Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold119
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3173904
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 20
Found at i:193787 original size:34 final size:34
Alignment explanation
Indices: 193749--193884 Score: 254
Period size: 34 Copynumber: 4.0 Consensus size: 34
193739 CTTTGTTAAG
193749 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
193783 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
*
193817 TGTATTTGGTGAGAATGTTAAGTGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
*
193851 TGTGTTTGGTGAGAATGTTAGGTGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
193885 GAATGTTAGG
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 99 1.00
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (34 bp):
TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
Found at i:193850 original size:56 final size:58
Alignment explanation
Indices: 193790--194025 Score: 145
Period size: 56 Copynumber: 4.0 Consensus size: 58
193780 TGATGTATTT
*
193790 GGTGA-GAATGTTAGGT-GTGTTAGGTGATGTATTTGGTGAGAATGTTAAGTGTGTTA
1 GGTGATGAATGTTAGGTGGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
* *
193846 GGTGATG--TGTTTGGTGAGAATGTTAGGTG-TG--TTAGGTGAGAATGTTAGGTGTGTTA
1 GGTGATGAATGTTAGGTG-G--TGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
* * * * ** *
193902 GGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTGTTTGGT--GAGA-ATGTTAGGT
1 GGTGATG-A-AT-GTTAG---G-T--G-GTGTTAGGTGATGTATTTGGTGAGA-ATGT-TAGGT-
193964 GTGTTA
53 GTGTTA
*
193970 GGTGA-GAATGTTAGGT-GTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTTTGTTA
1 GGTGATGAATGTTAGGTGGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
194026 ACATGTATAT
Statistics
Matches: 136, Mismatches: 19, Indels: 50
0.66 0.09 0.24
Matches are distributed among these distances:
55 7 0.05
56 60 0.44
57 5 0.04
58 5 0.04
59 9 0.07
60 2 0.01
61 4 0.03
64 5 0.04
65 11 0.08
66 6 0.04
67 6 0.04
68 16 0.12
ACGTcount: A:0.21, C:0.00, G:0.39, T:0.40
Consensus pattern (58 bp):
GGTGATGAATGTTAGGTGGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
Found at i:193883 original size:22 final size:22
Alignment explanation
Indices: 193851--193996 Score: 151
Period size: 22 Copynumber: 6.5 Consensus size: 22
193841 TGTTAGGTGA
*
193851 TGTGTTTGGTGAGAATGTTAGG
1 TGTGTTAGGTGAGAATGTTAGG
193873 TGTGTTAGGTGAGAATGTTAGG
1 TGTGTTAGGTGAGAATGTTAGG
*
193895 TGTGTTAGGTGATGTAT-TT-GG
1 TGTGTTAGGTGA-GAATGTTAGG
193916 TGAGAATGTTAGGT--G--TGTTAGGTG
1 T--G--TGTTAGGTGAGAATGTTA-G-G
*
193940 ATGTGTTTGGTGAGAATGTTAGG
1 -TGTGTTAGGTGAGAATGTTAGG
193963 TGTGTTAGGTGAGAATGTTAGG
1 TGTGTTAGGTGAGAATGTTAGG
193985 TGTGTTAGGTGA
1 TGTGTTAGGTGA
193997 TGTATTTGGT
Statistics
Matches: 106, Mismatches: 4, Indels: 28
0.77 0.03 0.20
Matches are distributed among these distances:
20 1 0.01
21 12 0.11
22 69 0.65
23 8 0.08
24 2 0.02
25 14 0.13
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (22 bp):
TGTGTTAGGTGAGAATGTTAGG
Found at i:193895 original size:90 final size:90
Alignment explanation
Indices: 193790--194025 Score: 454
Period size: 90 Copynumber: 2.6 Consensus size: 90
193780 TGATGTATTT
*
193790 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAAGTGTGTTAGGTGATGTG
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTG
193855 TTTGGTGAGAATGTTAGGTGTGTTA
66 TTTGGTGAGAATGTTAGGTGTGTTA
193880 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTG
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTG
193945 TTTGGTGAGAATGTTAGGTGTGTTA
66 TTTGGTGAGAATGTTAGGTGTGTTA
*
193970 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTTTGTTA
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
194026 ACATGTATAT
Statistics
Matches: 144, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 144 1.00
ACGTcount: A:0.21, C:0.00, G:0.39, T:0.40
Consensus pattern (90 bp):
GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTG
TTTGGTGAGAATGTTAGGTGTGTTA
Found at i:193918 original size:68 final size:66
Alignment explanation
Indices: 193764--193974 Score: 197
Period size: 68 Copynumber: 3.2 Consensus size: 66
193754 TTGGTGAGAA
* *
193764 TGTTAGGTG-TGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTAT-TT-GG
1 TGTTAGGTGATGTTAGGTGATGTGTTTGGTGAGAATGTTAGGTGTGTTAGGTGA-GAATGTTAGG
193826 TGAG
65 T--G
*
193830 AATGTTAAGTG-TGTTAGGTGATGTGTTTGGTGAGAATGTTAGGTGTGTTAGGTGAGAATGTTAG
1 --TGTTAGGTGATGTTAGGTGATGTGTTTGGTGAGAATGTTAGGTGTGTTAGGTGAGAATGTTAG
193894 GTG
64 GTG
* * *
193897 TGTTAGGTGATGTATTTGGTGA-GAATGTTAGGT--G--TGTTAGGTGATGTGTTTGGTGAGAAT
1 TGTTAGGTGATG--TTAGGTGATG--TGTTTGGTGAGAATGTTA-G-G-TGTGTTAGGTGAGAAT
193957 GTTAGGTG
59 GTTAGGTG
193965 TGTTAGGTGA
1 TGTTAGGTGA
193975 GAATGTTAGG
Statistics
Matches: 126, Mismatches: 7, Indels: 20
0.82 0.05 0.13
Matches are distributed among these distances:
65 13 0.10
66 3 0.02
67 7 0.06
68 93 0.74
69 10 0.08
ACGTcount: A:0.20, C:0.00, G:0.39, T:0.41
Consensus pattern (66 bp):
TGTTAGGTGATGTTAGGTGATGTGTTTGGTGAGAATGTTAGGTGTGTTAGGTGAGAATGTTAGGT
G
Found at i:193922 original size:34 final size:34
Alignment explanation
Indices: 193880--193974 Score: 181
Period size: 34 Copynumber: 2.8 Consensus size: 34
193870 AGGTGTGTTA
193880 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
*
193914 GGTGAGAATGTTAGGTGTGTTAGGTGATGTGTTT
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
193948 GGTGAGAATGTTAGGTGTGTTAGGTGA
1 GGTGAGAATGTTAGGTGTGTTAGGTGA
193975 GAATGTTAGG
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 60 1.00
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (34 bp):
GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
Found at i:193966 original size:124 final size:124
Alignment explanation
