTT
* * * * * * * * * *
27024 AGACTT-TA-CAAAAATTGGGGGGAA-AAATGCCTTTCTTGCGAA-ACCAAAACATCAATATCAC
63 TGA-TTCCACCAAAAA-CGAGGGAAAGAAAAGCTTTTCTTGC-AACACCAAAGCATCAATGTCAA
* * * *
27085 GTATCCCAAAGGGAAGACTATGTTTATGGTGCCTA
125 GTATCCTAATGAGAAGAGTA-GTTTATGGTGCCTA
* * ** * * * *
27120 ATCCTAAAAAGAATGGAGG-TTGGTTTGACCATTCATGTCTGTCATATTCT--TAGACAAACTTT
1 ATCCTGAAAAGAATGG-GGATTAGTACGACTATTCATGTTTGTCTTATT-TGAAAGACAAACTTT
** * * * * **
27182 GATTCCTTCAAAAATG-GTGAAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTA
64 GATTCCACCAAAAACGAG-GGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCAAGTA
* *
27246 TCCAAATGAGAAGACTAAGTTTATGGTGCCTA
128 TCCTAATGAGAAGAGT-AGTTTATGGTGCCTA
* * * ***** *
27278 ATCCTGAAAAGAATGGGGATAAGTATGAGTATATTCATAAACATCTTATGT-AAGAGACAAACTT
1 ATCCTGAAAAGAATGGGGATTAGTACGA--CTATTCATGTTTGTCTTATTTGAA-AGACAAACTT
*** **
27342 TGATTCCGTTAAAAAC-AGGGGAAAGAAAAG-TTTTCTTGTGACACCAAAGCATCAATGTCAAGT
63 TGATTCCACCAAAAACGA-GGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCAAGT
27405 ATCCTA
127 ATCCTA
27411 TTTAAGGGAC
Statistics
Matches: 884, Mismatches: 265, Indels: 167
0.67 0.20 0.13
Matches are distributed among these distances:
150 1 0.00
151 37 0.04
152 34 0.04
153 26 0.03
154 5 0.01
155 1 0.00
156 12 0.01
157 127 0.14
158 382 0.43
159 169 0.19
160 56 0.06
161 33 0.04
162 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (158 bp):
ATCCTGAAAAGAATGGGGATTAGTACGACTATTCATGTTTGTCTTATTTGAAAGACAAACTTTGA
TTCCACCAAAAACGAGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCAAGTATCC
TAATGAGAAGAGTAGTTTATGGTGCCTA
Found at i:26742 original size:158 final size:159
Alignment explanation
Indices: 26580--27851 Score: 438
Period size: 158 Copynumber: 8.0 Consensus size: 159
26570 GAAAAAGGCC
*
26580 TTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAAGAGAAGACTATGTTTACGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
*
26645 ATCCTAAAAAGAATGAGGATTAGTATGACTATTAATGTTTGTCTTATTTAGGAGACAAACTTTGA
66 ATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGA
26710 TTCCATCAAAAACAGGGAAAAGAAAAG-T
131 TTCCATCAAAAACAGGGAAAAGAAAAGCT
* * * * * *
26738 TTTCTTGCGACACCAAAGCATCAATGTC-AAGTATCCTATTTAAG-G--GACAATGTTTTTGGCT
1 TTTCTTGCGAAACCAAAACATCAATATCGCA-TATCCTA---AAGAGAAGACTATGTTTATGG-T
* * * * * * * * * * **
26799 -CCCAATCTTGAAAAG-ATTAGAGATT-GTTACGA-GAATCGGTGCTTGTCTTATTTAGGGGATG
61 GCCTAATCCTAAAAAGAATGAG-GATTAG-TATGACTATTC-ATGTTTGTCTTATTTAGGAGACA
** ** * * * *
26860 AACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGAT
123 AACTTTGATTCCATCAAAAACAGGGAAAAGAAAAGCT
* * ** *** ** * *
26897 TTCCATGC-AAAAGAAAATCATCAATATCTTTTATCCTAGTGAGGAGA--ATGTAATTATAGTGC
1 TTTCTTGCGAAACCAAAA-CATCAATATCGCATATCCTAAAGAGAAGACTATGT--TTATGGTGC
** * * * * * * * *
26959 CTAATCAC-AAAATTAATG-GCAATCATTACTAGA--ATCCATGTTTGCCTCATTTAAGG-CACG
63 CTAATC-CTAAAAAGAATGAG-GATTAGTA-T-GACTATTCATGTTTGTCTTATTT-AGGAGACA
* * ** ** * *
27019 AACTTAGACTT-TA-CAAAAATTGGGGGGAA-AAATGCC
123 AACTTTGA-TTCCATCAAAAA-CAGGGAAAAGAAAAGCT
* * * *
27055 TTTCTTGCGAAACCAAAACATCAATATCACGTATCCCAAAGGGAAGACTATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
* * * * * *
27120 ATCCTAAAAAGAATGGAGG-TTGGTTTGACCATTCATGTCTGTCATATTCT--TAGACAAACTTT
66 ATCCTAAAAAGAAT-GAGGATTAGTATGACTATTCATGTTTGTCTTATT-TAGGAGACAAACTTT
* * *
27182 GATTCCTTCAAAAA-TGGTGAAAAGGAAAGCT
129 GATTCCATCAAAAACAGG-GAAAAGAAAAGCT
* * * ** *
27213 TTTCTTGCGACACCAAAGCATCAATGTCGTGTATCC-AAATGAGAAGACTAAGTTTATGGTGCCT
1 TTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAA-GAGAAGACTATGTTTATGGTGCCT
* * * * ***** * *
27277 AATCCTGAAAAGAATGGGGATAAGTATGAGTATATTCATAAACATCTTATGTAAGAGACAAACTT
65 AATCCTAAAAAGAATGAGGATTAGTATGA--CTATTCATGTTTGTCTTATTTAGGAGACAAACTT
* * *
27342 TGATTCCGTTAAAAACAGGGGAAAGAAAAG-T
128 TGATTCCATCAAAAACAGGGAAAAGAAAAGCT
* * * * * * *
27373 TTTCTTGTGACACCAAAGCATCAATGTC-AAGTATCCTATTTAAG-G--GACAATGTTTTTGGCT
1 TTTCTTGCGAAACCAAAACATCAATATCGCA-TATCCTA---AAGAGAAGACTATGTTTATGG-T
* * * * * * * * * **
27434 -CCCAATCTTGAAAAGATAGGA-GATT-GTTACGA-GAATCAATGCTTGTCTTATTTAGGGGATG
61 GCCTAATCCTAAAAAGA-ATGAGGATTAG-TATGACTATTC-ATGTTTGTCTTATTTAGGAGACA
** * * * * *
27495 AACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGAT
123 AACTTTGATTCCATCAAAAACAGGGAAAAGAAAAGCT
* * * ** *** ** * * * * * *
27532 TTCCATAC-AAAAGAAAATCATCAATATCTTTTATCCTAGTGAGGAGAATGTGCTTATAGCGCCT
1 TTTCTTGCGAAACCAAAA-CATCAATATCGCATATCCTAAAGAGAAGACTATGTTTATGGTGCCT
** * * * * * * *
27596 AATCAC-AAAATTAATG-GCAATCATTACTAGA--ATCCATGTTTGTCTCATTTAAGG-CACGAA
65 AATC-CTAAAAAGAATGAG-GATTAGTA-T-GACTATTCATGTTTGTCTTATTT-AGGAGACAAA
* * ** ** * *
27656 CTTAGACTT-TA-CAAAAATTGGTGGGAA-AAATGCC
125 CTTTGA-TTCCATCAAAAACAGG-GAAAAGAAAAGCT
*
27690 TTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
* * * * * *
27755 ATCTTGAAAGGAATG-GAGATTAGTATGACTATTCGTGTTTGTCTTGTTTAAGAGACAAACTTTG
66 ATCCTAAAAAGAATGAG-GATTAGTATGACTATTCATGTTTGTCTTATTTAGGAGACAAACTTTG
* *
27819 ATTCCATCAAAAAC-GGTGGAAGGAAAAGCT
130 ATTCCATCAAAAACAGG-GAAAAGAAAAGCT
27849 TTT
1 TTT
27852 GATGCGACCC
Statistics
Matches: 789, Mismatches: 246, Indels: 157
0.66 0.21 0.13
Matches are distributed among these distances:
156 10 0.01
157 42 0.05
158 417 0.53
159 173 0.22
160 98 0.12
161 43 0.05
162 3 0.00
163 1 0.00
164 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (159 bp):
TTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
ATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGA
TTCCATCAAAAACAGGGAAAAGAAAAGCT
Found at i:26746 original size:625 final size:624
Alignment explanation
Indices: 25479--26775 Score: 1869
Period size: 625 Copynumber: 2.1 Consensus size: 624
25469 ATTGGTGGGA
* * * * **
25479 AAAATGCTTTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTAT
1 AAAA-GCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAGAAGACTAAGTTTAT
* *
25544 GGTGCCTAATCATGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTATCTTATTTAAGAGACA
65 GGTGCCTAATCATGAAAAAAATGGGGATTAGTGTGAGTATTCATGTTTAGCTTATTTAAGAGACA
** * * *
25609 AACTTTGATTCTATCCTAAACGGGGGAAAAAAAAGTTTTCTTGCGAGACCAAAGCATCAACGTCA
130 AACTTTGATTCTATCAAAAACGAGGGAAAAAAAAGTTTTCTTGCAACACCAAAGCATCAACGTCA
*
25674 TGTATCCTATTGAAGGGACGGTATTTTTGACTCCCAATCTTGAAAAGAATGGAGATTGTTACGAG
195 AGTATCCTATTGAAGGGACGGTATTTTTGACTCCCAATCTTGAAAAGAATGGAGATTGTTACGAG
** * *
25739 AATTGATGCATGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGGT
260 AACCGATGCATGTCTTATTTAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGAT
*
25804 TTCCATGCAAAAAAAATCATCAATATCATTTCTCCTAATGAGGAATGTTCTTATAGTGCCTAATC
325 TTCCATGCAAAAAAAATCATCAATATCATTTCTCCTAATAAGG-ATG-TCTTATAGTGCCTAATC
* *
25869 ACAAAATGAATGAAGATAATTGCTAGAATCCATTTTTGTCCCATTTGAGGCATGAACTTAGACTT
388 ACAAAATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTT
* ** * * * *
25934 TTCAAAAATTGGTGGGAAAGAGGCCTTTCATGCAAAACCAAAACTTCAATATTGCGTATCCTAAT
453 TACAAAAATTGGCAGGAAAAAGGCCTTTCATGCAAAACCAAAACATCAATATCGCATATCCTAAT
* * *
25999 AAGAAGACTATGTTTATGATATCCTCAAAAGAATGAGGATTAGTACGACTATTCATTTTTGTCTT
518 AAGAAGACTATGTTTATGATATCCTAAAAAGAATGAGGATTAGTACGACTATTAATGTTTGTCTT
* *
26064 ATTTGAAAGATAAACTTTGATTCCACCAAAAACGATGGAAAG
583 ATTTGAAAGACAAACTTTGATTCCACCAAAAACGAGGGAAAG
* * *
26106 GAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGAAGATTAAGTTTATG
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAGAAGACTAAGTTTATG
* *
26171 GTGCCTAATCCTGAAAAAAATGGGGATTAGTGTGAGTATTCATGTTT-GCTTATTTAAGAGGCAA
66 GTGCCTAATCATGAAAAAAATGGGGATTAGTGTGAGTATTCATGTTTAGCTTATTTAAGAGACAA
* * * *
26235 GCTTTGATTCTATCAAAAATGAGGGAAAGAAAAGTTTTCTTGCAACACCAAAGCATCAATG-CTA
131 ACTTTGATTCTATCAAAAACGAGGGAAAAAAAAGTTTTCTTGCAACACCAAAGCATCAACGTC-A
* * * *
26299 AGTATCCTATTGAAGGGA-GAGTGTTTTTGGCTTCCAATCTTGAAATGAATGGAGATTGTTACGA
195 AGTATCCTATTGAAGGGACG-GTATTTTTGACTCCCAATCTTGAAAAGAATGGAGATTGTTACGA
* * *
26363 GAACCGATGCTTGTCTT-TTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGTCAGAGAAAAG
259 GAACCGATGCATGTCTTATTT-AGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAG
*
26427 ATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATAAGG-TG-CTTATAGTGCCTAAT
323 ATTTCCATGCAAAA-AAAATCATCAATATCATTTCTCCTAATAAGGATGTCTTATAGTGCCTAAT
*
26490 CACAAAATGAATGAAG-TTATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACT
387 CACAAAATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACT
* *
26554 TTACAAAAATTGGCAGGAAAAAGGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAA
452 TTACAAAAATTGGCAGGAAAAAGGCCTTTCATGCAAAACCAAAACATCAATATCGCATATCCTAA
* *
26619 -AGAGAAGACTATGTTTACGGTGCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTAATGT
517 TA-AGAAGACTATGTTTA---TG-AT-ATCCTAAAAAGAATGAGGATTAGTACGACTATTAATGT
* *
26683 TTGTCTTATTT-AGGAGACAAACTTTGATTCCATCAAAAAC-AGGGAAAAG
576 TTGTCTTATTTGA-AAGACAAACTTTGATTCCACCAAAAACGAGGG-AAAG
26732 AAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTA
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTA
26776 TTTAAGGGAC
Statistics
Matches: 600, Mismatches: 58, Indels: 26
0.88 0.08 0.04
Matches are distributed among these distances:
620 1 0.00
621 116 0.19
622 31 0.05
624 9 0.01
625 234 0.39
626 206 0.34
627 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (624 bp):
AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAGAAGACTAAGTTTATG
GTGCCTAATCATGAAAAAAATGGGGATTAGTGTGAGTATTCATGTTTAGCTTATTTAAGAGACAA
ACTTTGATTCTATCAAAAACGAGGGAAAAAAAAGTTTTCTTGCAACACCAAAGCATCAACGTCAA
GTATCCTATTGAAGGGACGGTATTTTTGACTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGA
ACCGATGCATGTCTTATTTAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATT
TCCATGCAAAAAAAATCATCAATATCATTTCTCCTAATAAGGATGTCTTATAGTGCCTAATCACA
AAATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTAC
AAAAATTGGCAGGAAAAAGGCCTTTCATGCAAAACCAAAACATCAATATCGCATATCCTAATAAG
AAGACTATGTTTATGATATCCTAAAAAGAATGAGGATTAGTACGACTATTAATGTTTGTCTTATT
TGAAAGACAAACTTTGATTCCACCAAAAACGAGGGAAAG
Found at i:27231 original size:475 final size:467
Alignment explanation
Indices: 26113--27240 Score: 1522
Period size: 468 Copynumber: 2.4 Consensus size: 467
26103 AAGGAAAGCT
* * * * * * *
26113 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGAAGATTAAGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
* * *
26178 ATCCTGAAAAA-AATGG-GGATTAGTGTGAGTATTCATGTTTG-CTTATTTAAGAGGCAAGCTTT
66 ATCCT-AAAAAGAATGGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA--CAAACTTT
* *
26240 GATT-CTATCAAAAATGAGGGAAAGAAAAGTTTTCTTGCAACACCAAAGCATCAATG-CTAAGTA
128 GATTCCT-TCAAAAATG-GGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAAGTA
* * * * *
26303 TCCTATTGAAGGGAGAGTGTTTTTGGCTTCCAATCTTGAAATGAATGGAGATTGTTACGAGAACC
191 TCCTATTGAAGGGACAATGTTTTTGGCTCCCAATCTTGAAAAGAATAGAGATTGTTACGAGAACC
* * *
26368 GATGCTTGTCTTTTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGTCAGAGAAAAGATTTTC
256 GATGCTTGTCTTTTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATTTCC
* **
26433 ATGCAAAAGAAAATCATCAATATCATTTCTCCTAATAAGGTGCTTATAGTGCCTAATCACAAAAT
321 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGTAATTATAGTGCCTAATCACAAAAT
* * *
26498 GAATGAAGTTATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAA
386 GAATGAAGTCATTACTAGAATCCATGTTTGTCCCATTTAAGGCACGAACTTAGACTTTACAAAAA
26563 TTGGCAGGAAAAAGGCC
451 TTGGCAGGAAAAAGGCC
* * *
26580 TTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAAGAGAAGACTATGTTTACGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
*
26645 ATCCTAAAAAGAAT-GAGGATTAGTATGACTATTAATGTTTGTCTTATTTAGGAGACAAACTTTG
66 ATCCTAAAAAGAATGGAGGATTAGTATGACTATTCATGTTTGTCTTATTTA--AGACAAACTTTG
* *
26709 ATTCCATCAAAAACAGGGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTC-AAGTATC
129 ATTCCTTCAAAAA-TGGGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAAGTATC
* * * *
26773 CTATTTAAGGGACAATGTTTTTGGCTCCCAATCTTGAAAAGATTAGAGATTGTTACGAGAATCGG
193 CTATTGAAGGGACAATGTTTTTGGCTCCCAATCTTGAAAAGAATAGAGATTGTTACGAGAACCGA
*
26838 TGCTTGTCTTATTT-AGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCA
258 TGCTTGTCTT-TTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATTTCCA
* *
26902 TGCAAAAGAAAATCATCAATATCTTTTATCCTAGTGAGGAGAATGTAATTATAGTGCCTAATCAC
322 TGCAAAAGAAAATCATCAATATCATTTATCCTAAT-A--AG---GTAATTATAGTGCCTAATCAC
*
26967 AAAATTAATGGCAA-TCATTACTAGAATCCATGTTTG-CCTCATTTAAGGCACGAACTTAGACTT
381 AAAATGAAT-G-AAGTCATTACTAGAATCCATGTTTGTCC-CATTTAAGGCACGAACTTAGACTT
** *
27030 TACAAAAATTGGGGGGAAAAATGCC
443 TACAAAAATTGGCAGGAAAAAGGCC
* *
27055 TTTCTTGCGAAACCAAAACATCAATATCACGTATCCCAAAGGGAAGACTATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
* * * * * *
27120 ATCCTAAAAAGAATGGAGG-TTGGTTTGACCATTCATGTCTGTCATATTCTTAGACAAACTTTGA
66 ATCCTAAAAAGAATGGAGGATTAGTATGACTATTCATGTTTGTCTTATT-TAAGACAAACTTTGA
*
27184 TTCCTTCAAAAATGGTGAAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
130 TTCCTTCAAAAATGG-GAAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTC
27241 GTGTATCCAA
Statistics
Matches: 581, Mismatches: 58, Indels: 36
0.86 0.09 0.05
Matches are distributed among these distances:
466 6 0.01
467 85 0.15
468 214 0.37
469 7 0.01
470 3 0.01
471 2 0.00
473 2 0.00
474 63 0.11
475 192 0.33
476 7 0.01
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (467 bp):
TTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
ATCCTAAAAAGAATGGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGACAAACTTTGAT
TCCTTCAAAAATGGGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAAGTATCCTA
TTGAAGGGACAATGTTTTTGGCTCCCAATCTTGAAAAGAATAGAGATTGTTACGAGAACCGATGC
TTGTCTTTTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATTTCCATGCA
AAAGAAAATCATCAATATCATTTATCCTAATAAGGTAATTATAGTGCCTAATCACAAAATGAATG
AAGTCATTACTAGAATCCATGTTTGTCCCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGC
AGGAAAAAGGCC
Found at i:27288 original size:475 final size:464
Alignment explanation
Indices: 26113--27291 Score: 1443
Period size: 475 Copynumber: 2.5 Consensus size: 464
26103 AAGGAAAGCT
* * * * * * *
26113 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGAAGATTAAGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
* * *
26178 ATCCTGAAAAA-AATGG-GGATTAGTGTGAGTATTCATGTTTG-CTTATTTAAGAGGCAAGCTTT
66 ATCCT-AAAAAGAATGGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA--CAAACTTT
* *
26240 GATT-CTATCAAAAATGAGGGAAAGAAAAGTTTTCTTGCAACACCAAAGCATCAATG-CTAAGTA
128 GATTCCT-TCAAAAATG-GGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCT--GTA
* * * *
26303 TCCTATTGAAGGGAGAGT--GTTTTTGGCTTCCAATCTTGAAATGAATGGAGATTGTTACGAGAA
189 TCCTATTG-A-GAAGACTAAGTTTTTGGC-TCCAATCTTGAAAAGAATAGAGATTGTTACGAGAA
* *
26366 CCGATGCTTGTCTTTTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGTCAGAGAAAAGATTT
251 CCGATGCTTGTCTTTTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATTT
* * **
26431 TCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATAAGGTGCTTATAGTGCCTAATCACAAA
316 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGTAATTATAGTGCCTAATCACAAA
* * *
26496 ATGAATGAAGTTATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAA
381 ATGAATGAAGTCATTACTAGAATCCATGTTTGTCCCATTTAAGGCACGAACTTAGACTTTACAAA
26561 AATTGGCAGGAAAAAGGCC
446 AATTGGCAGGAAAAAGGCC
* * *
26580 TTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAAGAGAAGACTATGTTTACGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
*
26645 ATCCTAAAAAGAAT-GAGGATTAGTATGACTATTAATGTTTGTCTTATTTAGGAGACAAACTTTG
66 ATCCTAAAAAGAATGGAGGATTAGTATGACTATTCATGTTTGTCTTATTTA--AGACAAACTTTG
* * *
26709 ATTCCATCAAAAACAGGGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCC
129 ATTCCTTCAAAAA-TGGGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTC-TGTATCC
* * * *
26774 TATTTA-AGGGAC-AATGTTTTTGGCTCCCAATCTTGAAAAGATTAGAGATTGTTACGAGAATCG
192 TATTGAGA-AGACTAA-GTTTTTGGCT-CCAATCTTGAAAAGAATAGAGATTGTTACGAGAACCG
* *
26837 GTGCTTGTCTTATTT-AGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCC
254 ATGCTTGTCTT-TTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATTTCC
* *
26901 ATGCAAAAGAAAATCATCAATATCTTTTATCCTAGTGAGGAGAATGTAATTATAGTGCCTAATCA
318 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-A--AG---GTAATTATAGTGCCTAATCA
*
26966 CAAAATTAATGGCAA-TCATTACTAGAATCCATGTTTG-CCTCATTTAAGGCACGAACTTAGACT
377 CAAAATGAAT-G-AAGTCATTACTAGAATCCATGTTTGTCC-CATTTAAGGCACGAACTTAGACT
** *
27029 TTACAAAAATTGGGGGGAAAAATGCC
439 TTACAAAAATTGGCAGGAAAAAGGCC
* *
27055 TTTCTTGCGAAACCAAAACATCAATATCACGTATCCCAAAGGGAAGACTATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
* * * * * *
27120 ATCCTAAAAAGAATGGAGG-TTGGTTTGACCATTCATGTCTGTCATATTCTTAGACAAACTTTGA
66 ATCCTAAAAAGAATGGAGGATTAGTATGACTATTCATGTTTGTCTTATT-TAAGACAAACTTTGA
*
27184 TTCCTTCAAAAATGGTGAAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCC
130 TTCCTTCAAAAATGG-GAAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTC-TGTATCC
* * * *
27249 AAATGAGAAGACTAAGTTTATGG-TGCCTAATCCTGAAAAGAAT
192 TATTGAGAAGACTAAGTTTTTGGCT-CC-AATCTTGAAAAGAAT
27292 GGGGATAAGT
Statistics
Matches: 612, Mismatches: 69, Indels: 54
0.83 0.09 0.07
Matches are distributed among these distances:
466 8 0.01
467 87 0.14
468 203 0.33
469 7 0.01
470 3 0.00
471 2 0.00
473 2 0.00
474 66 0.11
475 224 0.37
476 10 0.02
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (464 bp):
TTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
ATCCTAAAAAGAATGGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGACAAACTTTGAT
TCCTTCAAAAATGGGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTGTATCCTATT
GAGAAGACTAAGTTTTTGGCTCCAATCTTGAAAAGAATAGAGATTGTTACGAGAACCGATGCTTG
TCTTTTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
GAAAATCATCAATATCATTTATCCTAATAAGGTAATTATAGTGCCTAATCACAAAATGAATGAAG
TCATTACTAGAATCCATGTTTGTCCCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGCAGG
AAAAAGGCC
Found at i:27431 original size:635 final size:633
Alignment explanation
Indices: 26580--27875 Score: 1990
Period size: 635 Copynumber: 2.0 Consensus size: 633
26570 GAAAAAGGCC
* * * *
26580 TTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAAGAGAAGACTATGTTTACGGTGCCTA
1 TTTCTTGCGACACCAAAGCATCAATGTCGCATATCCTAAAGAGAAGACTAAGTTTACGGTGCCTA
* * ***** * *
26645 ATCCTAAAAAGAATGAGGATTAGTATGACTATTAATGTTTGTCTTATTTAGGAGACAAACTTTGA
66 ATCCTAAAAAGAATGAGGATAAGTATGAATATTAATAAACATCTTATGTAAGAGACAAACTTTGA
26710 TTCCATCAAAAACAGGGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCT
131 TTCCATCAAAAACAGGGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCT
**
26775 ATTTAAGGGACAATGTTTTTGGCTCCCAATCTTGAAAAGATTA-GAGATTGTTACGAGAATCGGT
196 ATTTAAGGGACAATGTTTTTGGCTCCCAATCTTGAAAAGA-TAGGAGATTGTTACGAGAATCAAT
* *
26839 GCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATG
260 GCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTCCATA
*
26904 CAAAAGAAAATCATCAATATCTTTTATCCTAGTGAGGAGAATGTAATTATAGTGCCTAATCACAA
325 CAAAAGAAAATCATCAATATCTTTTATCCTAGTGAGGAGAATGTAATTATAGCGCCTAATCACAA
26969 AATTAATGGCAATCATTACTAGAATCCATGTTTGCCTCATTTAAGGCACGAACTTAGACTTTACA
390 AATTAATGGCAATCATTACTAGAATCCATGTTTGCCTCATTTAAGGCACGAACTTAGACTTTACA
* *
27034 AAAATTGGGGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCACGTATCCCAAAGGGA
455 AAAATTGGGGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCACATATCCCAAAGAGA
* * *
27099 AGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGAGGTTGGTTTGACCATTCATGTCTGTCA
520 AGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGAGATTAGTATGACCATTCATGTCTGTCA
* * *
27164 TATTCT-TAGACAAACTTTGATTCCTTCAAAAATGGTGAAAAGG-AAAGCT
585 TATT-TAGAGACAAACTTTGATTCCATCAAAAACGGTG-AAAGGAAAAGCT
** *
27213 TTTCTTGCGACACCAAAGCATCAATGTCGTGTATCC-AAATGAGAAGACTAAGTTTATGGTGCCT
1 TTTCTTGCGACACCAAAGCATCAATGTCGCATATCCTAAA-GAGAAGACTAAGTTTACGGTGCCT
* * *
27277 AATCCTGAAAAGAATGGGGATAAGTATGAGTATATTCATAAACATCTTATGTAAGAGACAAACTT
65 AATCCTAAAAAGAATGAGGATAAGTATGA--ATATTAATAAACATCTTATGTAAGAGACAAACTT
* * * *
27342 TGATTCCGTTAAAAACAGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATGTCAAGTAT
128 TGATTCCATCAAAAACAGGGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTAT
27407 CCTATTTAAGGGACAATGTTTTTGGCTCCCAATCTTGAAAAGATAGGAGATTGTTACGAGAATCA
193 CCTATTTAAGGGACAATGTTTTTGGCTCCCAATCTTGAAAAGATAGGAGATTGTTACGAGAATCA
27472 ATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTCCA
258 ATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTCCA
**
27537 TACAAAAGAAAATCATCAATATCTTTTATCCTAGTGAGGAGAATGTGCTTATAGCGCCTAATCAC
323 TACAAAAGAAAATCATCAATATCTTTTATCCTAGTGAGGAGAATGTAATTATAGCGCCTAATCAC
*
27602 AAAATTAATGGCAATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTA
388 AAAATTAATGGCAATCATTACTAGAATCCATGTTTGCCTCATTTAAGGCACGAACTTAGACTTTA
* * * *
27667 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGA
453 CAAAAATTGGGGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCACATATCCCAAAGA
* * * * * *
27732 GAAGACTATGTTTATGGTGCCTAATCTTGAAAGGAATGGAGATTAGTATGACTATTCGTGTTTGT
518 GAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGAGATTAGTATGACCATTCATGTCTGT
* * *
27797 CTTGTTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAGGAAAAGCT
583 CATATTT-AGAGACAAACTTTGATTCCATCAAAAACGGTGAAAGGAAAAGCT
** *
27849 TTTGATGCGAC-CCTGAAGCATCAATGT
1 TTTCTTGCGACACC-AAAGCATCAATGT
27876 ATCCTATTGA
Statistics
Matches: 600, Mismatches: 55, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
632 3 0.00
633 79 0.13
634 3 0.00
635 460 0.77
636 55 0.09
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.30
Consensus pattern (633 bp):
TTTCTTGCGACACCAAAGCATCAATGTCGCATATCCTAAAGAGAAGACTAAGTTTACGGTGCCTA
ATCCTAAAAAGAATGAGGATAAGTATGAATATTAATAAACATCTTATGTAAGAGACAAACTTTGA
TTCCATCAAAAACAGGGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCT
ATTTAAGGGACAATGTTTTTGGCTCCCAATCTTGAAAAGATAGGAGATTGTTACGAGAATCAATG
CTTGTCTTATTTAGGGGATGAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTCCATAC
AAAAGAAAATCATCAATATCTTTTATCCTAGTGAGGAGAATGTAATTATAGCGCCTAATCACAAA
ATTAATGGCAATCATTACTAGAATCCATGTTTGCCTCATTTAAGGCACGAACTTAGACTTTACAA
AAATTGGGGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCACATATCCCAAAGAGAA
GACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGAGATTAGTATGACCATTCATGTCTGTCAT
ATTTAGAGACAAACTTTGATTCCATCAAAAACGGTGAAAGGAAAAGCT
Found at i:28187 original size:469 final size:473
Alignment explanation
Indices: 27210--28239 Score: 1335
Period size: 469 Copynumber: 2.2 Consensus size: 473
27200 GAAAAGGAAA
* * * * * *
27210 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCAAATGAGAAGACTAAGTTTATGGTGC
1 GCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGC
*
27275 CTAATCCTGAAAAGAATGGGGATAAGTATGAGTATATTCATAAACATCTTATGTAAGAGACAAAC
66 CTAATCCTGAAAAGAATGGAGATAAGTATGAG-ATATTCATAAACATCTTATGTAAGAGACAAAC
* * * *
27340 TTTGATTCCGTTAAAAACAGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATGTCAAGT
130 TTTGATTCCATCAAAAACAGGGGAAAGAAAAGTTTTCATGCGACACCAAAGCATCAA-GT--AGT
* *
27405 ATCCTATTTAAGGGACAATGTTTTTGGCTCCCAATCTTGAAAAGATAGGAGATTGTTACGAGAAT
192 ATCCTATTGAAGGGACAATGTTTTTGGCTCCCAATCTTGAAAAGATAGGAGATTGTTACGAGAAA
* * * *
27470 CAATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTC
257 CAATGCCTGTCTTATTTAAGGGATAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAGATTTC
* *
27535 CATACAAAAGAAAATCATCAATATCTTTTATCCTAGTGAGGAGAATGTGCTTATAGCGCCTAATC
322 CATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGCGCCTAATC
* * *
27600 ACAAAATTAATGGCAATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTT
387 ACAAAATTAATGGAAATCATTACTAGAATCCATGTTTGTCCCATTTAAGCCACGAACTTAGACTT
* * *
27665 TACAAAAATTGGTGGGAAAAAT
452 CACAAAAATTGGTGAGAAAAAG
* *
27687 GCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTATGTTTATGGTGC
1 GCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * * * * ***** * *
27752 CTAATCTTGAAAGGAATGGAGATTAGTATGA-CTATTCGTGTTTGTCTTGTTTAAGAGACAAACT
66 CTAATCCTGAAAAGAATGGAGATAAGTATGAGATATTCATAAACATCTTATGTAAGAGACAAACT
* * *
27816 TTGATTCCATCAAAAAC-GGTGGAAGGAAAAGCTTTTGATGCGAC-CCTGAAGCATCAA-T-GTA
131 TTGATTCCATCAAAAACAGG-GGAAAGAAAAG-TTTTCATGCGACACC-AAAGCATCAAGTAGTA
* * * *
27877 TCCTATTGATGGGA-ATGTGTTTTTGGTTCCCAATCTTGAAAAGA-ATGGTGATTGTTACGAGAA
193 TCCTATTGAAGGGACA-ATGTTTTTGGCTCCCAATCTTGAAAAGATA-GGAGATTGTTACGAGAA
* * *
27940 ACGATGCCTGTCTTATTTAAGGGATAAACTTTTATTTTACGAAAAATAGGGCAAAGAAAAGATTT
256 ACAATGCCTGTCTTATTTAAGGGATAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAGATTT
* * * *
28005 CCATGCAATAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAAT
321 CCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGCGCCTAAT
* * * *
28068 GACAAAA-TGATTGAAGATCATTACTAGAATCCATGTTTGTCCCA-TTAGAGCCATGAACTTAGA
386 CACAAAATTAATGGAA-ATCATTACTAGAATCCATGTTTGTCCCATTTA-AGCCACGAACTTAGA
28131 CTTCACAAAAATTGGTGAGAAAAAG
449 CTTCACAAAAATTGGTGAGAAAAAG
* * *
28156 GCTTTTCTTGTGAAACCAAAACATCAATATCGCGTATCCTAAAGGGAAGACTATGTTTATGGTGC
1 GCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGC
*
28221 CTAATCCTAAAAAGAATGG
66 CTAATCCTGAAAAGAATGG
28240 GGGTTAGTTT
Statistics
Matches: 481, Mismatches: 65, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
468 8 0.02
469 165 0.34
470 3 0.01
471 149 0.31
474 3 0.01
475 51 0.11
476 18 0.04
477 84 0.17
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.30
Consensus pattern (473 bp):
GCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGC
CTAATCCTGAAAAGAATGGAGATAAGTATGAGATATTCATAAACATCTTATGTAAGAGACAAACT
TTGATTCCATCAAAAACAGGGGAAAGAAAAGTTTTCATGCGACACCAAAGCATCAAGTAGTATCC
TATTGAAGGGACAATGTTTTTGGCTCCCAATCTTGAAAAGATAGGAGATTGTTACGAGAAACAAT
GCCTGTCTTATTTAAGGGATAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAGATTTCCATA
CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGCGCCTAATCACAA
AATTAATGGAAATCATTACTAGAATCCATGTTTGTCCCATTTAAGCCACGAACTTAGACTTCACA
AAAATTGGTGAGAAAAAG
Found at i:34687 original size:15 final size:15
Alignment explanation
Indices: 34667--34697 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
34657 TAAAAATGTC
*
34667 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
34682 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
34697 C
1 C
34698 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:36791 original size:20 final size:20
Alignment explanation
Indices: 36712--36791 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
36702 AATGTCCAAA
*
36712 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
36732 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
36757 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
36777 TTGTATCGATACATT
1 ATGTATCGATACATT
36792 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:36795 original size:13 final size:13
Alignment explanation
Indices: 36777--36815 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
36767 ACATTTTTCT
36777 TTGTATCGATACA
1 TTGTATCGATACA
36790 TTGTATCGATACA
1 TTGTATCGATACA
*
36803 CTGTATCGATACA
1 TTGTATCGATACA
36816 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:36960 original size:21 final size:21
Alignment explanation
Indices: 36936--36982 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
36926 AAATCTTTTG
36936 CAAAAT-ACTT-GTTTTTCACTT
1 CAAAATAACTTCGTTTTTCA--T
36957 C-AAATAACTTCGTTTTTCAT
1 CAAAATAACTTCGTTTTTCAT
36977 CAAAAT
1 CAAAAT
36983 CAGCATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (21 bp):
CAAAATAACTTCGTTTTTCAT
Found at i:36979 original size:20 final size:19
Alignment explanation
Indices: 36938--36980 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
36928 ATCTTTTGCA
36938 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
36958 AAATAACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
36978 AAA
1 AAA
36981 ATCAGCATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:39352 original size:13 final size:13
Alignment explanation
Indices: 39334--39359 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
39324 TACAGCAAGT
39334 ATGTATCGATACA
1 ATGTATCGATACA
39347 ATGTATCGATACA
1 ATGTATCGATACA
39360 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:40538 original size:20 final size:21
Alignment explanation
Indices: 40513--40562 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
40503 GAGCCAATGC
*
40513 ATCGATACAATTCT-TCATGT
1 ATCGATACAATTCTGCCATGT
*
40533 ATCGATAC-ATTGTGCCATGT
1 ATCGATACAATTCTGCCATGT
40553 ATCGATACAA
1 ATCGATACAA
40563 ATAGTGGTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 4 0.15
20 21 0.81
21 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (21 bp):
ATCGATACAATTCTGCCATGT
Found at i:40650 original size:13 final size:13
Alignment explanation
Indices: 40632--40656 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40622 ACAATGAACA
40632 TGTATCGATACAT
1 TGTATCGATACAT
40645 TGTATCGATACA
1 TGTATCGATACA
40657 AAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:42492 original size:475 final size:475
Alignment explanation
Indices: 40964--45442 Score: 2818
Period size: 475 Copynumber: 9.4 Consensus size: 475
40954 GATCCTACCA
* * * * * *
40964 GATTCTCGTAACAGTCTCCATGCTTTTAAAGATTGGGAACCTAAAACACATTCCCTTCAATAGGA
1 GATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * * * *
41029 TACATGACATGGATGCTTTGATGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATATAATCA
66 TACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA
* * ** *
41094 AAGCTTGTCTCTTAAATAA-AGCAAACATTAATACTTTTACTAATCCCTATTCTTTTGAGGATTA
131 AAGTTTGTCTCTTAAATAAGA-CAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTA
* * * * * **
41158 TGCACTATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTCGTTTCACAAGAAAGG
195 GGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGG
* * * * * * *
41223 CACTATTCCCACCAATTTTCGAAAAGTCTAAGTTCCTGCCTCAAATGAGTCAAACTTGGATTCTA
260 CATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTA
* * * **
41288 GTATTGATCTTCATTCATTTTTCGATTAGGCACTATAAATGCATTCTCCTCATTAGGATAAATGA
325 GTAATGATCTTCATTCATTTGT-AATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
* *
41353 TATTGATGATTTTCTTTTGCATGGAAATCTTTACTTTGCCCTATTTTCCTTAAAATTAAAGTTCA
389 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* *
41418 TCCCTTAAA-AGGATAAGCATC
454 TCCCTTAAATAAGAAAAGCATC
