genome.fa.s1182.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1182
Parameters: 2 7 7 80 10 50 1000
Length:  49575

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4587--4655	33	2.1	32	89	10	104	37	15	11	34	1.84
4685--4737	20	2.7	20	82	8	63	35	16	13	33	1.88
5288--5329	22	1.9	22	95	0	75	30	28	0	40	1.57
10203--10241	16	2.4	16	100	0	78	51	10	12	25	1.71
12695--12764	19	3.6	19	75	11	79	40	12	17	30	1.87
12674--12766	39	2.4	39	90	0	141	38	10	17	33	1.84
12673--12743	20	3.6	20	74	11	74	36	9	18	35	1.84
12733--12829	32	3.0	32	80	1	104	40	12	15	31	1.84
14544--14576	14	2.3	15	89	5	50	18	0	6	75	1.00
21674--21821	79	1.9	79	84	2	199	27	27	14	29	1.96
21675--21908	129	1.8	130	87	2	355	26	27	14	31	1.95
21753--21871	50	2.4	51	82	4	143	26	29	15	29	1.96
21675--21948	129	2.1	130	83	4	340	27	27	14	30	1.95
21804--22022	79	2.8	78	82	8	257	26	26	15	30	1.96
28152--28784	60	10.4	61	87	4	858	25	27	19	27	1.99
28154--28784	121	5.2	121	87	4	905	25	27	19	27	1.99
28765--29049	46	6.4	46	74	11	245	20	28	12	38	1.89
28767--29028	87	3.0	87	81	8	307	19	29	11	39	1.87
28851--29101	133	1.9	133	79	6	285	19	29	12	39	1.88
29664--29718	20	2.8	20	86	10	85	30	14	10	43	1.80
32087--32205	51	2.3	51	85	2	150	26	29	14	29	1.95
32138--32356	79	2.8	79	79	6	253	26	25	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32011--32257	130	1.9	129	84	4	327	27	27	13	32	1.94
33878--33934	9	6.1	9	82	10	53	84	7	1	7	0.85
34036--34216	89	2.0	89	93	0	308	27	19	26	27	1.99
35244--36159	28	32.1	28	84	4	1107	28	29	17	23	1.97
35244--36156	57	16.0	57	88	2	1221	28	29	17	23	1.97
40228--40260	16	2.1	16	88	11	50	87	12	0	0	0.53
41554--42228	30	21.0	33	75	17	351	21	31	14	32	1.93
41594--41849	34	7.6	35	83	8	230	20	31	14	33	1.92
41557--42221	101	6.9	92	77	14	374	21	31	15	31	1.94
41856--42030	62	2.8	62	87	6	230	24	30	17	28	1.97
42011--42056	23	2.0	23	95	0	83	28	32	21	17	1.96
42036--42246	33	6.3	33	76	10	187	21	34	12	31	1.91
42034--42222	64	2.9	64	77	9	175	21	34	13	30	1.92
42034--42161	68	1.9	68	84	6	156	20	34	14	31	1.92
42036--42247	101	2.1	100	92	2	354	21	34	12	31	1.91
42234--42390	33	4.8	33	89	3	237	29	30	19	21	1.97
42231--42390	65	2.5	64	90	5	250	28	31	18	21	1.97
42445--43036	43	13.1	43	82	10	698	25	24	18	31	1.98
42395--43139	92	8.0	92	88	6	1001	24	25	18	31	1.97
42990--43139	52	2.9	52	91	0	237	22	26	18	33	1.96
43942--44042	32	3.1	32	97	1	184	34	10	18	35	1.86
43941--44037	13	5.7	19	71	27	92	34	11	18	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44093--44241	52	2.9	51	84	7	185	34	17	16	31	1.93
44273--44391	60	2.0	60	100	0	238	31	16	18	33	1.94
48024--48100	20	3.8	20	84	0	91	29	14	14	41	1.85

Tables:   1

The End!