genome.fa.s1188.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1188
Parameters: 2 7 7 80 10 50 1000
Length:  122738

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14--73	28	2.2	27	93	3	102	36	16	8	38	1.79
5869--5905	2	18.5	2	94	0	65	51	0	0	48	1.00
6455--7899	481	3.0	481	94	0	2512	34	10	16	37	1.84
10098--10149	15	3.4	14	82	12	59	78	9	3	7	1.06
10240--10287	17	2.5	21	74	25	68	22	18	12	45	1.83
10247--10288	17	2.5	17	100	0	84	26	19	11	42	1.85
10259--10300	17	2.5	17	88	0	57	28	19	9	42	1.82
10861--10894	16	2.1	17	88	5	52	76	0	2	20	0.92
11037--11250	45	4.8	45	92	0	338	55	13	23	7	1.64
11131--11203	18	4.6	18	67	28	65	54	16	20	8	1.67
11149--11229	27	3.3	27	65	28	81	58	13	20	7	1.60
11207--11247	17	2.4	18	88	8	59	56	12	26	4	1.56
11397--11520	47	2.6	47	93	0	212	46	34	13	4	1.65
13671--14137	249	1.9	249	92	0	781	42	15	14	27	1.85
14233--14471	118	2.0	118	91	3	392	38	14	13	33	1.85
17287--17344	15	3.7	15	82	15	64	60	0	0	39	0.97
18758--18796	15	2.5	15	95	4	69	43	7	7	41	1.62
21762--21796	13	2.8	12	87	12	52	31	0	5	62	1.18
39166--39200	13	2.7	13	90	0	52	14	0	5	80	0.89
40679--40744	31	2.1	31	88	0	96	16	22	18	42	1.89
41341--41859	43	12.2	43	85	2	593	36	16	31	15	1.91
41341--41859	85	6.1	85	84	1	621	36	16	31	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41350--41856	128	4.0	128	84	4	598	36	16	31	14	1.90
47628--47972	105	3.3	103	70	12	270	31	11	26	29	1.92
47633--47803	51	3.3	51	79	4	198	32	11	26	28	1.92
47786--47852	28	2.4	27	87	7	91	22	17	35	23	1.95
47786--47861	27	2.8	28	86	6	93	21	19	34	25	1.96
50333--50358	13	2.0	13	100	0	52	38	15	15	30	1.88
50312--50378	33	2.0	33	88	0	98	43	16	14	25	1.86
50398--50465	19	3.9	18	76	23	83	38	14	11	35	1.83
50420--50444	13	1.9	13	100	0	50	32	16	16	36	1.90
50401--50463	32	2.0	32	96	0	117	36	15	12	34	1.86
50521--50577	21	2.7	21	97	0	105	36	19	10	33	1.86
50582--50627	1	46.0	1	93	0	65	4	2	0	93	0.41
50582--50630	18	2.9	18	91	8	77	8	4	0	87	0.65
59761--59798	13	2.9	13	81	14	51	18	0	5	76	0.97
61390--61429	20	2.0	21	85	5	55	17	2	2	77	0.99
74510--74586	20	3.8	20	84	6	75	41	11	15	31	1.83
75359--76476	28	39.5	28	78	11	499	28	15	29	27	1.96
75357--75890	29	18.3	28	83	7	491	23	16	30	29	1.96
75343--75853	143	3.5	144	82	6	494	22	17	30	29	1.97
75617--75834	32	7.1	31	84	9	204	18	16	32	32	1.94
75349--75750	90	4.6	89	85	5	415	22	16	30	30	1.96
75830--76442	110	5.6	108	78	8	550	32	14	29	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77736--77812	22	3.5	22	77	11	79	10	9	6	74	1.23
80206--80240	15	2.3	15	95	0	61	11	11	42	34	1.77
84829--84902	20	3.7	19	80	7	76	40	12	16	31	1.85
86626--86812	30	6.3	29	82	4	196	25	31	16	26	1.96
86626--86812	59	3.2	57	83	7	205	25	31	16	26	1.96
86622--86812	29	6.5	29	82	7	199	24	31	16	27	1.96
86833--86976	60	2.4	59	81	4	157	29	22	20	27	1.99
87170--87591	52	8.1	52	85	2	472	26	24	13	34	1.93
88441--88492	21	2.5	21	83	0	68	32	13	15	38	1.86
88530--88583	20	2.7	20	88	0	81	38	14	9	37	1.79
97748--97782	17	2.0	18	88	5	54	82	0	8	8	0.83
97748--97785	19	2.1	17	90	9	58	81	0	7	10	0.87
97808--97841	9	3.7	9	84	7	50	2	8	2	85	0.80
102291--102331	2	20.5	2	89	0	64	0	43	0	56	0.99
102331--102401	2	35.5	2	85	0	97	43	4	2	49	1.36
103387--103428	18	2.3	18	84	8	50	38	0	2	59	1.10
105384--105458	20	3.8	20	80	0	96	33	13	12	41	1.81
105384--105461	40	2.0	39	89	2	120	33	12	12	41	1.82
112827--112855	10	2.9	10	100	0	58	93	6	0	0	0.36
113899--114682	55	14.3	55	89	3	1141	24	32	15	28	1.95
113867--115567	28	59.6	28	83	7	1237	27	31	16	24	1.96
113901--114682	82	9.5	82	92	1	1129	24	31	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113867--115567	137	11.9	139	83	7	1193	27	31	16	24	1.96
113919--115601	164	9.8	173	84	7	1116	27	31	17	24	1.97
116175--116249	20	3.8	20	78	0	87	32	13	13	41	1.83
116175--116252	40	2.0	39	87	2	111	32	12	14	41	1.83
122574--122619	21	2.3	21	88	7	69	19	2	10	67	1.31

Tables:   1

The End!