* *
41439 GATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACGCATTCCCTCCATTAGGA
1 GATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
** * * * * *
41504 TACACAACATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTGCACCTTTTTTTATAGAATCA
66 TACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA
* * * * *
41569 CAGTTTTTCTCTTAAATAAGACAAACAAGAA-AATGCATACTAATCCCTAATCTTTTCAGGATTA
131 AAGTTTGTCTCTTAAATAAGACAAACATGAATACT-CATACTAATCCCTATTCTTTTCAGGATTA
* * *
41633 GGCACCATAAACATTGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTT-TTCAAGAAAG
195 GGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGT-AAGAAAG
* * * * * * *
41697 G-TTTTTTCCCATCAACTTTTGTAAAGTATAA-TTCGTGCCTCAAATGAGATAAACATGGATTAT
259 GCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCT
* *
41760 AGTAATGATCTTCTTTCAATTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
324 AGTAATGATCTTCATTC-ATTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* * * * *
41825 ATATTGA-CATTTTCTTTTGCATTGAAATCTTTTTTTTGCCATATTTTCCTTGAAATCAAAGTTC
388 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* *** *
41889 ATCCCTGAAATAAGACCGGCACC
453 ATCCCTTAAATAAGAAAAGCATC
* * * * *
41912 GATTCTCGTAACAATCTCCACTATTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
1 GATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * * * *
41977 TACATCACATTGATGCTTTGATGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTTTATTGAATCA
66 TACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA
* * * *
42042 AAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATGCTAATCCCCATTCTTTTCAGGATTTG
131 AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAG
* ** *
42107 GCACCATAAACATAGTCTTCTCATTAGGATACGCGATATTGATATTTTGGTTTCGTACGAAAGGC
196 GCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGC
* * * * * *
42172 ATTTTTCCTACCAATTTTTATAAAGTCTAAGTTCATGCCTTAAATAAGACAAACTTAGATTCTAG
261 ATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAG
* * * *
42237 TAATGATCTTCATCCATTTGCTAATTAGGCACTACAATCACATTCTCCTCATTAGGATAAGTGAT
326 TAATGATCTTCATTCATTTG-TAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * *
42302 ATTGTTGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCAT-AAATGAAAGTTCAT
390 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
*
42366 CCCTTAAATAGGAAAAGCATC
455 CCCTTAAATAAGAAAAGCATC
* * * * * * * *
42387 GATTTTCAAAATAGTCTCCATTATTTTCAAGATTAGGAACCTAAAACACATTTCATTCATTAAGA
1 GATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * * * *
42452 TACATGACATTAATGCTTTGGTATCACAAGAAATGCTTTTCTTTTCACCATTTTTGATAGAATCA
66 TACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA
* * * *
42517 AAGTTTGTCTCTTAAATAAGACAAACATGAATATTCATACTATTCCCTGTTCTATTCAGGATTCA
131 AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATT-A
* ** * * **
42582 -GCACCATAAATATAGT-TTCCTCATTAGGATACACGATATTGGCGCTTTGATTTTGTTGGAAAG
195 GGCACCATAAACATAGTCTT-CTCATTAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAG
* * * * *
42645 GCTTTTTTCCCACCAATTTTCGTAAAGTCTAAGTTCATCCCTCAATTGAGACAAACAAGGATTCT
259 GCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCT
* *
42710 AGTAATGATCTTCTTTCATTTTGTTATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAAT
324 AGTAATGATCTTCATTCA-TTTGTAATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAAT
* * * * *
42774 GATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG-TCTGATTTTCTTTAATATAAAAGT
387 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAGT
* * * *
42838 TC-GCCGTTTAAATAAGACAAGCATT
451 TCATCC-CTTAAATAAGAAAAGCATC
* * *
42863 GATTCTCATAA-CGATC-CTCATTCTTTGCAAGATTGGGAACCAAAAACACATTCCCTTTATTAG
1 GATTCTCATAATAG-TCTC-CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAG
* * * *
42926 GATACAAGTCTTTGATGCTTTGGTGT-AGGAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAA
64 GATACATGACATTGATGCTTTGGTGTCA-CAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAA
* * * * * * *
42990 TCAATGTTTGCCACTTAAATAAGGCAAACATGAATACTCATTCTAATCCCCATTCTTTGC-GAGA
128 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAG-GA
* * * * *
43054 TTAGGCACCAT-AACATAGTGTTCTCATTAGGATACATGATATTGATGCTTT-ATTCTCAT-TG-
192 TTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTT-TCGTAAGA
* * * * *
43115 --GG-----GT---A-C-A----TGTAAAGTCTAAGTTCGTGCCTTAAAT-CGACAAACATGGAC
256 AAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGAT
* * *
43163 TCTAGTAATGATCTTCATTCATTT-TAAGATTAGACACTATAAACACATTCTCCACTTTAGGAT-
321 TCTAGTAATGATCTTCATTCATTTGT-A-ATTAGGCACTATAAACACATTCTCCTCATTAGGATA
* * * ** *
43226 AATGATTTTAATGA-TTTCACTTTGCACAGAAATATTTTCTTTGCCCTATTTTCC-TAAAATCAA
384 AATGATATTGATGATTTTC-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * *
43289 AGTACATACCTTAAATAAAAAAAGCATC
448 AGTTCATCCCTTAAATAAGAAAAGCATC
* * * *
43317 GATTCTCGTAACT-GTCTCCATTCTTTTCAAGATTGGGAACCTAAAACACATTCCCTTTAATAGG
1 GATTCTCATAA-TAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGG
* * * * *
43381 ATACATGAAATCGATCCTGTGGTGT-AGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATATAAT
65 ATACATGACATTGATGCTTTGGTGTCA-CAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
* * * *
43445 CAAAGTTTGTCTTTTAAATAA-AGCAAACATTAATACTCATACTAATCCCTATTCTTTTCAAGAC
129 CAAAGTTTGTCTCTTAAATAAGA-CAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGAT
* * ** * * * *
43509 TAGG-ATCCGA-AAACACATTCCCTTCT--TTAGGATACAAAACATTAAAGCTTTGGTGTCGTAA
193 TAGGCA-CC-ATAAACATAGT--CTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGTAA
* * * * * * * * * ** *
43570 AAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAA-TCAAAGTT-TTTCTCTTAAAAAAGATAAAC
254 GAAAGGCATTT-TTCCCACCAATTTTTG-TA-AAGTCTAAGTTCATGC-CTCAAATGAGACAAAC
* * * * * * * * *
43632 ATGAATACTCA-TACTAAT-TGCCATTC-TTTTTAAGATTAGGCACCATAAACATAGTC-CTCTC
315 ATGGATTCT-AGTAATGATCT-TCATTCATTTGT-A-ATTAGGCACTATAAACACATTCTC-CTC
* * * ** * * * *
43693 ATTAGGATACATGACATTGATGCTTTGGTTTCGCA-AGAAAGGCTTTT-TCCT-CACC-AGTTTT
375 ATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA-TCTTTTCT-TTGC-CCTA-TTTT
* * * * * ** * *
43754 --TGTAAAGTCTAAGTTCGTGCCTAAAATGGGACAAA-AATG
436 CCT-TAAAATCAAAGTTCATCCCTTAAATAAGA-AAAGCATC
** * * * * **
43793 GATTCT-AGTAAT-GATCAT-CATTCATTTTGTA-ATTAGGCACTATAAACACATTCTTTTCATT
1 GATTCTCA-TAATAG-TC-TCCATTC-TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATT
* * * ** ** * * * * ** **
43854 AGGATA-AGTGATATTGTTGATTTTCCT-TTGCATGGAAATCTTTTTTTTGCC-CTATTTTTCTT
62 AGGATACA-TGACATTGATG-CTTTGGTGTCACAAGAAAAGCTTTTCTTT-CCACCGTTTTTGAT
** * * * * * *
43916 A-ACATCATTGTTTATCCCTTAAATAAGA-AAAGCGTTG-ATTCTCATAAC-AGTCTCC-ATTAT
124 AGA-ATCAAAGTTTGTCTCTTAAATAAGACAAA-C-ATGAATACTCAT-ACTAATC-CCTATTCT
* * * * * * * * * *
43976 TTTCACGATTGGGAACTTAAAAGACAT-TTCCT-TAATTAGGATTACAAGACAATT-ATGCTTTG
184 TTTCAGGATTAGGCAC-CATAA-ACATAGTCTTCTCATTAGGA-TACACGA-TATTGATGCTTTG
* * * * * * * * *
44038 GTGTCGCAAGAAAAGCTTTTCTTTCCACC-GTTTTTAATAGAA-TC-ATAGTTTAT-CTCTTAAA
245 GTTTCGTAAGAAAGGCATTT-TTCCCACCAATTTTT-GTA-AAGTCTA-AGTTCATGC-CTCAAA
* * * ** ** ** * *
44099 TAAGACAAACATGAATACTCATACTAAT-CCCTT--TTTTTTTCAAGATTAGGCACCATAAACAT
305 TGAGACAAACATGGAT--TC-TAGTAATGATCTTCATTCATTTGTA-ATTAGGCACTATAAACAC
* * * * * ** * ** * *
44161 AGTCTTCTCATTAGGATACACGATATT-AGTGCTTTGGTTTTGCA-AGAAAGGTTTTTTTTCCCA
366 ATTCTCCTCATTAGGATAAATGATATTGA-TGATTTTCTTTTGCATGGAAATCTTTTCTTT-GC-
* * ** ** * * * *
44224 CCAATTTT--TGTAAAGT-TTAGCTTCATTACTCAATTGAGACAAA-CATG
428 CCTATTTTCCT-TAAAATCAAAG-TTCATCCCTTAAATAAGA-AAAGCATC
* * * * ** * * * * *
44271 GATTCTCGT-ATTGATCTTCAATCATTTT-TTGATTAGGCACTATAAACACGTTCTCC-TCATTA
1 GATTCTCATAATAG-TCTCCATTC-TTTTCAAGATTGGGAACCAAAAACACATTC-CCTTCATTA
* * * ** * ** * * * * * * **
44333 GGATA-ATTGATATTAATGATTTTCTTTTGCATGGAAATCTTTACTTT--GCCTTATTTTCCTTA
63 GGATACA-TGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGT-TTTT-GATA
* * * * * * * * *
44395 AAATCAAAGTTTATCTCTTAAA-AAAACAAGCATCAATTCCCATAAACATAAAAAAAGATAAACA
125 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT--AC-T------A-AT--CCC
* * * * ** * * * * * ** **
44459 TAAATACTCATACTA--ATT-GCCATTCTTTTTAAGATTAGGC-AC-CATAAACATAGTC-CTCT
178 T--ATTCT-TTTC-AGGATTAGGCA--C-CATAAACA-TAGTCTTCTCATTAGGATA--CACGAT
* * * ** * *
44518 CATTAGGATACATGACATTGATGCTTTGGTTTAA-CAAGAAAGGCTTTTTCCTCACCAGTTTTTG
233 -ATT--G----ATG-C-TT--TGGTTTCG--TAAGAAAGGCA--TTTTT-CC-CACCAATTTTTG
** * * * *
44582 TAAA-TCCTAAGTTTGTACCTCAAATGGGACAAAAATGGATTCTAGTAATGATCATCATTCATTT
281 TAAAGT-CTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA-TT
** * * *
44646 TGTAATTAGGCACTATAAACACATTCTTTTCATTAGGATAAGTGATATTGTTGATTTTCCTTTGC
344 TGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * * ** *
44711 ATGGAAATCTTTTTTTTGTCCTATTTTTCTTAACATCATTGTTTATCCCTTAAATAAGAAAAGC-
409 ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAAAAGCA
*
44775 GC
474 TC
* * * ** * * *
44777 TGATTCTCATAACAGTCTCCATTCTTTTCAGGATTAGGAACTTAAAAGACATTTCCTTAATTAGG
1 -GATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGG
* * * * *
44842 ATTACAAGACAATT-ATGCTTTGGTCTCGCAAGCAAAGCTTTTCTTTCCACCGTTTTTAATAGAA
65 A-TACATGAC-ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAA
* * *
44906 TCACAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCT-TTCTTTTTCAGG
128 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT-CCCTATTC-TTTTCAGG
* * *
44970 ATTAGGCATCATAAACATAGTCTTCTCATTAGGATACACGATATT-AGTGCTTTGGTTTTGCAAG
191 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGA-TGCTTTGGTTTCGTAAG
** * ** *
45034 AAAGGTTTTTTTCCCACCAATTTTTGTAAAGT-TTAGCTTCATTACTCAATTGAGACAAACATGG
255 AAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAG-TTCATGCCTCAAATGAGACAAACATGG
* ** * * * *
45098 ATTCTCGTGTTGATCTTCAGTCATTTTTTGATTAGGCACTATAAACACATTCTTCTCATTAGGAT
319 ATTCTAGTAATGATCTTCATTCA-TTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * * * *
45163 AATTGATATTAATGATTTTCTTTCGCATGAAAATCTTTACTTTGCCTTATTTTCCTTAAAATCAA
383 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* *
45228 AGTTTATCTCTTAAA-AA-AACAAGCATC
448 AGTTCATCCCTTAAATAAGAA-AAGCATC
* * * * ** * *
45255 AATTCCCATAACAGTCTCCATTCTTTTCAAGATTTAGG-ACCCTAAACACATTCCCTTTAATAGG
1 GATTCTCATAATAGTCTCCATTCTTTTCAAGA-TTGGGAACCAAAAACACATTCCCTTCATTAGG
* * * * *
45319 ATACATGACATCGATTCTTTGGTGT-AGCAAGAAAAGCTTTTATTTCCGCCGTTTTTGATATAAT
65 ATACATGACATTGATGCTTTGGTGTCA-CAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
* * *
45383 CAAAGTTTGTCTTTTAAATAA-AGCAAACATTAATACTCATACTAATCTCTATTCTTTTCA
129 CAAAGTTTGTCTCTTAAATAAGA-CAAACATGAATACTCATACTAATCCCTATTCTTTTCA
45443 ATACTGGGAT
Statistics
Matches: 3142, Mismatches: 651, Indels: 422
0.75 0.15 0.10
Matches are distributed among these distances:
453 1 0.00
454 198 0.06
455 74 0.02
456 63 0.02
457 28 0.01
459 1 0.00
461 1 0.00
462 1 0.00
463 1 0.00
465 1 0.00
466 1 0.00
468 1 0.00
469 1 0.00
471 2 0.00
472 59 0.02
473 322 0.10
474 92 0.03
475 819 0.26
476 507 0.16
477 256 0.08
478 315 0.10
479 7 0.00
480 9 0.00
481 2 0.00
482 3 0.00
483 6 0.00
485 2 0.00
486 3 0.00
487 3 0.00
488 1 0.00
490 2 0.00
491 10 0.00
492 14 0.00
493 11 0.00
494 8 0.00
495 11 0.00
496 4 0.00
497 3 0.00
498 2 0.00
499 5 0.00
500 2 0.00
501 2 0.00
503 5 0.00
504 8 0.00
505 8 0.00
506 23 0.01
507 140 0.04
508 78 0.02
509 23 0.01
510 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (475 bp):
GATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
TACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA
AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAG
GCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGC
ATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAG
TAATGATCTTCATTCATTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
CCTTAAATAAGAAAAGCATC
Found at i:43755 original size:159 final size:159
Alignment explanation
Indices: 43336--43739 Score: 449
Period size: 159 Copynumber: 2.5 Consensus size: 159
43326 AACTGTCTCC
* * * * * * * * * * *
43336 ATTCTTTTCAAGATTGGGAACCTAAAACACATTCCCTTTAATAGGATACATGAAATCGATCCTGT
1 ATTCTTTTCAAGACTAGGATCCGAAAACACAGTCCCTTCATTAGGATACATGACATTGATGCTTT
* * *
43401 GGTGTAGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATATAATCAAAGTTTGTCTTTTAAATAA
66 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
*
43466 AGCAAACATTAATACTCATACTAATCCCT
131 AGCAAACATGAATACTCATACTAATCCCT
* * ** * *
43495 ATTCTTTTCAAGACTAGGATCCGAAAACACATTCCCTTCTTTAGGATACAAAACATTAAAGCTTT
1 ATTCTTTTCAAGACTAGGATCCGAAAACACAGTCCCTTCATTAGGATACATGACATTGATGCTTT
* * *
43560 GGTGTCGTAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAA-AA
66 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* *
43624 AGATAAACATGAATACTCATACTAATTGCC-
131 AG-CAAACATGAATACTCATACTAA-TCCCT
* * *
43654 ATTCTTTTTAAGATTAGGCA-CC-ATAAACATAGT-CCTCTCATTAGGATACATGACATTGATGC
1 ATTCTTTTCAAGACTAGG-ATCCGA-AAACACAGTCCCT-TCATTAGGATACATGACATTGATGC
* *
43716 TTTGGTTTCGCAAGAAAGGCTTTT
63 TTTGGTGTCGCAAGAAAAGCTTTT
43740 TCCTCACCAG
Statistics
Matches: 203, Mismatches: 37, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
158 8 0.04
159 191 0.94
160 4 0.02
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (159 bp):
ATTCTTTTCAAGACTAGGATCCGAAAACACAGTCCCTTCATTAGGATACATGACATTGATGCTTT
GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
AGCAAACATGAATACTCATACTAATCCCT
Found at i:44757 original size:348 final size:347
Alignment explanation
Indices: 44100--44764 Score: 867
Period size: 348 Copynumber: 1.9 Consensus size: 347
44090 TCTCTTAAAT
* * *
44100 AAGACAAACATGAATACTCATACTAATCCCTTTTTTTTTCAAGATTAGGCACCATAAACATAGTC
1 AAGACAAACATAAATACTCATACTAATCCCATTCTTTTTCAAGATTAGGCACCATAAACATAGTC
* * ** *
44165 TTCTCATTAGGATACACGATATTAGTGCTTTGGTTTTGCAAGAAAGGTTTTTTTTCCCACCAATT
66 CTCTCATTAGGATACACGACATTAGTGCTTTGGTTTAACAAGAAAGG-TCTTTTTCCCACCAATT
* * * * * *
44230 TTTGTAAAGTTTAGCTTCATTACTCAATTGAGACAAACATGGATTCTCGTATTGATCTTCAATCA
130 TTTGTAAAGTTAAGCTT-ATTACTCAAATGAGACAAAAATGGATTCTAGTAATGATCATCAATCA
* * * * *
44295 TTTTTTGATTAGGCACTATAAACACGTTCTCCTCATTAGGATAATTGATATTAATGATTTTCTTT
194 TTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAGTGATATTAATGATTTTCCTT
*
44360 TGCATGGAAATCTTTACTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAAAAAACAAG
259 TGCATGGAAATCTTTACTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCCCTTAAAAAAACAAG
44425 CATCAATTCCCATAAACATAAAAA
324 CATCAATTCCCATAAACATAAAAA
* *
44449 AAGATAAACATAAATACTCATACTAATTGCCATTCTTTTT-AAGATTAGGCACCATAAACATAGT
1 AAGACAAACATAAATACTCATACTAA-TCCCATTCTTTTTCAAGATTAGGCACCATAAACATAGT
* *
44513 CCTCTCATTAGGATACATGACATT-GATGCTTTGGTTTAACAAGAAAGG-CTTTTTCCTCACCAG
65 CCTCTCATTAGGATACACGACATTAG-TGCTTTGGTTTAACAAGAAAGGTCTTTTTCC-CACCAA
*
44576 TTTTTGTAAA-TCCTAAG-TT-TGTACCTCAAATGGGACAAAAATGGATTCTAGTAATGATCATC
128 TTTTTGTAAAGT--TAAGCTTAT-TA-CTCAAATGAGACAAAAATGGATTCTAGTAATGATCATC
* ** **
44638 ATTCATTTTGTAATTAGGCACTATAAACACATTCTTTTCATTAGGATAAGTGATATTGTTGATTT
189 AATCATTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAGTGATATTAATGATTT
** * * **
44703 TCCTTTGCATGGAAATCTTTTTTTTGTCC-TATTTTTCTTAACATCATTGTTTATCCCTTAAA
254 TCCTTTGCATGGAAATCTTTACTTTG-CCTTATTTTCCTTAAAATCAAAGTTTATCCCTTAAA
44765 TAAGAAAAGC
Statistics
Matches: 272, Mismatches: 36, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
346 1 0.00
347 10 0.04
348 157 0.58
349 94 0.35
350 10 0.04
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.38
Consensus pattern (347 bp):
AAGACAAACATAAATACTCATACTAATCCCATTCTTTTTCAAGATTAGGCACCATAAACATAGTC
CTCTCATTAGGATACACGACATTAGTGCTTTGGTTTAACAAGAAAGGTCTTTTTCCCACCAATTT
TTGTAAAGTTAAGCTTATTACTCAAATGAGACAAAAATGGATTCTAGTAATGATCATCAATCATT
TTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAGTGATATTAATGATTTTCCTTTG
CATGGAAATCTTTACTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCCCTTAAAAAAACAAGCA
TCAATTCCCATAAACATAAAAA
Found at i:45210 original size:826 final size:826
Alignment explanation
Indices: 43619--45265 Score: 3046
Period size: 826 Copynumber: 2.0 Consensus size: 826
43609 TTTTTCTCTT
*
43619 AAAAAAGATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACAT
1 AAAAAAGATAAACATAAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACAT
**
43684 AGTCCTCTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCA
66 AGTCCTCTCATTAGGATACATGACATTGATGCTTTGGTTTAACAAGAAAGGCTTTTTCCTCACCA
*
43749 GTTTTTGTAAAGTCTAAGTTCGTGCCTAAAATGGGACAAAAATGGATTCTAGTAATGATCATCAT
131 GTTTTTGTAAAGTCTAAGTTCGTACCTAAAATGGGACAAAAATGGATTCTAGTAATGATCATCAT
43814 TCATTTTGTAATTAGGCACTATAAACACATTCTTTTCATTAGGATAAGTGATATTGTTGATTTTC
196 TCATTTTGTAATTAGGCACTATAAACACATTCTTTTCATTAGGATAAGTGATATTGTTGATTTTC
43879 CTTTGCATGGAAATCTTTTTTTTGCCCTATTTTTCTTAACATCATTGTTTATCCCTTAAATAAGA
261 CTTTGCATGGAAATCTTTTTTTTGCCCTATTTTTCTTAACATCATTGTTTATCCCTTAAATAAGA
* *
43944 AAAGCGTTGATTCTCATAACAGTCTCCATTATTTTCACGATTGGGAACTTAAAAGACATTTCCTT
326 AAAGCGCTGATTCTCATAACAGTCTCCATTATTTTCACGATTAGGAACTTAAAAGACATTTCCTT
*
44009 AATTAGGATTACAAGACAATTATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTA
391 AATTAGGATTACAAGACAATTATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTA
* * *
44074 ATAGAATCATAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTTTTTTTTT
456 ATAGAATCACAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCTTTCTTTTT
44139 CAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTAGTGCTTTGGTTTTGC
521 CAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTAGTGCTTTGGTTTTGC
44204 AAGAAAGGTTTTTTTTCCCACCAATTTTTGTAAAGTTTAGCTTCATTACTCAATTGAGACAAACA
586 AAGAAAGGTTTTTTTTCCCACCAATTTTTGTAAAGTTTAGCTTCATTACTCAATTGAGACAAACA
*
44269 TGGATTCTCGTATTGATCTTCAATCATTTTTTGATTAGGCACTATAAACACGTTCTCCTCATTAG
651 TGGATTCTCGTATTGATCTTCAATCATTTTTTGATTAGGCACTATAAACACATTCTCCTCATTAG
* *
44334 GATAATTGATATTAATGATTTTCTTTTGCATGGAAATCTTTACTTTGCCTTATTTTCCTTAAAAT
716 GATAATTGATATTAATGATTTTCTTTCGCATGAAAATCTTTACTTTGCCTTATTTTCCTTAAAAT
44399 CAAAGTTTATCTCTTAAAAAAACAAGCATCAATTCCCATAAACATA
781 CAAAGTTTATCTCTTAAAAAAACAAGCATCAATTCCCATAAACATA
44445 AAAAAAGATAAACATAAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACAT
1 AAAAAAGATAAACATAAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACAT
44510 AGTCCTCTCATTAGGATACATGACATTGATGCTTTGGTTTAACAAGAAAGGCTTTTTCCTCACCA
66 AGTCCTCTCATTAGGATACATGACATTGATGCTTTGGTTTAACAAGAAAGGCTTTTTCCTCACCA
* *
44575 GTTTTTGTAAA-TCCTAAGTTTGTACCTCAAATGGGACAAAAATGGATTCTAGTAATGATCATCA
131 GTTTTTGTAAAGT-CTAAGTTCGTACCTAAAATGGGACAAAAATGGATTCTAGTAATGATCATCA
44639 TTCATTTTGTAATTAGGCACTATAAACACATTCTTTTCATTAGGATAAGTGATATTGTTGATTTT
195 TTCATTTTGTAATTAGGCACTATAAACACATTCTTTTCATTAGGATAAGTGATATTGTTGATTTT
*
44704 CCTTTGCATGGAAATCTTTTTTTTGTCCTATTTTTCTTAACATCATTGTTTATCCCTTAAATAAG
260 CCTTTGCATGGAAATCTTTTTTTTGCCCTATTTTTCTTAACATCATTGTTTATCCCTTAAATAAG
* *
44769 AAAAGCGCTGATTCTCATAACAGTCTCCATTCTTTTCAGGATTAGGAACTTAAAAGACATTTCCT
325 AAAAGCGCTGATTCTCATAACAGTCTCCATTATTTTCACGATTAGGAACTTAAAAGACATTTCCT
*
44834 TAATTAGGATTACAAGACAATTATGCTTTGGTCTCGCAAGCAAAGCTTTTCTTTCCACCGTTTTT
390 TAATTAGGATTACAAGACAATTATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
44899 AATAGAATCACAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCTTTCTTT
455 AATAGAATCACAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAAT-CCCTTTCTTT
* *
44964 TTCAGGATTAGGCATCATAAACATAGTCTTCTCATTAGGATACACGATATTAGTGCTTTGGTTTT
519 TTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTAGTGCTTTGGTTTT
45029 GCAAGAAAGG-TTTTTTTCCCACCAATTTTTGTAAAGTTTAGCTTCATTACTCAATTGAGACAAA
584 GCAAGAAAGGTTTTTTTTCCCACCAATTTTTGTAAAGTTTAGCTTCATTACTCAATTGAGACAAA
* * *
45093 CATGGATTCTCGTGTTGATCTTCAGTCATTTTTTGATTAGGCACTATAAACACATTCTTCTCATT
649 CATGGATTCTCGTATTGATCTTCAATCATTTTTTGATTAGGCACTATAAACACATTCTCCTCATT
45158 AGGATAATTGATATTAATGATTTTCTTTCGCATGAAAATCTTTACTTTGCCTTATTTTCCTTAAA
714 AGGATAATTGATATTAATGATTTTCTTTCGCATGAAAATCTTTACTTTGCCTTATTTTCCTTAAA
45223 ATCAAAGTTTATCTCTTAAAAAAACAAGCATCAATTCCCATAA
779 ATCAAAGTTTATCTCTTAAAAAAACAAGCATCAATTCCCATAA
45266 CAGTCTCCAT
Statistics
Matches: 795, Mismatches: 24, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
825 1 0.00
826 712 0.90
827 82 0.10
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.38
Consensus pattern (826 bp):
AAAAAAGATAAACATAAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACAT
AGTCCTCTCATTAGGATACATGACATTGATGCTTTGGTTTAACAAGAAAGGCTTTTTCCTCACCA
GTTTTTGTAAAGTCTAAGTTCGTACCTAAAATGGGACAAAAATGGATTCTAGTAATGATCATCAT
TCATTTTGTAATTAGGCACTATAAACACATTCTTTTCATTAGGATAAGTGATATTGTTGATTTTC
CTTTGCATGGAAATCTTTTTTTTGCCCTATTTTTCTTAACATCATTGTTTATCCCTTAAATAAGA
AAAGCGCTGATTCTCATAACAGTCTCCATTATTTTCACGATTAGGAACTTAAAAGACATTTCCTT
AATTAGGATTACAAGACAATTATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTA
ATAGAATCACAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCTTTCTTTTT
CAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTAGTGCTTTGGTTTTGC
AAGAAAGGTTTTTTTTCCCACCAATTTTTGTAAAGTTTAGCTTCATTACTCAATTGAGACAAACA
TGGATTCTCGTATTGATCTTCAATCATTTTTTGATTAGGCACTATAAACACATTCTCCTCATTAG
GATAATTGATATTAATGATTTTCTTTCGCATGAAAATCTTTACTTTGCCTTATTTTCCTTAAAAT
CAAAGTTTATCTCTTAAAAAAACAAGCATCAATTCCCATAAACATA
Found at i:45478 original size:159 final size:157
Alignment explanation
Indices: 45222--47709 Score: 761
Period size: 159 Copynumber: 15.7 Consensus size: 157
45212 TTTTCCTTAA
* * * * * * *
45222 AATCAAAGTTTATCTCTTAAAAAAACAAGCATCAATTCCCATAAC-AGTCTCCATTCTTTTCAAG
1 AATCAAAGTTTGTCTCTTAAAAAAGCAAACATGAATACTCAT-ACTAATCTCCATTCTTTTCAAG
* * * * *
45286 ATTTAGGACCCTAAACACATTCCCTT-TAATAGGATACATGACATCGATTCTTTGGTGTAGCAAG
65 A-TTGGGACCATAAACACATTCCCTTCT-TTAGGATACATGACATTGATGCTTTGGTGTAGCAAG
* *
45350 AAAAGCTTTTATTTCCGCCGTTTTTGATAT
128 AAAAGCTTTTATTTCCACCATTTTTGATAT
* * * *
45380 AATCAAAGTTTGTCTTTTAAATAAAGCAAACATTAATACTCATACTAATCTCTATTCTTTTCAAT
1 AATCAAAGTTTGTCTCTTAAA-AAAGCAAACATGAATACTCATACTAATCTCCATTCTTTTCAAG
* ** * * * *
45445 ACTGGGATCCGA-AAACACATTCCCTTCTTTAGGATACAAAACATTAAAGCTTCGGTGTCA-TAA
65 ATTGGGA-CC-ATAAACACATTCCCTTCTTTAGGATACATGACATTGATGCTTTGGTGT-AGCAA
* *
45508 GAAAAGCTTTTCTTTCCACCATTTTTGATAG
127 GAAAAGCTTTTATTTCCACCATTTTTGATAT
* * * *
45539 AATCCAAGTTTTTCTCTTAAAAAAGATAAACATGAATACTCATACTAAT-TGCCATTCTTTTTAA
1 AATCAAAGTTTGTCTCTTAAAAAAG-CAAACATGAATACTCATACTAATCT-CCATTCTTTTCAA
* * * * * *
45603 GATTAGGCACCATAAACATAGT-CCTCTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAA
64 GATT-GGGACCATAAACACATTCCCT-TCTTTAGGATACATGACATTGATGCTTTGGTGTAGCAA
* *
45667 GAAAGGC-TTT-TTCCTCACCAGTTTTTG-TAT
127 GAAAAGCTTTTATTTC-CACCA-TTTTTGATAT
* * * * ** * * * * *
45697 AGTCTAAGTTCGTGC-C-TCAAATGGCACAAAAATGGATTCT-AGTAATGATCAT-CATTCATTT
1 AATCAAAGTTTGT-CTCTTAAAAAAG--CAAACATGAATACTCA-TACTAATC-TCCATTC-TTT
** * * * * * * * * *
45758 TGTA-ATTAGGCACTATAAACACATTCTCC-TCATTCGGATA-ATTGATATTAATGATCTT-CTT
60 TCAAGATT-GGGACCATAAACACATTC-CCTTCTTTAGGATACA-TGACATTGATGCT-TTGGTG
* * * * ** *** *
45819 TTGCATGGAAATC-TTTACTTTGCC-TTATTTTCCTTAA
121 TAGCAAGAAAAGCTTTTA-TTT-CCACCATTTTTGATAT
* * * * * * * * *
45856 AATCAAAGTTTATCTTTTAAAAAAACAAGCATTAATTCCCATAAC-AGTGTCCATTCTTTTCAAG
1 AATCAAAGTTTGTCTCTTAAAAAAGCAAACATGAATACTCAT-ACTAATCTCCATTCTTTTCAAG
* * * *
45920 ATTTGGGGCCATAAACACATTCCCTT-TAATAGGATACATGACATCGATTCTTTGGTGTAGCAAG
65 A-TTGGGACCATAAACACATTCCCTTCT-TTAGGATACATGACATTGATGCTTTGGTGTAGCAAG
*
45984 AAAAGCTTTTATTTCCTCCATTTTTGATAT
128 AAAAGCTTTTATTTCCACCATTTTTGATAT
* * * *
46014 AATCGAAGTTTGTCTTTTAAATAAAGCAAACATTAATACTCATACTAATC-CCTATTCTTTTCGA
1 AATCAAAGTTTGTCTCTTAAA-AAAGCAAACATGAATACTCATACTAATCTCC-ATTCTTTTCAA
* * * ** * * * *
46078 GACTGGGATC-TGGAAGCACATTCCCTTCTTTAGGATACAAAACATTAACGCTTTGGTGTCGTAA
64 GATTGGGACCAT--AAACACATTCCCTTCTTTAGGATACATGACATTGATGCTTTGGTGTAGCAA
* * *
46142 GGAAAGCTTTTCTTTCCACCATTTTTGATAG
127 GAAAAGCTTTTATTTCCACCATTTTTGATAT
* * *
46173 AATCAAAGTTTTTCTCTTAAAAAAGATAAACATGAATACTCATACTAAT-TGCCATTCTTTTTAA
1 AATCAAAGTTTGTCTCTTAAAAAAG-CAAACATGAATACTCATACTAATCT-CCATTCTTTTCAA
* * * * *
46237 GATTAGGCACCATAAACATAGT-CCTCTCATTAGGATACATGACATTGATGCTTTGGTTTAGCAA
64 GATT-GGGACCATAAACACATTCCCT-TCTTTAGGATACATGACATTGATGCTTTGGTGTAGCAA
* *
46301 GAAAGGC-TTT-TTCCTCACCAGTTTTTG-TA-
127 GAAAAGCTTTTATTTC-CACCA-TTTTTGATAT
* * ** * * * * * * * * *
46330 AAGTCTAAGTTCGTGACTCAAATAGGACAAAAATGGAT-TTTAGTAATGATCAT-CATTCATTTT
1 AA-TCAAAGTTTGTCTCTTAAAAAAG-CAAACATGAATACTCA-TACTAATC-TCCATTC-TTTT
** * * * * * * **
46393 GTA-ATTAGGCG-CTATAAACACATT-CTTTTTATTAGGATA-AGTGATATTGTTGATTTTCCT-
61 CAAGATT-GG-GACCATAAACACATTCCCTTCT-TTAGGATACA-TGACATTGATG-CTTTGGTG
* * * * * * *
46453 TTGCATGGAAATCTTTTTTTTGCC-CTATTTTT-CT-T
121 TAGCAAGAAAAGCTTTTATTT-CCACCATTTTTGATAT
** * * * * * * * *
46488 AACGTCATTGTTTATCCCTTAAATAAGAAAAACGTTG-ATTCTCATAAC-AGTCTCCATTATTTT
1 AA--TCAAAGTTTGTCTCTTAAAAAAG-CAAAC-ATGAATACTCAT-ACTAATCTCCATTCTTTT
* * * * * * ** * *
46551 CAGGAATGGGAACTTAAAAGACATTTCCTTAATTAGGATTACAAGACAATT-ATGCTTTGGTGTC
61 CAAGATTGGGACCAT-AAACACATTCCCTTCTTTAGGA-TACATGAC-ATTGATGCTTTGGTGTA
* *
46615 GCAAGAAAAGCTTTTATTTCCACCATTTTTAATAG
123 GCAAGAAAAGCTTTTATTTCCACCATTTTTGATAT
* * * * * * * *
46650 AATCACAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTACTCCCCTTTGTTTTTCAG
1 AATCAAAGTTTGTCTCTTAAAAAAG-CAAACATGAATACTCATACTAATCTCCATT-CTTTTCAA
* * * * * *
46715 GATTAGGCACCATAAACATAGT--CTTCTCATTAGGATACATGATATT-AGTGCTTTTGTTTCA-
64 GATT-GGGACCATAAACACATTCCCTTCT--TTAGGATACATGACATTGA-TGCTTTGGTGT-AG
*
46776 CAAGAAATG-TTTT-TTTCCCACCAATTTTTG-TA-
124 CAAGAAAAGCTTTTATTT-CCACC-ATTTTTGATAT
** * * *** * * * * * * *
46808 AAGT-TTAGCTTTAT-TACTCAATTGAGACAAACATGGATTCTCGTATTGATCTTCAGTCATTTT
1 AA-TCAAAG-TTTGTCT-CTTAAAAAAG-CAAACATGAATACTCATACTAATCTCCATTC-TTTT
** * * * * * * ** * *
46871 -TTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATA-ATTGATATTAATGATTTTCTTTT
61 CAAGATT-GGGACCATAAACACATTC-CCTTCTTTAGGATACA-TGACATTGATGCTTTGGTGTA
* * * ** *** *
46933 GCATGGAAATC-TTTACTTTGCC-TTATTTTCCTTAA
123 GCAAGAAAAGCTTTTA-TTT-CCACCATTTTTGATAT
* * * * * * * * *
46968 AATCAAAGTTTATCGCTTAAAAAAACAAGCATCAATTCCCATAAC-AGTCTCTATTCTTTTCAAG
1 AATCAAAGTTTGTCTCTTAAAAAAGCAAACATGAATACTCAT-ACTAATCTCCATTCTTTTCAAG
** * * *
47032 ATTTGGGACCATAAACACATTTTCTTCTTTAGGATACATGACATTGAAGCTTTGGTGTTGTAAGA
65 A-TTGGGACCATAAACACATTCCCTTCTTTAGGATACATGACATTGATGCTTTGGTGTAGCAAGA
* * *
47097 ATAGCATTTT-TTTCCACCTTTTTTTGATAG
129 AAAGC-TTTTATTTCCACC-ATTTTTGATAT
* * * * *
47127 AATCAAAGTTTTTCTCTTATAAAAG-ACACATGAATACTCATACTAATCCCCATTCCTTTT-AGG
1 AATCAAAGTTTGTCTCTTAAAAAAGCAAACATGAATACTCATACTAATCTCCATT-CTTTTCAAG
* * ** * * *
47190 ATTAGGCACCATAAACATAGTTTTCTT-TTTAGTATACACGACATTGATGCTTTGGT-TCGCAAG
65 ATT-GGGACCATAAACACA-TTCCCTTCTTTAGGATACATGACATTGATGCTTTGGTGTAGCAAG
* * *
47253 -AAAGGTTTT-TTCCCACCAAATTTTG-TA-
128 AAAAGCTTTTATTTCCACC-ATTTTTGATAT
* * * * ** ** * * * * * *
47280 AAGTCTAAGTTCGAGC-CTCAAATGAGACAAAGGTGGATTCT-AGTAATTATCTTCATTCATTTG
1 AA-TCAAAGTTTG-TCTCTTAAAAAAG-CAAACATGAATACTCA-TACTAATCTCCATTC-TTTT
** * * ** * * * * ** * *
47343 GTA-ATTAGGCACTATAAACACATTCTTTTCATTAGGATA-AGTGATATCGATGATTTTCTTTTG
61 CAAGATT-GGGACCATAAACACATTCCCTTCTTTAGGATACA-TGACATTGATGCTTTGGTGTAG
* * * ** ** *
47406 CATGGAAATCTTGTT-TTTGCC-TTATTTTTCTTAA
124 CAAGAAAAGCTT-TTATTT-CCACCATTTTTGATAT
* * * * ** * **
47440 AATCAAAGTTTATCCCTTAAATAAGACAAGCACCAATTCTTGTAAC-AATCTCCATTCTTTTCAA
1 AATCAAAGTTTGTCTCTTAAAAAAG-CAAACATGAATACTCAT-ACTAATCTCCATTCTTTTCAA
* * * * * * * *
47504 AATTGGGAACCAAAAACACATTCCCTTCATTAGGATGCATGGCATTAATGCTTTGGTATTGCAAG
64 GATTGGG-ACCATAAACACATTCCCTTCTTTAGGATACATGACATTGATGCTTTGGTGTAGCAAG
* * *
47569 AAAAGCTTTTCTTTCCACCATTTTTTATAG
128 AAAAGCTTTTATTTCCACCATTTTTGATAT
* * * * *
47599 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCTTTCTTTTCATG
1 AATCAAAGTTTGTCTCTTAAAAAAG-CAAACATGAATACTCATACTAATCTCCATTCTTTTCAAG
* * * * *
47664 ATTAGGCACTATAAACATAAT-CTTCTCTTTAGGATACATGACATTG
65 ATT-GGGACCATAAACACATTCCCT-TCTTTAGGATACATGACATTG
47710 TTATCTTGGT
Statistics
Matches: 1687, Mismatches: 492, Indels: 301
0.68 0.20 0.12
Matches are distributed among these distances:
153 2 0.00
154 15 0.01
155 25 0.01
156 60 0.04
157 55 0.03
158 553 0.33
159 786 0.47
160 153 0.09
161 31 0.02
162 7 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (157 bp):
AATCAAAGTTTGTCTCTTAAAAAAGCAAACATGAATACTCATACTAATCTCCATTCTTTTCAAGA
TTGGGACCATAAACACATTCCCTTCTTTAGGATACATGACATTGATGCTTTGGTGTAGCAAGAAA
AGCTTTTATTTCCACCATTTTTGATAT
Found at i:45768 original size:634 final size:627
Alignment explanation
Indices: 44797--62602 Score: 7597
Period size: 634 Copynumber: 28.0 Consensus size: 627
44787 AACAGTCTCC
* * * * * **
44797 ATTCTTTTCAGGATTAGGAACTTAAAAGACATTTCCTTAATTAGGATTACAAGACAATT-ATGCT
1 ATTCTTTTCAAGATT-GGGACCTAAAACACATTCCCTTCTTTAGGA-TACAAGAC-ATTAATGCT
* * * * * *
44861 TTGGTCTCGCAAGCAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCACAGTTTATCTCTTAAAT
63 TTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCA-AGTTTTTCTCTTAAAT
* * * * *
44926 AAGACAAACATGAATACTCACACTAATCCCCTTTCTTTTTCAGGATTAGGCATCATAAACATAGT
127 AAGACAAACATGAATACTCATACTAAT-TCCATTCTTTTT-AAGATTAGGCACCATAAACATAGT
* * * *
44991 CTTCTCATTAGGATACACGATATT-AGTGCTTTGGTTTTGCAAGAAAGGTTTTTTTCC-CACCAA
190 CCTCTCATTAGGATACATGATATTGA-TGCTTTGGTTTTGCAAGAAAGG-CTTTTTCCTCACCAG
* * ** * * ** * *
45054 TTTTTGTAAAGT-TTAGCTTCATTACTCAATTGAGACAAACATGGATTCTCGTGTTGATCTTCAG
253 TTTTTGTAAAGTCTAAG-TTCGTGCCTCAAATG-GACAAACATGGATTCTAGTAATGATCATCAT
* * *
45118 TCATTTTTTGATTAGGCACTATAAACACATTCTTCTCATTAGGATAATTGATATTAATGATTTTC
316 TCATTTTGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATAA-TGATATTGATGATTTTC
*
45183 TTTCGCATGAAAATCTTTACTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAA-AAAA
380 TTT-GCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAAA
* ** * * *
45247 CAAGCATCAATTCCCATAACAGTCTCCATTCTTTTCAAGATTTAGGACCCTAAACACATTCCCTT
444 CAAACATGGATTCTCATAACAGTCTCCATTCTTTTCAAGA-TTGGGACCATAAACACATTCCCTT
* * * *
45312 TAATAGGATACATGACATCGATTCTTTGGTGTAGCAAGAAAAGCTTTTATTTCCGCCGTTTTTGA
508 TAATAGGATACATGACATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGA
*
45377 TATAATCAAAGTTTGTCTTTTAAATAA-AGCAAACATTAATACTCATACTAATCTCT
573 TA-AATCAAAGTTTGTCTTTTAAATAAGA-CAAACATTAATACTCATACTAATCCCT