Indices: 193742--193974 Score: 421
Period size: 124 Copynumber: 1.9 Consensus size: 124
193732 TTAATTTCTT
*
193742 TGTTAAGTGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTG
1 TGTTAAGTGTATTAGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTG
193807 TGTTAGGTGATGTATTTGGTGAGAATGTTAAGTGTGTTAGGTGATGTGTTTGGTGAGAA
66 TGTTAGGTGATGTATTTGGTGAGAATGTTAAGTGTGTTAGGTGATGTGTTTGGTGAGAA
* *
193866 TGTTAGGTGTGTTAGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTG
1 TGTTAAGTGTATTAGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTG
* *
193931 TGTTAGGTGATGTGTTTGGTGAGAATGTTAGGTGTGTTAGGTGA
66 TGTTAGGTGATGTATTTGGTGAGAATGTTAAGTGTGTTAGGTGA
193975 GAATGTTAGG
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
124 104 1.00
ACGTcount: A:0.21, C:0.00, G:0.39, T:0.41
Consensus pattern (124 bp):
TGTTAAGTGTATTAGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTG
TGTTAGGTGATGTATTTGGTGAGAATGTTAAGTGTGTTAGGTGATGTGTTTGGTGAGAA
Found at i:194537 original size:2 final size:2
Alignment explanation
Indices: 194532--194560 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
194522 CTCTCTCTTC
194532 TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
194561 CACCAAGTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:194552 original size:13 final size:13
Alignment explanation
Indices: 194534--194559 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
194524 CTCTCTTCTA
194534 TATATATATATAT
1 TATATATATATAT
194547 TATATATATATAT
1 TATATATATATAT
194560 ACACCAAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATATATATATAT
Found at i:194552 original size:15 final size:15
Alignment explanation
Indices: 194532--194560 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
194522 CTCTCTCTTC
194532 TATATATATATATAT
1 TATATATATATATAT
194547 TATATATATATATA
1 TATATATATATATA
194561 CACCAAGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATATATATATATAT
Found at i:199307 original size:34 final size:35
Alignment explanation
Indices: 199237--199310 Score: 89
Period size: 34 Copynumber: 2.1 Consensus size: 35
199227 CTACTGTTTG
* *
199237 TGAAAGAATAAGCACAAAGGAATACAAATGAGCTT
1 TGAAAGAATAAGCACAAAAGAATACAAAAGAGCTT
**
199272 TGAAAGAATAA-CA-ATAAAGAATACAAAAGCTCTT
1 TGAAAGAATAAGCACA-AAAGAATACAAAAGAGCTT
199306 TGAAA
1 TGAAA
199311 TATAGAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 1 0.03
34 22 0.65
35 11 0.32
ACGTcount: A:0.54, C:0.11, G:0.16, T:0.19
Consensus pattern (35 bp):
TGAAAGAATAAGCACAAAAGAATACAAAAGAGCTT
Found at i:199846 original size:21 final size:21
Alignment explanation
Indices: 199807--199846 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
199797 TTTGGATTAT
*
199807 TTTTTACTTGAAACCATATGA
1 TTTTTACTTGAAACAATATGA
199828 TTTTTATCTTGAAA-AATAT
1 TTTTTA-CTTGAAACAATAT
199847 TTATACTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.47
Consensus pattern (21 bp):
TTTTTACTTGAAACAATATGA
Found at i:200523 original size:25 final size:25
Alignment explanation
Indices: 200489--200541 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
200479 TTCTCCCTTT
*
200489 TTTCATCTCTCCCCCTTTTTACAAA
1 TTTCATCTCTCCCACTTTTTACAAA
*
200514 TTTCATCTCTCCCATTTTTTACAAA
1 TTTCATCTCTCCCACTTTTTACAAA
200539 TTT
1 TTT
200542 ATTTTCAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.21, C:0.30, G:0.00, T:0.49
Consensus pattern (25 bp):
TTTCATCTCTCCCACTTTTTACAAA
Found at i:202381 original size:33 final size:33
Alignment explanation
Indices: 202344--202409 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
202334 AATAGTACCC
202344 ATGTATCGATA-TAAAGAATGCAATATCAATACA
1 ATGTATCGATACT-AAGAATGCAATATCAATACA
*
202377 ATGTATCGATACTAAGAATGCAATATCGATACA
1 ATGTATCGATACTAAGAATGCAATATCAATACA
202410 TCCTGGAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (33 bp):
ATGTATCGATACTAAGAATGCAATATCAATACA
Found at i:203437 original size:26 final size:27
Alignment explanation
Indices: 203408--203459 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
203398 TCATTTTTGA
203408 TGGA-AAACGGGGTTGGAGTGTCCCCT
1 TGGAGAAACGGGGTTGGAGTGTCCCCT
* *
203434 TGGAGGAATGGGGTTGGAGTGTCCCC
1 TGGAGAAACGGGGTTGGAGTGTCCCC
203460 GGTGAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.17, C:0.17, G:0.42, T:0.23
Consensus pattern (27 bp):
TGGAGAAACGGGGTTGGAGTGTCCCCT
Found at i:205648 original size:52 final size:52
Alignment explanation
Indices: 205579--205698 Score: 213
Period size: 52 Copynumber: 2.3 Consensus size: 52
205569 AAAATTTATT
*
205579 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
* *
205631 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGTC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
205683 TGCATGTATCGATACA
1 TGCATGTATCGATACA
205699 AAGATCAGTG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
Found at i:205711 original size:52 final size:51
Alignment explanation
Indices: 205570--205718 Score: 201
Period size: 52 Copynumber: 2.9 Consensus size: 51
205560 CGAAATATGA
* *
205570 AAATTTATTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGTCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGC
* * *
205622 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGTCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGC
*
205674 AAATTTGTCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTGTCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
205719 ATGTATCGAT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 2 0.02
52 84 0.98
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (51 bp):
AAATTTGTCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGC
Found at i:205725 original size:13 final size:13
Alignment explanation
Indices: 205707--205731 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
