Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1187
Parameters: 2 7 7 80 10 50 1000
Length:  47219

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
257--404
19
7.4
19
69
17
77
63
1
1
33
1.11
272--332
25
2.4
25
80
5
68
67
0
1
31
1.01
1288--1319
3
10.7
3
93
0
55
65
3
0
31
1.08
3232--3267
2
17.5
2
94
5
63
50
0
2
47
1.15
5585--5646
31
2.0
31
83
0
79
22
11
14
51
1.74
6921--6964
23
1.9
23
90
0
70
40
0
0
59
0.98
8112--8160
25
2.0
24
84
8
62
51
2
0
46
1.12
8317--8349
16
2.1
16
88
11
50
48
0
3
48
1.17
8689--8755
6
10.5
6
75
12
53
80
0
16
2
0.83
8700--8742
9
4.6
9
85
8
59
86
0
11
2
0.67
8696--8757
10
6.0
10
78
17
65
82
0
14
3
0.80
8690--8736
24
1.9
23
87
12
67
82
0
14
2
0.75
8696--8757
19
3.0
20
88
9
90
82
0
14
3
0.80
8693--8757
33
2.0
32
85
8
87
81
0
15
3
0.81
9967--10008
6
7.0
6
100
0
84
66
0
0
33
0.92
10194--10224
16
1.9
16
93
0
53
61
6
6
25
1.45
11289--11352
32
2.0
32
100
0
128
59
6
6
28
1.46
11299--11350
16
3.2
16
70
20
54
57
7
3
30
1.45
12437--12483
15
3.1
15
84
12
60
61
0
0
38
0.96
14200--14262
23
2.8
22
83
11
74
55
1
1
41
1.19
14212--14264
22
2.4
21
84
9
70
60
0
0
39
0.97
17380--17495
33
3.5
33
87
8
157
44
0
16
37
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17375--17471
13
7.4
13
71
15
58
45
0
16
38
1.48
17388--17501
20
5.4
20
71
21
74
45
0
15
37
1.53
17388--17497
7
16.6
7
70
19
67
45
0
16
37
1.54
18860--18907
22
2.2
22
85
10
64
54
0
2
43
1.12
20620--20664
13
3.6
13
77
19
51
64
0
0
35
0.94
20625--20674
25
2.0
25
84
7
66
66
2
0
32
1.03
20620--20674
15
3.9
15
79
9
53
65
1
0
32
1.03
20630--20680
24
2.1
25
82
10
61
64
1
1
31
1.15
21816--21860
23
2.0
23
82
8
56
55
2
0
42
1.12
21808--21870
20
3.2
19
81
18
76
55
1
0
42
1.09
21948--21986
18
2.1
19
85
9
53
30
5
0
64
1.15
23455--23496
16
2.6
16
84
3
57
54
16
0
28
1.42
25440--25505
22
3.0
22
79
2
78
37
13
9
39
1.77
25602--25672
33
2.3
30
79
15
81
39
23
9
26
1.86
25615--25677
33
1.9
33
93
0
108
42
23
9
23
1.83
26532--26564
2
16.5
2
100
0
66
48
0
0
51
1.00
26892--26931
19
2.1
19
86
9
55
57
7
0
35
1.27
32161--32198
13
2.7
14
80
12
51
47
0
2
50
1.15
32174--32219
20
2.3
20
80
0
56
41
2
4
52
1.33
32306--32379
29
2.5
30
76
12
89
43
10
6
39
1.66
34742--34885
29
4.8
29
75
9
108
34
4
2
57
1.34
34729--34885
31
5.1
31
76
6
142
34
4
2
58
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36548--36596
2
26.0
2
78
12
50
42
2
4
51
1.32
39360--39431
29
2.5
28
73
10
83
31
2
15
50
1.58
41552--41643
40
2.3
41
81
9
109
36
6
4
52
1.47
44222--44273
22
2.3
23
80
12
63
51
0
1
46
1.12
45756--45820
26
2.4
28
82
7
71
24
7
15
52
1.69
45806--45917
57
1.9
57
82
8
138
33
15
8
43
1.75

Tables:   1

The End!