* * * * * *
45433 ATTCTTTTCAATACTGGGATCCGAAAACACATTCCCTTCTTTAGGATACAAAACATTAAAGCTTC
1 ATTCTTTTCAAGATTGGGA-CCTAAAACACATTCCCTTCTTTAGGATACAAGACATTAATGCTTT
* *
45498 GGTGTCATAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCCAAGTTTTTCTCTTAAAAAA
65 GGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT-CAAGTTTTTCTCTTAAATAA
*
45563 GATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
129 GACAAACATGAATACTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
* *
45628 CTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
193 CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
* *
45693 GTATAGTCTAAGTTCGTGCCTCAAATGGCACAAAAATGGATTCTAGTAATGATCATCATTCATTT
258 GTAAAGTCTAAGTTCGTGCCTCAAATGG-ACAAACATGGATTCTAGTAATGATCATCATTCATTT
* * * *
45758 TGTAATTAGGCACTATAAACACATTCTCCTCATTCGGATAATTGATATTAATGATCTTCTTTTGC
322 TGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATAA-TGATATTGATGATTTTC-TTTGC
* * * *
45823 ATGGAAATCTTTACTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTTTTAAA-AAAACAAGCA
385 ATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAAACAAACA
** * * *
45887 TTAATTCCCATAACAGTGTCCATTCTTTTCAAGATTTGGGGCCATAAACACATTCCCTTTAATAG
450 TGGATTCTCATAACAGTCTCCATTCTTTTCAAGA-TTGGGACCATAAACACATTCCCTTTAATAG
* * *
45952 GATACATGACATCGATTCTTTGGTGTAGCAAGAAAAGCTTTTATTTCCTCCATTTTTGATATAAT
514 GATACATGACATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATA-AAT
*
46017 CGAAGTTTGTCTTTTAAATAA-AGCAAACATTAATACTCATACTAATCCCT
578 CAAAGTTTGTCTTTTAAATAAGA-CAAACATTAATACTCATACTAATCCCT
* * * * * * *
46067 ATTCTTTTCGAGACTGGGATCTGGAAGCACATTCCCTTCTTTAGGATACAAAACATTAACGCTTT
1 ATTCTTTTCAAGATTGGGACCT-AAAACACATTCCCTTCTTTAGGATACAAGACATTAATGCTTT
** * *
46132 GGTGTCGTAAGGAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTTTCTCTTAAAAAA
65 GGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATC-AAGTTTTTCTCTTAAATAA
*
46197 GATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
129 GACAAACATGAATACTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
* *
46262 CTCATTAGGATACATGACATTGATGCTTTGGTTTAGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
193 CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
* * *
46327 GTAAAGTCTAAGTTCGTGACTCAAATAGGACAAAAATGGATTTTAGTAATGATCATCATTCATTT
258 GTAAAGTCTAAGTTCGTGCCTCAAAT-GGACAAACATGGATTCTAGTAATGATCATCATTCATTT
* * * *
46392 TGTAATTAGGCGCTATAAACACATTCTTTTTATTAGGATAAGTGATATTGTTGATTTTCCTTTGC
322 TGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATAA-TGATATTGATGATTTT-CTTTGC
* * * * ** ** *
46457 ATGGAAATCTTTTTTTTGCCCTATTTTTCTTAACGTCATTGTTTATCCCTTAAATAAGAA-AAAC
385 ATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAA-AACAAAC
* * * * * * * * *
46521 GTTGATTCTCATAACAGTCTCCATTATTTTCAGGAATGGGAACTTAAAAGACATTTCC-TTAATT
449 ATGGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGACCAT-AAACACATTCCCTTTAA-T
* * *
46585 AGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTAATA
512 AGGA-TACATGAC-ATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATA
* * * * *
46649 GAATCACAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTACTCCCCT
575 -AATCAAAGTTTGTCTTTTAAATAAGACAAACATTAATACTCATACTAAT-CCCT
* * * * * * * *
46704 -TTGTTTTTCAGGATTAGGCACC-ATAAACATAGT--CTTCTCATTAGGATACATGATATTAGTG
1 ATT-CTTTTCAAGATT-GGGACCTA-AAACACATTCCCTTCT--TTAGGATACAAGACATTAATG
* * * **
46765 CTTTTGTTTCACAAGAAATG-TTTT-TTTCCCACCAATTTTTG-TA-AAGTTTAGCTTTATTACT
61 CTTTGGTGTCACAAGAAAAGCTTTTCTTT-CCACC-ATTTTTGATAGAA-TCAAG-TTT-TT-CT
* * * * * * * * * * *
46826 C--AATTGAGACAAACATGGATTCTCGTATTGATCTTCAGTCATTTTT-TGATTAGGCACTATAA
120 CTTAAATAAGACAAACATGAATACTCATACTAAT-TCCATTC-TTTTTAAGATTAGGCACCATAA
* * * * ** * * *
46888 ACACA-TTCTCCTCATTAGGATA-ATTGATATTAATGATTTTCTTTTGCATGGAAA-TC-TTTAC
183 ACATAGTCCT-CTCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCA-AGAAAGGCTTTTTC
* ** * * ** * *** * ** *
46949 TTTGCCTTA-TTTTCCT-TAAAATCAAAGTTTAT-CGCTTAAAAAAACAAGCATCAATTCCCA-T
245 CTCACC--AGTTTT--TGTAAAGTCTAAGTTCGTGC-CTCAAATGGACAAACATGGATT-CTAGT
* ** * * * *
47010 AA-CAGTC-TCTATTC-TTTTCAAGATTTGGGACCATAAACACATT-TTCTTCTTTAGGATACAT
304 AATGA-TCATC-ATTCATTTTGTA-ATTAGGCACTATAAACACATTCTTC-TCATTAGGATA-AT
* * * ** * * * * * *** *
47071 GACATTGAAGCTTTGGTGTTGTAAGAATAGCATTTT-TTTCCACCTT-TTTTTGATAGAATCAAA
364 GATATTGATGATTTTCT-TTGCATGAAAATC-TTTTCTTT--GCCTTATTTTCCTTAAAATCAAA
* * * * * * * *
47134 GTTTTTCTCTT--ATAAAAGACACATGAATACTCAT-ACTAATCCCCATTCCTTTT-AGGATTAG
425 GTTTATCTCTTAAATAAAACAAACATGGATTCTCATAAC-AGTCTCCATT-CTTTTCAAGATT-G
* * ** * * * *
47195 GCACCATAAACATAGTTTTCTTT-TTAGTATACACGACATTGATGCTTTGGT-TCGCAAG-AAAG
487 GGACCATAAACACA-TTCCCTTTAATAGGATACATGACATTGATTCTTTGGTGTCGCAAGAAAAG
* * * * * * * * * ** ** *
47257 GTTTT-TTCCCACCAAATTTTG-TAAAGTCTAAGTTCGAGC-CTCAAATGAGACAAAGGTGGATT
551 CTTTTATTTCCACC-ATTTTTGATAAA-TCAAAGTTTG-TCTTTTAAATAAGACAAACATTAATA
* * *
47319 CT-AGTAATTAT-CTT
613 CTCA-TACTAATCCCT
*** * ** * * * **
47333 CATTCATTTGGTA-ATTAGG-CACTATAAACACATTCTTTTCATTAGGATA-AGTGATATCGATG
1 -ATTC-TTTTCAAGATTGGGAC-CTA-AAACACATTCCCTTCTTTAGGATACA-AGACATTAATG
* ** * ** * * * ** ** * * *
47395 ATTTTCTTTTGCATGGAAATCTTGTT-TTTGCC-TTATTTTTCTTAAAATCAAAGTTTATCCCTT
61 CTTTGGTGTCACAAGAAAAGCTT-TTCTTT-CCACCATTTTTGATAGAATC-AAGTTTTTCTCTT
* ** * ** * * * * *
47458 AAATAAGACAAGCACCAATTCTTGTAAC-AATCTCCATTCTTTTCAAAATTGGGAACCAAAAACA
123 AAATAAGACAAACATGAATACTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACA
* * * ** * * * *
47522 CATTCC-CTTCATTAGGATGCATGGCATTAATGCTTTGGTATTGCAAGAAAAGC-TTTTCTTTCC
186 TAGTCCTC-TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTC-CT-C
* * * * * * * * *
47585 ACCATTTTTTATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAGTC-A-TACTA
248 ACCAGTTTTTGTA-AAGTCTAAGTTCGTGC-CTCAAAT-GGACAAACATGGAT--TCTAGTAATG
** * * * * * * *
47646 ATCCCCTTTC-TTTTCATGATTAGGCACTATAAACATAATCTTCTCTTTAGGATACATGACATTG
308 ATCATCATTCATTTT-GTAATTAGGCACTATAAACACATTCTTCTCATTAGGATA-ATGATATTG
* ** * * * *** * * * ** *
47710 -TTATCTTGGTTTCGCGTGAAGAGCATTTTC-CCACC-AATTTTTC-TAAAGTTTAAGTTTGTGC
371 ATGAT-TTTCTTT-GCATGAAAATC-TTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTAT-C
* ** * * * * * * ** * *
47771 -CTCAAATAGGACAAAAATGGATTGT-AGTTA-TGATCTTCGTTCATTTTGTA-ATTAGGCACTA
432 TCTTAAATAAAACAAACATGGATTCTCA-TAACAG-TCTCCATTC-TTTTCAAGATT-GGGACCA
* ** ** * * ** * * * * *
47832 CAGTCTTATTCTCCTCCTT-A-A-GATA-AGTGATATTG-TTGATTTTCTTTTGCATGTAAATCT
493 TAAACACATTC-CCT--TTAATAGGATACA-TGACATTGATT-CTTTGGTGTCGCAAGAAAAGCT
* ** * * ** ** * ** **
47892 TTT-CTTCGC-CCTATTTTTCTTAAAATGAAGGTTCATCCCTTAAATAAGACAAGCATCGATTTT
553 TTTATTTC-CACC-ATTTTTGAT-AAATCAAAGTTTGTCTTTTAAATAAGACAAACATTAATACT
* *
47955 CGAAATACT-GT-GC-
615 C---ATACTAATCCCT
* * * * * * *
47968 AATATTTTCAGGATTGGGAACCTAAAATACATTCCCTTCATTAGGATACATGACATTGATGCTTT
1 ATTCTTTTCAAGATTGGG-ACCTAAAACACATTCCCTTCTTTAGGATACAAGACATTAATGCTTT
* * * *
48033 GGTGTCACAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAGTCAAAGTTTGTCTCCTAAATAA
65 GGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATC-AAGTTTTTCTCTTAAATAA
* * * * * * * *
48098 GGCAAATATAAATACTCATACT-ATTCCCCATTCTTTTCAGGATTAGGCACTATAAAAATAGTCT
129 GACAAACATGAATACTCATACTAATT--CCATTCTTTTTAAGATTAGGCACCATAAACATAGTCC
* * * * * * *
48162 TCTTATTTGGATTCACGATATTGGA-GCATTGATTTTGCAAGAAAGGCATTTTTCC-CACCA-CT
192 TCTCATTAGGATACATGATATT-GATGCTTTGGTTTTGCAAGAAAGGC-TTTTTCCTCACCAGTT
* * * * *
48224 TTTGTAAGGT-TAAGTTCGTGCCTCAAATGTGACAAACGTGGATTCTAGTAATGAGCTTCTTTCA
255 TTTGTAAAGTCTAAGTTCGTGCCTCAAATG-GACAAACATGGATTCTAGTAATGATCATCATTCA
* * * * * *
48288 TTTTGTTATTGGGCACTATAAACACATCCCCCTCTC-TAAGG-TAAATGATGTTGATGATTTTCT
319 TTTTGTAATTAGGCACTATAAACACAT--TCTTCTCATTAGGAT-AATGATATTGATGATTTTC-
* * * * * * *
48351 TTTGCATGAAAATC-TTTATTTGCCTGATTTTCCTTAAGATCAAAGTTT-GCCCTTTGAATAAGA
380 TTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTC-TTAAATAAAA
* * * * * * *
48414 CAAGCATCGATTGTTATAAAAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTT
444 CAAACATGGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGG-ACCATAAACACATTCCCTT
* * * * * * * *
48479 CATTAGGATATAAGACATTGATGCTTTGGTGT-GCAAGAAAAGCTTCTCTTTCCACCGTTTTTGA
508 TAATAGGATACATGACATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGA
* * * * * * *
48543 TAGAATCAATGTGTG-CCTCTAAGATAAGGCAATCATGAATACTCATACTAATCCCT
573 TA-AATCAAAGTTTGTCTTTTAA-ATAAGACAAACATTAATACTCATACTAATCCCT
* * * * * *
48599 ATTCTTTTCAAGATTAGGCACC-ATAAACATAGTGT-TC-TCATTAGGATACAAGATATTGATGC
1 ATTCTTTTCAAGATT-GGGACCTA-AAACACA-T-TCCCTTCTTTAGGATACAAGACATTAATGC
* ** * * * * * *
48661 TTTGGTTTTGCAA-ATAAG-GTTT-TTTACAGTCAAATTTTT-ATA-AAGTCTAAGTTCGTGC-C
62 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCA--C-CATTTTTGATAGAA-TC-AAGTT-TTTCTC
* * * * * * * * * * *
48720 TCAAATGAA-ACCAACATGGATTCT-AGTAATGATCTTCTTTCATTTTGAGATTAGGCACTATGA
121 TTAAAT-AAGACAAACATGAATACTCA-TACTAAT-TCCATTCTTTTTAAGATTAGGCACCAT-A
* * * * * * *
48783 GTACGTTA-T-C-CTCATTAGGATA-ACTGATATTAATGATTT--TCTTCCACATGGAAA-TC-T
182 -AAC-ATAGTCCTCTCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCA-A--GAAAGGCTT
* *** * * * * * * * ** ** * *
48840 TTTCTTTGTC-GTATTTTCCTAAAATCAAAGTTCATCCCTGAAATAAGACAGGCACCGATTATCG
241 TTTCCTCACCAGT-TTTT-GTAAAGTCTAAGTTCGTGCCTCAAAT-GGACAAACATGGATTCTAG
** * ** * * * * *
48904 TAACAATC-TCCACTC-TTTTCAAGATTGGGAACCAAAAACACATTC-CCTTCATTAGGATACAT
303 TAATGATCAT-CATTCATTTTGTA-ATTAGGCACTATAAACACATTCTTC-TCATTAGGATA-AT
* * * ** * * * * * *
48966 CACATTGATGCTTTGGTGT-CATAAGAAAAGCTTTTCTTTCCACCGTT-TTTT-ATT-GAATCGA
364 GATATTGATGATTTTCTTTGCAT--GAAAATCTTTTCTTT--GCC-TTATTTTCCTTAAAATCAA
* * * * ** * * *
49027 AGTTTGTCTCCTAAATAAGACAAACATGAATAGTCAT-GCTAATC-CCTATT-TTTTCAGGATTT
424 AGTTTATCTCTTAAATAAAACAAACATGGATTCTCATAAC-AGTCTCC-ATTCTTTTCAAGA-TT
* * * * * ** * * * *
49089 GGCACCATAAACATAGT-CTTCTTATTAGGATACGCGATATTGATAT-TTTGGTTTCGTACGAAA
486 GGGACCATAAACACATTCCCT-TTAATAGGATACATGACATTGAT-TCTTTGGTGTCGCAAGAAA
* * * * * *
49152 GGC-ATT-TTTCCTACCAATTTTT-ATAAAGTCTAAGTTCGTGC-CTCAAATAAGACAAAC-TTA
549 AGCTTTTATTTCC-ACC-ATTTTTGATAAA-TCAAAGTTTGT-CTTTTAAATAAGACAAACATTA
* * * *
49212 GATTCT-AGTAATGAT-CTT
610 -ATACTCA-TACTAATCCCT
* * * * * * * **
49230 CATTCATTTGCTA-ATTAGG-CACTATAATCACATTCTCC-TCATTAGGATA-AGTGATATTGTT
1 -ATTC-TTTTCAAGATTGGGAC-CTA-AAACACATTC-CCTTCTTTAGGATACA-AGACATTAAT
* ** * * * * * ** * ** *
49291 GATTTTCTTTTACATGGAAATCTTTTCTTTGCC-CCATTTTCCATA-AATGAAAGTTCATCCCTT
60 GCTTTGGTGTCACAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAGAAT-CAAGTTTTTCTCTT
* ** * * * * * *
49354 AAATAGGA-AAAGCATCG-ATTTTCAAAATAGTCTCCATTATTTTCAAGATTAGGAACC-TAAAA
123 AAATAAGACAAA-CAT-GAATACTCATACTAAT-TCCATTCTTTTTAAGATTAGGCACCAT-AAA
* * * * * * * ** * **
49416 CACATTTCAT-TCATTAAGATACATGACATTAATGCTTTGGTATCACAAGAAATGCTTTTCTTTT
184 CATA-GTCCTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTT-TCCT
* * * * * *
49480 CACCA-TTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAT-TCA-TAC
247 CACCAGTTTTTG-TA-AAGTCTAAGTTCGTGC-CTCAAAT-GGACAAACATGGAT-TCT-AGTAA
* * ** * * * * * *
49540 T-ATTC-CCTGTTCTATTCAG-GATTCA-GCACCATAAATATAGTT-TCCTCATTAGGATACACG
306 TGA-TCATC-ATTC-ATTTTGTAATT-AGGCACTATAAACACA-TTCTTCTCATTAGGATA-ATG
** * * ** ** ** * * *
49600 ATATTGGCGCTTTGAT-TTTG-TTGGAAAGGCTTTT-TTCCCACCAATTTT-CGTAAAGTCTAAG
365 ATATTGATGATTT--TCTTTGCAT-GAAAATCTTTTCTTTGC-CTTATTTTCCTTAAAATCAAAG
* * * * * * * * * * ***
49661 TTCATCCCTCAATTGAGACAAACAAGGATTCT-AGTAA-TGATCTTCTTTCATTTT-GTTATTAG
426 TTTATCTCTTAAATAAAACAAACATGGATTCTCA-TAACAG-TCTCCATTC-TTTTCAAGATT-G
* * * * * ** ** ** * * * * *
49723 GCACTATAAACACATTCCCTTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATC
487 GGACCATAAACACATTCCCTTTAATAGGATACATGACATTGATTCTTTGGTGTCGCAAGAAAAGC
* * ** * * * * * * *
49788 TTTTCTTTGTC-TGATTTTCT-TTAATATCAAAGTTCGCCGTTTAAATAAGACAAGCATTGATTC
552 TTTTATTT-CCACCATTTT-TGATAA-ATCAAAGTTTGTCTTTTAAATAAGACAAACATTAATAC
*
49851 TCATAAC-GAT-CCT
614 TCAT-ACTAATCCCT
* * * * *
49864 CATTCTTTGCAAGATTGGGAACCAAAAACACATTCCCTT-TATTAGGATACAAGTCTTTGATGCT
1 -ATTCTTTTCAAGATTGGG-ACCTAAAACACATTCCCTTCT-TTAGGATACAAGACATTAATGCT
* * ** *
49928 TTGGTGT-AGGAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCACTTAAA
63 TTGGTGTCA-CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA-GTTTTTCTCTTAAA
* * * *** *
49992 TAAGGCAAACATGAATACTCATTCTAATCCCCATTCTTTGCGAGATTAGGCACCAT-AACACAGT
126 TAAGACAAACATGAATACTCATACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATAGT
** * * *
50056 GTTCTCATTAGGATACATGATATTGATGCTTT-GTTCT-CATTG---GG-------GT-A-CA--
190 CCTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCA-AGAAAGGCTTTTTCCTCACCAGT
* * * *
50105 ---TGTAAAGTCTAAGTTCGTGCCTTAAATCGACAAACATGGACTCTAGTAATGATCTTCATTCA
254 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGGACAAACATGGATTCTAGTAATGATCATCATTCA
* * * * * * * *
50167 TTTT-AAGATTAGACACTATAAACACATTCTCCACTTTAGGATAATGATTTTAATGATTTCACTT
319 TTTTGTA-ATTAGGCACTATAAACACATTCTTCTCATTAGGATAATGATATTGATGATTT-TCTT
* * * **
50231 TGCA-CAGAAATATTTTCTTTGCCCTATTTTCC-TAAAATCAAAGTACATAC-CTTAAATAAAA-
382 TGCATGA-AAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTAT-CTCTTAAATAAAAC
* * *
50292 AAAGCATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTGGGAACC-TAAAACACATTCCCT
445 AAA-CATGGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGG-ACCAT-AAACACATTCCCT
* * * * * * *
50356 TTAATAGGATACATGAAATCGATCCTGTGGTGTAGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
507 TTAATAGGATACATGACATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTG
50421 ATATAATCAAAGTTTGTCTTTTAAATAA-AGCAAACATTAATACTCATACTAATCCCT
572 ATA-AATCAAAGTTTGTCTTTTAAATAAGA-CAAACATTAATACTCATACTAATCCCT
* * * * *
50478 ATTCTTTTCAAGACTAGGATCCGAAAACACATTCCCTTCTTTAGGATACAAAACATTAAAGCTTT
1 ATTCTTTTCAAGATTGGGA-CCTAAAACACATTCCCTTCTTTAGGATACAAGACATTAATGCTTT
** * * *
50543 GGTGTCGTAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAAAAA
65 GGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATC-AAGTTTTTCTCTTAAATAA
*
50608 GATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
129 GACAAACATGAATACTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
* *
50673 CTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
193 CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
* *
50738 GTAAAGTCTAAGTTCGTGCCTAAAATGGGACAAAAATGGATTCTAGTAATGATCATCATTCATTT
258 GTAAAGTCTAAGTTCGTGCCTCAAAT-GGACAAACATGGATTCTAGTAATGATCATCATTCATTT
* * *
50803 TGTAATTAGGCACTATAAACACATTCTTTTAATTAGGATAAGTGATATTGTTGATTTTCCTTTGC
322 TGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATAA-TGATATTGATGATTTT-CTTTGC
* * * * * ** * *
50868 ATGGAAATCTTTTTTTTGCCCTATTTTTCTTAACATCATTGTTTATCCCTTAAATAAGAA-AAGC
385 ATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAA-AACAAAC
* * * * * * *
50932 GTTGATTCTCATAACAGTCTCCATTATTTTCACA-ATTGGGAACTTAAAAGACATTTCC-TTAAT
449 ATGGATTCTCATAACAGTCTCCATTCTTTTCA-AGATTGGGACCAT-AAACACATTCCCTTTAA-
* * * * *
50995 TAGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTAAT
511 TAGGA-TACATGAC-ATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGAT
* * * *
51059 AGAATCATAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCT
574 A-AATCAAAGTTTGTCTTTTAAATAAGACAAACATTAATACTCATACTAATCCCT
* * * * * * * *
51114 TTTTTTTTCAAGATTAGGCACC-ATAAACATAGT--CTTCTCATTAGGATACACGATATTAGTGC
1 ATTCTTTTCAAGATT-GGGACCTA-AAACACATTCCCTTCT--TTAGGATACAAGACATTAATGC
* ** * ** *
51176 TTTGGTTTTGCAAG-AAAGGTTTT-TTTCCCACCAATTTTTG-TA-AAGTTTAGCTTCATTACTC
62 TTTGGTGTCACAAGAAAAGCTTTTCTTT-CCACC-ATTTTTGATAGAA-TCAAG-TT--TTTCTC
* * * * * * * * * * *
51237 --AATTGAGACAAACATGGATTCTCGTATTGATCTTCAATCATTTTT-TGATTAGGCACTATAAA
121 TTAAATAAGACAAACATGAATACTCATACTAAT-TCCATTC-TTTTTAAGATTAGGCACCATAAA
* * * * ** * * * *
51299 CA-CGTTCTCCTCATTAGGATA-ATTGATATTAATGATTTTCTTTTGCATGGAAA-TC-TTTACT
184 CATAGTCCT-CTCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCA-AGAAAGGCTTTTTCC
** * * ** * *** **
51360 TTGCCTTA-TTTTCCT-TAAAATCAAAGTTTAT-CTCTTAAAAAAACAAGCATCAATTCCCATAA
246 TCACC--AGTTTT--TGTAAAGTCTAAGTTCGTGC-CTCAAATGGACAA--A-C-A-T-GGAT--
* * * *
51422 ACATAAAAAAAGATAAACATAAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATA
298 TC-T------AG-T--A-AT---GA-TCAT-C--ATT--CA-T-TTTGT-A-ATTAGGCACTATA
* * * * * ** * * ** *
51487 AACATAGTCCTCTCATTAGGATACATGACATTGATGCTTTGGTTTAACAAGAAAGGCTTTTTCCT
339 AACACATTCTTCTCATTAGGATA-ATGATATTGATGATTTTCTTT-GCATGAAAATC-TTTTCTT
** * * * *** *
51552 CACC--AGTTTT--TGT-AAATCCTAAGTTTGTAC-CTCAAATGGGACAAAAATGGATTCT-AGT
401 TGCCTTA-TTTTCCT-TAAAAT-CAAAGTTTAT-CTCTTAAATAAAACAAACATGGATTCTCA-T
* ** * * * *
51610 AA-TGATCAT-CATTCATTTTGTA-ATTAGGCACTATAAACACATT-CTTTTCATTAGGATA-AG
461 AACAG-TC-TCCATTC-TTTTCAAGATT-GGGACCATAAACACATTCCCTTT-AATAGGATACA-
* * ** * * * * * * * ** *
51670 TGATATTG-TTGATTTTCCT-TTGCATGGAAATCTTTTTTTTGTC-CTATTTTTCTTAACATCAT
520 TGACATTGATT--CTTTGGTGTCGCAAGAAAAGCTTTTATTT-CCACCATTTTTGATAA-ATCAA
* * ** ** * * *
51732 TGTTTATCCCTTAAATAAGA-AAAGCGCTGATTCTCATAAC-AGTCTCC-
581 AGTTTGTCTTTTAAATAAGACAAA-CATTAATACTCAT-ACTAATC-CCT
* * * * * **
51779 ATTCTTTTCAGGATTAGGAACTTAAAAGACATTTCCTTAATTAGGATTACAAGACAATT-ATGCT
1 ATTCTTTTCAAGATT-GGGACCTAAAACACATTCCCTTCTTTAGGA-TACAAGAC-ATTAATGCT
* * * * * *
51843 TTGGTCTCGCAAGCAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCACAGTTTATCTCTTAAAT
63 TTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCA-AGTTTTTCTCTTAAAT
* * * * *
51908 AAGACAAACATGAATACTCACACTAATCCCCTTTCTTTTTCAGGATTAGGCATCATAAACATAGT
127 AAGACAAACATGAATACTCATACTAAT-TCCATTCTTTTT-AAGATTAGGCACCATAAACATAGT
* * * *
51973 CTTCTCATTAGGATACACGATATT-AGTGCTTTGGTTTTGCAAGAAAGGTTTTTTTCC-CACCAA
190 CCTCTCATTAGGATACATGATATTGA-TGCTTTGGTTTTGCAAGAAAGG-CTTTTTCCTCACCAG
* * ** * * ** * *
52036 TTTTTGTAAAGT-TTAGCTTCATTACTCAATTGAGACAAACATGGATTCTCGTGTTGATCTTCAG
253 TTTTTGTAAAGTCTAAG-TTCGTGCCTCAAATG-GACAAACATGGATTCTAGTAATGATCATCAT
* * *
52100 TCATTTTTTGATTAGGCACTATAAACACATTCTTCTCATTAGGATAATTGATATTAATGATTTTC
316 TCATTTTGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATAA-TGATATTGATGATTTTC
*
52165 TTTCGCATGAAAATCTTTACTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAA-AAAA
380 TTT-GCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAAA
* ** * * *
52229 CAAGCATCAATTCCCATAACAGTCTCCATTCTTTTCAAGATTTAGGACCCTAAACACATTCCCTT
444 CAAACATGGATTCTCATAACAGTCTCCATTCTTTTCAAGA-TTGGGACCATAAACACATTCCCTT
* * * *
52294 TAATAGGATACATGACATCGATTCTTTGGTGTAGCAAGAAAAGCTTTTATTTCCGCCGTTTTTGA
508 TAATAGGATACATGACATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGA
*
52359 TATAATCAAAGTTTGTCTTTTAAATAA-AGCAAACATTAATACTCATACTAATCTCT
573 TA-AATCAAAGTTTGTCTTTTAAATAAGA-CAAACATTAATACTCATACTAATCCCT
* * * * * *
52415 ATTCTTTTCAATACTGGGATCCGAAAACACATTCCCTTCTTTAGGATACAAAACATTAAAGCTTC
1 ATTCTTTTCAAGATTGGGA-CCTAAAACACATTCCCTTCTTTAGGATACAAGACATTAATGCTTT
* *
52480 GGTGTCATAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCCAAGTTTTTCTCTTAAAAAA
65 GGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT-CAAGTTTTTCTCTTAAATAA
*
52545 GATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
129 GACAAACATGAATACTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
*
52610 CTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
193 CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
* *
52675 GTAAAGTCTAAGTTCGTGCCTAAAATGGGACAAAAATGGATTCTAGTAATGATCATCATTCATTT
258 GTAAAGTCTAAGTTCGTGCCTCAAAT-GGACAAACATGGATTCTAGTAATGATCATCATTCATTT
* * *
52740 TGTAATTAGGCACTATAAACACAATCTTTTCATTAGGATAAGTGATATTGTTGATTTTCCTTTGC
322 TGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATAA-TGATATTGATGATTTT-CTTTGC
* * * * ** * *
52805 ATGGAAATCTTTT-TTTGCCCTATTTTTCTTAACATCATTGTTTATCCCTTAAATAAGAA-AAGC
385 ATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAA-AACAAAC
* * * * * * *
52868 GTTGATTCTCATAACAGTCTCCATTATTTTCACA-ATTGGGAACTTAAAAGACATTTCC-TTAAT
449 ATGGATTCTCATAACAGTCTCCATTCTTTTCA-AGATTGGGACCAT-AAACACATTCCCTTTAA-
* * * * *
52931 TAGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTAAT
511 TAGGA-TACATGAC-ATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGAT
* * * *
52995 AGAATCATAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCT
574 A-AATCAAAGTTTGTCTTTTAAATAAGACAAACATTAATACTCATACTAATCCCT
* * * * * * * *
53050 TTTTTTTTCAAGATTAGGCACC-ATAAACATAGT--CTTCTCATTAGGATACACGATATTAGTGC
1 ATTCTTTTCAAGATT-GGGACCTA-AAACACATTCCCTTCT--TTAGGATACAAGACATTAATGC
* ** * ** *
53112 TTTGGTTTTGCAAG-AAAGGTTTT-TTTCCCACCAATTTTTG-TA-AAGTTTAGCTTCATTACTC
62 TTTGGTGTCACAAGAAAAGCTTTTCTTT-CCACC-ATTTTTGATAGAA-TCAAG-TT--TTTCTC
* * * * * * * * * * *
53173 --AATTGAGACAAACATGGATTCTCGTATTGATCTTCAATCATTTTT-TGATTAGGCACTATAAA
121 TTAAATAAGACAAACATGAATACTCATACTAAT-TCCATTC-TTTTTAAGATTAGGCACCATAAA
* * * * ** * * * *
53235 CA-CGTTCTCCTCATTAGGATA-ATTGATATTAATGATTTTCTTTTGCATGGAAA-TC-TTTACT
184 CATAGTCCT-CTCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCA-AGAAAGGCTTTTTCC
** * * ** * *** **
53296 TTGCCTTA-TTTTCCT-TAAAATCAAAGTTTAT-CTCTTAAAAAAACAAGCATCAATTCCCATAA
246 TCACC--AGTTTT--TGTAAAGTCTAAGTTCGTGC-CTCAAATGGACAA--A-C-A-T-GGAT--
* * * *
53358 ACATAAAAAAAGATAAACATAAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATA
298 TC-T------AG-T--A-AT---GA-TCAT-C--ATT--CA-T-TTTGT-A-ATTAGGCACTATA
* * * * * ** * * ** *
53423 AACATAGTCCTCTCATTAGGATACATGACATTGATGCTTTGGTTTAACAAGAAAGGCTTTTTCCT
339 AACACATTCTTCTCATTAGGATA-ATGATATTGATGATTTTCTTT-GCATGAAAATC-TTTTCTT
* * * * *** *
53488 TACC--AGTTTT--TGT-AAATCCTAAGTTTGTAC-CTCAAATGGGACAAAAATGGATTCT-AGT
401 TGCCTTA-TTTTCCT-TAAAAT-CAAAGTTTAT-CTCTTAAATAAAACAAACATGGATTCTCA-T
* ** * * * *
53546 AA-TGATCAT-CATTCATTTTGTA-ATTAGGCACTATAAACACATT-CTTTTCATTAGGATA-AG
461 AACAG-TC-TCCATTC-TTTTCAAGATT-GGGACCATAAACACATTCCCTTT-AATAGGATACA-
* * ** * * * * * * * ** *
53606 TGATATTG-TTGATTTTCCT-TTGCATGGAAATCTTTTTTTTGTC-CTATTTTTCTTAACATCAT
520 TGACATTGATT--CTTTGGTGTCGCAAGAAAAGCTTTTATTT-CCACCATTTTTGATAA-ATCAA
* * ** * ** * * *
53668 TGTTTATCCCTTAAATAAGAAAAACGCTGATTCTCATAAC-AGTCTCC-
581 AGTTTGTCTTTTAAATAAGACAAACATTAATACTCAT-ACTAATC-CCT
* * * * * **
53715 ATTCTTTTCAGGATTAGGAACTTAAAAGACATTTCCTTAATTAGGATTACAAGACAATT-ATGCT
1 ATTCTTTTCAAGATT-GGGACCTAAAACACATTCCCTTCTTTAGGA-TACAAGAC-ATTAATGCT
* * * * * *
53779 TTGGTCTCGCAAGCAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCACAGTTTATCTCTTAAAT
63 TTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCA-AGTTTTTCTCTTAAAT
* * * * *
53844 AAGACAAACATGAATACTCACACTAATCCCCTTTCTTTTTCAGGATTAGGCATCATAAACATAGT
127 AAGACAAACATGAATACTCATACTAAT-TCCATTCTTTTT-AAGATTAGGCACCATAAACATAGT
* * * *
53909 CTTCTCATTAGGATACACGATATT-AGTGCTTTGGTTTTGCAAGAAAGGTTTTTTTCC-CACCAA
190 CCTCTCATTAGGATACATGATATTGA-TGCTTTGGTTTTGCAAGAAAGG-CTTTTTCCTCACCAG
* * ** * * ** * *
53972 TTTTTGTAAAGT-TTAGCTTCATTACTCAATTGAGACAAACATGGATTCTCGTGTTGATCTTCAG
253 TTTTTGTAAAGTCTAAG-TTCGTGCCTCAAATG-GACAAACATGGATTCTAGTAATGATCATCAT
* * *
54036 TCATTTTTTGATTAGGCACTATAAACACATTCTTCTCATTAGGATAATTGATATTAATGATTTTC
316 TCATTTTGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATAA-TGATATTGATGATTTTC
*
54101 TTTCGCATGAAAATCTTTACTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAA-AAAA
380 TTT-GCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAAA
* ** * * *
54165 CAAGCATCAATTCCCATAACAGTCTCCATTC-TTTCAAGATTTAGGACCCTAAACACATTCCCTT
444 CAAACATGGATTCTCATAACAGTCTCCATTCTTTTCAAGA-TTGGGACCATAAACACATTCCCTT
* * * *
54229 TAATAGGATACATGACATCGATTCTTTGGTGTAGCAAGAAAAGCTTTTATTTCCGCCGTTTTTGA
508 TAATAGGATACATGACATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGA
*
54294 TATAATCAAAGTTTGTCTTTTAAATAA-AGCAAACATTAATACTCATACTAATCTCT
573 TA-AATCAAAGTTTGTCTTTTAAATAAGA-CAAACATTAATACTCATACTAATCCCT
* * * * * *
54350 ATTCTTTTCAATACTGGGATCCGAAAACACATTCCCTTCTTTAGGATACAAAACATTAAAGCTTC
1 ATTCTTTTCAAGATTGGGA-CCTAAAACACATTCCCTTCTTTAGGATACAAGACATTAATGCTTT
* *
54415 GGTGTCATAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCCAAGTTTTTCTCTTAAAAAA
65 GGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT-CAAGTTTTTCTCTTAAATAA
* *
54480 GATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCCCCATAAACATAGTCCT
129 GACAAACATGAATACTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
* *
54545 CTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
193 CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
* *
54610 GTATAGTCTAAGTTCGTGCCTCAAATGGCACAAAAATGGATTCTAGTAATGATCATCATTCATTT
258 GTAAAGTCTAAGTTCGTGCCTCAAATGG-ACAAACATGGATTCTAGTAATGATCATCATTCATTT
* * * *
54675 TGTAATTAGGCACTATAAACACATTCTCCTCATTCGGATAATTGATATTAATGATCTTCTTTTGC
322 TGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATAA-TGATATTGATGATTTTC-TTTGC
* * * *
54740 ATGGAAATCTTTACTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTTTTAAA-AAAACAAGCA
385 ATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAAACAAACA
** * * * *
54804 TTAATTCCCATATCAGTGTCCATTCTTTTCAAGATTTGGGGCCATAAACACATTCCCTTTAATAG
450 TGGATTCTCATAACAGTCTCCATTCTTTTCAAGA-TTGGGACCATAAACACATTCCCTTTAATAG
* * *
54869 GATACATGACATCGATTCTTTGGTGTAGCAAGAAAAGCTTTTATTTCCTCCATTTTTGATATAAT
514 GATACATGACATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATA-AAT
*
54934 CGAAGTTTGTCTTTTAAATAA-AGCAAACATTAATACTCATACTAATCCCT
578 CAAAGTTTGTCTTTTAAATAAGA-CAAACATTAATACTCATACTAATCCCT
* * * * * * *
54984 ATTCTTTTCGAGACTGGGATCTGGAAGCACATTCCCTTCTTTAGGATACAAAACATTAACGCTTT
1 ATTCTTTTCAAGATTGGGACCT-AAAACACATTCCCTTCTTTAGGATACAAGACATTAATGCTTT
** * * *
55049 GGTGTCGTAAGGAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAAAAA
65 GGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATC-AAGTTTTTCTCTTAAATAA
*
55114 GATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
129 GACAAACATGAATACTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
* *
55179 CTCATTAGGATACATGACATTGATGCTTTGGTTTAGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
193 CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
* * *
55244 GTAAAGTCTAAGTTCGTGACTCAAATAGGACAAAAATGGATTTTAGTAATGATCATCATTCATTT
258 GTAAAGTCTAAGTTCGTGCCTCAAAT-GGACAAACATGGATTCTAGTAATGATCATCATTCATTT
* * * *
55309 TGTAATTAGGCGCTATAAACACATTCTTTTTATTAGGATAAGTGATATTGTTGATTTTCCTTTGC
322 TGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATAA-TGATATTGATGATTTT-CTTTGC
* * * * ** ** *
55374 ATGGAAATCTTTTTTTTGCCCTATTTTTCTTAACGTCATTGTTTATCCCTTAAATAAGAA-AAAC
385 ATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAA-AACAAAC
* * * * * * * * *
55438 GTTGATTCTCATAACAGTCTCCATTATTTTCAGGAATGGGAACTTAAAAGACATTTCC-TTAATT
449 ATGGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGACCAT-AAACACATTCCCTTTAA-T
* * *
55502 AGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTAATA
512 AGGA-TACATGAC-ATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATA
* * * * *
55566 GAATCACAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTACTCCCCT
575 -AATCAAAGTTTGTCTTTTAAATAAGACAAACATTAATACTCATACTAAT-CCCT
* * * * * * *
55621 -TTGTTTTTCAGGATTAGGGACC-ATAAACATAGT--CTTCTCATTAGGATACATGATATTAGTG
1 ATT-CTTTTCAAGATT-GGGACCTA-AAACACATTCCCTTCT--TTAGGATACAAGACATTAATG
* * **
55682 CTTTGGTTTCACAAGAAATG-TTTT-TTTCCCACCAATTTTTG-TA-AAGTTTAGCTTTATTACT
61 CTTTGGTGTCACAAGAAAAGCTTTTCTTT-CCACC-ATTTTTGATAGAA-TCAAG-TTT-TT-CT
* * * * * * * * * * *
55743 C--AATTGAGACAAACATGGATTCTCGTATTGATCTTCAGTCATTTTT-TGATTAGGCACTATAA
120 CTTAAATAAGACAAACATGAATACTCATACTAAT-TCCATTC-TTTTTAAGATTAGGCACCATAA
* * * * ** * * *
55805 ACACA-TTCTCCTCATTAGGATA-ATTGATATTAATGATTTTCTTTTGCATGGAAA-TC-TTTAC
183 ACATAGTCCT-CTCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCA-AGAAAGGCTTTTTC
* ** * * ** * *** * ** *
55866 TTTGCCTTA-TTTTCCT-TAAAATCAAAGTTTAT-CGCTTAAAAAAACAAGCATCAATTCCCA-T
245 CTCACC--AGTTTT--TGTAAAGTCTAAGTTCGTGC-CTCAAATGGACAAACATGGATT-CTAGT
* ** * * * *
55927 AA-CAGTC-TCTATTC-TTTTCAAGATTTGGGACCATAAACACATT-TTCTTCTTTAGGATACAT
304 AATGA-TCATC-ATTCATTTTGTA-ATTAGGCACTATAAACACATTCTTC-TCATTAGGATA-AT
* * * ** * * * * * *** *
55988 GACATTGAAGCTTTGGTGTTGTAAGAATAGCATTTT-TTTCCACCTT-TTTTTGATAGAATCAAA
364 GATATTGATGATTTTCT-TTGCATGAAAATC-TTTTCTTT--GCCTTATTTTCCTTAAAATCAAA
* * * * * * * *
56051 GTTTTTCTCTT--ATAAAAGACACATGAATACTCAT-ACTAATCCCCATTCCTTTT-AGGATTAG
425 GTTTATCTCTTAAATAAAACAAACATGGATTCTCATAAC-AGTCTCCATT-CTTTTCAAGATT-G
* * ** * * * *
56112 GCACCATAAACATAGTTTTCTTT-TTAGTATACACGACATTGATGCTTTGGT-TCGCAAG-AAAG
487 GGACCATAAACACA-TTCCCTTTAATAGGATACATGACATTGATTCTTTGGTGTCGCAAGAAAAG
* * * * * * * * * ** ** *
56174 GTTTT-TTCCCACCAAATTTTG-TAAAGTCTAAGTTCGAGC-CTCAAATGAGACAAAGGTGGATT
551 CTTTTATTTCCACC-ATTTTTGATAAA-TCAAAGTTTG-TCTTTTAAATAAGACAAACATTAATA
* * *
56236 CT-AGTAATTAT-CTT
613 CTCA-TACTAATCCCT
*** * ** * * * **
56250 CATTCATTTGGTA-ATTAGG-CACTATAAACACATTCTTTTCATTAGGATA-AGTGATATCGATG
1 -ATTC-TTTTCAAGATTGGGAC-CTA-AAACACATTCCCTTCTTTAGGATACA-AGACATTAATG
* ** * ** * * * * ** ** * * *
56312 ATTTTCTTTTGCATGGAAATCTTGTTTTTTGCC-TTATTTTTCTTAAAATCAAAGTTTATCCCTT
61 CTTTGGTGTCACAAGAAAAGCTT-TTCTTT-CCACCATTTTTGATAGAATC-AAGTTTTTCTCTT
* ** * * * * * * *
56376 AAATAAGACAAGCACCAATTCTCGTAAC-AATCTCCATTCTTTTCAAAATTGGGAACCAAAAACA
123 AAATAAGACAAACATGAATACTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACA
* * * ** * * * *
56440 CATTCC-CTTCATTAGGATGCATGGCATTAATGCTTTGGTATTGCAAGAAAAGC-TTTTCTTTCC
186 TAGTCCTC-TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTC-CT-C
* * * * * * * * * *
56503 ACCATTTTTTATAGAA-TCAAAGTTTGT-CTCTTAAATAAGAAAAACATGAATAGTC-A-TACTA
248 ACCAGTTTTTGTA-AAGTCTAAGTTCGTGC-CTCAAAT-GGACAAACATGGAT--TCTAGTAATG
** * ** * * * * *
56564 ATCCCCTTTC-TTTCATGATTAGGCACTATAAACATAATCTTCTCTTTAGGATACATGACATTG-
308 ATCATCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATA-ATGATATTGA
* ** * * * *** * * * ** *
56627 TTATCTTGGTTTCGCGTGAAGAGCATTTTC-CCACC-AATTTTTC-TAAAGTTTAAGTTTGTGC-
372 TGAT-TTTCTTT-GCATGAAAATC-TTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTAT-CT
* ** * * * * * * ** * * *
56688 CTCAAATAGGACAAAAATGGATTGT-AGTTA-TGATCTTCGTTCATTTTGTA-ATTAGGCACTAC
433 CTTAAATAAAACAAACATGGATTCTCA-TAACAG-TCTCCATTC-TTTTCAAGATT-GGGACCAT