205697 CAAAGATCAG
205707 TGTATCGATACAA
1 TGTATCGATACAA
205720 TGTATCGATACA
1 TGTATCGATACA
205732 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:205813 original size:33 final size:33
Alignment explanation
Indices: 205771--205840 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
205761 GGCAGTAGCT
205771 TACATTGTATCGATACAAAAAAATATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
* ***
205804 TACATTGTATCGATACAACATTTTATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
205837 TACA
1 TACA
205841 AATCGTTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (33 bp):
TACATTGTATCGATACAAAAAAATATGTATCGA
Found at i:205814 original size:13 final size:13
Alignment explanation
Indices: 205796--205820 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
205786 CAAAAAAATA
205796 TGTATCGATACAT
1 TGTATCGATACAT
205809 TGTATCGATACA
1 TGTATCGATACA
205821 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:206849 original size:49 final size:49
Alignment explanation
Indices: 206703--206860 Score: 147
Period size: 49 Copynumber: 3.1 Consensus size: 49
206693 AAAAGTGATA
* * * * *
206703 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--G
* ** * * *
206754 AAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG
1 ---AA-GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
206807 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-ATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
*
206855 ATGATG
1 AAGATG
206861 AGAAAAGTGA
Statistics
Matches: 85, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
48 8 0.09
49 37 0.44
50 2 0.02
53 1 0.01
54 2 0.02
55 35 0.41
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (49 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
Found at i:206920 original size:170 final size:166
Alignment explanation
Indices: 206639--207024 Score: 650
Period size: 170 Copynumber: 2.3 Consensus size: 166
206629 TTTTAGAGAT
*
206639 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT--AAAGATGAAAAAGTGAT
1 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAAAGATGAAAAAGTGAT
206702 AAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGATGTCA
66 AAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGATGTCA
206767 ACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
131 ACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
*
206803 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAATGATGATGAGAAAAG
1 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAA--A-GATGA-AAAAG
*
206868 TGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGAT
62 TGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGAT
206933 GTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
127 GTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
* *
206973 GATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GAT-GAAGA--TGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAA
207025 GGTGCCAATG
Statistics
Matches: 208, Mismatches: 5, Indels: 9
0.94 0.02 0.04
Matches are distributed among these distances:
164 44 0.21
166 2 0.01
168 1 0.00
169 5 0.02
170 112 0.54
171 4 0.02
173 40 0.19
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.25
Consensus pattern (166 bp):
GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAAAGATGAAAAAGTGAT
AAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGATGTCA
ACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
Found at i:207082 original size:49 final size:49
Alignment explanation
Indices: 206939--207745 Score: 1049
Period size: 49 Copynumber: 16.7 Consensus size: 49
206929 GGATGTCAAC
* *
206939 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAAT
* *
206991 ATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
*
207034 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
* * *
207083 ATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
* * *
207126 GTGCTGAGTCAAGGCCAGCTACATTGGACTTCAAGATGAAGATGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
* * *
207175 ATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
* *
207224 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
* * *
207273 ATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
*
207322 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAAT
* * * * *
207374 ATGCTGATTCAAGGCCAGCTATATTGGGCTTAGAGATAAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
* *
207423 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
* * *
207472 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAATGGTGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
* * *
207521 GTGCTGAGTCAAGGCCAACTACATTGGACTTAAAGATAAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
* *
207570 ATGCTGATTCAAGGCCAGCTATATTGGACTT--A-A--AA-GTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
207613 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
207662 GTGCTGAGTT-AAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAAT
1 GTGCTGA-TTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAAT
* * *
207714 ATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTA
207746 GAAGGGTTGC
Statistics
Matches: 666, Mismatches: 63, Indels: 52
0.85 0.08 0.07
Matches are distributed among these distances:
43 113 0.17
44 2 0.00
45 2 0.00
46 2 0.00
47 3 0.00
48 3 0.00
49 427 0.64
50 4 0.01
51 2 0.00
52 108 0.16
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
Found at i:207466 original size:248 final size:239
Alignment explanation
Indices: 206940--207745 Score: 1027
Period size: 248 Copynumber: 3.3 Consensus size: 239
206930 GATGTCAACG
* * * * *
206940 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAGG
* * * * *
207005 CCAGCTATATTGGACTT-AA-A-G--G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
