Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1184
Parameters: 2 7 7 80 10 50 1000
Length:  60716

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1828--1867
20
2.0
20
85
0
53
42
0
2
55
1.13
3173--3225
13
4.0
14
81
13
51
37
1
0
60
1.08
3181--3232
13
4.1
13
85
7
63
42
1
0
55
1.10
3675--3699
13
1.9
13
100
0
50
32
16
16
36
1.90
3708--3888
52
3.5
52
96
0
326
34
18
17
29
1.94
7664--7699
17
2.1
17
90
10
56
63
2
0
33
1.08
13220--13263
22
2.0
22
100
0
88
18
22
18
40
1.91
13382--13453
26
2.7
27
82
4
74
48
2
0
48
1.16
13566--13636
29
2.4
28
88
6
97
45
0
0
54
0.99
13606--13671
17
3.5
17
78
21
78
48
1
0
50
1.10
13612--13662
23
2.3
22
83
6
59
50
1
0
47
1.12
13994--14032
2
19.5
2
100
0
78
48
0
0
51
1.00
14468--14546
24
3.4
22
70
15
61
58
2
1
37
1.20
14555--14602
17
2.8
17
83
3
60
35
0
2
62
1.07
14935--15000
18
3.8
17
77
15
73
39
1
0
59
1.07
14966--15014
18
2.3
23
80
19
54
40
2
0
57
1.10
14966--15007
19
2.3
17
84
15
57
40
2
0
57
1.12
16029--16073
22
2.0
23
84
16
60
40
0
0
60
0.97
16838--16862
2
12.5
2
100
0
50
52
0
0
48
1.00
17343--17375
2
16.5
2
93
0
57
54
0
45
0
0.99
17607--17653
22
2.1
22
84
0
58
31
6
8
53
1.57
18533--18571
14
2.8
14
84
0
51
43
0
0
56
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19601--19639
2
19.5
2
100
0
78
51
0
0
48
1.00
20620--20648
2
14.5
2
100
0
58
51
0
0
48
1.00
21350--21384
2
17.5
2
100
0
70
51
0
48
0
1.00
21600--21652
20
2.6
20
74
14
54
33
1
0
64
1.05
22438--22471
15
2.3
15
90
5
52
58
2
2
35
1.28
23642--23719
30
2.6
31
76
13
83
52
2
0
44
1.14
24102--24147
22
2.0
24
83
8
60
41
0
2
56
1.11
24645--24705
31
2.0
31
90
6
97
39
13
6
40
1.70
25781--25840
30
2.0
31
86
3
86
55
0
1
43
1.10
25864--25909
14
3.4
14
82
14
60
45
2
0
52
1.13
25864--25910
13
3.4
14
80
11
53
46
2
0
51
1.13
26137--26164
14
2.0
14
100
0
56
7
50
0
42
1.30
28658--28748
47
1.9
47
88
0
137
59
7
6
26
1.50
29672--29755
25
3.6
23
72
12
64
58
1
0
40
1.06
29683--29755
8
9.0
8
72
23
55
58
1
0
39
1.06
30544--30590
21
2.2
22
77
11
53
44
0
0
55
0.99
30576--30627
16
3.3
15
77
20
52
38
3
1
55
1.29
32007--32055
10
5.0
10
80
5
55
71
0
2
26
0.97
32007--32059
19
2.7
19
88
2
70
71
0
1
26
0.96
32018--32070
19
2.7
19
83
11
63
67
1
0
30
1.01
32048--32125
33
2.4
31
79
10
84
55
3
0
41
1.18
32081--32124
18
2.3
20
76
11
56
54
2
0
43
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32470--32499
16
1.9
15
93
6
51
66
0
0
33
0.92
32473--32520
11
4.3
10
80
17
51
60
0
2
37
1.09
33066--33145
43
1.9
40
87
12
117
31
0
6
62
1.20
33095--33145
20
2.6
19
81
9
57
31
0
3
64
1.11
35876--35917
2
21.0
2
100
0
84
50
0
0
50
1.00
36401--36428
13
2.2
13
100
0
56
25
42
14
17
1.87
40601--40646
15
3.0
15
77
3
56
39
0
6
54
1.26
40964--41014
16
3.2
16
88
2
77
43
1
1
52
1.23
40948--41014
31
2.2
31
81
5
73
40
4
2
52
1.37
40964--41028
16
4.1
15
82
7
67
41
1
4
52
1.31
40964--41028
31
2.1
32
85
8
89
41
1
4
52
1.31
41746--41779
11
3.0
11
91
4
50
29
0
0
70
0.87
44255--44322
23
3.3
20
82
12
68
32
1
0
66
1.01
44276--44322
9
4.8
10
80
12
53
31
0
0
68
0.90
44802--44860
8
7.6
8
90
9
88
22
0
0
77
0.76
46529--46630
34
3.1
32
79
16
102
40
0
1
57
1.10
46604--46645
22
1.9
22
90
9
68
38
0
0
61
0.96
46623--46686
29
2.2
29
78
13
69
51
0
0
48
1.00
46670--46699
14
2.1
14
93
0
51
66
0
0
33
0.92
56644--56701
29
2.0
31
86
10
86
41
0
6
51
1.28
59078--59107
13
2.3
13
100
0
60
56
0
0
43
0.99
60198--60252
14
3.9
15
72
11
53
34
18
14
32
1.91

Tables:   1

The End!