** ** * * ** * * * * *
56750 AGTCTTATTCTCCTCCTT-A-A-GATA-AGTGATATTG-TTGATTTTCTTTTGCATGTAAATCTT
494 AAACACATTC-CCT--TTAATAGGATACA-TGACATTGATT-CTTTGGTGTCGCAAGAAAAGCTT
* ** * * ** ** * ** **
56810 TT-CTTCGC-CCTATTTTTCTTAAAATGAAGGTTCATCCCTTAAATAAGACAAGCATCGATTTTC
554 TTATTTC-CACC-ATTTTTGAT-AAATCAAAGTTTGTCTTTTAAATAAGACAAACATTAATACTC
* *
56873 GAAATACT-GT-GC-
616 ---ATACTAATCCCT
* * * * * *
56885 AATATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
1 ATTCTTTTCAAGATTGGG-ACCTAAAACACATTCCCTTCTTTAGGATACAAGACATTAATGCTTT
* * * *
56950 GGTGTCACAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAGTCAAATTTTGTCTCCTAAATAA
65 GGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAGTTTT-TCTCTTAAATAA
* * * * * * * *
57015 GGCAAATATAAATACTCATACT-ATTCCCCATTCTTTTCAGGATTAGGCACTATAAAAATAGTCT
129 GACAAACATGAATACTCATACTAATT--CCATTCTTTTTAAGATTAGGCACCATAAACATAGTCC
* * * * * * *
57079 TCTTATTTGGATTCACGATATTGGA-GCATTGATTTTGCAAGAAAGGCATTTTTCC-CACCA-CT
192 TCTCATTAGGATACATGATATT-GATGCTTTGGTTTTGCAAGAAAGGC-TTTTTCCTCACCAGTT
* * * * *
57141 TTTGTAAGGT-TAAGTTCGTGCCTCAAATGTGACAAACGTGGATTCTAGTAATGAGCTTCTTTCA
255 TTTGTAAAGTCTAAGTTCGTGCCTCAAATG-GACAAACATGGATTCTAGTAATGATCATCATTCA
* * * * * *
57205 TTTTGTTATTGGGCACTATAAACACATCCCCCTCTC-TAAGG-TAAATGATGTTGATGATTTTCT
319 TTTTGTAATTAGGCACTATAAACACAT--TCTTCTCATTAGGAT-AATGATATTGATGATTTTC-
* * * * * * *
57268 TTTGCATGAAAATC-TTTATTTGCCTGATTTTCCTTAAGATCAAAGTTT-GCCCTTTGAATAAGA
380 TTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTC-TTAAATAAAA
* * * * * * *
57331 CAAGCATCGATTGTTATAAAAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTT
444 CAAACATGGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGG-ACCATAAACACATTCCCTT
* * * * * * * *
57396 CATTAGGATATAAGACATTGATGCTTTGGTGT-GCAAGAAAAGCTTCTCTTTCCACCGTTTTTGA
508 TAATAGGATACATGACATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGA
* * * * * *
57460 TAGAAT-AAA-TGTGTGCCTCTAAGATAAGGCAATCATGAATACTCATACTAATCCCT
573 TA-AATCAAAGTTTGT-CTTTTAA-ATAAGACAAACATTAATACTCATACTAATCCCT
* * * * * *
57516 ATTCTTTTCAAGATTAGGCACC-ATAAACATAGTGT-TC-TCATTAGGATACAAGATATTGATGC
1 ATTCTTTTCAAGATT-GGGACCTA-AAACACA-T-TCCCTTCTTTAGGATACAAGACATTAATGC
* ** * * * * * *
57578 TTTGGTTTTGCAA-ATAAG-GTTT-TTTACAGTCAAATTTTT-ATA-AAGTCTAAGTTCGTGC-C
62 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCA--C-CATTTTTGATAGAA-TC-AAGTT-TTTCTC
* * * * * * * * * *
57637 TCAAATGAA-ACAAACATGGATTCT-AGTAATGATCTTCTTTCATTTTGAGATTAGGCACTATGA
121 TTAAAT-AAGACAAACATGAATACTCA-TACTAAT-TCCATTCTTTTTAAGATTAGGCACCAT-A
* * * * * * *
57700 GTACGTTA-T-C-CTCATTAGGATA-ACTGATATTAATGATTT--TCTTCCACATGGAAA-TC-T
182 -AAC-ATAGTCCTCTCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCA-A--GAAAGGCTT
* *** * * * * * * ** ** * *
57757 TTTCTTTGTC-GTATTTTCCTAAAAT-TAAAGTTCATCCCTGAAATAAGACAGGCACCGATTATC
241 TTTCCTCACCAGT-TTTT-GTAAAGTCT-AAGTTCGTGCCTCAAAT-GGACAAACATGGATTCTA
** * ** * * * * *
57820 GTAACAATC-TCCACTC-TTTTCAAGATTGGGAACCAAAAACACATTC-CCTTCATTAGGATACA
302 GTAATGATCAT-CATTCATTTTGTA-ATTAGGCACTATAAACACATTCTTC-TCATTAGGATA-A
* * * ** * * * * * *
57882 TCACATTGATGCTTTGGTGT-CATAAGAAAAGCTTTTCTTTCCACCGTT-TTTT-ATT-GAATCG
363 TGATATTGATGATTTTCTTTGCAT--GAAAATCTTTTCTTT--GCC-TTATTTTCCTTAAAATCA
* * * ** * * * *
57943 AAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAT-GCTAATCCCCATT-TTTTCAGGATTT
423 AAGTTTATCTCTTAAATAAAACAAACATGGATTCTCATAAC-AGTCTCCATTCTTTTCAAGA-TT
* * * * ** * * * *
58006 GGCACCATAAACATAGT--CTTCTCATTAGGATACGCGATATTGATAT-TTTGGTTTCGTACGAA
486 GGGACCATAAACACATTCCCTT-T-AATAGGATACATGACATTGAT-TCTTTGGTGTCGCAAGAA
* * * * * *
58068 AGGC-ATT-TTTCCTACCAATTTTT-ATAAAGTCTAAGTTCGTGC-GTCAAATAAGACAAAC-TT
548 AAGCTTTTATTTCC-ACC-ATTTTTGATAAA-TCAAAGTTTGT-CTTTTAAATAAGACAAACATT
* * * *
58128 AGATTCT-AGTAATGAT-CTT
609 A-ATACTCA-TACTAATCCCT
* * * * * * * **
58147 CATTCATTTGCTA-ATTAGG-CACTACAATCACATTCTCC-TCATTAGGATA-AGTGATATTGTT
1 -ATTC-TTTTCAAGATTGGGAC-CTA-AAACACATTC-CCTTCTTTAGGATACA-AGACATTAAT
* ** * * * * * * ** * ** *
58208 GATTTTCTTTTACATGGAAATCTTTTCTTTGCC-CTATTTTCCATA-AATGAAAGTTCATCCCTT
60 GCTTTGGTGTCACAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAGAAT-CAAGTTTTTCTCTT
* ** * * * * * *
58271 AAATAGGA-AAAGCATCG-ATTTTCAAAATAGTCTCCATTATTTTCAAGATTAGGAACC-TAAAA
123 AAATAAGACAAA-CAT-GAATACTCATACTAAT-TCCATTCTTTTTAAGATTAGGCACCAT-AAA
* * * * * * * ** * **
58333 CACATTTCAT-TCATTAAGATACATGACATTAATGCTTTGGTATCACAAGAAATGCTTTTCTTTT
184 CATA-GTCCTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTT-TCCT
* * * * * *
58397 CACCA-TTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAT-TCA-TAC
247 CACCAGTTTTTG-TA-AAGTCTAAGTTCGTGC-CTCAAAT-GGACAAACATGGAT-TCT-AGTAA
* * ** * * * * * *
58457 T-ATTC-CCTGTTCTATTCAG-GATTCA-GCACCATAAATATAGTT-TCCTCATTAGGATACACG
306 TGA-TCATC-ATTC-ATTTTGTAATT-AGGCACTATAAACACA-TTCTTCTCATTAGGATA-ATG
** * * ** ** ** * * *
58517 ATATTGGCGCTTTGAT-TTTG-TTGGAAAGGCTTTT-TTCCCACCAATTTT-CGTAAAGTCTAAG
365 ATATTGATGATTT--TCTTTGCAT-GAAAATCTTTTCTTTGC-CTTATTTTCCTTAAAATCAAAG
* * * * * * * * * * ***
58578 TTCATCCCTCAATTGAGACAAACAAGGATTCT-AGTAA-TGATCTTCTTTCATTTT-GTTATTAG
426 TTTATCTCTTAAATAAAACAAACATGGATTCTCA-TAACAG-TCTCCATTC-TTTTCAAGATT-G
* * * * ** ** ** * * * * *
58640 GCACTATAAACACATT-CCTTTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAAT
487 GGACCATAAACACATTCCCTTT-AATAGGATACATGACATTGATTCTTTGGTGTCGCAAGAAAAG
* * ** * * * * * * *
58704 CTTTTCTTTGTC-TGATTTTCT-TTAATATCAAAGTTCGCCGTTTAAATAAGACAAGCATTGATT
551 CTTTTATTT-CCACCATTTT-TGATAA-ATCAAAGTTTGTCTTTTAAATAAGACAAACATTAATA
*
58767 CTCATAAC-GAT-CCT
613 CTCAT-ACTAATCCCT
* * * * *
58781 CATTCTTTGCAAGATTGGGAACCAAAAACACATTCCCTT-TATTAGGATACAAGTCTTTGATGCT
1 -ATTCTTTTCAAGATTGGG-ACCTAAAACACATTCCCTTCT-TTAGGATACAAGACATTAATGCT
* * * *
58845 TTGGTGT-AGGAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGTCACTTAAA
63 TTGGTGTCA-CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA-GTTTTTCTCTTAAA
* * * ***
58909 TAAGGCAAACATGAATACTCATTCTAATCCCCATTCTTTGCGAGATTAGGCACCAT-AACATAGT
126 TAAGACAAACATGAATACTCATACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATAGT
** * * *
58973 GTTCTCATTAGGATACATGATATTGATGCTTT-GTTCT-CATTG---GG-------GT-A-CA--
190 CCTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCA-AGAAAGGCTTTTTCCTCACCAGT
* * * *
59022 ---TGTAAAGTCTAAGTTCGTGCCTTAAATCGACAAACATGGACTCTAGTAATGATCTTCATTCA
254 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGGACAAACATGGATTCTAGTAATGATCATCATTCA
* * * * * * *
59084 TTTT-AAGATTAGACACTATAAACACATTCTCCACTTTAGGATAATGATTTTGATGATTTCACTT
319 TTTTGTA-ATTAGGCACTATAAACACATTCTTCTCATTAGGATAATGATATTGATGATTT-TCTT
* * * **
59148 TGCA-CAGAAATATTTTCTTTGCCCTATTTTCC-TAAAATCAAAGTACATAC-CTTAAATAAAA-
382 TGCATGA-AAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTAT-CTCTTAAATAAAAC
* * *
59209 AAAGCATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTGGGAACC-TAAAACACATTCCCT
445 AAA-CATGGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGG-ACCAT-AAACACATTCCCT
* * * * * * *
59273 TTAATAGGATACATGAAATCGATCCTGTGGTGTAGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
507 TTAATAGGATACATGACATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTG
59338 ATATAATCAAAGTTTGTCTTTTAAATAA-AGCAAACATTAATACTCATACTAATCCCT
572 ATA-AATCAAAGTTTGTCTTTTAAATAAGA-CAAACATTAATACTCATACTAATCCCT
* * * * *
59395 ATTCTTTTCAAGACTAGGATCCGAAAACACATTCCCTTCTTTAGGATACAAAACATTAAAGCTTT
1 ATTCTTTTCAAGATTGGGA-CCTAAAACACATTCCCTTCTTTAGGATACAAGACATTAATGCTTT
** * * *
59460 GGTGTCGTAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAAAAA
65 GGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATC-AAGTTTTTCTCTTAAATAA
*
59525 GATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
129 GACAAACATGAATACTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
* *
59590 CTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
193 CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
* *
59655 GTAAAGTCTAAGTTCGTGCCTAAAATGGGACAAAAATGGATTCTAGTAATGATCATCATTCATTT
258 GTAAAGTCTAAGTTCGTGCCTCAAAT-GGACAAACATGGATTCTAGTAATGATCATCATTCATTT
* *
59720 TGTAATTAGGCACTATAAACACATTCTTTTCATTAGGATAAGTGATATTGTTGATTTTCCTTTGC
322 TGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATAA-TGATATTGATGATTTT-CTTTGC
* * * * * ** *
59785 ATGGAAATCTTTTTTTTGCCCTATTTTTCTTAACATCATTGTTTATCCCTTAAATAAGAA-AAAC
385 ATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAA-AACAAAC
* * * * * * * *
59849 GTTGATTCTCATAACAGTCTCCATTATTTTCATGATTGGGAACTTAAAAGACATTTCC-TTAATT
449 ATGGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGACCAT-AAACACATTCCCTTTAA-T
* * * * *
59913 AGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTAATA
512 AGGA-TACATGAC-ATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATA
* * * *
59977 GAATCATAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCT
575 -AATCAAAGTTTGTCTTTTAAATAAGACAAACATTAATACTCATACTAATCCCT
* * * * * ** * *
60031 TTTTTTTTCAAGATTAGGCACC-ATAAACATAGT--CTTCTCATTAGGATACACTATATTAGTGC
1 ATTCTTTTCAAGATT-GGGACCTA-AAACACATTCCCTTCT--TTAGGATACAAGACATTAATGC
* ** * ** *
60093 TTTGGTTTTGCAAG-AAAGGTTTT-TTTCCCACCAATTTTTG-TA-AAGTTTAGCTTCATTC-CT
62 TTTGGTGTCACAAGAAAAGCTTTTCTTT-CCACC-ATTTTTGATAGAA-TCAAG-TT-TTTCTCT
* * * * * * * * * * * *
60153 CAATTGAGACAAACATGGATTCTCGTATTGATCTTCAATCATTTTT-TGATTAGGCACTATAAAC
122 TAAATAAGACAAACATGAATACTCATACTAAT-TCCATTC-TTTTTAAGATTAGGCACCATAAAC
* * * * ** * * * *
60217 A-CGTTCTCCTCATTAGGATA-ATTGATATTAATGATTTTCTTTTGCATGGAAA-TC-TTTACTT
185 ATAGTCCT-CTCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCA-AGAAAGGCTTTTTCCT
** * * ** * *** **
60278 TGCCTTA-TTTTCCT-TAAAATCAAAGTTTAT-CTCTTAAAAAAACAAGCATCAATTCCCATAAA
247 CACC--AGTTTT--TGTAAAGTCTAAGTTCGTGC-CTCAAATGGACAA--A-C-A-T-GGAT---
* * * *
60340 TATAAAAAAAGATAAACATAAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAA
298 TCT------AG-T--A-AT---GA-TCAT-C--ATT--CA-T-TTTGT-A-ATTAGGCACTATAA
* * * * * ** * * ** * *
60405 ACATACTCCTCTCATTAGGATACATGACATTGATGCTTTGGTTTAACAAGAAAGGCTTTTTCCTC
340 ACACATTCTTCTCATTAGGATA-ATGATATTGATGATTTTCTTT-GCATGAAAATC-TTTTCTTT
* * * * *** *
60470 ACC--AGTTTT--TGT-AAATCCTAAGTTTGTAC-CTCAAATGGGACAAAAATGGATTCT-AGTA
402 GCCTTA-TTTTCCT-TAAAAT-CAAAGTTTAT-CTCTTAAATAAAACAAACATGGATTCTCA-TA
* ** * * * *
60528 A-TGATCAT-CATTCATTTTGTA-ATTAGGCACTATAAACACATT-CTTTTCATTAGGATA-AGT
462 ACAG-TC-TCCATTC-TTTTCAAGATT-GGGACCATAAACACATTCCCTTT-AATAGGATACA-T
* * ** * * * * * *** ** **
60588 GATATTG-TTGATTTTCCT-TTGCATGGAAATCTTTTTTTTTGTCCAATTTTTCTTAACATCATT
521 GACATTGATT--CTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACC-ATTTTTGATAA-ATCAAA
* * * * *
60651 GTTTATCCCTTTAAATAAGA-AAAGCATTGATTCTCATAAC-AGTCTCC-
582 GTTTGT-CTTTTAAATAAGACAAA-CATTAATACTCAT-ACTAATC-CCT
* * * * * * **
60698 ACTCTTTTCAGGAATGGGAACTTAAAAGACATTTCCTTAATTAGGATTACAAGACAATT-ATGCT
1 ATTCTTTTCAAGATTGGG-ACCTAAAACACATTCCCTTCTTTAGGA-TACAAGAC-ATTAATGCT
* * * * *
60762 TTGGTGTCGCAAGCAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCACAGTTTATCTCTTAAAT
63 TTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCA-AGTTTTTCTCTTAAAT
* * * * *
60827 AAGACAAACATGAATACTCACACTAATCCCCTTTCTTTTTCAGGATTAGGCATCATAAACATAGT
127 AAGACAAACATGAATACTCATACTAAT-TCCATTCTTTTT-AAGATTAGGCACCATAAACATAGT
* * * *
60892 CTTCTCATTAGGATACACGATATT-AGTGCTTTGGTTTTGCAAGAAAGGTTTTTTTCC-CACCAA
190 CCTCTCATTAGGATACATGATATTGA-TGCTTTGGTTTTGCAAGAAAGG-CTTTTTCCTCACCAG
* * ** * *
60955 TTTTTGTAAAGT-TTAGCTTCATTACTCAATTGAGACAAACATGGATTCTCATGT--TGATCTTC
253 TTTTTGTAAAGTCTAAG-TTCGTGCCTCAAATG-GACAAACATGGATTCT-A-GTAATGATCATC
* * * *
61017 AGTCATTTTTTGATTAGGCACTATAAACACATTCTTCTCATTAGGATAATTGATATTAATGATTT
314 ATTCATTTTGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATAA-TGATATTGATGATTT
*
61082 TCTTTCGCATGAAAATCTTTACTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAA-AA
378 TCTTT-GCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAA
* ** * *
61146 AACAAGCATCAATTCCCATAACAGTCTCCATTCTTTTCAAGATTTGGGACCCTAAACACATTCCC
442 AACAAACATGGATTCTCATAACAGTCTCCATTCTTTTCAAGA-TTGGGACCATAAACACATTCCC
* * * *
61211 TTTAATAGGATACATGACATCGATTCTTTGGTGTAGCAAGAAAAGCTTTTATTTCCGCCGTTTTT
506 TTTAATAGGATACATGACATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTT
61276 GATATAATCAAAGTTTGTCTTTTAAATAA-AGCAAACATTAATACTCATACTAATCCCT
571 GATA-AATCAAAGTTTGTCTTTTAAATAAGA-CAAACATTAATACTCATACTAATCCCT
* * * *
61334 ATTCTTTTCAAGACTGGGATCCGAAAACACATTCCCTTCTTTAGGATACAAAACATTAAAGCTTT
1 ATTCTTTTCAAGATTGGGA-CCTAAAACACATTCCCTTCTTTAGGATACAAGACATTAATGCTTT
* * *
61399 GGTGTCATAAGAAAAGCCTTTCTTTCCACCATTTTTGATAGAATCCAAGTTTTTCTCTTAAAAAA
65 GGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT-CAAGTTTTTCTCTTAAATAA
*
61464 GATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
129 GACAAACATGAATACTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
* *
61529 CTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
193 CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
*
61594 GTAAAGTCTAAGTTCGTGCCTCAAATGGGACAAAAATGGATTCTAGTAATGATCATCATTCATTT
258 GTAAAGTCTAAGTTCGTGCCTCAAAT-GGACAAACATGGATTCTAGTAATGATCATCATTCATTT
* * *
61659 TGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAATTGATATTAATGATCTTCTTTTGC
322 TGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATAA-TGATATTGATGATTTTC-TTTGC
* * * *
61724 ATGGAAATCTTTACTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTTTTAAA-AAAACAAGCA
385 ATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAAACAAACA
** * *
61788 TTAATTCCCATAACAGTGTCCATTCTTTTCAAGATTTGGGACCATAAACACATTCCCTTTAATAG
450 TGGATTCTCATAACAGTCTCCATTCTTTTCAAGA-TTGGGACCATAAACACATTCCCTTTAATAG
* * *
61853 GATACATGACATCGATTCTTTGGTGTAGCAAGAAAAGCTTTTATTTCCACCGTTTTTGATATAAT
514 GATACATGACATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATA-AAT
*
61918 CGAAGTTTGTCTTTTAAATAA-AGCAAACATTAATACTCATACTAATCCCT
578 CAAAGTTTGTCTTTTAAATAAGA-CAAACATTAATACTCATACTAATCCCT
* * * * * *
61968 ATTCTTTTCGAGACTGGGATCTAGAAGCACATTCCCTTCTTTAGGATACAAAACATTAACGCTTT
1 ATTCTTTTCAAGATTGGGACCTA-AAACACATTCCCTTCTTTAGGATACAAGACATTAATGCTTT
* * * *
62033 GGTGTCATAAGGAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTTTCTCTTAAAAAA
65 GGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA-GTTTTTCTCTTAAATAA
*
62098 GATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
129 GACAAACATGAATACTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCT
* *
62163 CTCATTAGGATACATGACATTGATGCTTTGGTTTAGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
193 CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCTCACCAGTTTTT
* * * *
62228 GTAAAGTCTAAGTTTGTGCCTTAAATAGGACAAAAATGGATTTTAGTAATGATCATCATTCATTT
258 GTAAAGTCTAAGTTCGTGCCTCAAAT-GGACAAACATGGATTCTAGTAATGATCATCATTCATTT
* * * *
62293 TGTAATTAGGCGCTATAAACACATTCTTTTTATTAGGATAAGTGATATTGTTGATTTTCCTTTGC
322 TGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATAA-TGATATTGATGATTTT-CTTTGC
* * * * ** ** *
62358 ATGGAAATCTTTTTTTTGCCCTATTTTTCTTAATGTCATTGTTTATCCCTTAAATAAGAA-AAAC
385 ATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAA-AACAAAC
* * * * * * * * *
62422 GTTGATTCTCATAACAGTCTCCATTATTTTCAGGATTGGAAACTTAAAAGACATTTCC-TTAATT
449 ATGGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGACCAT-AAACACATTCCCTTTAA-T
* * * *
62486 AGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGAAATGCTTTTATTTCCACCATTTTTAATA
512 AGGA-TACATGAC-ATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATA
* * * *
62550 GAATCACAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
575 -AATCAAAGTTTGTCTTTTAAATAAGACAAACATTAATACTCATACTAATCCC
62603 CTTTGTTTTT
Statistics
Matches: 12936, Mismatches: 3089, Indels: 2290
0.71 0.17 0.13
Matches are distributed among these distances:
612 34 0.00
613 639 0.05
614 200 0.02
615 48 0.00
616 10 0.00
618 4 0.00
620 4 0.00
621 2 0.00
622 2 0.00
625 2 0.00
626 2 0.00
627 4 0.00
628 44 0.00
629 76 0.01
630 366 0.03
631 793 0.06
632 1165 0.09
633 1215 0.09
634 3469 0.27
635 1472 0.11
636 1418 0.11
637 342 0.03
638 173 0.01
639 31 0.00
640 18 0.00
641 5 0.00
642 7 0.00
643 2 0.00
644 7 0.00
645 6 0.00
646 3 0.00
647 3 0.00
648 1 0.00
649 4 0.00
650 5 0.00
651 3 0.00
652 3 0.00
653 6 0.00
654 4 0.00
656 3 0.00
657 7 0.00
658 9 0.00
659 4 0.00
660 5 0.00
661 8 0.00
662 6 0.00
663 7 0.00
664 30 0.00
665 255 0.02
666 328 0.03
667 336 0.03
668 183 0.01
669 84 0.01
670 69 0.01
671 6 0.00
672 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (627 bp):
ATTCTTTTCAAGATTGGGACCTAAAACACATTCCCTTCTTTAGGATACAAGACATTAATGCTTTG
GTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAGTTTTTCTCTTAAATAAGA
CAAACATGAATACTCATACTAATTCCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCTCTC
ATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCTCACCAGTTTTTGTA
AAGTCTAAGTTCGTGCCTCAAATGGACAAACATGGATTCTAGTAATGATCATCATTCATTTTGTA
ATTAGGCACTATAAACACATTCTTCTCATTAGGATAATGATATTGATGATTTTCTTTGCATGAAA
ATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAAACAAACATGGATT
CTCATAACAGTCTCCATTCTTTTCAAGATTGGGACCATAAACACATTCCCTTTAATAGGATACAT
GACATTGATTCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATAAATCAAAGTTT
GTCTTTTAAATAAGACAAACATTAATACTCATACTAATCCCT
Found at i:48759 original size:474 final size:469
Alignment explanation
Indices: 46094--50487 Score: 4161
Period size: 474 Copynumber: 9.3 Consensus size: 469
46084 GATCTGGAAG
* ** * * * *
46094 CACATTCCCTTCTTTAGGATACAAAACATTAACGCTTTGGTGTCGTAAGGAAAGCTTTTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * *
46159 ACCATTTTTGATAGAATCAAAGTTTTTCTCTTAAAAAAGATAAACATGAATACTCATACTAATTG
66 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAA-TC
* * * * *
46224 CC-ATTCTTTTTAAGATTAGGCACCATAAACATAGTCCTCTCATTAGGATACATGACATTGATGC
130 CCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGC
* * * * *
46288 TTTGGTTTAGCAAGAAAGGCTTTTTCCTCACCAGTTTTTGTAAAGTCTAAGTTCGTGACTCAAAT
195 TTTGGTTTCGCAA-AAAGGTTTTTTCATCA--AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * *
46353 -AGGACAAAAATGGATTTTAGTAATGATCATCATTCATTTTGTAATTAGGCGCTATAAACACATT
257 GA-GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATT
* * * * *
46417 CT-TTTTATTAGGATAAGTGATATTGTTGATTTTCCTTTGCATGGAAATCTTTTTTTTGCCCTAT
321 CTCCTCT-TTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATC-TTTCTTTG-CCTAT
* ** ** * * * * *
46481 TTTTCTTAACGTCATTGTTTATCCCTTAAATAAGAAAAACGTTGATTCTCATAACAGTCTCCATT
383 TTTCCTTAAAATCAAAG-TT-TCCCTTAAATAAGACAAGCATCGATTCTCATAAAAGTCTCCATT
* * * **
46546 ATTTTCAGGAATGGGAACTTAAAA
446 CTTTTCAAGATTGGGAACCAAAAA
* * * * *
46570 GACATTTCCTTAATTAGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGAAAAGCTTTTATTT
1 CACATTCCCTTCATTAGGA-TACATGAC-ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * *
46634 CCACCATTTTTAATAGAATCACAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTACT
64 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT
* *
46699 CCCCT-TTGTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT-A
129 -CCCTATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGA
* * * * * ** **
46762 GTGCTTTTGTTTCACAAGAAATGTTTTTTTCCCA-CCAATTTTTGTAAAGT-TTAGCTTTATTAC
192 -TGCTTTGGTTTCGCAA-AAA-GGTTTTTT--CATCAAATTTTTGTAAAGTCTAAG-TTCGTGCC
* * * * * *
46825 TCAATTGAGACAAACATGGATTCTCGTATTGATCTTCAGTCATTTTTTGATTAGGCACTATAAAC
251 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAAC
* * *
46890 ACATTCTCCTCATTAGGATAATTGATATTAATGATTTTCTTTTGCATGGAAATCTTTACTTTGCC
316 ACATTCTCCTCTTTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTT-CTTTGCC
* * * * *
46955 TTATTTTCCTTAAAATCAAAGTTTATCGCTTAAA-AAAACAAGCATCAATTCCCATAACAGTCTC
380 -TATTTTCCTTAAAATCAAAG-TT-TCCCTTAAATAAGACAAGCATCGATTCTCATAAAAGTCTC
* *
47019 TATTCTTTTCAAGATTTGGG-ACCATAAA
442 CATTCTTTTCAAGA-TTGGGAACCAAAAA
** * * * * *
47047 CACATTTTCTTCTTTAGGATACATGACATTGAAGCTTTGGTGTTGTAAGAATAGCATTTT-TTTC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTCTTTC
* *
47111 CACCTTTTTTTGATAGAATCAAAGTTTTTCTCTTATAA-AAGAC--ACATGAATACTCATACTAA
65 CACC-ATTTTTGATAGAATCAAAGTTTGTCTCTTA-AATAAGACAAACATGAATACTCATACTAA
* * ** * *
47173 TCCCCATTCCTTTT-AGGATTAGGCACCATAAACATAGTTTTCTTTTTAGTATACACGACATTGA
128 TCCCTATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGA
* *
47237 TGCTTTGG-TTCGCAAGAAAGGTTTTTTCCCACCAAA-TTTTGTAAAGTCTAAGTTCGAGCCTCA
192 TGCTTTGGTTTCGCAA-AAAGGTTTTTT--CATCAAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
** * *
47300 AATGAGACAAAGGTGGATTCTAGTAATTATCTTCATTCATTTGGTAATTAGGCACTATAAACACA
254 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACA
** * * *
47365 TTCTTTTCATTAGGATAAGTGATATCGATGATTTTCTTTTGCATGGAAATCTTGTTTTTGCCTTA
319 TTCTCCTCTTTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTT-TCTTTGCC-TA
* * * **
47430 TTTTTCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCACCAATTCTTGTAACAA-TCTCCA
382 TTTTCCTTAAAATCAAAG-TT-TCCCTTAAATAAGACAAGCATCGATTCTCATAA-AAGTCTCCA
*
47494 TTCTTTTCAAAATTGGGAACCAAAAA
444 TTCTTTTCAAGATTGGGAACCAAAAA
* * * * *
47520 CACATTCCCTTCATTAGGATGCATGGCATTAATGCTTTGGTATTGCAAGAAAAGCTTTTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* *
47585 ACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
66 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT-C
* * * * * *
47650 CCT-TTCTTTTCATGATTAGGCACTATAAACATAATCTTCTCTTTAGGATACATGACATTGTTAT
130 CCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTG--AT
* * * ** * * * *
47714 -C-TTGGTTTCGCGTGAAGAGCATTTTCCCA-CCAATTTTTCTAAAGTTTAAGTTTGTGCCTCAA
193 GCTTTGGTTTCGC--AAAAAG-GTTTTTTCATCAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * * * * ** **
47776 AT-AGGACAAAAATGGATTGTAGTTATGATCTTCGTTCATTTTGTAATTAGGCACTACAGTCTTA
255 ATGA-GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACA
* * * * *
47840 TTCTCCTCCTTAAGATAAGTGATATTGTTGATTTTCTTTTGCATGTAAATCTTTTCTTCGCCCTA
319 TTCTCCTCTTTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATC-TTTCTTTG-CCTA
* * * * * * * *
47905 TTTTTCTTAAAATGAAGGTTCATCCCTTAAATAAGACAAGCATCGATTTTCGA-AATACTGTGCA
382 TTTTCCTTAAAATCAAAGTT--TCCCTTAAATAAGACAAGCATCGATTCTC-ATAAAAGTCTCCA
* * * *
47969 ATATTTTCAGGATTGGGAACCTAAAA
444 TTCTTTTCAAGATTGGGAACCAAAAA
* * *
47995 TACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTTC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * *
48060 ACCATTTTTGATAGAGTCAAAGTTTGTCTCCTAAATAAGGCAAATATAAATACTCATACTATTCC
66 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * * * *
48125 CCATTCTTTTCAGGATTAGGCACTATAAAAATAGTCTTCTTATTTGGATTCACGATATTGGA-GC
131 CTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATT-GATGC
* * * * * * * *
48189 ATTGATTTTGCAAGAAAGGCATTTTTC-CCACCACTTTTGTAAGGT-TAAGTTCGTGCCTCAAAT
195 TTTGGTTTCGCAA-AAAGG-TTTTTTCATCA-AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * * * *
48252 GTGACAAACGTGGATTCTAGTAATGAGCTTCTTTCATTTTGTTATTGGGCACTATAAACACATCC
257 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTC
* * * * * *
48317 CCCTCTCTAAGG-TAAATGATGTTGATGATTTTCTTTTGCATGAAAATCTTTATTTGCCTGATTT
322 TCCTCT-TTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTCTTTGCCT-ATTT
* * * * *
48381 TCCTTAAGATCAAAGTTTGCCCTTTGAATAAGACAAGCATCGATTGTTATAAAAGTCCCCATTCT
385 TCCTTAAAATCAAAGTTT-CCC-TTAAATAAGACAAGCATCGATTCTCATAAAAGTCTCCATTCT
48446 TTTCAAGATTGGGAACCAAAAA
448 TTTCAAGATTGGGAACCAAAAA
* * *
48468 CACATTCCCTTCATTAGGATATAAGACATTGATGCTTTGGTGT-GCAAGAAAAGCTTCTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * *
48532 ACCGTTTTTGATAGAATCAATGTGTGCCTC-TAAGATAAGGCAATCATGAATACTCATACTAATC
66 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA-ATAAGACAAACATGAATACTCATACTAATC
* * *
48596 CCTATTCTTTTCAAGATTAGGCACCATAAACATAGTGTTCTCATTAGGATACAAGATATTGATGC
130 CCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGC
* *
48661 TTTGGTTTTGCAAATAAGGTTTTTTACAGTCAAATTTTTATAAAGTCTAAGTTCGTGCCTCAAAT
195 TTTGGTTTCGCAAA-AAGGTTTTTT-CA-TCAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * ** *
48726 GAAACCAACATGGATTCTAGTAATGATCTTCTTTCATTTTG-AGATTAGGCACTATGAGTACGTT
257 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTA-ATTAGGCACTATAAACACATT
* * * * *** *
48790 ATCCTCATTAGGATAACTGATATTAATGATTTTCTTCCACATGGAAATCTTTTCTTTGTCGTATT
321 CTCCTCTTTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATC-TTTCTTTG-CCTATT
* * * * * *
48855 TTCC-TAAAATCAAAGTTCATCCCTGAAATAAGACAGGCACCGATTATCGTAACAA-TCTCCACT
384 TTCCTTAAAATCAAAGTT--TCCCTTAAATAAGACAAGCATCGATTCTCATAA-AAGTCTCCATT
48918 CTTTTCAAGATTGGGAACCAAAAA
446 CTTTTCAAGATTGGGAACCAAAAA
* **
48942 CACATTCCCTTCATTAGGATACATCACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * * *
49007 ACCGTTTTTTATTGAATCGAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATGCTAATCC
66 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * **
49072 CTATT-TTTTCAGGATTTGGCACCATAAACATAGTCTTCTTATTAGGATACGCGATATTGATATT
131 CTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCT
* * * * * * *
49136 TTGGTTTCGTACGAAAGGCATTTTTCCTACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATA
196 TTGGTTTCGCA-AAAAGG-TTTTTTCAT-CAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * *
49201 AGACAAACTTAGATTCTAGTAATGATCTTCATTCA-TTTGCTAATTAGGCACTATAATCACATTC
258 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG-TAATTAGGCACTATAAACACATTC
* * * *
49265 TCCTCATTAGGATAAGTGATATTGTTGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCCATTT
322 TCCTCTTTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATC-TTTCTTTG-CCTATTT
* * * * * *
49330 TCCAT-AAATGAAAGTTCATCCCTTAAATAGGAAAAGCATCGATTTTCA-AAATAGTCTCCATTA
385 TCCTTAAAATCAAAGTT--TCCCTTAAATAAGACAAGCATCGATTCTCATAAA-AGTCTCCATTC
* *
49393 TTTTCAAGATTAGGAACCTAAAA
447 TTTTCAAGATTGGGAACCAAAAA
* * * * * * * *
49416 CACATTTCATTCATTAAGATACATGACATTAATGCTTTGGTATCACAAGAAATGCTTTTCTTTTC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* *
49481 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATATTCATACTATTCC
66 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * **
49546 CTGTTCTATTCAGGATTCA-GCACCATAAATATAGT-TTCCTCATTAGGATACACGATATTGGCG
131 CTATTCTTTTCAGGATT-AGGCACCATAAACATAGTCTT-CTCATTAGGATACACGATATTGATG
* * *** * * * *
49609 CTTTGATTTTGTTGGAAAGGCTTTTTTCCCA-CCAATTTTCGTAAAGTCTAAGTTCATCCCTCAA
194 CTTTGGTTTCG-CAAAAAGG-TTTTTT--CATCAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * * *
49673 TTGAGACAAACAAGGATTCTAGTAATGATCTTCTTTCATTTTGTTATTAGGCACTATAAACACAT
255 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACAT
* * * *
49738 TC-CCTTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGTCTGA
320 TCTCC-TCTTTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATC-TTTCTTTGCCT-A
* * * *
49802 TTTTCTTTAATATCAAAG-TTCGCCGTTTAAATAAGACAAGCATTGATTCTCAT-AACGATC-CT
382 TTTTCCTTAAAATCAAAGTTTC-CC--TTAAATAAGACAAGCATCGATTCTCATAAAAG-TCTC-
*
49864 CATTCTTTGCAAGATTGGGAACCAAAAA
442 CATTCTTTTCAAGATTGGGAACCAAAAA
* * * * * *
49892 CACATTCCCTTTATTAGGATACAAGTCTTTGATGCTTTGGTGTAGGAAGAAAAGCTTTTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * *
49957 ACCGTTTTTGATAGAATCAATGTTTGCCACTTAAATAAGGCAAACATGAATACTCATTCTAATCC
66 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * * *
50022 CCATTCTTTGC-GAGATTAGGCACCAT-AACACAGTGTTCTCATTAGGATACATGATATTGATGC
131 CTATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGC
* ** ** * *
50085 TTT-G-TTCTC--ATTGG---GGT-A-C--A----TGTAAAGTCTAAGTTCGTGCCTTAAAT-CG
195 TTTGGTTTCGCAAAAAGGTTTTTTCATCAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
* * *
50134 ACAAACATGGACTCTAGTAATGATCTTCATTCATTTT-AAGATTAGACACTATAAACACATTCTC
260 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTA-ATTAGGCACTATAAACACATTCTC
* * * * ** *
50198 CACTTTAGGATAA-TGATTTTAATGA-TTTCACTTTGCACAGAAATATTTTCTTTGCCCTATTTT
324 CTCTTTAGGATAAGTGATATTGATGATTTTC-TTTTGCATGGAAAT-CTTTCTTTG-CCTATTTT
* * * * * **
50261 CC-TAAAATCAAAGTACATACCTTAAATAAAAAAAGCATCGATTCTCGTAACTGTCTCCATTCTT
386 CCTTAAAATCAAAGT--TTCCCTTAAATAAGACAAGCATCGATTCTCATAAAAGTCTCCATTCTT
*
50325 TTCAAGATTGGGAACCTAAAA
449 TTCAAGATTGGGAACCAAAAA
* * * * * * *
50346 CACATTCCCTTTAATAGGATACATGAAATCGATCCTGTGGTGTAGCAAGAAAAGCTTTTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * *
50411 ACCGTTTTTGATATAATCAAAGTTTGTCTTTTAAATAA-AGCAAACATTAATACTCATACTAATC
66 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA-CAAACATGAATACTCATACTAATC
50475 CCTATTCTTTTCA
130 CCTATTCTTTTCA
50488 AGACTAGGAT
Statistics
Matches: 3241, Mismatches: 562, Indels: 251
0.80 0.14 0.06
Matches are distributed among these distances:
454 186 0.06
455 38 0.01
456 70 0.02
457 25 0.01
461 1 0.00
463 2 0.00
466 1 0.00
470 3 0.00
471 14 0.00
472 356 0.11
473 256 0.08
474 843 0.26
475 756 0.23
476 257 0.08
477 201 0.06
478 222 0.07
479 8 0.00
480 1 0.00
481 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (469 bp):
CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
CTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCT
TTGGTTTCGCAAAAAGGTTTTTTCATCAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA
CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCT
CTTTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTCTTTGCCTATTTTCCTTA
AAATCAAAGTTTCCCTTAAATAAGACAAGCATCGATTCTCATAAAAGTCTCCATTCTTTTCAAGA
TTGGGAACCAAAAA
Found at i:50738 original size:159 final size:159
Alignment explanation
Indices: 50319--50722 Score: 449
Period size: 159 Copynumber: 2.5 Consensus size: 159
50309 AACTGTCTCC
* * * * * * * * * * *
50319 ATTCTTTTCAAGATTGGGAACCTAAAACACATTCCCTTTAATAGGATACATGAAATCGATCCTGT
1 ATTCTTTTCAAGACTAGGATCCGAAAACACAGTCCCTTCATTAGGATACATGACATTGATGCTTT
* * *
50384 GGTGTAGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATATAATCAAAGTTTGTCTTTTAAATAA
66 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
*
50449 AGCAAACATTAATACTCATACTAATCCCT
131 AGCAAACATGAATACTCATACTAATCCCT
* * ** * *
50478 ATTCTTTTCAAGACTAGGATCCGAAAACACATTCCCTTCTTTAGGATACAAAACATTAAAGCTTT
1 ATTCTTTTCAAGACTAGGATCCGAAAACACAGTCCCTTCATTAGGATACATGACATTGATGCTTT
* * *
50543 GGTGTCGTAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAA-AA
66 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* *
50607 AGATAAACATGAATACTCATACTAATTGCC-