63 CCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGAGTCAAGGCCAACGACATTGGACT
* * * * *
207064 TAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGGTGCCAATGT
128 TAAAGATAAAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGGTGCCAATGT
* *
207128 GCTGAGTCAAGGCCAGCTACATTGGACTTCAAGATGAAGATGCCAATA
193 GCTGATTCAAGGCCAGCTACATTGGACTT-AAGATGAAGGTGCCAATA
*
207176 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCA
* * *
207241 GCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAA
66 GCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGAGTCAAGGCCAACGACATTGGACTTAA
* *
207306 AGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCC
131 AGATAAAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGAC-T-----T--AAAAGGTGCC
* * * *
207371 AATATGCTGATTCAAGGCCAGCTATATTGGGCTTAGAGATAAAGGTGCCAATA
188 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTA-AGATGAAGGTGCCAATA
207424 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCA
* * * * *
207489 GCTACATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAACTACATTGGACTTAA
66 GCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGAGTCAAGGCCAACGACATTGGACTTAA
* *
207554 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAA-GTGCCAATGTGCT
131 AGATAAAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGGTGCCAATGTGCT
*
207618 GATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATG
196 GATTCAAGGCCAGCTACATTGGACTT-AAGATGAAGGTGCCAATA
* * *
207663 TGCTGAGTT-AAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAG
1 TGCTGA-TTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAG
* *
207727 GCCAGCTATATTGGGCTTA
62 GCCAGCTACATTGGACTTA
207746 GAAGGGTTGC
Statistics
Matches: 505, Mismatches: 44, Indels: 36
0.86 0.08 0.06
Matches are distributed among these distances:
233 38 0.08
234 2 0.00
235 2 0.00
236 34 0.07
238 1 0.00
239 160 0.32
240 9 0.02
242 40 0.08
245 1 0.00
247 2 0.00
248 216 0.43
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (239 bp):
TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCA
GCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGAGTCAAGGCCAACGACATTGGACTTAA
AGATAAAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGGTGCCAATGTGCT
GATTCAAGGCCAGCTACATTGGACTTAAGATGAAGGTGCCAATA
Found at i:207789 original size:33 final size:34
Alignment explanation
Indices: 207745--207846 Score: 174
Period size: 32 Copynumber: 3.1 Consensus size: 34
207735 TATTGGGCTT
207745 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGGA
207779 AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGGA
1 AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGGA
207813 AG-A-GTTGCCACCGACTTGTGTGGGCTTTAGGA
1 AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGGA
207845 AG
1 AG
207847 GGAAAAAGAT
Statistics
Matches: 67, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
32 31 0.46
33 27 0.40
34 9 0.13
ACGTcount: A:0.20, C:0.18, G:0.36, T:0.26
Consensus pattern (34 bp):
AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGGA
Found at i:207903 original size:35 final size:33
Alignment explanation
Indices: 207848--208209 Score: 360
Period size: 34 Copynumber: 10.7 Consensus size: 33
207838 TTTAGGAAGG
* * *
207848 GAAAAAGATGCCACGAAGTTGTGGACTTAAAAA
1 GAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAA
* *
207881 GGTAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
1 -GAAAAAG-GTGCCACGGAGTTGTGGGCTTAAAAA
* *
207916 GAAAAAGGTGCCACAGAGTTGTGGGCTTTGAAAAG
1 GAAAAAGGTGCCACGGAGTTGTGGGC-TT-AAAAA
* *
207951 GAAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAA
1 G-AAAAAG-GTGCCACGGAGTTGTGGGCTTAAAAA
*
207986 GAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGG
1 GAAAAAGGTGCCACGGAGTTGTGGGC-TT-AAAA-A
*
208022 GAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAA
1 GAAAAAG-GTGCCACGGAGTTGTGGGC-TTAAAAA
*
208057 GAAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA
1 G-AAAAAGGTGCCACGGAGTTGTGGGC-TTAAAAA
* *
208092 GAAGAAGGTGCCACGGAGTTGTGGGCTT-AAAC
1 GAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAA
* *
208124 G-----GGTGCCACGGAGTTGTGGACTTAAAGAC
1 GAAAAAGGTGCCACGGAGTTGTGGGCTTAAA-AA
* * *
208153 GAATTAA-GTGCCACGGAATTGTGGGCTTTAAAA
1 GAA-AAAGGTGCCACGGAGTTGTGGGCTTAAAAA
*
208186 GAAAAAGGTGCCACAGAGTTGTGG
1 GAAAAAGGTGCCACGGAGTTGTGG
208210 ACTTTGAGAA
Statistics
Matches: 281, Mismatches: 28, Indels: 39
0.81 0.08 0.11
Matches are distributed among these distances:
27 21 0.07
28 2 0.01
29 3 0.01
32 6 0.02
33 57 0.20
34 67 0.24
35 60 0.21
36 25 0.09
37 40 0.14
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.20
Consensus pattern (33 bp):
GAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAA
Found at i:207922 original size:34 final size:34
Alignment explanation
Indices: 207848--208214 Score: 386
Period size: 33 Copynumber: 10.9 Consensus size: 34
207838 TTTAGGAAGG
* * *
207848 GAAAAAGA-TGCCACGAAGTTGTGGACTTAAAAA
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
*
207881 GGTAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
1 -GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
*
207916 GAAAAAG-GTGCCACAGAGTTGTGGGCTTTGAAAA
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA
*
207950 GGAAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAA
1 -G-AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
207986 GAAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAA
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA
*
208020 GGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAA
1 --GAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA
208057 GAAAAA-AGGTGCCACGGAGTTGTGGGCTTTGAAAA
1 GAAAAAGA-GTGCCACGGAGTTGTGGGCTTT-AAAA
* *