131 AG-CAAACATGAATACTCATACTAA-TCCCT
* * *
50637 ATTCTTTTTAAGATTAGGCA-CC-ATAAACATAGT-CCTCTCATTAGGATACATGACATTGATGC
1 ATTCTTTTCAAGACTAGG-ATCCGA-AAACACAGTCCCT-TCATTAGGATACATGACATTGATGC
* *
50699 TTTGGTTTCGCAAGAAAGGCTTTT
63 TTTGGTGTCGCAAGAAAAGCTTTT
50723 TCCTCACCAG
Statistics
Matches: 203, Mismatches: 37, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
158 8 0.04
159 191 0.94
160 4 0.02
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (159 bp):
ATTCTTTTCAAGACTAGGATCCGAAAACACAGTCCCTTCATTAGGATACATGACATTGATGCTTT
GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
AGCAAACATGAATACTCATACTAATCCCT
Found at i:52651 original size:159 final size:155
Alignment explanation
Indices: 51431--63610 Score: 1809
Period size: 159 Copynumber: 76.6 Consensus size: 155
51421 AACATAAAAA
* * * *
51431 AAGATAAACATAAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACATAGTC
1 AAGACAAACATGAATTCTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATATTC
** * *
51496 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTAACAAGAAAGGC-TTTTTCCTCACCAGTT
65 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTC-CACCA-TT
* *
51560 TTTG-TAAATCCTAAGTTTGTAC-CTCAAAT
128 TTTGATAAAT-C-AAGTTTAT-CTCTTAAAT
** * * * * * *
51589 GGGACAAAAATGGATTCT-AGTAATGA-TCATCATTCATTTTGT-A-ATTAGGCACTATAAACAC
1 AAGACAAACATGAATTCTCA-TACTAATTC--CATTC-TTTT-TAAGATTAGGCACCATAAACAT
* * * * * *** * * * ***
51650 ATTCTTTTCATTAGGATA-AGTGATATTGTTGATTTTCCTTTGCATGGAAATCTTTTTTTTGTCC
61 ATTCCTCTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCCACC
** * *
51714 TATTTTTCTTAACATCATTGTTTATCCCTTAAAT
125 -ATTTTTGATAA-ATCA-AGTTTATCTCTTAAAT
* * * * * * *
51748 AAGA-AAAGCGCTG-ATTCTCATAAC-AGTCTCCATTCTTTTCAGGATTAGGAACTTAAAAGACA
1 AAGACAAA-C-ATGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCAC-CATAA-ACA
* * * * *
51810 T-TTCCT-TAATTAGGATTACAAGACAATT-ATGCTTTGGTCTCGCAAGCAAAGCTTTTCTTTCC
60 TATTCCTCTCATTAGGA-TACATGAC-ATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCC
* *
51872 ACCGTTTTTAATAGAATCACAGTTTATCTCTTAAAT
122 ACCATTTTTGATA-AATCA-AGTTTATCTCTTAAAT
* * * * * * *
51908 AAGACAAACATGAATACTCACACTAATCCCCTTTCTTTTTCAGGATTAGGCATCATAAACATAGT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTCTTTTT-AAGATTAGGCACCATAAACATATT
* * * *
51973 CTTCTCATTAGGATACACGATATT-AGTGCTTTGGTTTTGCAAG-AAAGGTTTTTTTCCCACCAA
64 CCTCTCATTAGGATACATGACATTGA-TGCTTTGGTTTTGCAAGAAAAGCTTTTTTT-CCACC-A
** * * *
52036 TTTTTG-TAAAGTTTAGCTTCAT-TACTCAATT
126 TTTTTGATAAA-TCAAG-TTTATCT-CTTAAAT
* * * ** * * * * * *
52067 GAGACAAACATGGATTCTCGTGTTGATCTTCAGTCATTTTT-TGATTAGGCACTATAAACACATT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTC-TTTTTAAGATTAGGCACCATAAACATATT
* * * * ** * * * * **
52131 CTTCTCATTAGGATA-ATTGATATTAATGATTTTCTTTCGCATGAAAATCTTTACTTTGCC-TTA
64 CCTCTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT--TTTTCCACCA
*
52194 TTTTCCTTA-AAATCAAAGTTTATCTCTTAAA-
126 TTTT--TGATAAATC-AAGTTTATCTCTTAAAT
* * * * * * * *
52225 AAAACAAGCATCAATTCCCATAAC-AGTCTCCATTCTTTTCAAGATTTAGG-ACCCTAAACACAT
1 AAGACAAACATGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGA-TTAGGCACCATAAACATAT
* * * * * * * *
52288 TCC-CTTTAATAGGATACATGACATCGATTCTTTGGTGTAGCAAGAAAAGCTTTTATTTCCGCCG
63 TCCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCA
* *
52352 TTTTTGATATAATCAAAGTTTGTCTTTTAAAT
126 TTTTTGATA-AATC-AAGTTTATCTCTTAAAT
* * * * * * * *
52384 AA-AGCAAACATTAATACTCATACTAATCTCTATTCTTTTCAATACT-GGGATCCGA-AAACACA
1 AAGA-CAAACATGAATTCTCATACTAAT-TCCATTCTTTTTAAGATTAGGCA-CC-ATAAACATA
* ** * * * * ***
52446 TTCC-CTTCTTTAGGATACAAAACATTAAAGCTTCGGTGTCATAAGAAAAGCTTTTCTTTCCACC
62 TTCCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACC
* *
52510 ATTTTTGATAGAATCCAAGTTTTTCTCTTAAAA
125 ATTTTTGATA-AAT-CAAGTTTATCTCTTAAAT
* * *
52543 AAGATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACATAGTC
1 AAGACAAACATGAATTCTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATATTC
* *
52608 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTTTCCTCACCAGTT
65 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTC-CACCA-TT
** *
52672 TTTG-TAAAGTCTAAGTTCGTGC-CTAAAAT
128 TTTGATAAA-TC-AAGTTTAT-CTCTTAAAT
** * * * * * *
52701 GGGACAAAAATGGATTCT-AGTAATGA-TCATCATTCATTTTGT-A-ATTAGGCACTATAAACAC
1 AAGACAAACATGAATTCTCA-TACTAATTC--CATTC-TTTT-TAAGATTAGGCACCATAAACAT
* * * * * * *** * * *
52762 AATCTTTTCATTAGGATA-AGTGATATTGTTGATTTTCCTTTGCATGGAAATCTTTTTTTGCC-C
61 ATTCCTCTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTT-CCAC
* ** * *
52825 TATTTTTCTTAACATCATTGTTTATCCCTTAAAT
124 CATTTTTGATAA-ATCA-AGTTTATCTCTTAAAT
* * * * * * * *
52859 AAGA-AAAGCGTTG-ATTCTCATAAC-AGTCTCCATTATTTTCACA-ATTGGGAACTTAAAAGAC
1 AAGACAAA-C-ATGAATTCTCAT-ACTAAT-TCCATTCTTTTTA-AGATTAGGCAC-CATAA-AC
* * * *
52920 AT-TTCCT-TAATTAGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
59 ATATTCCTCTCATTAGGA-TACATGAC-ATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTC
* *
52982 CACCGTTTTTAATAGAATCATAGTTTATCTCTTAAAT
121 CACCATTTTTGATA-AATCA-AGTTTATCTCTTAAAT
* * * * *
53019 AAGACAAACATGAATACTCATACTAATCCCTTTTTTTTTCAAGATTAGGCACCATAAACATAGTC
1 AAGACAAACATGAATTCTCATACTAATTCCATTCTTTTT-AAGATTAGGCACCATAAACATATTC
* * * *
53084 TTCTCATTAGGATACACGATATT-AGTGCTTTGGTTTTGCAAG-AAAGGTTTTTTTCCCACCAAT
65 CTCTCATTAGGATACATGACATTGA-TGCTTTGGTTTTGCAAGAAAAGCTTTTTTT-CCACC-AT
** * * *
53147 TTTTG-TAAAGTTTAGCTTCAT-TACTCAATT
127 TTTTGATAAA-TCAAG-TTTATCT-CTTAAAT
* * * * * * * * * **
53177 GAGACAAACATGGATTCTCGTATTGATCTTCAATCATTTTT-TGATTAGGCACTATAAACACGTT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTC-TTTTTAAGATTAGGCACCATAAACATATT
* * * ** * * * * **
53241 -CTCCTCATTAGGATA-ATTGATATTAATGATTTTCTTTTGCATGGAAATCTTTACTTTGCC-TT
64 CCT-CTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT--TTTTCCACC
*
53303 ATTTTCCTTA-AAATCAAAGTTTATCTCTTAAA-
125 ATTTT--TGATAAATC-AAGTTTATCTCTTAAAT
* * * * * ** ****** * * ***
53335 AAAACAAGCATCAATTCCCATA--AACATAAAAAAAGATAAACA-TAAATACTCAT--AC-TAAT
1 AAGACAAACATGAATTCTCATACTAA-TTCCATTCTTTTTAAGATTAGGCAC-CATAAACAT-AT
** * * * * **
53394 TGCCATTCTTTTTAAGATTAGGCACCATAAACATAG-TCCTCTCATTAGGATACATGACATTGAT
63 T-CC--TCTCATTAGGA-T----A-CAT-GACATTGAT--GCT--TT-GG-T-TTTG-CA---A-
**** * * *
53458 GCTTTGGTTTAACAAGAAAGGCTTTTTCCTTACCAGTTTTTG-TAAATCCTAAGTTTGTAC-CTC
106 GAAAA-GCTT------------TTTTTCC--ACCA-TTTTTGATAAAT-C-AAGTTTAT-CTCTT
53521 AAAT
152 AAAT
** * * * * * *
53525 GGGACAAAAATGGATTCT-AGTAATGA-TCATCATTCATTTTGT-A-ATTAGGCACTATAAACAC
1 AAGACAAACATGAATTCTCA-TACTAATTC--CATTC-TTTT-TAAGATTAGGCACCATAAACAT
* * * * * *** * * * ***
53586 ATTCTTTTCATTAGGATA-AGTGATATTGTTGATTTTCCTTTGCATGGAAATCTTTTTTTTGTCC
61 ATTCCTCTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCCACC
** * *
53650 TATTTTTCTTAACATCATTGTTTATCCCTTAAAT
125 -ATTTTTGATAA-ATCA-AGTTTATCTCTTAAAT
* * * * * * * *
53684 AAGAAAAACGCTG-ATTCTCATAAC-AGTCTCCATTCTTTTCAGGATTAGGAACTTAAAAGACAT
1 AAGACAAAC-ATGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCAC-CATAA-ACAT
* * * * *
53747 -TTCCT-TAATTAGGATTACAAGACAATT-ATGCTTTGGTCTCGCAAGCAAAGCTTTTCTTTCCA
61 ATTCCTCTCATTAGGA-TACATGAC-ATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCA
* *
53809 CCGTTTTTAATAGAATCACAGTTTATCTCTTAAAT
123 CCATTTTTGATA-AATCA-AGTTTATCTCTTAAAT
* * * * * * *
53844 AAGACAAACATGAATACTCACACTAATCCCCTTTCTTTTTCAGGATTAGGCATCATAAACATAGT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTCTTTTT-AAGATTAGGCACCATAAACATATT
* * * *
53909 CTTCTCATTAGGATACACGATATT-AGTGCTTTGGTTTTGCAAG-AAAGGTTTTTTTCCCACCAA
64 CCTCTCATTAGGATACATGACATTGA-TGCTTTGGTTTTGCAAGAAAAGCTTTTTTT-CCACC-A
** * * *
53972 TTTTTG-TAAAGTTTAGCTTCAT-TACTCAATT
126 TTTTTGATAAA-TCAAG-TTTATCT-CTTAAAT
* * * ** * * * * * *
54003 GAGACAAACATGGATTCTCGTGTTGATCTTCAGTCATTTTT-TGATTAGGCACTATAAACACATT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTC-TTTTTAAGATTAGGCACCATAAACATATT
* * * * ** * * * * **
54067 CTTCTCATTAGGATA-ATTGATATTAATGATTTTCTTTCGCATGAAAATCTTTACTTTGCC-TTA
64 CCTCTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT--TTTTCCACCA
*
54130 TTTTCCTTA-AAATCAAAGTTTATCTCTTAAA-
126 TTTT--TGATAAATC-AAGTTTATCTCTTAAAT
* * * * * * * *
54161 AAAACAAGCATCAATTCCCATAAC-AGTCTCCATTC-TTTCAAGATTTAGG-ACCCTAAACACAT
1 AAGACAAACATGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGA-TTAGGCACCATAAACATAT
* * * * * * * *
54223 TCC-CTTTAATAGGATACATGACATCGATTCTTTGGTGTAGCAAGAAAAGCTTTTATTTCCGCCG
63 TCCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCA
* *
54287 TTTTTGATATAATCAAAGTTTGTCTTTTAAAT
126 TTTTTGATA-AATC-AAGTTTATCTCTTAAAT
* * * * * * * *
54319 AA-AGCAAACATTAATACTCATACTAATCTCTATTCTTTTCAATACT-GGGATCCGA-AAACACA
1 AAGA-CAAACATGAATTCTCATACTAAT-TCCATTCTTTTTAAGATTAGGCA-CC-ATAAACATA
* ** * * * * ***
54381 TTCC-CTTCTTTAGGATACAAAACATTAAAGCTTCGGTGTCATAAGAAAAGCTTTTCTTTCCACC
62 TTCCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACC
* *
54445 ATTTTTGATAGAATCCAAGTTTTTCTCTTAAAA
125 ATTTTTGATA-AAT-CAAGTTTATCTCTTAAAT
* * * *
54478 AAGATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCCCCATAAACATAGTC
1 AAGACAAACATGAATTCTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATATTC
* * *
54543 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCTCACCAGTT
65 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTC-CACCA-TT
* ** *
54607 TTTG-TATAGTCTAAGTTCGTGC-CTCAAAT
128 TTTGATA-AATC-AAGTTTAT-CTCTTAAAT
* * * * * *
54636 -GGCACAAAAATGGATTCT-AGTAATGA-TCATCATTCATTTTGT-A-ATTAGGCACTATAAACA
1 AAG-ACAAACATGAATTCTCA-TACTAATTC--CATTC-TTTT-TAAGATTAGGCACCATAAACA
* * * * * * * * * *
54696 CATT-CTCCTCATTCGGATA-ATTGATATTAATGATCTT-CTTTTGCATGGAAATCTTTACTTTG
60 TATTCCT-CTCATTAGGATACA-TGACATTGATGCT-TTGGTTTTGCAAGAAAAGCTTT--TTTT
** * *
54758 CC-TTATTTTCCTTA-AAATCAAAGTTTATCTTTTAAA-
120 CCACCATTTT--TGATAAATC-AAGTTTATCTCTTAAAT
* * * * * * * ** *
54794 AAAACAAGCATTAATTCCCATA-TCAGTGTCCATTCTTTTCAAGATTTGGGGCCATAAACACATT
1 AAGACAAACATGAATTCTCATACT-AAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATATT
* * * * * * *
54858 CC-CTTTAATAGGATACATGACATCGATTCTTTGGTGTAGCAAGAAAAGCTTTTATTTCCTCCAT
64 CCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCAT
* *
54922 TTTTGATATAATCGAAGTTTGTCTTTTAAAT
127 TTTTGATA-AATC-AAGTTTATCTCTTAAAT
* * * ** * * * * *
54953 AA-AGCAAACATTAATACTCATACTAATCCCTATTCTTTTCGAGACT-GGGATC-TGGAAGCACA
1 AAGA-CAAACATGAATTCTCATACTAATTCC-ATTCTTTTTAAGATTAGGCACCAT--AAACATA
* ** * * * * * *
55015 TTCC-CTTCTTTAGGATACAAAACATTAACGCTTTGGTGTCGTAAGGAAAGCTTTTCTTTCCACC
62 TTCCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACC
* * *
55079 GTTTTTGATAGAATCAAAGTTTTTCTCTTAAAA
125 ATTTTTGATA-AATC-AAGTTTATCTCTTAAAT
* * *
55112 AAGATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACATAGTC
1 AAGACAAACATGAATTCTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATATTC
* * *
55177 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTAGCAAGAAAGGC-TTTTTCCTCACCAGTT
65 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTC-CACCA-TT
** ** *
55241 TTTG-TAAAGTCTAAGTTCGTGACTCAAAT
128 TTTGATAAA-TC-AAGTTTATCTCTTAAAT
* * * * * *
55270 AGGACAAAAATGGATT-T--TAGTAATGATCATCATTCATTTTGT-A-ATTAGGCGCTATAAACA
1 AAGACAAACATGAATTCTCATACTAAT--TC--CATTC-TTTT-TAAGATTAGGCACCATAAACA
* * * * * * * *** * * *
55330 CATTCTTTTTATTAGGATA-AGTGATATTGTTGATTTTCCTTTGCATGGAAATCTTTTTTTTGCC
60 TATTCCTCTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTTTTT-CC
* ** * * *
55394 -CTATTTTTCTTAACGTCATTGTTTATCCCTTAAAT
122 ACCATTTTTGATAA-ATCA-AGTTTATCTCTTAAAT
* * * * * * * * * * *
55429 AAGAAAAACGTTG-ATTCTCATAAC-AGTCTCCATTATTTTCAGGAATGGGAACTTAAAAGACAT
1 AAGACAAAC-ATGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCAC-CATAA-ACAT
* * * *
55492 -TTCCT-TAATTAGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCA
61 ATTCCTCTCATTAGGA-TACATGAC-ATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCA
*
55554 CCATTTTTAATAGAATCACAGTTTATCTCTTAAAT
123 CCATTTTTGATA-AATCA-AGTTTATCTCTTAAAT
* * * * * * * *
55589 AAGACAAACATGAATACTCATACTACTCCCCTTTGTTTTTCAGGATTAGGGACCATAAACATAGT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTCTTTTT-AAGATTAGGCACCATAAACATATT
* * ** *
55654 CTTCTCATTAGGATACATGATATT-AGTGCTTTGGTTTCACAAGAAATG-TTTTTTTCCCACCAA
64 CCTCTCATTAGGATACATGACATTGA-TGCTTTGGTTTTGCAAGAAAAGCTTTTTTT-CCACC-A
** * *
55717 TTTTTG-TAAAGTTTAGCTTTAT-TACTCAATT
126 TTTTTGATAAA-TCAAG-TTTATCT-CTTAAAT
* * * * * * * * * *
55748 GAGACAAACATGGATTCTCGTATTGATCTTCAGTCATTTTT-TGATTAGGCACTATAAACACATT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTC-TTTTTAAGATTAGGCACCATAAACATATT
* * * ** * * * * **
55812 -CTCCTCATTAGGATA-ATTGATATTAATGATTTTCTTTTGCATGGAAATCTTTACTTTGCC-TT
64 CCT-CTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT--TTTTCCACC
* *
55874 ATTTTCCTTA-AAATCAAAGTTTATCGCTTAAA-
125 ATTTT--TGATAAATC-AAGTTTATCTCTTAAAT
* * * * * * * * * *
55906 AAAACAAGCATCAATTCCCATAAC-AGTCTCTATTCTTTTCAAGATTTGGGACCATAAACACATT
1 AAGACAAACATGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATATT
* * * * * * *
55970 -TTCTTCTTTAGGATACATGACATTGAAGCTTTGGTGTTGTAAGAATAGCATTTTTTTCCACCTT
64 CCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTTTTTCCACC-A
*
56034 TTTTTGATAGAATCAAAGTTTTTCTCTTATAA-
126 TTTTTGATA-AATC-AAGTTTATCTCTTA-AAT
* * * *
56066 AAGAC--ACATGAATACTCATACTAATCCCCATTCCTTTTAGGATTAGGCACCATAAACATAGTT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATA-TT
* ** * * * * * *
56129 -TTCTTTTTAGTATACACGACATTGATGCTTTGG-TTCGCAAG-AAAGGTTTTTTCCCACCAAAT
64 CCTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCCACC-ATT
* * *
56191 TTTG-TAAAGTCTAAGTTCGAGC-CTCAAAT
128 TTTGATAAA-TC-AAGTT-TATCTCTTAAAT
* ** * * * * * * *
56220 GAGACAAAGGTGGATTCT-AGTAATTATCTTCATTCATTTGGT-A-ATTAGGCACTATAAACACA
1 AAGACAAACATGAATTCTCA-TACTAAT-TCCATTC-TTT-TTAAGATTAGGCACCATAAACATA
* * * * * ** * * *
56282 TTCTTTTCATTAGGATA-AGTGATATCGATGATTTTCTTTTGCATGGAAATCTTGTTTTTTGCC-
62 TTCCTCTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGC-T-TTTTTT-CCA
** ** *
56345 TTATTTTTCTTAAAATCAAAGTTTATCCCTTAAAT
123 CCATTTTTGAT-AAATC-AAGTTTATCTCTTAAAT
* ** * * * * * * *
56380 AAGACAAGCACCAATTCTCGTAAC-AATCTCCATTCTTTTCAAAATTGGGAACCAAAAACACATT
1 AAGACAAACATGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATATT
* * * *
56444 CC-CTTCATTAGGATGCATGGCATTAATGCTTTGGTATTGCAAGAAAAGCTTTTCTTTCCACCAT
64 CCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCAT
* *
56508 TTTTTATAGAATCAAAGTTTGTCTCTTAAAT
127 TTTTGATA-AATC-AAGTTTATCTCTTAAAT
* ** * * * * * *
56539 AAGAAAAACATGAATAGTCATACTAATCCCCTT-TCTTTCATGATTAGGCACTATAAACATAATC
1 AAGACAAACATGAATTCTCATACTAATTCCATTCT-TTTTAAGATTAGGCACCATAAACATATTC
* * * ** * * *
56603 TTCTCTTTAGGATACATGACATTGTTAT-C-TTGGTTTCGCGTGAAGAGC-ATTTTCCCACCAAT
65 CTCTCATTAGGATACATGACATTG--ATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCCACC-AT
* * * *
56665 TTTT-CTAAAGTTTAAGTTTGTGC-CTCAAAT
127 TTTTGATAAA--TCAAGTTTAT-CTCTTAAAT
* * * * * * * * * ** *
56695 AGGACAAAAATGGATTGT-AGTTA-TGATCTTCGTTCATTTTGT-A-ATTAGGCACTACAGTCTT
1 AAGACAAACATGAATTCTCA--TACTAAT-TCCATTC-TTTT-TAAGATTAGGCACCATAAACAT
* * * * * ** * * * *
56756 ATT-CTCCTCCTTAAGATA-AGTGATATTGTTGATTTTCTTTTGCATGTAAATCTTTTCTTCGC-
61 ATTCCT-CTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTC-CA
** * * *
56818 CCTATTTTTCTTAAAATGAAGGTTCATCCCTTAAAT
123 CC-ATTTTTGAT-AAATCAA-GTTTATCTCTTAAAT
* * * * * * * * * * * *
56854 AAGACAAGCATCG-ATTTTCGA-AATACTGTGCAATATTTTCAGGATTGGGAACC-TAAAACACA
1 AAGACAAACAT-GAATTCTC-ATACTAAT-TCCATTCTTTTTAAGATTAGGCACCAT-AAACATA
* ** *
56916 TTCC-CTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTTCACC
62 TTCCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACC
* * * *
56980 ATTTTTGATAGAGTCAAATTTTGTCTCCTAAAT
125 ATTTTTGATA-AATC-AAGTTTATCTCTTAAAT
* * * * * * * * *
57013 AAGGCAAATATAAATACTCATACT-ATTCCCCATTCTTTTCAGGATTAGGCACTATAAAAATAGT
1 AAGACAAACATGAATTCTCATACTAATT--CCATTCTTTTTAAGATTAGGCACCATAAACATATT
* * * * * * * * * * * *
57077 CTTCTTATTTGGATTCACGATATTGGA-GCATTGATTTTGCAAGAAAGGCATTTTTCCCACCACT
64 CCTCTCATTAGGATACATGACATT-GATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCCACCATT
* * ** *
57141 TTTG-TAAGGTTAAGTTCGTGC-CTCAAAT
128 TTTGATAA-ATCAAGTTTAT-CTCTTAAAT
** * * * * * * *** * * *
57169 GTGACAAACGTGGATTCT-AGTAATGAGCTT-CTTTCATTTTGTTATTGGGCACTATAAACACAT
1 AAGACAAACATGAATTCTCA-TACT-A-ATTCCATTCTTTTTAAGATTAGGCACCATAAACATAT
* * * ** * ** * * * **
57232 CCCCCTCTC-TAAGG-TAAATGATGTTGATGATTTTCTTTTGCATGAAAATCTTTATTTGCC-TG
63 --TCCTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT-TTTTCCACC
*** * * *
57294 ATTTTCCTTAAGATCAAAGTTT-GCCCTTTGAAT
125 ATTTTTGATAA-ATC-AAGTTTATCTC-TTAAAT
* * * * * * * * * *
57327 AAGACAAGCATCG-ATTGTTATA-AAAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACAT
1 AAGACAAACAT-GAATTCTCATACTAA-T-TCCATTCTTTTTAAGATTAGGCACCATAAACATAT
* * * * *
57390 TCC-CTTCATTAGGATATAAGACATTGATGCTTTGG-TGTGCAAGAAAAGCTTCTCTTTCCACCG
63 TCCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTT-TTTTTCCACCA
* * **
57453 TTTTTGATAGAATAAATGTGTGCCTC-TAAGAT
126 TTTTTGATA-AATCAA-GTTTATCTCTTAA-AT
* * * * * * *
57485 AAGGCAATCATGAATACTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTG
1 AAGACAAACATGAATTCTCATACTAATTCC-ATTCTTTTTAAGATTAGGCACCATAAACATATTC
* * * * * * *
57550 TTCTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAA-ATAAG-GTTTTTTACAGTCAAAT
65 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCCA--C-CAT
** *
57613 TTTT-ATAAAGTCTAAGTTCGTGC-CTCAAAT
127 TTTTGATAAA-TC-AAGTTTAT-CTCTTAAAT
* * * * * * * * * *
57643 GAA-ACAAACATGGATTCT-AGTAATGATCTTCTTTCATTTTGAGATTAGGCACTATGAGTACGT
1 -AAGACAAACATGAATTCTCA-TACTAAT-TCCATTCTTTTTAAGATTAGGCACCAT-A-AACAT
* * * * * * *
57706 -TAT-C-CTCATTAGGATA-ACTGATATTAATGATTT--TCTTCCACATGGAAATCTTTTCTTTG
61 AT-TCCTCTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCA-A-GAAAAGCTTTT-TTT-
* ** * * * *
57765 TC-GTATTTTCCT-A-AAATTAAAGTTCATCCCTGAAAT
120 CCACCATTTT--TGATAAA-TCAAGTTTATCTCTTAAAT
** * * * * * * * * *
57801 AAGACAGGCACCG-ATTATCGTAAC-AATCTCCACTCTTTTCAAGATTGGGAACCAAAAACACAT
1 AAGACAAACA-TGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATAT
* * *** *
57864 TCC-CTTCATTAGGATACATCACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCG
63 TCCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCA
* * *
57928 TTTTTTATTGAATCGAAGTTTGTCTCTTAAAT
126 TTTTTGA-TAAATC-AAGTTTATCTCTTAAAT
** * * * * * *
57960 AAGACAAACATGAATAGTCATGCTAATCCCCATT-TTTTCAGGATTTGGCACCATAAACATAGTC
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATATTC
* ** * ** * * * * *
58024 TTCTCATTAGGATACGCGATATTGATATTTTGGTTTCGTACGAAAGGC-ATTTTTCCTACCAATT
65 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCC-ACC-ATT
**
58088 TTT-ATAAAGTCTAAGTTCGTGCGTC--AAAT
128 TTTGATAAA-TC-AAGTTTAT-C-TCTTAAAT
* * * * * * * * *
58117 AAGACAAAC-TTAGATTCT-AGTAATGATCTTCATTCATTTGCT-A-ATTAGGCACTACAATCAC
1 AAGACAAACATGA-ATTCTCA-TACTAAT-TCCATTC-TTT-TTAAGATTAGGCACCATAAACAT
* * * ** * * * *
58178 ATT-CTCCTCATTAGGATA-AGTGATATTGTTGATTTTCTTTTACATGGAAATCTTTTCTTTGCC
61 ATTCCT-CTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTT-CC
* ** * * *
58241 -CTATTTTCCATAAATGAAAGTTCATCCCTTAAAT
122 ACCATTTTTGATAAAT-CAAGTTTATCTCTTAAAT
* * * * * * * * *
58275 AGGA-AAAGCATCG-ATTTTCAAAATAGTCTCCATTATTTTCAAGATTAGGAACC-TAAAACACA
1 AAGACAAA-CAT-GAATTCTCATACTAAT-TCCATTCTTTTTAAGATTAGGCACCAT-AAACATA
* * * * ** * *
58337 TTTCAT-TCATTAAGATACATGACATTAATGCTTTGGTATCACAAGAAATGCTTTTCTTTTCACC
62 -TTCCTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACC
*
58401 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
125 ATTTTTGATA-AATC-AAGTTTATCTCTTAAAT
* * * * *
58434 AAGACAAACATGAATAT-TCATACT-ATTCCCTGTTCTATTCAGGATTCA-GCACCATAAATATA
1 AAGACAAACATGAAT-TCTCATACTAATT-CC-ATTCTTTTTAAGATT-AGGCACCATAAACATA
* * * ** * *** * *
58496 GTTTC-CTCATTAGGATACACGATATTGGCGCTTTGATTTTGTTGGAAAGGCTTTTTTCCCACCA
62 -TTCCTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCCACC-
* * * * *
58560 ATTTTCG-TAAAGTCTAAGTTCATCCCTCAATT
125 ATTTTTGATAAA-TC-AAGTTTATCTCTTAAAT
* * * * * * * * *** * *
58592 GAGACAAACAAGGATTCT-AGTAATGATCTTCTTTCATTTTGTTATTAGGCACTATAAACACATT
1 AAGACAAACATGAATTCTCA-TACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATATT
* * ** * ** * * * * **
58656 CCTTTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGTC-TGAT
64 CCTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTT-CCACCAT
* ***
58720 TTTCT-TTAATATCAAAGTTCGCCGT-TTAAAT
127 TTT-TGATAA-ATC-AAGTTTATC-TCTTAAAT
* * * ** * * * *
58751 AAGACAAGCATTG-ATTCTCATAAC-GATCCTCATTCTTTGCAAGATTGGGAACCAAAAACACAT
1 AAGACAAACA-TGAATTCTCAT-ACTAATTC-CATTCTTTTTAAGATTAGGCACCATAAACATAT
* * * * * * * *
58814 TCC-CTTTATTAGGATACAAGTCTTTGATGCTTTGGTGTAGGAAGAAAAGCTTTTCTTTCCACCG
63 TCCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCA
* *
58878 TTTTTGATAGAATCAATGTTTGTCACTTAAAT
126 TTTTTGATA-AATCAA-GTTTATCTCTTAAAT
* * * * *** * *
58910 AAGGCAAACATGAATACTCATTCTAATCCCCATTCTTTGCGAGATTAGGCACCAT-AACATAGTG
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATATTC
* * * ****
58974 TTCTCATTAGGATACATGATATTGATGCTTT-GTTCT-C------A--TTGGGGT--A-CA----
65 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCCACCATTTT
**
59022 TG-TAAAGTCTAAGTTCGTGC-CTTAAAT
130 TGATAAA-TC-AAGTTTAT-CTCTTAAAT
* * * * * * * * * *
59049 -CGACAAACATGGACTCT-AGTAATGATCTTCATTCATTTTAAGATTAGACACTATAAACACATT
1 AAGACAAACATGAATTCTCA-TACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATATT
** * ***
59112 -CTC-CACTTTAGGATA-ATGATTTTGATGATTTCACTTTGCACAGAAATA--TTTTCTTTGCC-
64 CCTCTCA--TTAGGATACATGACATTGATGCTTTGGTTTTGCA-AGAAA-AGCTTTT-TTT-CCA
* **
59171 CTATTTTCCT-A-AAATCAAAGTACATAC-CTTAAAT
123 CCATTTT--TGATAAATC-AAGTTTAT-CTCTTAAAT
* * * * * * *
59205 AA-AAAAAGCATCG-ATTCTCGTAACT-GTCTCCATTCTTTTCAAGATTGGGAACC-TAAAACAC
1 AAGACAAA-CAT-GAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCACCAT-AAACAT
* * * * * * * *
59266 ATTCC-CTTTAATAGGATACATGAAATCGATCCTGTGGTGTAGCAAGAAAAGCTTTTCTTTCCAC
61 ATTCCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCAC
* * *
59330 CGTTTTTGATATAATCAAAGTTTGTCTTTTAAAT
124 CATTTTTGATA-AATC-AAGTTTATCTCTTAAAT
* * * * * *
59364 AA-AGCAAACATTAATACTCATACTAATCCCTATTCTTTTCAAGACTAGG-ATCCGA-AAACACA
1 AAGA-CAAACATGAATTCTCATACTAATTCC-ATTCTTTTTAAGATTAGGCA-CC-ATAAACATA
* ** * * * * * *
59426 TTCC-CTTCTTTAGGATACAAAACATTAAAGCTTTGGTGTCGTAAAAAAAGCTTTTCTTTCCACC
62 TTCCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACC
* * *
59490 GTTTTTGATAGAATCAAAGTTTTTCTCTTAAAA
125 ATTTTTGATA-AATC-AAGTTTATCTCTTAAAT
* * *
59523 AAGATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACATAGTC
1 AAGACAAACATGAATTCTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATATTC
* * *
59588 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCTCACCAGTT
65 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTC-CACCA-TT
** *
59652 TTTG-TAAAGTCTAAGTTCGTGC-CTAAAAT
128 TTTGATAAA-TC-AAGTTTAT-CTCTTAAAT
** * * * * * *
59681 GGGACAAAAATGGATTCT-AGTAATGA-TCATCATTCATTTTGT-A-ATTAGGCACTATAAACAC
1 AAGACAAACATGAATTCTCA-TACTAATTC--CATTC-TTTT-TAAGATTAGGCACCATAAACAT
* * * * * *** * * *
59742 ATTCTTTTCATTAGGATA-AGTGATATTGTTGATTTTCCTTTGCATGGAAATCTTTTTTTTGCC-
61 ATTCCTCTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTTTTT-CCA
* ** * *
59805 CTATTTTTCTTAACATCATTGTTTATCCCTTAAAT
123 CCATTTTTGATAA-ATCA-AGTTTATCTCTTAAAT
* * * * * * * * * *
59840 AAGAAAAACGTTG-ATTCTCATAAC-AGTCTCCATTATTTTCATGATTGGGAACTTAAAAGACAT
1 AAGACAAAC-ATGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCAC-CATAA-ACAT
* * * *
59903 -TTCCT-TAATTAGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
61 ATTCCTCTCATTAGGA-TACATGAC-ATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCA
* *
59965 CCGTTTTTAATAGAATCATAGTTTATCTCTTAAAT
123 CCATTTTTGATA-AATCA-AGTTTATCTCTTAAAT
* * * * *
60000 AAGACAAACATGAATACTCATACTAATCCCTTTTTTTTTCAAGATTAGGCACCATAAACATAGTC
1 AAGACAAACATGAATTCTCATACTAATTCCATTCTTTTT-AAGATTAGGCACCATAAACATATTC
* * *
60065 TTCTCATTAGGATACACT-ATATT-AGTGCTTTGGTTTTGCAAG-AAAGGTTTTTTTCCCACCAA
65 CTCTCATTAGGATACA-TGACATTGA-TGCTTTGGTTTTGCAAGAAAAGCTTTTTTT-CCACC-A
** * * *
60127 TTTTTG-TAAAGTTTAGCTTCAT-TCCTCAATT
126 TTTTTGATAAA-TCAAG-TTTATCT-CTTAAAT
* * * * * * * * * **
60158 GAGACAAACATGGATTCTCGTATTGATCTTCAATCATTTTT-TGATTAGGCACTATAAACACGTT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTC-TTTTTAAGATTAGGCACCATAAACATATT
* * * ** * * * * **
60222 -CTCCTCATTAGGATA-ATTGATATTAATGATTTTCTTTTGCATGGAAATCTTTACTTTGCC-TT
64 CCT-CTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT--TTTTCCACC
*
60284 ATTTTCCTTA-AAATCAAAGTTTATCTCTTAAA-
125 ATTTT--TGATAAATC-AAGTTTATCTCTTAAAT
* * * * ** ****** * * ***
60316 AAAACAAGCATCAATTCCCATA--AATATAAAAAAAGATAAACA-TAAATACTCAT--AC-TAAT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTCTTTTTAAGATTAGGCAC-CATAAACAT-AT
** * * ** **
60375 TGCCATTCTTTTTAAGATTAGGCACCATAAACATACTCCT-CTCATTAGGATACATGACATTGAT
63 T-CC--TCTCATTAGGA-T----A-CAT-GACAT--TGATGCT--TT-GG-T-TTTG-CA---A-
**** * * *
60439 GCTTTGGTTTAACAAGAAAGGCTTTTTCCTCACCAGTTTTTG-TAAATCCTAAGTTTGTAC-CTC
106 GAAAA-GCTT------------TTTTT-C-CACCA-TTTTTGATAAAT-C-AAGTTTAT-CTCTT
60502 AAAT
152 AAAT
** * * * * * *
60506 GGGACAAAAATGGATTCT-AGTAATGA-TCATCATTCATTTTGT-A-ATTAGGCACTATAAACAC
1 AAGACAAACATGAATTCTCA-TACTAATTC--CATTC-TTTT-TAAGATTAGGCACCATAAACAT
* * * * * *** * * * ***
60567 ATTCTTTTCATTAGGATA-AGTGATATTGTTGATTTTCCTTTGCATGGAAATCTTTTTTTTTGTC
61 ATTCCTCTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTTTTTCCAC
** * *
60631 CAATTTTTCTTAACATCATTGTTTATCCCTTTAAAT
124 C-ATTTTTGATAA-ATCA-AGTTTATCTC-TTAAAT
* * * * * * * * *
60667 AAGA-AAAGCATTG-ATTCTCATAAC-AGTCTCCACTCTTTTCAGGAATGGGAACTTAAAAGACA
1 AAGACAAA-CA-TGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCAC-CATAA-ACA
* * * * *
60729 T-TTCCT-TAATTAGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGCAAAGCTTTTCTTTCC
60 TATTCCTCTCATTAGGA-TACATGAC-ATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCC
* *
60791 ACCGTTTTTAATAGAATCACAGTTTATCTCTTAAAT
122 ACCATTTTTGATA-AATCA-AGTTTATCTCTTAAAT
* * * * * * *
60827 AAGACAAACATGAATACTCACACTAATCCCCTTTCTTTTTCAGGATTAGGCATCATAAACATAGT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTCTTTTT-AAGATTAGGCACCATAAACATATT
* * * *
60892 CTTCTCATTAGGATACACGATATT-AGTGCTTTGGTTTTGCAAG-AAAGGTTTTTTTCCCACCAA
64 CCTCTCATTAGGATACATGACATTGA-TGCTTTGGTTTTGCAAGAAAAGCTTTTTTT-CCACC-A
** * * *
60955 TTTTTG-TAAAGTTTAGCTTCAT-TACTCAATT
126 TTTTTGATAAA-TCAAG-TTTATCT-CTTAAAT
* * ** * * * * * *
60986 GAGACAAACATGGATTCTCATGTTGATCTTCAGTCATTTTT-TGATTAGGCACTATAAACACATT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTC-TTTTTAAGATTAGGCACCATAAACATATT
* * * * ** * * * * **
61050 CTTCTCATTAGGATA-ATTGATATTAATGATTTTCTTTCGCATGAAAATCTTTACTTTGCC-TTA
64 CCTCTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT--TTTTCCACCA
*
61113 TTTTCCTTA-AAATCAAAGTTTATCTCTTAAA-
126 TTTT--TGATAAATC-AAGTTTATCTCTTAAAT
* * * * * * * * * *
61144 AAAACAAGCATCAATTCCCATAAC-AGTCTCCATTCTTTTCAAGATTTGGGACCCTAAACACATT
1 AAGACAAACATGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATATT
* * * * * * * *
61208 CC-CTTTAATAGGATACATGACATCGATTCTTTGGTGTAGCAAGAAAAGCTTTTATTTCCGCCGT
64 CCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCAT
* *
61272 TTTTGATATAATCAAAGTTTGTCTTTTAAAT
127 TTTTGATA-AATC-AAGTTTATCTCTTAAAT
* * * * * * *
61303 AA-AGCAAACATTAATACTCATACTAATCCCTATTCTTTTCAAGACT-GGGATCCGA-AAACACA
1 AAGA-CAAACATGAATTCTCATACTAATTCC-ATTCTTTTTAAGATTAGGCA-CC-ATAAACATA
* ** * * * *** *
61365 TTCC-CTTCTTTAGGATACAAAACATTAAAGCTTTGGTGTCATAAGAAAAGCCTTTCTTTCCACC
62 TTCCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAG-CTTTTTTTCCACC
* *
61429 ATTTTTGATAGAATCCAAGTTTTTCTCTTAAAA
125 ATTTTTGATA-AAT-CAAGTTTATCTCTTAAAT
* * *
61462 AAGATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACATAGTC
1 AAGACAAACATGAATTCTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATATTC
* * *
61527 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCTCACCAGTT
65 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTC-CACCA-TT
** *
61591 TTTG-TAAAGTCTAAGTTCGTGC-CTCAAAT
128 TTTGATAAA-TC-AAGTTTAT-CTCTTAAAT
** * * * * * *
61620 GGGACAAAAATGGATTCT-AGTAATGA-TCATCATTCATTTTGT-A-ATTAGGCACTATAAACAC
1 AAGACAAACATGAATTCTCA-TACTAATTC--CATTC-TTTT-TAAGATTAGGCACCATAAACAT
* * * * * * * *
61681 ATT-CTCCTCATTAGGATA-ATTGATATTAATGATCTT-CTTTTGCATGGAAATCTTTACTTTGC
61 ATTCCT-CTCATTAGGATACA-TGACATTGATGCT-TTGGTTTTGCAAGAAAAGCTTT--TTTTC
** * *
61743 C-TTATTTTCCTTA-AAATCAAAGTTTATCTTTTAAA-
121 CACCATTTT--TGATAAATC-AAGTTTATCTCTTAAAT
* * * * * * * * *
61778 AAAACAAGCATTAATTCCCATAAC-AGTGTCCATTCTTTTCAAGATTTGGGACCATAAACACATT
1 AAGACAAACATGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATATT
* * * * * * *
61842 CC-CTTTAATAGGATACATGACATCGATTCTTTGGTGTAGCAAGAAAAGCTTTTATTTCCACCGT
64 CCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCAT
* *
61906 TTTTGATATAATCGAAGTTTGTCTTTTAAAT
127 TTTTGATA-AATC-AAGTTTATCTCTTAAAT
* * * ** * * * *
61937 AA-AGCAAACATTAATACTCATACTAATCCCTATTCTTTTCGAGACT-GGGATC-TAGAAGCACA
1 AAGA-CAAACATGAATTCTCATACTAATTCC-ATTCTTTTTAAGATTAGGCACCATA-AA-CATA
* ** * * * *** *
61999 TTCC-CTTCTTTAGGATACAAAACATTAACGCTTTGGTGTCATAAGGAAAGCTTTTCTTTCCACC
62 TTCCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACC
* * *
62063 GTTTTTGATAGAATCAATGTTTTTCTCTTAAAA
125 ATTTTTGATA-AATCAA-GTTTATCTCTTAAAT
* * *
62096 AAGATAAACATGAATACTCATACTAATTGCCATTCTTTTTAAGATTAGGCACCATAAACATAGTC
1 AAGACAAACATGAATTCTCATACTAATT-CCATTCTTTTTAAGATTAGGCACCATAAACATATTC
* * *
62161 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTAGCAAGAAAGGC-TTTTTCCTCACCAGTT
65 CTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTC-CACCA-TT
*
62225 TTTG-TAAAGTCTAAGTTTGTGC-CTTAAAT
128 TTTGATAAA-TC-AAGTTTAT-CTCTTAAAT
* * * * * *
62254 AGGACAAAAATGGATT-T--TAGTAATGATCATCATTCATTTTGT-A-ATTAGGCGCTATAAACA
1 AAGACAAACATGAATTCTCATACTAAT--TC--CATTC-TTTT-TAAGATTAGGCACCATAAACA
* * * * * * * *** * * *
62314 CATTCTTTTTATTAGGATA-AGTGATATTGTTGATTTTCCTTTGCATGGAAATCTTTTTTTTGCC