208092 GAAGAAG-GTGCCACGGAGTTGTGGGC-TTAAAC
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
*
208124 G-----G-GTGCCACGGAGTTGTGGAC-TTAAAGA
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A
** *
208152 CGAATTA-AGTGCCACGGAATTGTGGGCTTTAAAA
1 -GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
* *
208186 GAAAAAG-GTGCCACAGAGTTGTGGACTTT
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTT
208215 GAGAAGAGAT
Statistics
Matches: 290, Mismatches: 22, Indels: 43
0.82 0.06 0.12
Matches are distributed among these distances:
27 24 0.08
29 1 0.00
32 4 0.01
33 67 0.23
34 65 0.22
35 65 0.22
36 17 0.06
37 47 0.16
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (34 bp):
GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
Found at i:207975 original size:70 final size:69
Alignment explanation
Indices: 207848--208216 Score: 456
Period size: 70 Copynumber: 5.4 Consensus size: 69
207838 TTTAGGAAGG
* * * *
207848 GAAAAAGATGCCACGAAGTTGTGGAC-TTAAAAAGGTAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
207912 AAAA
66 AAAA
* * *
207916 GAAAAAGGTGCCACAGAGTTGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAGAGTTGTGGGCTT
1 GAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGG-AAAAAGAGTGCCACGGAGTTGTGGGCTT
207981 TAAAA
65 TAAAA
* *
207986 GAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTT
1 GAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTT
208051 TAAAAA
65 T-AAAA
* *
208057 GAAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA-GAAGAAG-GTGCCACGGAGTTGTGGGC-T
1 G-AAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
*
208119 TAAAC
65 TAAAA
* ** *
208124 G-----GGTGCCACGGAGTTGTGGAC-TT-AAAGACGAATTA-AGTGCCACGGAATTGTGGGCTT
1 GAAAAAGGTGCCACGGAGTTGTGGACTTTGAAA-AGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
208181 TAAAA
65 TAAAA
*
208186 GAAAAAGGTGCCACAGAGTTGTGGACTTTGA
1 GAAAAAGGTGCCACGGAGTTGTGGACTTTGA
208217 GAAGAGATTG
Statistics
Matches: 268, Mismatches: 17, Indels: 31
0.85 0.05 0.10
Matches are distributed among these distances:
59 3 0.01
60 3 0.01
61 41 0.15
62 6 0.02
67 23 0.09
68 26 0.10
69 27 0.10
70 99 0.37
71 7 0.03
72 33 0.12
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.21
Consensus pattern (69 bp):
GAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
AAAA
Found at i:208133 original size:61 final size:61
Alignment explanation
Indices: 208064--208180 Score: 159
Period size: 61 Copynumber: 1.9 Consensus size: 61
208054 AAAGAAAAAA
* *
208064 GGTGCCACGGAGTTGTGGGCTTTGAAA-A-GAA-GAAGGTGCCACGGAGTTGTGGGCTTAAACG
1 GGTGCCACGGAGTTGTGGAC-TT-AAAGACGAATGAA-GTGCCACGGAATTGTGGGCTTAAACG
*
208125 GGTGCCACGGAGTTGTGGACTTAAAGACGAATTAAGTGCCACGGAATTGTGGGCTT
1 GGTGCCACGGAGTTGTGGACTTAAAGACGAATGAAGTGCCACGGAATTGTGGGCTT
208181 TAAAAGAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
59 3 0.06
60 3 0.06
61 42 0.84
62 2 0.04
ACGTcount: A:0.25, C:0.15, G:0.37, T:0.23
Consensus pattern (61 bp):
GGTGCCACGGAGTTGTGGACTTAAAGACGAATGAAGTGCCACGGAATTGTGGGCTTAAACG
Found at i:208136 original size:27 final size:27
Alignment explanation
Indices: 208098--208149 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
208088 AAAAGAAGAA
*
208098 GGTGCCACGGAGTTGTGGGCTTAAACG
1 GGTGCCACGGAGTTGTGGACTTAAACG
208125 GGTGCCACGGAGTTGTGGACTTAAA
1 GGTGCCACGGAGTTGTGGACTTAAA
208150 GACGAATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.38, T:0.23
Consensus pattern (27 bp):
GGTGCCACGGAGTTGTGGACTTAAACG
Found at i:209205 original size:16 final size:15
Alignment explanation
Indices: 209180--209209 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
209170 TTTTCCTCTC
209180 TTTTTTTCTTTTTTG
1 TTTTTTTCTTTTTTG
209195 TTTTGTTTCTTTTTT
1 TTTT-TTTCTTTTTT
209210 TGGAAAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.87
Consensus pattern (15 bp):
TTTTTTTCTTTTTTG
Found at i:213252 original size:79 final size:79
Alignment explanation
Indices: 213163--213412 Score: 290
Period size: 79 Copynumber: 3.2 Consensus size: 79
213153 ATAAAGACGG
* * * * * *
213163 GGTTGAAGTATCCTTTCAAAAATAACGGGGCTGGAGTAACTCCGATTATGGAAAATTGGTGTTTT
1 GGTTGGAGTATCCTTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTT
213228 GAAAATAAAATCGA
66 GAAAATAAAATCGA
* ** * * * *
213242 GGTTGGAGTATCCCTTT-GAAAATCATAGGGTTAGAGTATCCCCGATTGTGAAAAATCGGTATTT
1 GGTTGGAGTAT-CCTTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTT
213306 T-AGAAATAAAATC-A
65 TGA-AAATAAAATCGA
* * * *
213320 GGGTTAGAGTATCCTCTCGAAAATAACGGGGTTGGAGTATCCCCGATGATGAAAAATTGATGTTT
1 -GGTTGGAGTATCCTTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTT
*
213385 TGAAAATAAAATCGG
65 TGAAAATAAAATCGA
213400 GGTTGGAGTATCC
1 GGTTGGAGTATCC
213413 CCGATGATGA
Statistics
Matches: 139, Mismatches: 26, Indels: 12
0.79 0.15 0.07
Matches are distributed among these distances:
78 6 0.04
79 127 0.91
80 6 0.04
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (79 bp):
GGTTGGAGTATCCTTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTT
GAAAATAAAATCGA
Found at i:213411 original size:51 final size:51
Alignment explanation
Indices: 213346--213463 Score: 209
Period size: 51 Copynumber: 2.3 Consensus size: 51
213336 TCGAAAATAA
*
213346 CGGGGTTGGAGTATCCCCGATGATGAAAAATTGATGTTTTGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATGATGAAAAACTGATGTTTTGAAAATAAAAT
*
213397 CGGGGTTGGAGTATCCCCGATGATGAAAAACTGATGTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATGATGAAAAACTGATGTTTTGAAAATAAAAT
*
213448 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
213464 TCTCAGAAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATGATGAAAAACTGATGTTTTGAAAATAAAAT
Found at i:213416 original size:130 final size:130
Alignment explanation
Indices: 213269--213542 Score: 333