60 TATTCCTCTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTTTTT-CC
* ** * * *
62378 -CTATTTTTCTTAATGTCATTGTTTATCCCTTAAAT
122 ACCATTTTTGATAA-ATCA-AGTTTATCTCTTAAAT
* * * * * * * * *
62413 AAGAAAAACGTTG-ATTCTCATAAC-AGTCTCCATTATTTTCAGGATT-GGAAACTTAAAAGACA
1 AAGACAAAC-ATGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGG-CAC-CATAA-ACA
* * * * *
62475 T-TTCCT-TAATTAGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGAAATGCTTTTATTTCC
60 TATTCCTCTCATTAGGA-TACATGAC-ATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCC
*
62537 ACCATTTTTAATAGAATCACAGTTTATCTCTTAAAT
122 ACCATTTTTGATA-AATCA-AGTTTATCTCTTAAAT
* * * * * *
62573 AAGACAAACATGAATACTCATACTAATCCCCTTTGTTTTTCAGGATTAGGCACCATAAACATAGT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTCTTTTT-AAGATTAGGCACCATAAACATATT
* * * *
62638 CTTCTCATTAGGATACATGATATT-AGTGCTTTGGTTTCGCAAGAAATG-TTTTTTTCCCACCAA
64 CCTCTCATTAGGATACATGACATTGA-TGCTTTGGTTTTGCAAGAAAAGCTTTTTTT-CCACC-A
** * *
62701 TTTTTG-TAAAGTTTAGCTTTAT-TACTCAATT
126 TTTTTGATAAA-TCAAG-TTTATCT-CTTAAAT
* * * * * * * * * *
62732 GAGACAAACATGGATTCTCGTATTGATCTTCAGTCATTTTTTA-ATTAGGCACTATAAACACATT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTC-TTTTTAAGATTAGGCACCATAAACATATT
* * * ** * * * * **
62796 -CTCCTCATTAGGATA-ATTGATATTAATGATTTTCTTTTGCATGGAAATCTTTACTTTGCC-TT
64 CCT-CTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT--TTTTCCACC
* *
62858 ATTTTCCTTA-AAATCAAAGTTTATCGCTTAAA-
125 ATTTT--TGATAAATC-AAGTTTATCTCTTAAAT
* * * * * * * * * *
62890 AAAACAAGCATCAATTCCCATAAC-AGTCTCTATTCTTTTCAAGATTTGGGACCATAAACACATT
1 AAGACAAACATGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATATT
* * * * * * * *
62954 -TTCTTCTTTAGGATACATGGCATTGAAGCTTTGGTGTTGTAAGAATAGCATTTTTTTCCACCTT
64 CCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTTTTTCCACC-A
*
63018 TTTTTGATAGAATCAAAGTTTTTCTCTTATAA-
126 TTTTTGATA-AATC-AAGTTTATCTCTTA-AAT
* * * *
63050 AAGAC--ACATGAATACTCATACTAATCCCCATTCCTTTTAGGATTAGGCACCATAAACATAGTT
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATA-TT
* ** * * * * * *
63113 -TTCTTTTTAGTATACACGACATTGATGCTTTGG-TTCGCAAG-AAAGGTTTTTTCCCACCAAAT
64 CCTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCCACC-ATT
* * *
63175 TTTG-TAAAGTCTAAGTTCGAGC-CTCAAAT
128 TTTGATAAA-TC-AAGTT-TATCTCTTAAAT
* ** * * * * * * *
63204 GAGACAAAGGTGGATTCT-AGTAATTATCTTCATTCATTTGGT-A-ATTAGGCACTATAAACACA
1 AAGACAAACATGAATTCTCA-TACTAAT-TCCATTC-TTT-TTAAGATTAGGCACCATAAACATA
* * * * * ** * * * *
63266 TTCTTTTCATTAGGATA-AGTGATATCGATGATTTTCTTTTGCATGGAAATCTTGTTTTTGCC-T
62 TTCCTCTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTT-TTTTT-CCAC
* ** *
63329 TATTTTTCTTAAAATCAAAGTTTGTCTCTTAAAT
124 CATTTTTGAT-AAATC-AAGTTTATCTCTTAAAT
* ** * * * * * * **
63363 AAGACAAGCACCAATTCTCGTAAC-AATCTCCATTCTTTTCAAAATTGGGAACCAAAAACGCATT
1 AAGACAAACATGAATTCTCAT-ACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATATT
* * * *
63427 CC-CTTCATTAGGATGCATGGCATTAATGCTTTGGTATTGCAAGAAAAGCTTTTCTTTCCACCAT
64 CCTC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCAT
* *
63491 TTTTTATAGAATCAAAGTTTGTCTCTTAAAT
127 TTTTGATA-AATC-AAGTTTATCTCTTAAAT
** * * * * * *
63522 AAGACAAACATGAATAGTCATACTAATCCCCTTTCTTTTCATGATTAGGCACTATAAACATAATC
1 AAGACAAACATGAATTCTCATACTAAT-TCCATTCTTTTTAAGATTAGGCACCATAAACATATTC
* * *
63587 TTCTCTTTAGGATACGTGACATTG
65 CTCTCATTAGGATACATGACATTG
63611 TTATCTTGGT
Statistics
Matches: 8476, Mismatches: 2577, Indels: 1937
0.65 0.20 0.15
Matches are distributed among these distances:
137 3 0.00
138 54 0.01
139 32 0.00
140 6 0.00
144 1 0.00
145 1 0.00
147 1 0.00
148 5 0.00
149 1 0.00
150 1 0.00
152 1 0.00
153 8 0.00
154 40 0.00
155 75 0.01
156 337 0.04
157 540 0.06
158 2861 0.34
159 2909 0.34
160 1068 0.13
161 265 0.03
162 47 0.01
163 14 0.00
164 8 0.00
165 2 0.00
166 2 0.00
167 4 0.00
169 2 0.00
170 4 0.00
171 4 0.00
172 2 0.00
173 4 0.00
175 2 0.00
176 4 0.00
177 4 0.00
178 4 0.00
181 4 0.00
182 2 0.00
183 2 0.00
184 9 0.00
185 3 0.00
186 10 0.00
187 1 0.00
188 13 0.00
189 30 0.00
190 38 0.00
191 14 0.00
192 10 0.00
193 14 0.00
194 10 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (155 bp):
AAGACAAACATGAATTCTCATACTAATTCCATTCTTTTTAAGATTAGGCACCATAAACATATTCC
TCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCCACCATTTTT
GATAAATCAAGTTTATCTCTTAAAT
Found at i:56852 original size:474 final size:473
Alignment explanation
Indices: 55011--61340 Score: 4558
Period size: 474 Copynumber: 13.3 Consensus size: 473
55001 GATCTGGAAG
* ** * * * *
55011 CACATTCCCTTCTTTAGGATACAAAACATTAACGCTTTGGTGTCGTAAGGAAAGCTTTTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * **
55076 ACCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAAAAAGATAAACATGAATACTCATACTAATTG
66 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * * * *
55141 CCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCTCTCATTAGGATACATGACATTGATGCT
131 CCTTTC-TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAT-CT
* * *
55206 TTGGTTTAGCAAGAAAGGCTTTTTCCTCACCAGTTTTTGTAAAGTCTAAGTTCGTGACTCAAAT-
194 TTGGTTTCGCAAGAAAGGCTTTTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * * *
55270 AGGACAAAAATGGATTTTAGTAATGATCATCATTCATTTTGTAATTAGGCGCTATAAACACATTC
258 A-GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTC
** * * * *
55335 TTTTTATTAGGATAAGTGATATTGTTGATTTTCCTTTGCATGGAAATCTTTTTTTTGCCCTATTT
322 TCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
** ** * * * * * * *
55400 TTCTTAACGTCATTGTTTATCCCTTAAATAAGAAAAACGTTGATTCTCATAACAGTCTCCATTAT
387 TTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCT
* * **
55465 TTTCAGGAATGGGAACTTAAAA
452 TTTCAAGATTGGGAACCAAAAA
* * * * *
55487 GACATTTCCTTAATTAGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGAAAAGCTTTTATTT
1 CACATTCCCTTCATTAGGA-TACATGAC-ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * * *
55551 CCACCATTTTTAATAGAATCACAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTACT
64 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT
* * *
55616 CCCCTTTGTTTTTCAGGATTAGGGACCATAAACATAGTCTTCTCATTAGGATACATGATATT-AG
129 CCCC-TT-TCTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGA-
* ** * ** **
55680 TGCTTTGGTTTCACAAGAAATGTTTTTTTCCCACCAATTTTTGTAAAGT-TTAGCTTTATTACTC
191 T-CTTTGGTTTCGCAAGAAA-GGCTTTTTCCCACCAATTTTTGTAAAGTCTAAG-TTCGTGCCTC
* * * * * *
55744 AATTGAGACAAACATGGATTCTCGTATTGATCTTCAGTCATTTTTTGATTAGGCACTATAAACAC
253 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACAC
* * * *
55809 ATTCTCCTCATTAGGATAATTGATATTAATGATTTTCTTTTGCATGGAAATCTTTACTTTGCCTT
318 ATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* * * * * * * *
55874 ATTTTCCTTAAAATCAAAGTTTATCGCTTAAA-AAAACAAGCATCAATTCCCATAACAGTCTCTA
383 ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCA
*
55938 TTCTTTTCAAGATTTGGG-ACCATAAA
448 TTCTTTTCAAGA-TTGGGAACCAAAAA
** * * * * *
55964 CACATTTTCTTCTTTAGGATACATGACATTGAAGCTTTGGTGTTGTAAGAATAGCATTTT-TTTC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTCTTTC
* *
56028 CACCTTTTTTTGATAGAATCAAAGTTTTTCTCTTATAA-AAGAC--ACATGAATACTCATACTAA
65 CACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTA-AATAAGACAAACATGAATACTCATACTAA
* * * ** * *
56090 TCCCCATTCCTTTTAGGATTAGGCACCATAAACATAGTTTTCTTTTTAGTATACACGACATTGAT
128 TCCCC-TTTCTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAT
* * *
56155 GCTTTGG-TTCGCAAGAAAGGTTTTTTCCCACCAAATTTTGTAAAGTCTAAGTTCGAGCCTCAAA
192 -CTTTGGTTTCGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
** * *
56219 TGAGACAAAGGTGGATTCTAGTAATTATCTTCATTCATTTGGTAATTAGGCACTATAAACACATT
256 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATT
** * * *
56284 CTTTTCATTAGGATAAGTGATATCGATGATTTTCTTTTGCATGGAAATCTTGTTTTTTGCCTTAT
321 CTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTT-TTCTTTGCCCTAT
* * * *
56349 TTTTCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCACCAATTCTCGTAACAATCTCCATT
385 TTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATT
*
56414 CTTTTCAAAATTGGGAACCAAAAA
450 CTTTTCAAGATTGGGAACCAAAAA
* * * * *
56438 CACATTCCCTTCATTAGGATGCATGGCATTAATGCTTTGGTATTGCAAGAAAAGCTTTTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * *
56503 ACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATAGTCATACTAATCC
66 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * * * *
56568 CCTTTCTTTCATGATTAGGCACTATAAACATAATCTTCTCTTTAGGATACATGACATTGTTATC-
131 CCTTTCTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTG--ATCT
** * * * *
56632 TTGGTTTCGCGTG-AAGAGCATTTTCCCACCAATTTTTCTAAAGTTTAAGTTTGTGCCTCAAAT-
194 TTGGTTTCGCAAGAAAG-GCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * * * * ** **
56695 AGGACAAAAATGGATTGTAGTTATGATCTTCGTTCATTTTGTAATTAGGCACTACAGTCTTATTC
258 A-GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTC
* * * * *
56760 TCCTCCTTAAGATAAGTGATATTGTTGATTTTCTTTTGCATGTAAATCTTTTCTTCGCCCTATTT
322 TCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * * * * * * *
56825 TTCTTAAAATGAAGGTTCATCCCTTAAATAAGACAAGCATCGATTTTCGA-AATACTGTGCAATA
387 TTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-ATAACAATCTCCATTC
* *
56889 TTTTCAGGATTGGGAACCTAAAA
451 TTTTCAAGATTGGGAACCAAAAA
* *
56912 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTTC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * * * *
56977 ACCATTTTTGATAGAGTCAAATTTTGTCTCCTAAATAAGGCAAATATAAATACTCATACTATTCC
66 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * * * * * *
57042 CCATTCTTTTCAGGATTAGGCACTATAAAAATAGTCTTCTTATTTGGATTCACGATATTGGAGCA
131 CCTTTC-TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATT-GATCT
* * * *
57107 TTGATTTTGCAAGAAAGGCATTTTTCCCACC-ACTTTTGTAAGGT-TAAGTTCGTGCCTCAAATG
194 TTGGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * * * * * * *
57170 TGACAAACGTGGATTCTAGTAATGAGCTTCTTTCATTTTGTTATTGGGCACTATAAACACATCCC
258 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCT
* * * *
57235 CCTC-TCTAAGG-TAAATGATGTTGATGATTTTCTTTTGCATGAAAATC-TTTATTTG-CCTGAT
323 CCTCAT-T-AGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-AT
* * * * * *
57296 TTTCCTTAAGATCAAAGTT--TGCCCTTTGAATAAGACAAGCATCGATTGTTATAA-AAGTCCCC
385 TTTTCTTAAAATCAAAGTTCAT-CCC-TTAAATAAGACAAGCATCGATTCTCATAACAA-TCTCC
57358 ATTCTTTTCAAGATTGGGAACCAAAAA
447 ATTCTTTTCAAGATTGGGAACCAAAAA
* * *
57385 CACATTCCCTTCATTAGGATATAAGACATTGATGCTTTGGTGT-GCAAGAAAAGCTTCTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * *
57449 ACCGTTTTTGATAGAAT-AAATGTGTGCCTC-TAAGATAAGGCAATCATGAATACTCATACTAAT
66 ACCGTTTTTGATAGAATCAAA-GTTTGTCTCTTAA-ATAAGACAAACATGAATACTCATACTAAT
* * *
57512 -CCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTGTTCTCATTAGGATACAAGATATTGAT
129 CCCCT-TTC-TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAT
* ** * *
57576 GCTTTGGTTTTGCAA-ATAAGG-TTTTTTACAGTCAAATTTTTATAAAGTCTAAGTTCGTGCCTC
192 -CTTTGGTTTCGCAAGA-AAGGCTTTTTCCCA--CCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* * * **
57639 AAATGAAACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTG-AGATTAGGCACTATGAGTA
253 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTA-ATTAGGCACTATAAACA
* * * * *** * *
57703 CGTTATCCTCATTAGGATAACTGATATTAATGATTTTCTTCCACATGGAAATCTTTTCTTTGTCG
317 CATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * * * * *
57768 TA-TTTTCCTAAAATTAAAGTTCATCCCTGAAATAAGACAGGCACCGATTATCGTAACAATCTCC
382 TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCC
*
57832 ACTCTTTTCAAGATTGGGAACCAAAAA
447 ATTCTTTTCAAGATTGGGAACCAAAAA
* **
57859 CACATTCCCTTCATTAGGATACATCACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * *
57924 ACCGTTTTTTATTGAATCGAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATGCTAATCC
66 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * *
57989 CCATTT-TTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATACGCGATATTGATATT
131 CC-TTTCTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAT-CT
* * * * * *
58053 TTGGTTTCGTACGAAAGGCATTTTTCCTACCAATTTTTATAAAGTCTAAGTTCGTGCGTCAAATA
194 TTGGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * * *
58118 AGACAAACTTAGATTCTAGTAATGATCTTCATTCA-TTTGCTAATTAGGCACTACAATCACATTC
258 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG-TAATTAGGCACTATAAACACATTC
* *
58182 TCCTCATTAGGATAAGTGATATTGTTGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTT
322 TCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * * * * * * * *
58247 TCCAT-AAATGAAAGTTCATCCCTTAAATAGGAAAAGCATCGATTTTCAAAATAGTCTCCATTAT
387 TTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCT
* *
58311 TTTCAAGATTAGGAACCTAAAA
452 TTTCAAGATTGGGAACCAAAAA
* * * * * * * *
58333 CACATTTCATTCATTAAGATACATGACATTAATGCTTTGGTATCACAAGAAATGCTTTTCTTTTC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * *
58398 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATATTCATACT-ATTC
66 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* *
58462 CCTGTTCTATTCAGGATTCA-GCACCATAAATATAGT-TTCCTCATTAGGATACACGATATTGGC
131 CCT-TTCT-TTCAGGATT-AGGCACCATAAACATAGTCTT-CTCATTAGGATACACGATATT-GA
* * * *** * * *
58525 GCTTTGATTTTGTTGGAAAGGCTTTTTTCCCACCAATTTTCGTAAAGTCTAAGTTCATCCCTCAA
191 TCTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * * *
58590 TTGAGACAAACAAGGATTCTAGTAATGATCTTCTTTCATTTTGTTATTAGGCACTATAAACACAT
255 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACAT
* * * *
58655 TC-CTTTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG-TCTG
320 TCTC-CTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-
* * * * *
58718 A-TTTTCTTTAATATCAAAGTTC-GCCGTTTAAATAAGACAAGCATTGATTCTCATAACGATC-C
383 ATTTTTC-TTAAAATCAAAGTTCATCC-CTTAAATAAGACAAGCATCGATTCTCATAACAATCTC
*
58780 TCATTCTTTGCAAGATTGGGAACCAAAAA
446 -CATTCTTTTCAAGATTGGGAACCAAAAA
* * * * * *
58809 CACATTCCCTTTATTAGGATACAAGTCTTTGATGCTTTGGTGTAGGAAGAAAAGCTTTTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * *
58874 ACCGTTTTTGATAGAATCAATGTTTGTCACTTAAATAAGGCAAACATGAATACTCATTCTAATCC
66 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * *
58939 CCATTCTTTGC-GAGATTAGGCACCAT-AACATAGTGTTCTCATTAGGATACATGATATTGATGC
131 CCTTTCTTT-CAG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAT-C
* * * *
59002 TTT-G-TTCTCATTG---GG----GT---A-C-A----TGTAAAGTCTAAGTTCGTGCCTTAAAT
193 TTTGGTTTCGCA-AGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * *
59049 -CGACAAACATGGACTCTAGTAATGATCTTCATTCATTTT-AAGATTAGACACTATAAACACATT
257 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTA-ATTAGGCACTATAAACACATT
* * * * ** *
59112 CTCCACTTTAGGATAA-TGATTTTGATGA-TTTCACTTTGCACAGAAATATTTTCTTTGCCCTA-
321 CTCCTCATTAGGATAAGTGATATTGATGATTTTC-TTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * * * * **
59174 TTTTCCTAAAATCAAAGTACATACCTTAAATAAAAAAAGCATCGATTCTCGTAACTGTCTCCATT
385 TTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATT
*
59239 CTTTTCAAGATTGGGAACCTAAAA
450 CTTTTCAAGATTGGGAACCAAAAA
* * * * * * *
59263 CACATTCCCTTTAATAGGATACATGAAATCGATCCTGTGGTGTAGCAAGAAAAGCTTTTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * *
59328 ACCGTTTTTGATATAATCAAAGTTTGTCTTTTAAATAA-AGCAAACATTAATACTCATACTAAT-
66 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA-CAAACATGAATACTCATACTAATC
* * * * ** *
59391 CCCTATTCTTTTCAAGACTAGG-ATCCGA-AAACACATTCCCTTCT--TTAGGATACAAAACATT
130 CCCT-TTC-TTTCAGGATTAGGCA-CC-ATAAACATAGT--CTTCTCATTAGGATACACGATATT
* * * * * * * * * * *
59452 AAAGCTTTGGTGTCGTAAAAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAA-TCAAAGTT-TTT
189 -GATCTTTGGTTTCGCAAGAAAGGC-TTT-TTCCCACCAATTTTTG-TA-AAGTCTAAGTTCGTG
* ** * * * * * *
59514 CTCTTAAAAAAGATAAACATGAATACTCA-TACTAAT-TGCCATTC-TTTT-TAAGATTAGGCAC
249 C-CTCAAATGAGACAAACATGGATTCT-AGTAATGATCT-TCATTCATTTTGT-A-ATTAGGCAC
* * * * * ** * * *
59575 CATAAACATAGTC-CTCTCATTAGGATACA-TGACATTGATGCTTTGGTTTCGCA-AGAAAGGCT
309 TATAAACACATTCTC-CTCATTAGGATA-AGTGATATTGATGATTTTCTTTTGCATGGAAA-TCT
* * * * * * * ** ** *
59637 TTT-TCCT-CACC-AGTTTTT-GTAAAGTCTAAGTTCGTGCCTAAAATGGGACAAAAATGGATTC
371 TTTCT-TTGC-CCTA-TTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
** ** * * * *
59698 T-AGTAATGATCAT-CATTCATTTTGTA-ATTAGGCACTATAAA
433 TCA-TAACAATC-TCCATTC-TTTTCAAGATTGGGAACCAAAAA
** * * * ** * * * * *
59739 CACATTCTTTTCATTAGGATA-AGTGATATTGTTGATTTTCCT-TTGCATGGAAATCTTTTTTTT
1 CACATTCCCTTCATTAGGATACA-TGACATTGATG-CTTTGGTGTCGCAAGAAAAGCTTTTCTTT
** ** ** * * * * *
59802 GCC-CTATTTTTCTTA-ACATCATTGTTTATCCCTTAAATAAGAAAAACGTTG-ATTCTCATAAC
64 -CCACCGTTTTTGATAGA-ATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAATACTCAT-AC
* * * * * * * * * * *
59864 -AGTCTCCATTAT-TTTCATGATTGGGAACTTAAAAGACAT-TTCCT-TAATTAGGATTACAAGA
125 TAATC-CCCTT-TCTTTCAGGATTAGGCAC-CATAA-ACATAGTCTTCTCATTAGGA-TACACGA
* * * * * *
59925 CAATT-ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-GTTTTTAATAGAA-TC-ATAG
185 -TATTGAT-CTTTGGTTTCGCAAGAAAGGC-TTT-TTCCCACCAATTTTT-GTA-AAGTCTA-AG
** * * * * * * * * ** **
59986 TTTAT-CTCTTAAATAAGACAAACATGAATACTCA-TACTAATC-CCTTTTTTTTTCAAGATTAG
243 TTCGTGC-CTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGTA-ATTAG
* * * * * * ** *
60048 GCACCATAAACATAGTCTTCTCATTAGGATACACT-ATATT-AGTGCTTTGGTTTTGCA-AGAAA
305 GCACTATAAACACATTCTCCTCATTAGGATA-AGTGATATTGA-TGATTTTCTTTTGCATGGAAA
** * * * * ** * * * * * *
60110 GGTTTT-TTTCCCACCAATTTTT-GTAAAGT-TTAGCTTCATTCCTCAATTGAGACAAACATGGA
368 TCTTTTCTTT-GC-CCTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAGCATCGA
* *** * * ** * * * *
60172 TTCTCGTATTGATCTTCAATCATTTT-TTGATTAGGCACTATAAA
430 TTCTCATAACAATCTCCATTC-TTTTCAAGATTGGGAACCAAAAA
* * * * ** * * * * * *
60216 CACGTTCTCC-TCATTAGGATA-ATTGATATTAATGATTTTCTTTTGCATGGAAATCTTTACTTT
1 CACATTC-CCTTCATTAGGATACA-TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * ** * * * * * * *
60279 --GCCTTATTTTCCTTAAAATCAAAGTTTATCTCTTAAA-AAAACAAGCATCAATTCCCATAAAT
64 CCACCGT-TTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT--A-
* ** * * * * ** * * * *
60341 ATAAAAAAAGATAAACATAAATACTCATACTA--ATT-GCCATTCTTTTTAAGATTAGGC-AC-C
124 CT------A-AT-CCCCT---T--TCTTTC-AGGATTAGGCA--C-CATAAACA-TAGTCTTCTC
* ** * ** *
60401 ATAAACATACTCCTCTCATTAGGATACATGACATTGATGCTTTGGTTTAACAAGAAAGGCTTTTT
171 ATTAGGATAC-ACGAT-ATT--GAT-C-T----TTG--G-TTTCG-----CAAGAAAGGCTTTTT
* * * * *
60466 CCTCACCAGTTTTTGTAAA-TCCTAAGTTTGTACCTCAAATGGGACAAAAATGGATTCTAGTAAT
218 CC-CACCAATTTTTGTAAAGT-CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* **
60530 GATCATCATTCATTTTGTAATTAGGCACTATAAACACATTCTTTTCATTAGGATAAGTGATATTG
281 GATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAGTGATATTG
* * * * * * ** *
60595 TTGATTTTCCTTTGCATGGAAATCTTTTTTTTTGTCCAATTTTTCTTAACATCATTGTTTATCCC
346 ATGATTTTCTTTTGCATGGAAATC-TTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCC
* * * * * * **
60660 TTTAAATAAGAAAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCAGGAATGGGAACTTAAAA
410 -TTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAACCAAAAA
* * * * *
60725 GACATTTCCTTAATTAGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGCAAAGCTTTTCTTT
1 CACATTCCCTTCATTAGGA-TACATGAC-ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * *
60789 CCACCGTTTTTAATAGAATCACAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAAT
64 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT
*
60854 CCCCTTTCTTTTTCAGGATTAGGCATCATAAACATAGTCTTCTCATTAGGATACACGATATT-AG
129 CCCCTTTC--TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGA-
* * * * **
60918 TGCTTTGGTTTTGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTAAAGT-TTAGCTTCATTACTC
191 T-CTTTGGTTTCGCAAGAAAGG-CTTTTTCCCACCAATTTTTGTAAAGTCTAAG-TTCGTGCCTC
* * * *
60982 AATTGAGACAAACATGGATTCTCATGT--TGATCTTCAGTCATTTTTTGATTAGGCACTATAAAC
253 AAATGAGACAAACATGGATTCT-A-GTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAAC
* * * * * *
61045 ACATTCTTCTCATTAGGATAATTGATATTAATGATTTTCTTTCGCATGAAAATCTTTACTTTGCC
316 ACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * * * * * *
61110 TTATTTTCCTTAAAATCAAAGTTTATCTCTTAAA-AAAACAAGCATCAATTCCCATAACAGTCTC
381 CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTC
**
61174 CATTCTTTTCAAGATTTGGG-ACCCTAAA
446 CATTCTTTTCAAGA-TTGGGAACCAAAAA
* * * * * *
61202 CACATTCCCTTTAATAGGATACATGACATCGATTCTTTGGTGTAGCAAGAAAAGCTTTTATTTCC
1 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * *
61267 GCCGTTTTTGATATAATCAAAGTTTGTCTTTTAAATAA-AGCAAACATTAATACTCATACTAAT-
66 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA-CAAACATGAATACTCATACTAATC
61330 CCCTATTCTTT
130 CCCT-TTCTTT
61341 TCAAGACTGG
Statistics
Matches: 4670, Mismatches: 920, Indels: 530
0.76 0.15 0.09
Matches are distributed among these distances:
453 4 0.00
454 193 0.04
455 67 0.01
456 70 0.01
457 30 0.01
459 1 0.00
461 1 0.00
462 1 0.00
463 1 0.00
465 1 0.00
466 1 0.00
468 1 0.00
469 1 0.00
470 7 0.00
471 15 0.00
472 275 0.06
473 236 0.05
474 1133 0.24
475 660 0.14
476 576 0.12
477 574 0.12
478 256 0.05
479 43 0.01
480 128 0.03
481 9 0.00
482 2 0.00
485 5 0.00
486 5 0.00
488 3 0.00
489 3 0.00
490 9 0.00
491 14 0.00
492 4 0.00
493 2 0.00
494 3 0.00
495 10 0.00
496 8 0.00
497 11 0.00
498 3 0.00
499 6 0.00
500 2 0.00
501 3 0.00
502 4 0.00
505 9 0.00
506 89 0.02
507 38 0.01
508 21 0.00
509 57 0.01
510 49 0.01
511 23 0.00
512 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (473 bp):
CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
CCTTTCTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATCTTT
GGTTTCGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA
CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCT
CATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCT
TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTC
AAGATTGGGAACCAAAAA
Found at i:63784 original size:475 final size:475
Alignment explanation
Indices: 61995--64273 Score: 2436
Period size: 475 Copynumber: 4.8 Consensus size: 475
61985 GATCTAGAAG
* ** * ** *
61995 CACATTCCCTTCTTTAGGATACAAAACATTAACGCTTTGGTGTCATAAGGAAAGCTTTTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * **
62060 ACCGTTTTTGATAGAATCAATGTTTTTCTCTTAAAAAAGATAAACATGAATACTCATACTAATTG
66 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * *
62125 CCATTCTTTTTAAGATTAGGCACCATAAACATAGTCCTCTCATTAGGATACATGACATTGATGCT
131 CCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGACATTGATGCT
* * *
62190 TTGGTTTAGCAAGAAAGGCTTTTTCCTCACCAGTTTTTGTAAAGTCTAAGTTTGTGCCTTAAATA
196 TTGGTTTCGCAAGAAAGGCTTTTTCC-CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATA
* * *
62255 G-GACAAAAATGGATTTTAGTAATGATCATCATTCATTTTGTAATTAGGCGCTATAAACACATTC
260 GAGACAAAAATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTC
** * * *
62319 TTTTTATTAGGATAAGTGATATTGTTGATTTTCCTTTGCATGGAAATCTTTTTTTTGCCCTATTT
325 TCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATC-TTTTTTTGCCCTATTT
** ** * * * **
62384 TTCTTAATGTCATTGTTTATCCCTTAAATAAGAAAAACGTTGATTCTCATAACAGTCTCCATTAT
389 TTCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTCTCCATTAT
** * **
62449 TTTCAGGATTGGAAACTTAAAA
454 TTTCAAAATTGGGAACCAAAAA
* * * * * *
62471 GACATTTCCTTAATTAGGATTACAAGACAATT-ATGCTTTGGTGTCGCAAGAAATGCTTTTATTT
1 CACATTCCCTTCATTAGGA-TACATGAC-ATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * *
62535 CCACCATTTTTAATAGAATCACAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAAT
64 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT
* *
62600 CCCCTTTGTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT-AG
129 CCCCTTT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGACATTGA-
** * * **
62664 TGCTTTGGTTTCGCAAGAAATGTTTTTTTCCCACCAATTTTTGTAAAGT-TTAGCTTTATTACTC
192 TGCTTTGGTTTCGCAAGAAA-GGCTTTTTCCCACCAATTTTTGTAAAGTCTAAG-TTTGTGCCTC
* * * * * *
62728 -AATTGAGACAAACATGGATTCTCGTATTGATCTTCAGTCATTTTTTAATTAGGCACTATAAACA
255 AAATAGAGACAAAAATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACA
* * * *
62792 CATTCTCCTCATTAGGATAATTGATATTAATGATTTTCTTTTGCATGGAAATCTTTACTTTGCCT
320 CATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTT-TTTTGCCC
* * * * *
62857 TATTTTCCTTAAAATCAAAGTTTATCGCTTAAA-AAAACAAGCATCAATTCCCATAACAGTCTCT
384 TATTTTTCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTCTCC
* * *
62921 ATTCTTTTCAAGATTTGGG-ACCATAAA
449 ATTATTTTCAA-AATTGGGAACCAAAAA
** * * * * *
62948 CACATTTTCTTCTTTAGGATACATGGCATTGAA-GCTTTGGTGTTGTAAGAATAGCATTTT-TTT
1 CACATTCCCTTCATTAGGATACATGACATT-AATGCTTTGGTGTCGCAAGAAAAGC-TTTTCTTT
* *
63011 CCACCTTTTTTTGATAGAATCAAAGTTTTTCTCTTATAA-AAGAC--ACATGAATACTCATACTA
64 CCACC-ATTTTTGATAGAATCAAAGTTTGTCTCTTA-AATAAGACAAACATGAATACTCATACTA
* * ** * *
63073 ATCCCCATTCCTTTT-AGGATTAGGCACCATAAACATAGTTTTCTTTTTAGTATACACGACATTG
127 ATCCCC-TTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGACATTG
* * * *
63137 ATGCTTTGG-TTCGCAAGAAAGGTTTTTTCCCACCAAATTTTGTAAAGTCTAAGTTCGAGCCTCA
191 ATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
** * *
63201 AAT-GAGACAAAGGTGGATTCTAGTAATTATCTTCATTCATTTGGTAATTAGGCACTATAAACAC
256 AATAGAGACAAAAATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACAC
** * *
63265 ATTCTTTTCATTAGGATAAGTGATATCGATGATTTTCTTTTGCATGGAAATCTTGTTTTTGCCTT
321 ATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTT-TTTTTGCCCT
* * * * *
63330 ATTTTTCTTAAAATCAAAGTTTGTCTCTTAAATAAGACAAGCACCAATTCTCGTAACAATCTCCA
385 ATTTTTCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTCTCCA
*
63395 TTCTTTTCAAAATTGGGAACCAAAAA
450 TTATTTTCAAAATTGGGAACCAAAAA
* * * * *
63421 CGCATTCCCTTCATTAGGATGCATGGCATTAATGCTTTGGTATTGCAAGAAAAGCTTTTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* *
63486 ACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
66 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * * *
63551 CCTTTCTTTTCATGATTAGGCACTATAAACATAATCTTCTCTTTAGGATACGTGACATTGTTAT-
131 CCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGACATTG--ATG
*** * * *
63615 C-TTGGTTTCGGGTG-AAGAGCATTTTCCCACCAATTTTTCTAAAGTTTAAGTTTGTGCCTCAAA
194 CTTTGGTTTCGCAAGAAAG-GCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAA
* * * ** **
63678 TAG-GACAAAAATGGATTGTAGTTATGATCTTCATTCATTTTGTAATTAGGCACTACAGTCTTAT
258 TAGAGACAAAAATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACAT
* * * * *
63742 TCTCCTCCTTAAGATAAGTGATATTGTTGATTTTCTTTTGCATGTAAATCTTTTCTTCGCCCTAT
323 TCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTT-TTTGCCCTAT
* * * ** * * * * *
63807 TTTTCTTAAAATGAAGGTTCATCCCTTAAATAAGACAAGCATTGATTTTCGA-AATACTCTGCAA
387 TTTTCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCAATTCTC-ATAACAGTCTCCAT
** *
63871 TATTTTCAGGATTGGGAACCTAAAA
451 TATTTTCAAAATTGGGAACCAAAAA
* *
63896 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCC
1 CACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * *
63961 ACCATTTTTGATAGAGTCAAAGTTTGTCTCCTAAATAAGACAAATATAAATACTCATACTATTCC
66 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * * * * * *
64026 CCATTCTTTTCAGGATTAGGCACTATAAAAATAGTCTTCTTATTTGGATTCACGATATTGGA-GC
131 CCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGACATT-GATGC
* * * * * *
64090 ATTGATTTTGCAAGAAAGGCATTTTTCCCACC-ACTTTTGTAAGGT-TAAGTTCGTGCCTCAAAT
195 TTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT
* ** * * * * * *
64153 -GTGACAAACGTGGATTCTAGTAATGAGCCTCTTTCATTTTGTTATTGGGCACTATAAACACATC
259 AGAGACAAAAATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATT
* * * * *
64217 CCCCTCTTTAAGG-TAAATG--A-TGAAGATTTTCTTTTGCATGAAAATCTTTTATTTGCC
324 CTCCTCATT-AGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTT-TTTGCC
64274 TGATTTTCTG
Statistics
Matches: 1504, Mismatches: 258, Indels: 87
0.81 0.14 0.05
Matches are distributed among these distances:
471 34 0.02
472 215 0.14
473 121 0.08
474 201 0.13
475 436 0.29
476 66 0.04
477 194 0.13
478 229 0.15
479 8 0.01
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (475 bp):
CACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
CCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGACATTGATGCT
TTGGTTTCGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATAG
AGACAAAAATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCT
CCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTTTTGCCCTATTTTT
CTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTCTCCATTATTT
TCAAAATTGGGAACCAAAAA
Found at i:69312 original size:42 final size:42
Alignment explanation
Indices: 69257--69375 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
69247 TTCTTCTCTC
* *
69257 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
69299 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
69341 CTCCTCCTATCATCCCTCATCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
69376 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.09, C:0.45, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:69341 original size:18 final size:18
Alignment explanation
Indices: 69272--69342 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
69262 CCTGTCATCC
* *
69272 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
69290 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
69312 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
69332 CTCCTGTCTCT
1 CTCCTGTCTCT
69343 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:72576 original size:475 final size:476
Alignment explanation
Indices: 71682--75616 Score: 4206
Period size: 475 Copynumber: 8.3 Consensus size: 476
71672 ACTTAGGATA
*
71682 CACCATAAACATAGTCTTCTCATTAGGATACACGACATTGATGCTTTGGTTCCGCAAGAAAGGCT
1 CACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTCCGCAAGAAAGGCT
* * * ** * * *
71747 TTTTCCCGACCAATTTTTATAAAGTTTAAGTT-TGCACCTCAAAAGAGACAAATATTGATTCTAG
66 TTTTCCCCACCAATTTTTGTAAAGTCTAAGTTCTGTGCCTCAAATGAGACAAACATGGATTCTAG
** * ** *
71811 TAATGATCGCCATTCATTTTGTGATTAGGCACTATAAACACATGT-TTTTC-ATTAGGATAAGTG
131 TAATGATCTTCATTCATTTTGAGATTAGGCACTATAAACACAT-TCTCCTCTATTAGGATAAATG
* * * * *
71874 ATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCGTTGCCCTATTTTCCTGAAAATCATAGTTT
195 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* *