Period size: 130 Copynumber: 2.1 Consensus size: 130
213259 GAAAATCATA
*
213269 GGGTTAGAGTATCCCCGATTG-TGAAAAA-TCGGTATTTTAGAAATAAAATC-AGGGTTAGAGTA
1 GGGTTAGAGTATCCCCGA-TGATGAAAAACT-GATATTTTAGAAATAAAATCGA-GGTTAGAGTA
** * *
213331 TCCTCTC-GAAAATAACGGGGTTGGAGTATCCCCGA-TGATGAAAAATTGATGTTTTGAAAATAA
63 TCCTCTCAG-AAATAAAAGGGTTAGAGTATCCCCGATTG-TGAAAAATTGATATTTTGAAAATAA
*
213394 AATCG
126 AACCG
* * * *
213399 GGGTTGGAGTATCCCCGATGATGAAAAACTGATGTTTTGGAAATAAAATCGAGGTTGGAGTATCC
1 GGGTTAGAGTATCCCCGATGATGAAAAACTGATATTTTAGAAATAAAATCGAGGTTAGAGTATCC
* * * *
213464 TCTCAGAAATAAAAGGGTTAGAGTATCTCTGATTGTGAAAAATTGGTATTTTGGAAATAAAACCG
66 TCTCAGAAATAAAAGGGTTAGAGTATCCCCGATTGTGAAAAATTGATATTTTGAAAATAAAACCG
*
213529 GGATTAGAGTATCC
1 GGGTTAGAGTATCC
213543 TCTCAAAAAT
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
129 2 0.02
130 116 0.94
131 5 0.04
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.29
Consensus pattern (130 bp):
GGGTTAGAGTATCCCCGATGATGAAAAACTGATATTTTAGAAATAAAATCGAGGTTAGAGTATCC
TCTCAGAAATAAAAGGGTTAGAGTATCCCCGATTGTGAAAAATTGATATTTTGAAAATAAAACCG
Found at i:213482 original size:79 final size:77
Alignment explanation
Indices: 213399--213866 Score: 375
Period size: 79 Copynumber: 6.0 Consensus size: 77
213389 AATAAAATCG
* *
213399 GGGTTGGAGTATCCCCGATGATGAAAAACTGATGTTTTGGAAATAAAATCGAGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATGATGAAAAATTGATGTTTTGGAAATAAAATCGAGGTTAGAGTATCC
213464 TCTCAGAAATAAAA
66 -CTCAGAAAT-AAA
* * * * * *
213478 GGGTTAGAGTATCTCTGATTG-TGAAAAATTGGTATTTTGGAAATAAAACCG-GGATTAGAGTAT
1 GGGTTGGAGTATCCCCGA-TGATGAAAAATTGATGTTTTGGAAATAAAATCGAGG-TTAGAGTAT
* *
213541 CCTCTCAAAAATAAC
64 CC-CTCAGAAATAAA
* * * * * *
213556 GAGGTTGGAGTATCTCCGATTG-TGAAAATTTGGTGTTTTGAAAATAAAATCGGGGTTTGAGTAT
1 G-GGTTGGAGTATCCCCGA-TGATGAAAAATTGATGTTTTGGAAATAAAATCGAGGTTAGAGTAT
* *
213620 CCCCTCGGAAATAAT
64 -CCCTCAGAAATAAA
* * * * *
213635 GAGGTTGGAGTATCCCCGATTATGAAAAATT-AGTATTTTGGAAATAAAATTGGGGTTTGAGTAT
1 G-GGTTGGAGTATCCCCGATGATGAAAAATTGA-TGTTTTGGAAATAAAATCGAGGTTAGAGTA-
213699 TCCCTC-GAAAATAAGA
63 TCCCTCAG-AAATAA-A
* * * * *
213715 GGATTGGAGTAT-CCCGATTATGAAAAATTGGTGTTTTGGAAATAAAA-CAAGGGTT-GAAGCAT
1 GGGTTGGAGTATCCCCGATGATGAAAAATTGATGTTTTGGAAATAAAATCGA-GGTTAG-AGTAT
* * *
213777 TCCTCAAAAATAAC
64 CCCTCAGAAATAAA
* * *
213791 GGAGTTGGAGCATCCCC---GATGAAAAATT-AGTGTTTTGAAAATAAAACCGAGGTTAGAGTAT
1 GG-GTTGGAGTATCCCCGATGATGAAAAATTGA-TGTTTTGGAAATAAAATCGAGGTTAGAGTAT
*
213852 CCCCTCGGAAATAAA
64 -CCCTCAGAAATAAA
213867 AACATAAATG
Statistics
Matches: 320, Mismatches: 49, Indels: 43
0.78 0.12 0.10
Matches are distributed among these distances:
75 33 0.10
76 15 0.05
77 20 0.06
78 49 0.15
79 195 0.61
80 8 0.03
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (77 bp):
GGGTTGGAGTATCCCCGATGATGAAAAATTGATGTTTTGGAAATAAAATCGAGGTTAGAGTATCC
CTCAGAAATAAA
Found at i:213554 original size:209 final size:209
Alignment explanation
Indices: 213188--213623 Score: 617
Period size: 209 Copynumber: 2.1 Consensus size: 209
213178 TCAAAAATAA
* * * * * * *
213188 CGGGGCTGGAGTAACTCCGATTATGGAAAATTGGTGTTTTGAAAATAAAATCGAGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATGATGAAAAACTGATGTTTTGAAAATAAAATCGAGGTTGGAGTAT
** * *
213253 CCCTTTGAAAATCATAGGGTTAGAGTATCCCCGATTGTGAAAAATCGGTATTTTAGAAATAAAAT
66 CCCTCAGAAAATAAAAGGGTTAGAGTATCCCCGATTGTGAAAAATCGGTATTTTAGAAATAAAAT
* *
213318 CAGGGTTAGAGTATCCTCTCGAAAATAACGGGGTTGGAGTATCCCCGA-TGATGAAAAATTGATG
131 CAGGGTTAGAGTATCCTCTCAAAAATAACGAGGTTGGAGTATCCCCGATTG-TGAAAAATTGATG
213382 TTTTGAAAATAAAAT
195 TTTTGAAAATAAAAT
*
213397 CGGGGTTGGAGTATCCCCGATGATGAAAAACTGATGTTTTGGAAATAAAATCGAGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATGATGAAAAACTGATGTTTTGAAAATAAAATCGAGGTTGGAGTAT
* * * *
213462 CCTCTCAG-AAATAAAAGGGTTAGAGTATCTCTGATTGTGAAAAATTGGTATTTTGGAAATAAAA
66 CC-CTCAGAAAATAAAAGGGTTAGAGTATCCCCGATTGTGAAAAATCGGTATTTTAGAAATAAAA
* * * *
213526 -CCGGGATTAGAGTATCCTCTCAAAAATAACGAGGTTGGAGTATCTCCGATTGTGAAAATTTGGT
130 TCAGGG-TTAGAGTATCCTCTCAAAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTGAT
213590 GTTTTGAAAATAAAAT
194 GTTTTGAAAATAAAAT
*
213606 CGGGGTTTGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
213624 TCGGAAATAA
Statistics
Matches: 201, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
208 4 0.02
209 192 0.96
210 5 0.02
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (209 bp):
CGGGGTTGGAGTATCCCCGATGATGAAAAACTGATGTTTTGAAAATAAAATCGAGGTTGGAGTAT
CCCTCAGAAAATAAAAGGGTTAGAGTATCCCCGATTGTGAAAAATCGGTATTTTAGAAATAAAAT
CAGGGTTAGAGTATCCTCTCAAAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTGATGT
TTTGAAAATAAAAT
Found at i:213601 original size:158 final size:156
Alignment explanation
Indices: 213400--213857 Score: 477
Period size: 158 Copynumber: 2.9 Consensus size: 156
213390 ATAAAATCGG
* *
213400 GGTTGGAGTATCCCCGA-TGATGAAAAACTGATGTTTTGGAAATAAAATCGAGGTTGGAGTATCC
1 GGTTGGAGTAT-CCCGATTG-TGAAAAATTGGTGTTTTGGAAATAAAATCGAGGTTGGAGTATCC
* * * * *
213464 TCTCAGAAATAAA-AGGGTTAGAGTATCTCTGATTGTGAAAAATTGGTATTTTGGAAATAAAACC
64 CCTCAGAAATAAAGA-GGTTAGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAACC
213528 GGGATTAGAGTA-TCCTCTCAAAAATAACGA
128 GGGATTAGAGTATTCC-CTCAAAAATAA-GA
* * * *
213558 GGTTGGAGTATCTCCGATTGTGAAAATTTGGTGTTTTGAAAATAAAATCGGGGTTTGAGTATCCC
1 GGTTGGAGTATC-CCGATTGTGAAAAATTGGTGTTTTGGAAATAAAATCGAGGTTGGAGTATCCC
* * * **
213623 CTCGGAAATAATGAGGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAATTGG
65 CTCAGAAATAAAGAGGTTAGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAACCGG
* * *
213688 GGTTTGAGTATTCCCTCGAAAATAAGA
130 GATTAGAGTATTCCCTCAAAAATAAGA
* * * * *
213715 GGATTGGAGTATCCCGATTATGAAAAATTGGTGTTTTGGAAATAAAA-CAAGGGTTGAAGCAT-T
1 GG-TTGGAGTATCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAAATCGA-GGTTGGAGTATCC