71939 ATCCTTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTATGCCA-TTTTC-AGAATTGGAAAC
260 ATCCTTTAAATAAGACAAGCATCGATTCTCGTAACAATC--T-CCATTTTTCAAG-ATTGGGAAC
* * * *
72002 GC-AAAACACATTTCCTTTATCAGGATACATGACATTGATGCTTTGGTGTTAG-AAGAAAAGCTT
321 -CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG-TCGCAAGAAAAGCTT
* * ** * * * *
72065 TTCTTTCCACCATTTTTGATAGAATCAAAATTTGTCTCTTATATACTAGAAACATGATTACTTAA
384 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
**
72130 ACTAGTCCCCATT-TTTTCGGGATTAGG
449 ACTAGTCCCCATTCTTTTCAAGATTAGG
* ** * * *
72157 CACCATAAACATAGTCTTCTCTTTAGGATATGCGATATTCACGATTTGGTTCCGCAAGAAAGGCT
1 CACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTCCGCAAGAAAGGCT
* * * * * * * * *
72222 TTCTGCCTATCAATTTTTGTAAAGTCTCAGTTCT-TACCACGAATGACACAAACATGGATTCTAG
66 TTTTCCCCACCAATTTTTGTAAAGTCTAAGTTCTGTGCCTCAAATGAGACAAACATGGATTCTAG
* * * *
72286 TAATGATCTTCATCCATTTTGAGATTAGGCATTATAAGCACATTCTCCTCTA-TAGGATAAGTGA
131 TAATGATCTTCATTCATTTTGAGATTAGGCACTATAAACACATTCTCCTCTATTAGGATAAATGA
* *
72350 TATTGATGATTTTCTTTTGCATGGAAATCTTTT-TTTGCCCTATTTTTCTTAAAATCAAAGTTTA
196 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * *
72414 TCCTTTAAATAAGACAAGCACCAATTCTCGCAACAATCTCCATTTCTTTCAAGATTGGGAACCAA
261 TCCTTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCA-TT-TTTCAAGATTGGGAACCAA
* * * *
72479 AAACACATTCCCTTCATTAGGATGCATGGCATTAATGCTTTGGTGTTGCAAGAAAAGCTTTTCTT
324 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* *
72544 TCCACCATTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTA
389 TCCACCA-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
* *
72609 ATCCCCTTTCTTTTCAAGATTAGG
453 GTCCCCATTCTTTTCAAGATTAGG
* * * ** * * **
72633 CACTATAAACATAGTCTTCTCTTTAGGACACGTGACATTGTTAT-C-TTGGTTTCGCGTG-AAGA
1 CACCATAAACATAGTCTTCTCATTAGGATACACGATATTG--ATGCTTTGGTTCCGCAAGAAAG-
* * * *
72695 GCATTTT-CCCACCAATTTTTCTAAAGTTTAAGTT-TGTGCCTCAAAT-AGGACAAAAATGGATT
63 GCTTTTTCCCCACCAATTTTTGTAAAGTCTAAGTTCTGTGCCTCAAATGA-GACAAACATGGATT
* * * * * ** * * *
72757 GTAGTTATTATCTTCATTCATTTTGTA-ATTTGGCACTACAGTCACATTCTCCTC-CTTAAGATG
127 CTAGTAATGATCTTCATTCATTTTG-AGATTAGGCACTATAAACACATTCTCCTCTATTAGGATA
* * * * * * *
72820 AGTGATATTGTTGATTTTCTTTTGCATGTAAATCTTTTCTTCGCCCTATTTCCCTTAAAATGAAG
191 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* * * * * * *
72885 GTTCATCCCTTAAATAAGACAAGCATCGATTTTCGAAATACTCTGCAATATTTTCAGGATTGGGA
256 GTTCATCCTTTAAATAAGACAAGCATCGATTCTCGTAACAATCT-CCAT-TTTTCAAGATTGGGA
* *
72950 ACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTT
319 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* *
73015 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATATTCAT
384 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
* *
73080 ACTATTCCCCATTCTTTTCAGGATTAGG
449 ACTAGTCCCCATTCTTTTCAAGATTAGG
* * * * **
73108 CACCATAAAAATAGTCTTCTCATTTGGATTCACGATATTGGA-GCTTTGATTTTGCAAGAAAGGC
1 CACCATAAACATAGTCTTCTCATTAGGATACACGATATT-GATGCTTTGGTTCCGCAAGAAAGGC
* * * * * *
73172 ATTTTT-TCCACC-ACTTCTGTAAGGT-TAAGTTC-GTGCCTCAAATGTGACAAACGTGGATTCT
65 -TTTTTCCCCACCAATTTTTGTAAAGTCTAAGTTCTGTGCCTCAAATGAGACAAACATGGATTCT
* ** *
73233 AGTAATG-TGCTTCTTTCATTTTGTTATT-GGACACTATAAACACATTCCCCTCT-TTAGGGA-A
129 AGTAATGAT-CTTCATTCATTTTGAGATTAGG-CACTATAAACACATTCTCCTCTATTA-GGATA
* * * *
73294 AATGATGTTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCGATTTTCCTTAAGATCAAA
191 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
*** * * ** * *
73359 GTTTGCCCTTTGAATAAGACAAGCATCGATTGTTATAA-AAGTCCCCTTTCTTTTCAAGATTGGG
256 GTTCATCCTTTAAATAAGACAAGCATCGATTCTCGTAACAA-TCTCC-AT-TTTTCAAGATTGGG
* *
73423 AACCAAAAACACATTCCCTTCATTAGGATATAAGACATTGATGCTTTGGTGT-GCAAGAAAAGCT
318 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * * * *
73487 TCTCTTTCCACCGTTTTTGATAGAATCAATGTGTGCCTC-TAAGATAAGGCAATCATGAATACTC
383 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA-ATAAGACAAACATGAATACTC
* *
73551 ATACTAATCCCTATTCTTTTCAAGATTAGG
447 ATACTAGTCCCCATTCTTTTCAAGATTAGG
* * ** *
73581 CACCATAAACATAGTGTTCTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAA-ATAAGGT
1 CACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTCCGCAAGA-AAGGC
* ** * *
73645 TTTTTACCCTTCAATTTTTGTAAAGTCTAAGTTC-GTGCCTCAAATAAGATAAACATGGATTCTA
65 TTTTTCCCCACCAATTTTTGTAAAGTCTAAGTTCTGTGCCTCAAATGAGACAAACATGGATTCTA
* ** *
73709 GTAATGATCTTCTTTCATTTTGAGATTAGGCACTATAAGTACATTATCCTC-ATTAGGATAAATG
130 GTAATGATCTTCATTCATTTTGAGATTAGGCACTATAAACACATTCTCCTCTATTAGGATAAATG
* *** *
73773 ATATTAATGATTTTCTTCCACATGGAAATCTTTTCTTTGCCGTATTTTCC-TAAAATCAAAGTTC
195 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
** * * * * * *
73837 ATCCCATAAATAAGACAAGCATCGATTTTTGTAACAATCTGCATTCTTTTAAAGATTAGGAACCT
260 ATCCTTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCA-T-TTTTCAAGATTGGGAACCA
* * * * * *
73902 AAAGCACATTCCCTTCATTAGGATACTTGACATTGATGTTTTCGTGTCACAAGAAAAGGTTTTCT
323 AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * * *
73967 CTCCACTATTTTTGATAGAATAAAAGTTTGTCTCTTAAATAAAACAAACATTAATACTTATACT-
388 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
* *
74031 GATCCCCTTTCTTTTCAGGATTAGG
453 G-TCCCCATTCTTTTCAAGATTAGG
** * * * * * * * *
74056 CAGTATAAACGTAGTCTTCGCATAAGAATACACAATACTGATGCTTTGGTTCTGCAAGAAAGGAT
1 CACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTCCGCAAGAAAGGCT
*** * * * *
74121 TTTGT-CCCACCAATTAACGTAAATTCTAAG-TCTGTGCCTTAAAGGAGCCAAACATGGATTCTA
66 TTT-TCCCCACCAATTTTTGTAAAGTCTAAGTTCTGTGCCTCAAATGAGACAAACATGGATTCTA
* ** *
74184 GTATTGATCTTCATTCATTTTTTGATTAGGCAGTATAAACACATTCTCCTC-ATTAGGATAAATG
130 GTAATGATCTTCATTCATTTTGAGATTAGGCACTATAAACACATTCTCCTCTATTAGGATAAATG
* * *
74248 ATATTGATGATTTTCTTTTGCATGGAAATCTTTACTTTGCCCTAATTTCCTTAAAATAAAAGTTC
195 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * *
74313 AGCCCTTAAA-AAGACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCA
260 ATCCTTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCA-T-TTTTCAAGATTGGGAACCA
* ** * *
74377 AAAACGCATTCCCTTTTTTAGGATACATGACATTGAAGCTTTGGTGTCTCAAGAAAAGCTTTTCC
323 AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-C
**
74442 TTT-CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACAAATACTCATACT
387 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* *
74506 AGTCCCCACTCTTTTTAAGATTAGG
452 AGTCCCCATTCTTTTCAAGATTAGG
*
74531 CACCATAAACATAGTCTTCTCATTAGGATACACGACATTGATGCTTTGGTTCCGCAAGAAAGGCT
1 CACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTCCGCAAGAAAGGCT
* * * * *
74596 TTTTCCCGACCAA-TTTTATAAAGTTTAAGTT-TGCGCCTCAAATGAGACAAATATTGG-TTCTA
66 TTTTCCCCACCAATTTTTGTAAAGTCTAAGTTCTGTGCCTCAAATGAGACAAACA-TGGATTCTA
* * ** * ** *
74658 GTAATGATCGTCATTCATTTTGTGATTAGGCACTATAAACACATT-TTTTTTATTAATATAAGT-
130 GTAATGATCTTCATTCATTTTGAGATTAGGCACTATAAACACATTCTCCTCTATTAGGATAAATG
* * * * * *
74721 A-ATAGGTGATTTTCTTTTGCATGGAAATCTTTTCGTTGCCCTATTTTCCTGAAAATCATAGTTT
195 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * *
74785 ATCCTTTAAGTAAGACAAGCATCGATTCTCATAACAGTCTATGCCA-TTTTC-AGAATTGGAAAC
260 ATCCTTTAAATAAGACAAGCATCGATTCTCGTAACAATC--T-CCATTTTTCAAG-ATTGGGAAC
* * * * *
74848 GC-AAAACACATTCCCTTTATCAAGATACAAGACATTGATACTTTGGTGTCGCAAGAAAAGCTTT
321 -CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * * ** * * * * *
74912 TCTTTCCACCATCTTTGATAGAATCAAAATTTGTCTCTTATATACTAGAAACGTGATTACTTAAA
385 TCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA
* **
74977 CCAGTCCCCATT-TTTTCGGGATTAGG
450 CTAGTCCCCATTCTTTTCAAGATTAGG
** *
75003 CACCATAAACATAGTCTTCTC-TTGAGGATATGCGATATTGATGATTTGGTTCCGCAAGAAAGGC
1 CACCATAAACATAGTCTTCTCATT-AGGATACACGATATTGATGCTTTGGTTCCGCAAGAAAGGC
* * * * *
75067 TTTCTACCTACCAATTTTTGTAAAGTCTAAGTTCT-TACCTCAAATGACACAAACATGGATTCTA
65 TTTTTCCCCACCAATTTTTGTAAAGTCTAAGTTCTGTGCCTCAAATGAGACAAACATGGATTCTA
* * * ***
75131 GTAAAGATCTTCATTCATTTTGAGATTAGGCATTATAAGCGTGTTCTCCTCT-TTAGGATAAATG
130 GTAATGATCTTCATTCATTTTGAGATTAGGCACTATAAACACATTCTCCTCTATTAGGATAAATG
* * * **
75195 ATATTGATGATTTTCTTTTGCAAGGATATCTTTCCTTTGCCCTATTTT-CTTAAAATCAGGGTTC
195 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * ** * *
75259 AGACC-TTAAATAAGACAAGCATTGATTCTCAAAACAGA-CTCCATTATTTTCAAGATTAGGAAT
260 A-TCCTTTAAATAAGACAAGCATCGATTCTCGTAACA-ATCTCCA-T-TTTTCAAGATTGGGAAC
* * *
75322 CTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGCAAAGCTTTT
321 CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
** * * * * *
75387 CTCACCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAAATAAACATTAGTACTCATAC
386 CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
* *
75452 TAATCCCTATTCTTTTCAAGATTAGG
451 TAGTCCCCATTCTTTTCAAGATTAGG
* * * **
75478 CACCATAAACATAGTCTTCTCATTAGGATACACAATATCGGTGCTTTGGTTTTGCAAGAAAGGCT
1 CACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTCCGCAAGAAAGGCT
* * *
75543 TTTTTCCCAGCAATTTTTGTAAAGTCTAAGTT-TGTGCCTCAAATGAGACAAACAAGGATTCTAG
66 TTTTCCCCACCAATTTTTGTAAAGTCTAAGTTCTGTGCCTCAAATGAGACAAACATGGATTCTAG
*
75607 TAGTGATCTT
131 TAATGATCTT
75617 TTTTGATTTT
Statistics
Matches: 2876, Mismatches: 500, Indels: 168
0.81 0.14 0.05
Matches are distributed among these distances:
471 8 0.00
472 162 0.06
473 390 0.14
474 735 0.26
475 1320 0.46
476 257 0.09
477 3 0.00
478 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (476 bp):
CACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTCCGCAAGAAAGGCT
TTTTCCCCACCAATTTTTGTAAAGTCTAAGTTCTGTGCCTCAAATGAGACAAACATGGATTCTAG
TAATGATCTTCATTCATTTTGAGATTAGGCACTATAAACACATTCTCCTCTATTAGGATAAATGA
TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
TCCTTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTTTTCAAGATTGGGAACCAAAA
ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAGTC
CCCATTCTTTTCAAGATTAGG
Found at i:76320 original size:34 final size:32
Alignment explanation
Indices: 76260--76322 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
76250 GCCAAACTTG
**
76260 TATCGATACACCAAGTATGTATCGATACAATC
1 TATCGATACACCAAAAATGTATCGATACAATC
76292 TATCGATACACCAAAAAATTGTATCGATACA
1 TATCGATACACC-AAAAA-TGTATCGATACA
76323 TTGGCTTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 12 0.44
33 3 0.11
34 12 0.44
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.27
Consensus pattern (32 bp):
TATCGATACACCAAAAATGTATCGATACAATC
Found at i:82678 original size:20 final size:20
Alignment explanation
Indices: 82635--82680 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
82625 AAATCTTTTG
82635 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
82656 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
82676 CAAAA
1 CAAAA
82681 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:85001 original size:20 final size:21
Alignment explanation
Indices: 84978--85032 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
84968 ACAATTCAAA
* *
84978 GTATCGATACATGTTACA-AT
1 GTATCGATACATGTAAAATAT
*
84998 GTATCGATACATGAAAAATAT
1 GTATCGATACATGTAAAATAT
85019 GTATCGATACATGT
1 GTATCGATACATGT
85033 CATTGGGATT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 15 0.50
21 15 0.50
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (21 bp):
GTATCGATACATGTAAAATAT
Found at i:406557 original size:33 final size:33
Alignment explanation
Indices: 406498--406578 Score: 108
Period size: 33 Copynumber: 2.4 Consensus size: 33
406488 TAACATTTTC
** *
406498 TTCAAAATCGACCCTCATTCAAGCAAATGACTTA
1 TTCAAAATCGA-CCTCATTCAAGCAAACAACTCA
* *
406532 TTTAAAATCGACCTCGTTCAAGCAAACAACTCA
1 TTCAAAATCGACCTCATTCAAGCAAACAACTCA
406565 TTCAAAATCGACCT
1 TTCAAAATCGACCT
406579 TTGAATCGTG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
33 31 0.76
34 10 0.24
ACGTcount: A:0.38, C:0.27, G:0.09, T:0.26
Consensus pattern (33 bp):
TTCAAAATCGACCTCATTCAAGCAAACAACTCA
Found at i:414100 original size:20 final size:20
Alignment explanation
Indices: 414075--414128 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
414065 GTTAGAAGCA
*
414075 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
414095 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
414115 ATGTATCGATACAA
1 ATGTATCGATACAA
414129 ACAATGGTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:414201 original size:19 final size:20
Alignment explanation
Indices: 414157--414204 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
414147 CTGCCAGTTT
**
414157 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
414177 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
414196 CATGTATCG
1 CATGTATCG
414205 TTACTTTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:414933 original size:33 final size:34
Alignment explanation
Indices: 414891--414954 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 34
414881 TAGCCAAACT
* **
414891 TGTATCGATACACTAACTA-TGTATCGATACCAA
1 TGTATCGATACACAAAAAATTGTATCGATACCAA
414924 TGTATCGATACACAAAAAATTGTATCGATAC
1 TGTATCGATACACAAAAAATTGTATCGATAC
414955 ATTGGCTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 16 0.59
34 11 0.41
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (34 bp):
TGTATCGATACACAAAAAATTGTATCGATACCAA
Found at i:421113 original size:13 final size:13
Alignment explanation
Indices: 421095--421159 Score: 112
Period size: 13 Copynumber: 5.0 Consensus size: 13
421085 ACATTTTTCT
421095 TTGTATCGATACA
1 TTGTATCGATACA
421108 TTGTATCGATACA
1 TTGTATCGATACA
*
421121 CTGTATCGATACA
1 TTGTATCGATACA
421134 TTGTATCGATACA
1 TTGTATCGATACA
*
421147 CTGTATCGATACA
1 TTGTATCGATACA
421160 GGGGGATTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 49 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:421132 original size:26 final size:26
Alignment explanation
Indices: 421096--421159 Score: 128
Period size: 26 Copynumber: 2.5 Consensus size: 26
421086 CATTTTTCTT
421096 TGTATCGATACATTGTATCGATACAC
1 TGTATCGATACATTGTATCGATACAC
421122 TGTATCGATACATTGTATCGATACAC
1 TGTATCGATACATTGTATCGATACAC
421148 TGTATCGATACA
1 TGTATCGATACA
421160 GGGGGATTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (26 bp):
TGTATCGATACATTGTATCGATACAC
Found at i:422317 original size:39 final size:40
Alignment explanation
Indices: 422262--422342 Score: 112
Period size: 39 Copynumber: 2.0 Consensus size: 40
422252 TTTAATAAAA
*
422262 GGGGAGAATGCGTGAATTTGCTAAAATTA-TCTT-ATTAAG
1 GGGGAGAATGCATGAATTTGCTAAAATTACT-TTGATTAAG
* *
422301 GGGGAGAATGTATGAATTTGTTAAAATTACTTTGATTAAG
1 GGGGAGAATGCATGAATTTGCTAAAATTACTTTGATTAAG
422341 GG
1 GG
422343 AGAAAGAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
39 28 0.76
40 9 0.24
ACGTcount: A:0.33, C:0.05, G:0.27, T:0.35
Consensus pattern (40 bp):
GGGGAGAATGCATGAATTTGCTAAAATTACTTTGATTAAG
Found at i:423005 original size:13 final size:13
Alignment explanation
Indices: 422987--423012 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
422977 TACACCAACT
422987 ATGTATCGATACA
1 ATGTATCGATACA
423000 ATGTATCGATACA
1 ATGTATCGATACA
423013 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:426016 original size:13 final size:13
Alignment explanation
Indices: 425996--426035 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
425986 ATAGTAACCC
425996 ACGTATCGATACA
1 ACGTATCGATACA
*
426009 ATGTATCGATACA
1 ACGTATCGATACA
*
426022 ACATATCGATACA
1 ACGTATCGATACA
426035 A
1 A
426036 GGAATATTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.25
Consensus pattern (13 bp):
ACGTATCGATACA
Found at i:426093 original size:20 final size:20
Alignment explanation
Indices: 426068--426105 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
426058 GGGTTTTTCA
426068 AATGTATCGATACATTCTTC
1 AATGTATCGATACATTCTTC
426088 AATGTATCGATACATTCT
1 AATGTATCGATACATTCT
426106 AGAAAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
AATGTATCGATACATTCTTC
Found at i:427295 original size:79 final size:78
Alignment explanation
Indices: 427164--427621 Score: 430
Period size: 79 Copynumber: 5.8 Consensus size: 78
427154 ACAACGTGGC
*
427164 TGGAGTATCCCTGATTAT-GAAAAATTGGTGTTTTGAAAATAAAATCGAGGTTGGAGTATCCCGT
1 TGGAGTATCCC-GATTATAGAAAAATCGGTGTTTTGAAAATAAAATCGAGGTTGGAGTATCCC-T
427228 CGAAAATAACAGGGT
64 CGAAAATAACAGGGT
* * * *
427243 TGGAGTATCCTCGATTATAG-AAAATTGGTGTTTTGAAAATAAATTCGAGGTTGGAGTATTGCTT
1 TGGAGTATCC-CGATTATAGAAAAATCGGTGTTTTGAAAATAAAATCGAGGTTGGAGTA-TCCCT
*
427307 CGAAAATAATAGGGT
64 CGAAAATAACAGGGT
* * *
427322 TAGAGTATCCCTGATTATAG-AAAATCGGTGTTTTGAAAATCAAATCGAGGTTAGAGTATCCCCT
1 TGGAGTATCCC-GATTATAGAAAAATCGGTGTTTTGAAAATAAAATCGAGGTTGGAGTAT-CCCT
427386 CGAAAATAACAGGGT
64 CGAAAATAACAGGGT
* * * *** *
427401 TGGAGTATCCCCGATTA-CGAAAAATCGATGCTTT-AGAAATAAGGCCTAGGGTTGGAGTATCCC
1 TGGAGTAT-CCCGATTATAGAAAAATCGGTGTTTTGA-AAATAAAATCGA-GGTTGGAGTATCCC
*
427464 TGCGAAAATAACGGGGT
63 T-CGAAAATAACAGGGT
* * ** * * **
427481 TGGAGTATCCTCGATTGT-GAAAAAACAATATTTTAAAAATAAAGCCG-GGATTGGAGTATCCC-
1 TGGAGTATCC-CGATTATAGAAAAATCGGTGTTTTGAAAATAAAATCGAGG-TTGGAGTATCCCT
*
427543 CGATGAAATAACAAGGT
64 CGA--AAATAACAGGGT
* * * * * *
427560 TGAAGTGTCCCCGATTGTA-AAAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCC
1 TGGAGTAT-CCCGATTATAGAAAAATCGGTGTTTTGAAAATAAAATCGAGGTTGGAGTATCCC
427622 CGATTGTGGA
Statistics
Matches: 317, Mismatches: 43, Indels: 38
0.80 0.11 0.10
Matches are distributed among these distances:
77 3 0.01
78 6 0.02
79 238 0.75
80 69 0.22
81 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (78 bp):
TGGAGTATCCCGATTATAGAAAAATCGGTGTTTTGAAAATAAAATCGAGGTTGGAGTATCCCTCG
AAAATAACAGGGT
Found at i:427622 original size:51 final size:51
Alignment explanation
Indices: 427556--427673 Score: 173
Period size: 51 Copynumber: 2.3 Consensus size: 51
427546 TGAAATAACA
* * *
427556 AGGTTGAAGTGTCCCCGATTGTAAAAAATTGGTGTTTTGGAAATAAAATCG
1 AGGTTGGAGTATCCCCGATTGTAAAAAATTGGTGTTTTAGAAATAAAATCG
* **
427607 GGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAATCG
1 AGGTTGGAGTATCCCCGATTGTAAAAAATTGGTGTTTTAGAAATAAAATCG
*
427658 AGGTTAGAGTATCCCC
1 AGGTTGGAGTATCCCC
427674 TCGAAAATAA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.31
Consensus pattern (51 bp):
AGGTTGGAGTATCCCCGATTGTAAAAAATTGGTGTTTTAGAAATAAAATCG
Found at i:427626 original size:130 final size:130
Alignment explanation
Indices: 427475--427754 Score: 350
Period size: 130 Copynumber: 2.2 Consensus size: 130
427465 GCGAAAATAA
* * *
427475 CGGGGTTGGAGTATCCTCGATTGTGAAAAAACAATATTTTAAAAATAAAGCCG-GGATTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAAACAATATTTTAAAAATAAAACCGAGG-TTAGAGTA
* * * * *
427539 T-CCC-CGATGAAATAACAAGGTTGAAGTGTCCCCGATTGTAAAAAATTGGTGTTTTGGAAATAA
65 TCCCCTCGA--AAATAACAAGATTGAAGTATCCCCGACTATAAAAAATTGATGTTTTGGAAATAA
427602 AAT
128 AAT
* **** * * *
427605 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAATCGAGGTTAGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAAACAATATTTTAAAAATAAAACCGAGGTTAGAGTAT
* *
427670 CCCCTCGAAAATAACGAGATTGAAGTATCCCCGACTATGAAAAATTGATGTTTTGGAAATAAAAT
66 CCCCTCGAAAATAACAAGATTGAAGTATCCCCGACTATAAAAAATTGATGTTTTGGAAATAAAAT
427735 CGGGGTTGGAGTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
427755 GATGAAAAAT
Statistics
Matches: 129, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
130 121 0.94
131 5 0.04
132 3 0.02
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.28
Consensus pattern (130 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAAACAATATTTTAAAAATAAAACCGAGGTTAGAGTAT
CCCCTCGAAAATAACAAGATTGAAGTATCCCCGACTATAAAAAATTGATGTTTTGGAAATAAAAT
Found at i:430101 original size:30 final size:30
Alignment explanation
Indices: 430065--430168 Score: 100
Period size: 30 Copynumber: 3.4 Consensus size: 30
430055 TACATTGAAA
430065 AATGTATCGATACATCTTGGTAAAACCCAG
1 AATGTATCGATACATCTTGGTAAAACCCAG
* * * * *** *
430095 AATGTATCGATATAATGTATCGATACAATAAAC
1 AATGTATCGATA-CATCT-T-GGTAAAACCCAG
*
430128 AATGTATCGATACATCTAGGTAAAACCCAG
1 AATGTATCGATACATCTTGGTAAAACCCAG
430158 AATGTATCGAT
1 AATGTATCGAT
430169 GCAACGAACA
Statistics
Matches: 54, Mismatches: 17, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
30 29 0.54
31 3 0.06
32 4 0.07
33 18 0.33
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.28
Consensus pattern (30 bp):
AATGTATCGATACATCTTGGTAAAACCCAG
Found at i:430113 original size:13 final size:13
Alignment explanation
Indices: 430095--430119 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
430085 TAAAACCCAG
430095 AATGTATCGATAT
1 AATGTATCGATAT
430108 AATGTATCGATA
1 AATGTATCGATA
430120 CAATAAACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
AATGTATCGATAT
Found at i:430144 original size:63 final size:63
Alignment explanation
Indices: 430045--430168 Score: 205
Period size: 63 Copynumber: 2.0 Consensus size: 63
430035 AAATTGCCTG
* *
430045 AATGTATCAATACATTGAAAAATGTATCGATACATCTTGGTAAAACCCAGAATGTATCGATAT
1 AATGTATCAATACAATGAAAAATGTATCGATACATCTAGGTAAAACCCAGAATGTATCGATAT
*
430108 AATGTATCGATACAAT-AAACAATGTATCGATACATCTAGGTAAAACCCAGAATGTATCGAT
1 AATGTATCAATACAATGAAA-AATGTATCGATACATCTAGGTAAAACCCAGAATGTATCGAT
430169 GCAACGAACA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
62 3 0.05
63 54 0.95
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (63 bp):
AATGTATCAATACAATGAAAAATGTATCGATACATCTAGGTAAAACCCAGAATGTATCGATAT
Found at i:430867 original size:83 final size:86
Alignment explanation
Indices: 430776--430997 Score: 242
Period size: 83 Copynumber: 2.6 Consensus size: 86
430766 TTTGAGGATT
* * *
430776 AAGGAAAAAGAG-AATGAAATGGGTCTTGTTCTTTGAGGACAAAGGATAAAAG-GAAATAAAATG
1 AAGGAAAAAGAGAAATGAAATGTGTCATGTTCTTTGAGGACAAAGGAAAAAAGAG-AATAAAATG
*
430839 CATCTTGCCCTTTGAAG-AC-A-
65 CATCCTGCCCTTT-AAGAACTAG
* *
430859 AAGGAAAAAG-GAAATTAAATGTGTCATGCTT-TTTGAGGACAAAGGAAAAAAGAGAATAAAGTG
1 AAGGAAAAAGAGAAATGAAATGTGTCATG-TTCTTTGAGGACAAAGGAAAAAAGAGAATAAAATG
* *
430922 CGTCCTGCTCTTTAAGAACTAG
65 CATCCTGCCCTTTAAGAACTAG
* * * *
430944 AAGGGAAAAGAAGGAAATGAAGTGTGTCCTGCTCTTTGAGGACAAAGGAAAAAA
1 AAGGAAAAAG-A-GAAATGAAATGTGTCATGTTCTTTGAGGACAAAGGAAAAAA
430998 TAAAGAAATG
Statistics
Matches: 116, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
82 4 0.03
83 63 0.54
84 4 0.03
85 9 0.08
87 1 0.01
88 35 0.30
ACGTcount: A:0.43, C:0.10, G:0.25, T:0.22
Consensus pattern (86 bp):
AAGGAAAAAGAGAAATGAAATGTGTCATGTTCTTTGAGGACAAAGGAAAAAAGAGAATAAAATGC
ATCCTGCCCTTTAAGAACTAG
Found at i:431018 original size:45 final size:44
Alignment explanation
Indices: 430758--431132 Score: 281
Period size: 45 Copynumber: 8.6 Consensus size: 44
430748 GAATGAGGCA
** * *
430758 TCCTGCTCTTTGAGGATTAAGGAAAAAG--AG-AATGAAATGGG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAGAAAGAAATGAAGTGCG
* * * * *
430799 TCTTGTTCTTTGAGGACAAAGGATAAAAG---GAAATAAAATGCA
1 TCCTGCTCTTTGAGGACAAAGGA-AAAAGAAAGAAATGAAGTGCG
* * * * * *
430841 TCTTGCCCTTTGAAGACAAAGGAAAAAG---GAAATTAAATGTG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAGAAAGAAATGAAGTGCG
* * * *
430882 TCATGCTTTTTGAGGACAAAGGAAAAA-AGAG-AATAAAGTGCG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAGAAAGAAATGAAGTGCG
* * * * *
430924 TCCTGCTCTTTAAGAACTAGAAGGGAAAAGAAGGAAATGAAGTGTG
1 TCCTGCTCTTTGAGGAC-A-AAGGAAAAAGAAAGAAATGAAGTGCG
*
430970 TCCTGCTCTTTGAGGACAAAGGAAAAAATAAAGAAATGAAGTGCG
1 TCCTGCTCTTTGAGGACAAAGG-AAAAAGAAAGAAATGAAGTGCG
* * *
431015 TCCTACTCTTTGAGGACAAAGGCAAAAAGAAAAAAATGAAG-GCA
1 TCCTGCTCTTTGAGGACAAAGG-AAAAAGAAAGAAATGAAGTGCG
* * * * * *
431059 TCCTACGCTTTGAGGACAAAAGGGAAAATG-AGGAAATGAAATGTG
1 TCCTGCTCTTTGAGGAC-AAA-GGAAAAAGAAAGAAATGAAGTGCG
431104 TCCTGCTCTTTGAGGACAAAGGAGAAAAG
1 TCCTGCTCTTTGAGGACAAAGGA-AAAAG
431133 GAAAAGGTGT
Statistics
Matches: 270, Mismatches: 50, Indels: 25
0.78 0.14 0.07
Matches are distributed among these distances:
41 58 0.21
42 54 0.20
43 5 0.02
44 45 0.17
45 82 0.30
46 26 0.10
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.22
Consensus pattern (44 bp):
TCCTGCTCTTTGAGGACAAAGGAAAAAGAAAGAAATGAAGTGCG
Found at i:431095 original size:89 final size:87
Alignment explanation
Indices: 430806--431137 Score: 259
Period size: 89 Copynumber: 3.8 Consensus size: 87
430796 GGGTCTTGTT
* * * * * *
430806 CTTTGAGGACAAAGGATAAAA-G-GAAATAAAATGCATCTTGCCCTTTGAAGACAAAGGAAAAAG
1 CTTTGAGGACAAAGGA-AAAATGAGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAGGAAAAA-
* * *
430869 GAAATTAAATG-TGT-CATGCT---
64 GAAA-AAAATGAAGTGCATCCTACG
* * * * * *
430889 TTTTGAGGACAAAGGAAAAAAGAG-AATAAAGTGCGTCCTGCTCTTTAAGAACTAGAAGGGAAAA
1 CTTTGAGGACAAAGGAAAAATGAGAAATGAAGTGCGTCCTGCTCTTTGAGGAC-A-AAGGAAAAA
** ** * *
430953 GAAGGAAATGAAGTGTGTCCTGCT
64 GAAAAAAATGAAGTGCATCCTACG
* *
430977 CTTTGAGGACAAAGGAAAAAATAAAGAAATGAAGTGCGTCCTACTCTTTGAGGACAAAGGCAAAA
1 CTTTGAGGACAAAGG-AAAAAT-GAGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAGG-AAAA
431042 AGAAAAAAATGAAG-GCATCCTACG
63 AGAAAAAAATGAAGTGCATCCTACG
* * *
431066 CTTTGAGGACAAAAGGGAAAATGAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAGGAGAAA
1 CTTTGAGGAC-AAAGGAAAAATGA-GAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAGGA-AAA
*
431131 AGGAAAA
63 AGAAAAA
431138 GGTGTCCTGA
Statistics
Matches: 198, Mismatches: 35, Indels: 26
0.76 0.14 0.10
Matches are distributed among these distances:
82 4 0.02
83 42 0.21
84 7 0.04
85 11 0.06
88 16 0.08
89 71 0.36
90 23 0.12
91 24 0.12
ACGTcount: A:0.43, C:0.12, G:0.25, T:0.20
Consensus pattern (87 bp):
CTTTGAGGACAAAGGAAAAATGAGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAGGAAAAAGA
AAAAAATGAAGTGCATCCTACG
Found at i:431206 original size:61 final size:61
Alignment explanation
Indices: 431128--431857 Score: 824
Period size: 61 Copynumber: 12.0 Consensus size: 61
431118 GACAAAGGAG
* * * * ** *
431128 AAAAGGAAAAGGTGTCCTGATCTTTGCGGACTGAAAAGTGCCACCAACTCATGTGAGCTTT
1 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
*
431189 AAAAA-AGAAAGGCGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAAGA-AAAGGCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * * *
431251 AAAAGGAAAAGGCATCCTGCTCCTTGAGGACT-AAGAGGTGCCACCAACTTGTGTAGGCTTT
1 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAA-AAGTGCCACCAACTTGTGTGGGCTTT
*
431312 AAAAAGAAAAAGGAGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAAG-AAAAGGCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
* * *
431375 AAAAGGAAAAGGCATCCTGCT-TCTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTT
1 AAAAAGAAAAGGCGTCCTGCTCT-TTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * *
431436 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGTCTTT
1 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT
* * *
431497 AAAAAGAAAAGACGTCTTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT
*
431558 -AAAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAAG-AAAAGGCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
* ** * * * *
431620 AAAAGGAAAAGGTATCCTACTCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTTGCCTTT
1 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * * * *
431681 AAAAGGAAAAGGCATCTTGCTAC-TTGAGGACTAAAAAGTGCCACTAATTTGTGTGGGCTTT
1 AAAAAGAAAAGGCGTCCTGCT-CTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * * * * *
431742 AAAAGGAAAATGTGTCCTACTCTTTGAAGACT-AGAAGGTGCCACCAACTAGTGTGGGCTTT
1 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT
* *
431803 ------AAAAGGCATCTTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTT
1 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
431858 GAAAGGCATC
Statistics
Matches: 582, Mismatches: 68, Indels: 44
0.84 0.10 0.06
Matches are distributed among these distances:
55 42 0.07
56 2 0.00
57 1 0.00
60 11 0.02
61 341 0.59
62 148 0.25
63 35 0.06
64 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.26
Consensus pattern (61 bp):
AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:431538 original size:122 final size:123
Alignment explanation
Indices: 431128--431863 Score: 921
Period size: 122 Copynumber: 6.0 Consensus size: 123
431118 GACAAAGGAG
** * *
431128 AAAAGGAAAAGGTGTCCTGATCTTTGCGGACTGAAAAGTGCCACCAACTCATGTG-A-GCTTTAA
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACT--TGTGTAGGCTTTAA
*
431191 AA-AAGAAAGGCGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
64 AAGAA-AAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
* *
431251 AAAAGGAAAAGGCATCCTGCTCCTTGAGGACT-AAGAGGTGCCACCAACTTGTGTAGGCTTTAAA
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAA-AAGTGCCACCAACTTGTGTAGGCTTT-AA
*
431315 AAGAAAAAGGAGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
64 AAGAAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
431375 AAAAGGAAAAGGCATCCTGCT-TCTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAA
1 AAAAGGAAAAGGCATCCTGCTCT-TTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAA
* * *
431439 AGGAAAAGGCGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGTCTTT
65 AGAAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * * * *
431497 AAAAAGAAAAGACGTCTTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTAAA
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTAGGCTTTAAA
*
431561 AGAAAAAGGTGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
65 AGAAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * * *
431620 AAAAGGAAAAGGTATCCTACTCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTTGCCTTTAAAA
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAA
* * * * *
431685 GGAAAAGGCATCTTGCTAC-TTGAGGACTA-AAAAGTGCCACTAATTTGTGTGGGCTTT
66 GAAAAAGGCGTCCTGCT-CTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
* ** * * * * *
431742 AAAAGGAAAATGTGTCCTACTCTTTGAAGACT-AGAAGGTGCCACCAACTAGTGTGGGCTTT---
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTAGGCTTTAAA
* *
431803 ---AAAAGGCATCTTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTT
65 AGAAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
*
431858 GAAAGG
1 AAAAGG
431864 CATCCTGCTC
Statistics
Matches: 547, Mismatches: 51, Indels: 37
0.86 0.08 0.06
Matches are distributed among these distances:
115 1 0.00
116 51 0.09
117 4 0.01
121 6 0.01
122 188 0.34
123 179 0.33
124 114 0.21
125 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (123 bp):
AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAA
GAAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:431629 original size:245 final size:244
Alignment explanation
Indices: 431128--431863 Score: 1012
Period size: 245 Copynumber: 3.0 Consensus size: 244
431118 GACAAAGGAG
* * *
431128 AAAAGGAAAAGGTGTCCTG-ATCTTTGCGGACTGAAAAGTGCCACCAACTCATGTG-A-GCTTTA
1 AAAAGGAAAAGGTATCCTGCTTC-TTGAGGACTGAAAAGTGCCACCAACT--TGTGTAGGCTTTA
* *
431190 AAA-AAGAAAGGCGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAA
63 AAAGGA-AAAGGCGTCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAAA
* * *
431254 AGGAAAAGGCATCCTGCTCCTTGAGGACTA-AGAGGTGCCACCAACTTGTGTAGGCTTTAAAAAG
126 AGGAAAA-GCGTCCTGCTCTTTGAGGACTAGA-AGGTGCCACCAACTTGTGTGGGCTTT-AAAAG
431318 AAAAAGGAGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
188 AAAAAGGAGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
*
431375 AAAAGGAAAAGGCATCCTGCTTCTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAA
1 AAAAGGAAAAGGTATCCTGCTTCTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAA
* * *
431440 GGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGTCTTTAAAAAGAA
66 GGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAA
*
431505 AAGACGTCTTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGG
131 AAG-CGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGG
*
431570 TGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
195 AGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
431620 AAAAGGAAAAGGTATCCTACTCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTTGCCTTTAAAA
1 AAAAGGAAAAGGTATCCTGCTTCTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAA
* * * * *
431685 GGAAAAGGCATCTTGCTAC-TTGAGGACTAAAAAGTGCCACTAATTTGTGTGGGCTTTAAAAGGA
66 GGAAAAGGCGTCCTGCT-CTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
* * * *
431749 AAATGTGTCCTACTCTTTGAAGACTAGAAGGTGCCACCAACTAGTGTGGGCTTTAAAAG-----G
130 AAA-GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* *
431809 CA-TCTTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTT
194 GAGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
*
431858 GAAAGG
1 AAAAGG
431864 CATCCTGCTC
Statistics
Matches: 445, Mismatches: 36, Indels: 25
0.88 0.07 0.05
Matches are distributed among these distances:
238 28 0.06
239 23 0.05
240 1 0.00
245 232 0.52
246 80 0.18
247 78 0.18
248 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (244 bp):
AAAAGGAAAAGGTATCCTGCTTCTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAA
GGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAA
AAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGA
GTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:432979 original size:12 final size:10
Alignment explanation
Indices: 432954--433022 Score: 52
Period size: 10 Copynumber: 6.8 Consensus size: 10
432944 CTTAAGCAGG
432954 TTCTTTTCTTT
1 TTCTTTT-TTT
*
432965 TCTCTATTTTT
1 T-TCTTTTTTT
432976 TTCTTTTTTT
1 TTCTTTTTTT
** *
432986 TTGGTTATTT
1 TTCTTTTTTT
*
432996 TT-TTGTTTT
1 TTCTTTTTTT
433005 TTCTTTTGTTT
1 TTCTTTT-TTT
433016 TT-TTTTT
1 TTCTTTTT
433023 AAAAAAAAGG
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
9 7 0.15
10 24 0.52
11 10 0.22
12 5 0.11
ACGTcount: A:0.03, C:0.09, G:0.06, T:0.83
Consensus pattern (10 bp):
TTCTTTTTTT
Found at i:432980 original size:22 final size:22
Alignment explanation
Indices: 432954--433022 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
432944 CTTAAGCAGG
432954 TTCTTTTCTTTT-CTCTATTTTT
1 TTCTTTTCTTTTGCT-TATTTTT
* *
432976 TTCTTTTTTTTTGGTTATTTTTT
1 TTCTTTTCTTTTGCTTA-TTTTT
* *
432999 TGTTTTTTCTTTTG-TTTTTTTT
1 T-TCTTTTCTTTTGCTTATTTTT
433021 TT
1 TT
433023 AAAAAAAAGG
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
21 1 0.03
22 19 0.49
23 9 0.23
24 10 0.26
ACGTcount: A:0.03, C:0.09, G:0.06, T:0.83
Consensus pattern (22 bp):
TTCTTTTCTTTTGCTTATTTTT
Found at i:443309 original size:4 final size:4
Alignment explanation
Indices: 443300--443326 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
443290 TAAAAAAACA
443300 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
443327 CACCTCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:445534 original size:79 final size:79
Alignment explanation
Indices: 445403--445806 Score: 361
Period size: 79 Copynumber: 5.1 Consensus size: 79
445393 AACGTGGCTA
* * * * * *
445403 GAGTATCCCTGATTATGGAAAATCGATGTTCTAAAAATAAAATC-GAGATTGGAGTATCCTCTCA
1 GAGTATCCTTGATTATAGAAAATCGATGTTTTGAAAATAAAATCAG-GGTTGGAGTATCCCCTCA
445467 AAAATAACAGGGTTG
65 AAAATAACAGGGTTG
* **
445482 GAGTATCCTTGATTATAGAAAATCGGTGTTTTGAAAATAAAATCAGGGTTGGAGTATCCCCTCGG
1 GAGTATCCTTGATTATAGAAAATCGATGTTTTGAAAATAAAATCAGGGTTGGAGTATCCCCTCAA
*
445547 AAATAAGAGGGTTG
66 AAATAACAGGGTTG
* * * *
445561 GAGTATCCCTGATTATAGAAAAT-TAGTGTTTTGAAAATAAAATCAGGGTTAGAGTATCCCCTCG
1 GAGTATCCTTGATTATAGAAAATCGA-TGTTTTGAAAATAAAATCAGGGTTGGAGTATCCCCTCA
*
445625 AAAATAATAGGGTTG
65 AAAATAACAGGGTTG
* * * *** * * *
445640 GAGTATCCTCGATTA-CGAAAAATCGATGCTTT-AGAAATAAGGCCCGGGGTTGGAGTATCCTCG
1 GAGTATCCTTGATTATAG-AAAATCGATGTTTTGA-AAATAA-AATCAGGGTTGGAGTATCCCCT
* *
445703 CAAAAATAACGGGGTTA
63 CAAAAATAACAGGGTTG
* * * * * ** *
445720 GAGTATCCTCGATTGTGAGAAAA-CAATATTCT-AGAAATAAAGCCGGGGTTGGAGTATCCCCTC
1 GAGTATCCTTGATTAT-AGAAAATCGATGTTTTGA-AAATAAAATCAGGGTTGGAGTATCCCCTC
** * *
445783 GGAAATAGCGGGGTTG
64 AAAAATAACAGGGTTG
445799 GAGTATCC
1 GAGTATCC
445807 CCGATGAAAT
Statistics
Matches: 271, Mismatches: 46, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
78 2 0.01
79 207 0.76
80 57 0.21
81 4 0.01
82 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (79 bp):
GAGTATCCTTGATTATAGAAAATCGATGTTTTGAAAATAAAATCAGGGTTGGAGTATCCCCTCAA
AAATAACAGGGTTG
Found at i:445796 original size:28 final size:28
Alignment explanation
Indices: 445763--445838 Score: 98
Period size: 28 Copynumber: 2.7 Consensus size: 28
445753 GAAATAAAGC
** *
445763 CGGGGTTGGAGTATCCCCTCGGAAATAG
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
445791 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
* *
445819 CAGGGTTGGATTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
445839 TCGTAAAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:445885 original size:51 final size:51
Alignment explanation
Indices: 445821--445938 Score: 146
Period size: 51 Copynumber: 2.3 Consensus size: 51
445811 TGAAATAACA
* * ** **
445821 GGGTTGGATTATCCCCGATCGTAAAAAATTGATGTTTTGGAAATAAAATTG
1 GGGTTGGAGTATCCCCGATCATAAAAAATTGATGTTTTAAAAATAAAACCG
* * * *
445872 GGGTTGGAGTATCCCCGATTATGAAAAATTGGTTTTTTAAAAATAAAACCG
1 GGGTTGGAGTATCCCCGATCATAAAAAATTGATGTTTTAAAAATAAAACCG
445923 GGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
445939 TCAGAAATAA
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCGATCATAAAAAATTGATGTTTTAAAAATAAAACCG
Found at i:445958 original size:79 final size:79
Alignment explanation
Indices: 445870--446017 Score: 215
Period size: 79 Copynumber: 1.9 Consensus size: 79
445860 GAAATAAAAT
* ** * * *
445870 TGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTTTTTTAAAAATAAAACCGGGGTTGGAGTAT
1 TGGGATTGGAGTATCCCCGATTATGAAAAATTAATGTTTTAAAAATAAAACCGAGGTTAGAGTAT
445935 CCCCTCAGAAATAA
66 CCCCTCAGAAATAA
* **
445949 TGGGATTGGAGTATCCCTGATTATGAAAAATTAATGTTTTGGAAATAAAACCGAGGTTAGAGTAT
1 TGGGATTGGAGTATCCCCGATTATGAAAAATTAATGTTTTAAAAATAAAACCGAGGTTAGAGTAT
446014 CCCC
66 CCCC
446018 GAGATGAAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
79 60 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.30
Consensus pattern (79 bp):
TGGGATTGGAGTATCCCCGATTATGAAAAATTAATGTTTTAAAAATAAAACCGAGGTTAGAGTAT
CCCCTCAGAAATAA
Found at i:446041 original size:130 final size:130
Alignment explanation
Indices: 445791--446041 Score: 301
Period size: 130 Copynumber: 1.9 Consensus size: 130
445781 TCGGAAATAG
* * * *
445791 CGGGGTTGGAGTATCCCCGATGAAATAACAGGGTTGGATTATCCCCGATCGTAAAAAATTGATGT
1 CGGGGTTGGAGTATCCCCCATGAAATAACAGGGTTGGAGTATCCCCGATCATAAAAAATTAATGT
** * * * * ***
445856 TTTGGAAATAAAATTGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTTTTTTAAAAATAAAAC
66 TTTGGAAATAAAACCGAGGTTAGAGTATCCCCGATGATGAAAAATTAGAAATTTAAAAATAAAAC
* * * *
445921 CGGGGTTGGAGTATCCCCTCA-GAAATAA-TGGGATTGGAGTATCCCTGATTATGAAAAATTAAT
1 CGGGGTTGGAGTATCCCC-CATGAAATAACAGGG-TTGGAGTATCCCCGATCATAAAAAATTAAT
445984 GTTTTGGAAATAAAACCGAGGTTAGAGTATCCCCGA-GATGAAAAATCTAGAAATTTAA
64 GTTTTGGAAATAAAACCGAGGTTAGAGTATCCCCGATGATGAAAAAT-TAGAAATTTAA
446042 CAAAAATACT
Statistics
Matches: 101, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
129 12 0.12
130 88 0.87
131 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.29
Consensus pattern (130 bp):
CGGGGTTGGAGTATCCCCCATGAAATAACAGGGTTGGAGTATCCCCGATCATAAAAAATTAATGT
TTTGGAAATAAAACCGAGGTTAGAGTATCCCCGATGATGAAAAATTAGAAATTTAAAAATAAAAC
Found at i:448298 original size:20 final size:20
Alignment explanation
Indices: 448273--448327 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
448263 AAAATGCCTG
*
448273 AATGTATTGATACATTAAAA
1 AATGTATTGATACAATAAAA
* * * *
448293 AATGTATCGATATAATGAAC
1 AATGTATTGATACAATAAAA
448313 AATGTATTGATACAA
1 AATGTATTGATACAA
448328 ATTGTGAAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.47, C:0.07, G:0.13, T:0.33
Consensus pattern (20 bp):
AATGTATTGATACAATAAAA
Found at i:451604 original size:13 final size:13
Alignment explanation
Indices: 451586--451611 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
451576 ACTATTTATG
451586 ATGTATCGATACA
1 ATGTATCGATACA
451599 ATGTATCGATACA
1 ATGTATCGATACA
451612 TGAATAGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:451801 original size:53 final size:53
Alignment explanation
Indices: 451737--451873 Score: 247
Period size: 53 Copynumber: 2.6 Consensus size: 53
451727 CTACTACTAA
451737 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
451790 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
451843 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
451874 TATGCAATTT
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 67 0.84
54 13 0.16
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:451906 original size:20 final size:20
Alignment explanation
Indices: 451843--451913 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
451833 GCCAATGTCC
**
451843 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
451863 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
451883 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
451903 TGTATCGATAC
1 TGTATCGATAC
451914 TTTTCAAGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:451979 original size:21 final size:21
Alignment explanation
Indices: 451953--451993 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
451943 GTCAACCTTG
451953 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
451974 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
451994 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:454626 original size:13 final size:13
Alignment explanation
Indices: 454608--454633 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
454598 TACACCAAGT
454608 ATGTATCGATACA
1 ATGTATCGATACA
454621 ATGTATCGATACA
1 ATGTATCGATACA
454634 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:454631 original size:32 final size:33
Alignment explanation
Indices: 454590--454653 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
454580 TAGCCAAACT
* **
454590 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
454622 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
454654 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:458722 original size:15 final size:15
Alignment explanation
Indices: 458702--458738 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
458692 TAAAAATGTC
*
458702 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
458717 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
*
458732 CCAAATG
1 CAAAATG
458739 TAATTGATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.49, C:0.16, G:0.22, T:0.14
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:460833 original size:13 final size:13
Alignment explanation
Indices: 460815--460852 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
460805 CATTTTTCTT
460815 TGTATCGATACAA
1 TGTATCGATACAA
*
460828 TGTATCGATACAC
1 TGTATCGATACAA
460841 TGTATCGATACA
1 TGTATCGATACA
460853 GGGTGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:461016 original size:20 final size:20
Alignment explanation
Indices: 460973--461018 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
460963 AAATCTTTTG
460973 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
460994 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
461014 CAAAA
1 CAAAA
461019 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:463419 original size:13 final size:13
Alignment explanation
Indices: 463401--463426 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
463391 TACACCAAGT
463401 ATGTATCGATACA
1 ATGTATCGATACA
463414 ATGTATCGATACA
1 ATGTATCGATACA
463427 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:463424 original size:32 final size:33
Alignment explanation
Indices: 463383--463446 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
463373 TAGCCAAACT
* **
463383 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
463415 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
463447 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:465812 original size:20 final size:20
Alignment explanation
Indices: 465787--465840 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
465777 GTTAGAAGCA
*
465787 ATGTATCAATACAAT-TCATC
1 ATGTATCAATACAATGT-ACC
* *
465807 ATGTATCGATATAATGTACC
1 ATGTATCAATACAATGTACC
*
465827 ATATATCAATACAA
1 ATGTATCAATACAA
465841 ACAGTGGTAG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (20 bp):
ATGTATCAATACAATGTACC
Found at i:465913 original size:19 final size:20
Alignment explanation
Indices: 465869--465922 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
465859 CTGCCAGTTT
**
465869 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
465889 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
465908 CATGTATCGATACAA
1 CATGTATCGATACAA
465923 AGTATCGATA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:465929 original size:13 final size:13
Alignment explanation
Indices: 465911--465937 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
465901 CAATGAACAT
465911 GTATCGATACAAA
1 GTATCGATACAAA
465924 GTATCGATACAAA
1 GTATCGATACAAA
465937 G
1 G
465938 CATAATGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.22
Consensus pattern (13 bp):
GTATCGATACAAA
Found at i:465951 original size:33 final size:32
Alignment explanation
Indices: 465892--465954 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 32
465882 AATTGTCCAT
*
465892 GTATCGATACAATGAACATGTATCGATACAAA
1 GTATCGATACAAAGAACATGTATCGATACAAA
465924 GTATCGATACAAAGCATA-ATGTATCGATACA
1 GTATCGATACAAAG-A-ACATGTATCGATACA
465955 TCTGGGTGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 13 0.46
33 14 0.50
34 1 0.04
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (32 bp):
GTATCGATACAAAGAACATGTATCGATACAAA
Found at i:468040 original size:589 final size:582
Alignment explanation
Indices: 466915--468068 Score: 1453
Period size: 589 Copynumber: 2.0 Consensus size: 582
466905 GAAAATCGAG
* * ** * *
466915 TTTTTAATATTTTTGAAAGTCAAAACATCTTTTGCACCTATTTGAAAGACTGGAAGACCATGAAG
1 TTTTTAATATCTTTGAAAGTCAAAACATCTTTTGCACCCATCCGAAAGACTAGAAGAACATGAAG
* * * *
466980 TTTTTTATCATTTTTTTTTTGTTTCATGCTAGAGAGCTAGAGGAATACAAAAAAGTTTCAAAAAA
66 TGTTTTATCA-TTCTTTTTTGTATCATGCTAGAAAGCTAGAGGAATACAAAAAAGTTTCAAAAAA
* * * * *
467045 TAAAAATATCTCTTGTACTCTATTGGATGAACGAAGAAATACAAAAGGTTTTATTTTATGAAATT
130 TAAAAATATCTCTTGTACCCCATTGGATGAACAAAGAAATACAAAAGGTTTTATTTTATAAAAAT
*
467110 TAAAAAATTCTCAATCTTCAATATCTTGTTATTAAAATAATCCGTAGAACCCCTCTCATTATTCT
195 TAAAAAATTCTCAATCTTCAATATCTTGTTATTAAAATAATCCGTAAAACCCCTCTCATTATTCT
** *
467175 GGGAAAAATTTTACGTATTATTTTAACTCAAAGACATTGCCGTGATTTTCTAAAAGTTCAAATTT
260 AAGAAAAATTTTACGTATTATTTTAACTCAAAGACATTGCCGTGATTTTCTAAAAATTCAAATTT
* * *
467240 TATTAAAAATATTTAAAAAAATTCCAAGAACTACAACGGTCTAAAATGAGGAACCTATTCCTAAA
325 TATTAAAAATATCTAAAAAAATTCCAAGAAATACAACGGACTAAAATGAGGAACCTATTCCTAAA
* * *** *
467305 TGTACACCCTAGGCATAAAAGCTTCTCAATGACTAGATTGGACTCGACCTAAAAAAAATTATCAA
390 TGTACACCCTAGGCATAAAAGCTACTCAATGACTACATCACACTCGACCTAAAAAAAATTACCAA
* * * * **
467370 AATGCCTATGAGGTATACCTTCGACATGAAAATATCCTAGTAATCCTAAAGAACACGAAGGGATC
455 AATACCCATAAGGTATACCTTCGACATGAAAATATCCTAGTAACCCTAAAGAACACGAAAAGATC
*
467435 ATGAAAGGATGAACCTATCCTAAATGTATAC-TTTTGGCATAAAAATGACCTTAAGGTACACC
520 ATGAAAGGACGAACCTATCCTAAATGTATACTTTTTGGCATAAAAATGACCTTAAGGTACACC
* *
467497 TTTTTAATATCTTTGAAAGTTAAAACATTTTTTGCACCCATCCGAAAGACTAGAAGAACATGAAA
1 TTTTTAATATCTTTGAAAGTCAAAACATCTTTTGCACCCATCCGAAAGACTAGAAGAACATG-AA
**
467562 GTGTTTTATCA-TCTTTTTTGTATCATGCT-GAAAAGCTAGAGGAATA-TGAAAAGTTTCAAAAA
65 GTGTTTTATCATTCTTTTTTGTATCATGCTAG-AAAGCTAGAGGAATACAAAAAAGTTTCAAAAA
* * *
467624 ATCAAATTATCTCTTGTACCCCATTGGATG-ACTAAAGGAATACAAAAGGTTTTATTTTATAAAA
129 ATAAAAATATCTCTTGTACCCCATTGGATGAAC-AAAGAAATACAAAAGGTTTTATTTTATAAAA
* * * **
467688 ATTAAAAAATTCTCGATTTTCATTTTGAAAGAGGATATCTTGTTGTTAAAATAATTTGTAAAACC
193 ATTAAAAAATTCTC-A-----ATCTT----CA--ATATCTTGTTATTAAAATAATCCGTAAAACC
* * *** * * *
467753 CCTCTTA-TATT-TAAGAAAAATTTTGCGTATTATTTTAACTTGGAGATATTGCCTTGATTTTTT
246 CCTCTCATTATTCTAAGAAAAATTTTACGTATTATTTTAACTCAAAGACATTGCCGTGATTTTCT
* * *
467816 AAAAATTCAAATTTTATTAAAATTA-CTAAAAAAATTCCAAGAAATACAATGGACTAAAATGATG
311 AAAAATTCAAATTTTATTAAAAATATCTAAAAAAATTCCAAGAAATACAACGGACTAAAATGAGG
* ** *
467880 AACCTATTCCTAAATGTATACTTTAGGCATAAAAGCTACTCAATGACTACATCACACTCGGCCCT
376 AACCTATTCCTAAATGTACACCCTAGGCATAAAAGCTACTCAATGACTACATCACACTC-GACCT
* * * * * *
467945 -AGAAAAATTACCAAAATACCCCTAAGGTGTACTTTCGATATGAAAGTATCCTAGTAACCCTAAA
440 AAAAAAAATTACCAAAATACCCATAAGGTATACCTTCGACATGAAAATATCCTAGTAACCCTAAA
* * *
468009 GGACACGAAAAGATCATTAAAGGACGAACCTATCCTAAATGTATACTTTTTGGTATAAAA
505 GAACACGAAAAGATCATGAAAGGACGAACCTATCCTAAATGTATACTTTTTGGCATAAAA
468069 GCGACCTGAT
Statistics
Matches: 484, Mismatches: 71, Indels: 26
0.83 0.12 0.04
Matches are distributed among these distances:
579 2 0.00
580 82 0.17
581 31 0.06
582 54 0.11
583 12 0.02
586 4 0.01
589 179 0.37
590 83 0.17
591 4 0.01
592 33 0.07
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (582 bp):
TTTTTAATATCTTTGAAAGTCAAAACATCTTTTGCACCCATCCGAAAGACTAGAAGAACATGAAG
TGTTTTATCATTCTTTTTTGTATCATGCTAGAAAGCTAGAGGAATACAAAAAAGTTTCAAAAAAT
AAAAATATCTCTTGTACCCCATTGGATGAACAAAGAAATACAAAAGGTTTTATTTTATAAAAATT
AAAAAATTCTCAATCTTCAATATCTTGTTATTAAAATAATCCGTAAAACCCCTCTCATTATTCTA
AGAAAAATTTTACGTATTATTTTAACTCAAAGACATTGCCGTGATTTTCTAAAAATTCAAATTTT
ATTAAAAATATCTAAAAAAATTCCAAGAAATACAACGGACTAAAATGAGGAACCTATTCCTAAAT
GTACACCCTAGGCATAAAAGCTACTCAATGACTACATCACACTCGACCTAAAAAAAATTACCAAA
ATACCCATAAGGTATACCTTCGACATGAAAATATCCTAGTAACCCTAAAGAACACGAAAAGATCA
TGAAAGGACGAACCTATCCTAAATGTATACTTTTTGGCATAAAAATGACCTTAAGGTACACC
Found at i:477129 original size:21 final size:21
Alignment explanation
Indices: 477096--477136 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
477086 CTAAGTAAAA
477096 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
477117 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
477137 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:477201 original size:20 final size:21
Alignment explanation
Indices: 477169--477228 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 21
477159 GGTCAAAACC
* *
477169 TTGAAAAGTATCGATACACAT
1 TTGAATAGTATCGATACACAA
477190 TTGAAT-GTATCGATACA-AA
1 TTGAATAGTATCGATACACAA
*
477209 TTGCATAGTATCGATACACA
1 TTGAATAGTATCGATACACA
477229 CAAATATGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.18
20 22 0.65
21 6 0.18
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (21 bp):
TTGAATAGTATCGATACACAA
Found at i:477342 original size:10 final size:10
Alignment explanation
Indices: 477323--477353 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
477313 AATCTCATTT
477323 TCACTGTTCA
1 TCACTGTTCA
*
477333 TCACTATTCA
1 TCACTGTTCA
477343 TCACTGTTCA
1 TCACTGTTCA
477353 T
1 T
477354 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:477369 original size:22 final size:22
Alignment explanation
Indices: 477341--477396 Score: 96
Period size: 21 Copynumber: 2.6 Consensus size: 22
477331 CATCACTATT
477341 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
*
477363 CATCACT-TTCAAGTATCGATA
1 CATCACTGTTCATGTATCGATA
477384 CATCACTGTTCAT
1 CATCACTGTTCAT
477397 ACTGTTCACG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 20 0.65
22 11 0.35
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.36
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:477490 original size:13 final size:13
Alignment explanation
Indices: 477472--477497 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
477462 ACATATTTGT
477472 GTGTATCGATACA
1 GTGTATCGATACA
477485 GTGTATCGATACA
1 GTGTATCGATACA
477498 TCATAAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GTGTATCGATACA
Found at i:478039 original size:34 final size:35
Alignment explanation
Indices: 477976--478042 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
477966 CTAAGTGATT
477976 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
478012 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
478043 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:479161 original size:21 final size:21
Alignment explanation
Indices: 479135--479176 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
479125 AATCAATCGT
* *
479135 TCAAGATGATGATGAAGATGA
1 TCAAGAGGATGATGAAAATGA
*
479156 TCAAGAGGTTGATGAAAATGA
1 TCAAGAGGATGATGAAAATGA
479177 AGAAATGGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.05, G:0.29, T:0.24
Consensus pattern (21 bp):
TCAAGAGGATGATGAAAATGA
Found at i:479722 original size:84 final size:84
Alignment explanation
Indices: 479562--479722 Score: 186
Period size: 84 Copynumber: 1.9 Consensus size: 84
479552 ACTCAAAGAA
* * * *
479562 GAAAATAAATCAATAAGTGTAGAGAATCATATTCTTGAAAAGAAATTAAGTGAATTAGAGAAGAG
1 GAAAATAAATCAATAAGTGTAGAAAATCATATTCTTAAAAAGAAAATAAATGAATTAGAGAAGAG
* *
479627 TATGAAAGAGTTACAAAAT
66 AAAGAAAGAGTTACAAAAT
* *
479646 GAAAATAAATCAATGAGTTTAGAAAAT-A-ATTCTTTTAAAAAGAAAATAAATGAATT--AGAAG
1 GAAAATAAATCAATAAGTGTAGAAAATCATATTC--TTAAAAAGAAAATAAATGAATTAGAGAAG
479707 AGAAAAGAAATGAGTT
64 AG-AAAGAAA-GAGTT
479723 GCAAGTCGAA
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
82 11 0.17
83 6 0.09
84 48 0.74
ACGTcount: A:0.53, C:0.04, G:0.17, T:0.25
Consensus pattern (84 bp):
GAAAATAAATCAATAAGTGTAGAAAATCATATTCTTAAAAAGAAAATAAATGAATTAGAGAAGAG
AAAGAAAGAGTTACAAAAT
Found at i:482819 original size:21 final size:21
Alignment explanation
Indices: 482786--482826 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
482776 CTAAGTAAAA
482786 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
482807 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
482827 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:482891 original size:20 final size:21
Alignment explanation
Indices: 482859--482918 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 21
482849 GGTCAAAACC
* *
482859 TTGAAAAGTATCGATACACAT
1 TTGAATAGTATCGATACACAA
482880 TTGAAT-GTATCGATACA-AA
1 TTGAATAGTATCGATACACAA
*
482899 TTGCATAGTATCGATACACA
1 TTGAATAGTATCGATACACA
482919 CAAATATGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.18
20 22 0.65
21 6 0.18
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (21 bp):
TTGAATAGTATCGATACACAA
Found at i:483032 original size:10 final size:10
Alignment explanation
Indices: 483013--483043 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
483003 AATCTCATTT
483013 TCACTGTTCA
1 TCACTGTTCA
*
483023 TCACTATTCA
1 TCACTGTTCA
483033 TCACTGTTCA
1 TCACTGTTCA
483043 T
1 T
483044 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:483059 original size:22 final size:22
Alignment explanation
Indices: 483031--483086 Score: 96
Period size: 21 Copynumber: 2.6 Consensus size: 22
483021 CATCACTATT
483031 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
*
483053 CATCACT-TTCAAGTATCGATA
1 CATCACTGTTCATGTATCGATA
483074 CATCACTGTTCAT
1 CATCACTGTTCAT
483087 ACTGTTCACG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 20 0.65
22 11 0.35
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.36
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:483180 original size:13 final size:13
Alignment explanation
Indices: 483162--483187 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
483152 ACATATTTGT
483162 GTGTATCGATACA
1 GTGTATCGATACA
483175 GTGTATCGATACA
1 GTGTATCGATACA
483188 TCATAAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GTGTATCGATACA
Found at i:483729 original size:34 final size:35
Alignment explanation
Indices: 483666--483732 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
483656 CTAAGTGATT
483666 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
483702 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
483733 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:484959 original size:18 final size:18
Alignment explanation
Indices: 484923--484961 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
484913 ATGAAAAAGT
* * *
484923 CAAAAGTAAACACACAAA
1 CAAAAGTAAAAAAAAAAA
484941 CAAAAGTAAAAAAAAAAA
1 CAAAAGTAAAAAAAAAAA
484959 CAA
1 CAA
484962 CAAAAAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.74, C:0.15, G:0.05, T:0.05
Consensus pattern (18 bp):
CAAAAGTAAAAAAAAAAA
Found at i:484964 original size:25 final size:26
Alignment explanation
Indices: 484930--484983 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
484920 AGTCAAAAGT
*
484930 AAACACACAAACAAAAGTA-AAAAAAA
1 AAACACACAAA-AAAAATACAAAAAAA
*
484956 AAACA-ACAAAAAAAATACACAAAAA
1 AAACACACAAAAAAAATACAAAAAAA
484981 AAA
1 AAA
484984 GAGAGAGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.24
25 14 0.56
26 5 0.20
ACGTcount: A:0.80, C:0.15, G:0.02, T:0.04
Consensus pattern (26 bp):
AAACACACAAAAAAAATACAAAAAAA
Found at i:484968 original size:14 final size:13
Alignment explanation
Indices: 484949--484983 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
484939 AACAAAAGTA
484949 AAAAAAAAAACAAC
1 AAAAAAAAAAC-AC
*
484963 AAAAAAAATACAC
1 AAAAAAAAAACAC
484976 AAAAAAAA
1 AAAAAAAA
484984 GAGAGAGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.86, C:0.11, G:0.00, T:0.03
Consensus pattern (13 bp):
AAAAAAAAAACAC
Found at i:486315 original size:31 final size:30
Alignment explanation
Indices: 486280--486521 Score: 250
Period size: 31 Copynumber: 7.8 Consensus size: 30
486270 ATCTCTCTTC
*
486280 TCAAAGTCCACGACTTAGTGGCATCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTT-T
* * *
486311 TCAAAGTCCACGACCCAGTGGCAATATCTTT
1 TCAAAGTCCACGACTCAGTGGC-ATCTTTTT
* *
486342 TCAAAGTCCACAACTCAGTGGCATCCTTTT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTT
* *
486372 TCTAAGTCCATGACTCAGTGGCATCCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCAT-CTTTT-T
* * *
486404 TCCTAAAGTCCATGACTCAGTGGCAATCTCTTC
1 T-C-AAAGTCCACGACTCAGTGGC-ATCTTTTT
*
486437 TCAAAGTCCACGACTCAGTGGCATCTTCTT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTT
* * *
486467 TCTAAAGTCCACGACTCAATGGCATCTCTTG
1 TC-AAAGTCCACGACTCAGTGGCATCTTTTT
* * *
486498 TCCAAGTCCACAATTCAGTGGCAT
1 TCAAAGTCCACGACTCAGTGGCAT
486522 TTTGTCCCAA
Statistics
Matches: 176, Mismatches: 28, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
30 51 0.29
31 90 0.51
32 8 0.05
33 2 0.01
34 23 0.13
35 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.31
Consensus pattern (30 bp):
TCAAAGTCCACGACTCAGTGGCATCTTTTT
Found at i:486443 original size:95 final size:94
Alignment explanation
Indices: 486277--486492 Score: 303
Period size: 95 Copynumber: 2.3 Consensus size: 94
486267 CAAATCTCTC
*
486277 TTCTCAAAGTCCACGACTTAGTGGCAT-CTTTTCTTCAAAGTCCACGACCCAGTGGCAATATCTT
1 TTCT-AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACCCAGTGGCAATATCTT
*
486341 TTCAAAGTCCACAACTCAGTGGCATCCTT-T
65 CTCAAAGTCCACAACTCAGTGGCAT-CTTCT
* * * *
486371 TTCT-AAGTCCATGACTCAGTGGCATCCTTTTCTTCCTAAAGTCCATGACTCAGTGGCAATCTCT
1 TTCTAAAGTCCACGACTCAGTGGCATCCTTTTCTT-C-AAAGTCCACGACCCAGTGGCAATATCT
*
486435 TCTCAAAGTCCACGACTCAGTGGCATCTTCT
64 TCTCAAAGTCCACAACTCAGTGGCATCTTCT
*
486466 TTCTAAAGTCCACGACTCAATGGCATC
1 TTCTAAAGTCCACGACTCAGTGGCATC
486493 TCTTGTCCAA
Statistics
Matches: 108, Mismatches: 9, Indels: 8
0.86 0.07 0.06
Matches are distributed among these distances:
92 19 0.18
93 8 0.07
94 8 0.07
95 53 0.49
96 20 0.19
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (94 bp):
TTCTAAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACCCAGTGGCAATATCTTC
TCAAAGTCCACAACTCAGTGGCATCTTCT
Found at i:486505 original size:126 final size:126
Alignment explanation
Indices: 486282--486521 Score: 308
Period size: 126 Copynumber: 1.9 Consensus size: 126
486272 CTCTCTTCTC
* *
486282 AAAGTCCACGACTTAGTGGCATCTTTTCTTCAAAGTCCACGACCCAGTGGCAATATCTTTTCAAA
1 AAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGTCCACGACCCAGTGGCAATATCTTTTCAAA
* * * **
486347 GTCCACAACTCAGTGGCATCCTTTTTCTAAGTCCATGACTCAGTGGCATCCTTTTCTTCCT
66 GTCCACAACTCAATGGCATCCTTTGTCCAAGTCCACAACTCAGTGGCATCCTTTTCTTCCT
* * *
486408 AAAGTCCATGACTCAGTGGCAATCTCTTC-TCAAAGTCCACGACTCAGTGGC-ATCT-TCTTTCT
1 AAAGTCCACGACTCAGTGGC-ATCTCTTCTTCAAAGTCCACGACCCAGTGGCAATATCT-TTTC-
* *
486470 AAAGTCCACGACTCAATGGCAT-CTCTTGTCCAAGTCCACAATTCAGTGGCAT
63 AAAGTCCACAACTCAATGGCATCCT-TTGTCCAAGTCCACAACTCAGTGGCAT
486522 TTTGTCCCAA
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
124 1 0.01
125 9 0.09
126 81 0.83
127 7 0.07
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (126 bp):
AAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGTCCACGACCCAGTGGCAATATCTTTTCAAA
GTCCACAACTCAATGGCATCCTTTGTCCAAGTCCACAACTCAGTGGCATCCTTTTCTTCCT
Done.