* * * * * *
213778 CCTCAAAAATAACG-GAGTTGGAGCATCCCCG---ATGAAAAATTAGTGTTTTGAAAATAAAACC
64 CCTCAGAAATAAAGAG-GTTAGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAACC
*
213839 GAGG-TTAGAGTATCCCCTC
128 G-GGATTAGAGTATTCCCTC
213858 GGAAATAAAA
Statistics
Matches: 254, Mismatches: 38, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
153 40 0.16
154 2 0.01
155 1 0.00
156 26 0.10
157 44 0.17
158 135 0.53
159 6 0.02
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (156 bp):
GGTTGGAGTATCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAAATCGAGGTTGGAGTATCCCC
TCAGAAATAAAGAGGTTAGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAACCGGG
ATTAGAGTATTCCCTCAAAAATAAGA
Found at i:216990 original size:44 final size:42
Alignment explanation
Indices: 216898--216997 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 42
216888 GAGTACATCT
*
216898 TGCT-TTTCGAGGACAAAGGAAAAAAGAAAATAAAATGCGTCT
1 TGCTCTTT-GAGGACAAAGGAAAAAAGAAAATAAAATGCGTCA
* *
216940 TGCTCTTTGAGGACAAAGGAAAAAAAGGAAATTAAA-GCGTGTCA
1 TGCTCTTTGAGGACAAAGG-AAAAAAGAAAATAAAATGC--GTCA
*
216984 TGCTCTTTGGGGAC
1 TGCTCTTTGAGGAC
216998 TAGAAGGTGC
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
42 17 0.34
43 17 0.34
44 16 0.32
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.23
Consensus pattern (42 bp):
TGCTCTTTGAGGACAAAGGAAAAAAGAAAATAAAATGCGTCA
Found at i:217070 original size:59 final size:59
Alignment explanation
Indices: 216984--218324 Score: 1460
Period size: 59 Copynumber: 22.3 Consensus size: 59
216974 AAGCGTGTCA
* * *
216984 TGCTCTTTGGGGACTAGAAGGTGCCACCAACTTATGTGGGCTTTGAAAGGAAAGTGTCC
1 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGCGTCC
* *
217043 TGCTCTTTGAGGACTAGAAGATGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGCATCC
1 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGCGTCC
* *
217102 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTGAAAGGAAAACGTCC
1 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGCGTCC
* * *
217161 TGCTCTTTGAGGACTAGAAGGTGCCACTAACTTGTATGGGCTTTGAAAGGAAAGCATCC
1 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGCGTCC
* * * *
217220 TGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTATAGGCTTTGAAAGGAAAAGATC-TCT
1 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAAG--CGTCC
* ** * * *
217281 TACTCTTAAAGGACTA-ATAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGCATCT
1 TGCTCTTTGAGGACTAGA-AGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGCGTCC
* *
217340 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAACATCC
1 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGCGTCC
* * *
217399 TGCTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCC
1 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAA-GCGTCC
* * * * * *
217460 TGCTTTTTAAGGACT-GACAGGTGCCACCAAATTGTGTGAGCATTAAAAGGAAAAAGCGTCC
1 TGCTCTTTGAGGACTAGA-AGGTGCCACCAACTTGTGTGGGCTTTGAAAGG--AAAGCGTCC
* * *
217521 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGATAAGGCATCT
1 TGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGA-AA-GCGTCC
* * **
217582 TGCTCTTTGATGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGCAAAATGTCC
1 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGCGTCC
* * * * * *
217641 TGCTCTTTGAAGACTGGAAGATGCCACCAACTTGTGTGGGCTTCGAAAGGAAAAGGCATCT
1 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAA-GCGTCC
* * * * * *
217702 TGCTCTTTGAGGA-TTGACAAGTGCCAGCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTAGA-AGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAA-GCGTCC
* * *
217763 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAGAAGATGTCC
1 TGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGA-AAG-CGTCC
* * **
217824 TACTCTTTGAGGACTAGAAGGTGTCACCAACTTGTGTGGGCTTTGAAAGGAAAATG-CC
1 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGCGTCC
* * * *
217882 TTACTCCTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCC
1 -TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAA-GCGTCC
* ** * * * *
217944 TGCTCTTTGAGGACTAAAAGGTGCCACCAGTTTATGTAGGCTTTAAAAGTAGAAGGCAGTCC
1 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG--GAAAGC-GTCC
* * * *
218006 TGCTCTTTGAGGATTGGAAGGTGCCACCAACTTGTATGGGCTTTGAAAGGAAAACGTCC
1 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGCGTCC
* * * * *
218065 TACTTTTTTAGGATTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAA-GCGTCC
* * * *
218126 TGCTCTTTGAGGACT-GACAGATGCCACCAACTTGTGT-GGCTTTAAAACGAAAAGGCATCC
1 TGCTCTTTGAGGACTAGA-AGGTGCCACCAACTTGTGTGGGCTTTGAAA-GGAAA-GCGTCC
* * * * *
218186 TACCCTTTGAGGACT-GAAAGGTGCCACCAACTTTTGTGGGCTTTAAAAGAAGAAGGCGTCC
1 TGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAG--GAAAGCGTCC
* * * *
218247 TACTCTTTGAGTATTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAGGGCGTCC
1 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGG-AAA--GCGTCC
218310 TGCTCTTTGAGGACT
1 TGCTCTTTGAGGACT
218325 GAAAGGATAA
Statistics
Matches: 1098, Mismatches: 142, Indels: 80
0.83 0.11 0.06
Matches are distributed among these distances:
58 3 0.00
59 460 0.42
60 93 0.08
61 459 0.42
62 64 0.06
63 19 0.02
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (59 bp):
TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGCGTCC
Found at i:217312 original size:61 final size:58
Alignment explanation
Indices: 216984--218330 Score: 1350
Period size: 61 Copynumber: 22.3 Consensus size: 58
216974 AAGCGTGTCA
* * *
216984 TGCTCTTTGGGGACTAGAAGGTGCCACCAACTTATGTGGGCTTTGAAAGG-AAAGTGTCC
1 TGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAG-ATCC
*
217043 TGCTCTTTGAGGACTAGAAGATGCCACCAACTTGTGTGGGCTTTGAAAGG-AAAGCATCC
1 TGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAG-ATCC
*
217102 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTGAAAGGAAAACG-TCC
1 TGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAA-GATCC
* *
217161 TGCTCTTTGAGGACTAGAAGGTGCCACTAACTTGTATGGGCTTTGAAAGG-AAAGCATCC
1 TGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAG-ATCC
* * *
217220 TGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTATAGGCTTTGAAAGGAAAAGATCTC
1 TGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGATC-C
* ** * *
217280 TTACTCTTAAAGGACTAATAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG-AAAGCATCT
1 -TGCTCTTTGAGGACTAA-AGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAG-ATCC
*
217340 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAACATCC
1 TGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGATCC
* * *
217399 TGCTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCC
1 TGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAA-G-ATCC
* * * * * * * *
217460 TGCTTTTTAAGGACTGACAGGTGCCACCAAATTGTGTGAGCATTAAAAGGAAAAAGCGTCC
1 TGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAAAG-ATCC
* * *
217521 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGATAAGGCATCT
1 TGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGA-AAAG-ATCC
* *
217582 TGCTCTTTGATGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGCAAAATG-TCC
1 TGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAA-GATCC
* * * * *
217641 TGCTCTTTGAAGACTGGAAGATGCCACCAACTTGTGTGGGCTTCGAAAGGAAAAGGCATCT
1 TGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAA-G-ATCC
* * * *
217702 TGCTCTTTGAGGATTGACAA-GTGCCAGCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACT-A-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAA-G-ATCC
* * *
217763 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAGAAGATGTCC
1 TGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGA--TCC
* *
217824 TACTCTTTGAGGACTAGAAGGTGTCACCAACTTGTGTGGGCTTTGAAAGG-AAA-ATGCC
1 TGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGAT-CC
* * * *
217882 TTACTCCTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCC
1 -TGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAA-G-ATCC
** * * * * *
217944 TGCTCTTTGAGGACTAAAAGGTGCCACCAGTTTATGTAGGCTTTAAAAGTAGAAGGCAGTCC
1 TGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGA-AAAG-A-TCC
* * *
218006 TGCTCTTTGAGGATTGGAAGGTGCCACCAACTTGTATGGGCTTTGAAAGGAAAACG-TCC
1 TGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAA-GATCC
* * * *
218065 TACTTTTTTAGGATTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAA-G-ATCC
* * * *
218126 TGCTCTTTGAGGACTGACAGATGCCACCAACTTGTGT-GGCTTTAAAACGAAAAGGCATCC
1 TGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAA-G-ATCC
* * * * *
218186 TACCCTTTGAGGACTGAAAGGTGCCACCAACTTTTGTGGGCTTT-AAAAGAAGAAGGCGTCC
1 TGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAA-AA-G-ATCC
* * * *
218247 TACTCTTTGAGTATTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAGGGCGTCC
1 TGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGGAAAA--G-ATCC
218310 TGCTCTTTGAGGACTGAAAGG
1 TGCTCTTTGAGGACT-AAAGG
218331 ATAAAAGGTT
Statistics
Matches: 1105, Mismatches: 138, Indels: 86
0.83 0.10 0.06
Matches are distributed among these distances:
57 2 0.00
58 5 0.00
59 456 0.41
60 89 0.08
61 464 0.42
62 58 0.05
63 31 0.03
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (58 bp):
TGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGATCC
Found at i:217644 original size:242 final size:239
Alignment explanation
Indices: 216984--218324 Score: 1621
Period size: 242 Copynumber: 5.6 Consensus size: 239
216974 AAGCGTGTCA
* * * *
216984 TGCTCTTTGGGGACTAGAAGGTGCCACCAACTTATGTGGGCTTTGAAAGG--AAAGTGTCCTGCT
1 TGCTCTTTGAGGACT-GAAGGTGCCACCAACTTATGTGAGCTTTAAAAGGAAAAAGCGTCCTGCT
* *
217047 CTTTGAGGACT-AGAAGATGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGCATCCTGCTCTTTG
65 CTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGCATCCTGCTCTTTG
*
217111 AGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTGAAAGGAAAACGTCCTGCTCTTTGAGGACT
129 AGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAACGTCCTGCTCTTTGAGGACT
* * *
217176 AGAAGGTGCCACTAACTTGTATGGGCTTTGAAAGG-AAA-GCATCC
194 GGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
* * * * * * *
217220 TGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTAT-AGGCTTTGAAAGGAAAAGATC-TCTTA
1 TGCTCTTTGAGGACT-GAAGGTGCCACCAACTTATGTGA-GCTTTAAAAGGAAAA-AGCGTCCTG
** *
217283 CTCTTAAAGGACT-AATAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGCATCTTGCTCTT
63 CTCTTTGAGGACTGAA-AGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGCATCCTGCTCTT
*
217347 TGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAACATCCTGCTCTTTGAGGA
127 TGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAACGTCCTGCTCTTTGAGGA
* **
217412 TTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCC
192 CTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
* * * * *
217460 TGCTTTTTAAGGACTGACAGGTGCCACCAAATTGTGTGAGCATTAAAAGGAAAAAGCGTCCTGCT
1 TGCTCTTTGAGGACTGA-AGGTGCCACCAACTTATGTGAGCTTTAAAAGGAAAAAGCGTCCTGCT
*
217525 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGATAAGGCATCTTGCTCTTT
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AA-GCATCCTGCTCTTT
* * * *
217590 GATGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGCAAAATGTCCTGCTCTTTGAAGAC
128 GAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAACGTCCTGCTCTTTGAGGAC
* * *
217655 TGGAAGATGCCACCAACTTGTGTGGGCTTCGAAAGGAAAAGGCATCT
193 TGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
* * * * * *
217702 TGCTCTTTGAGGATTGACAAGTGCCAGCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCCTGCT
1 TGCTCTTTGAGGACTGA-AGGTGCCACCAACTTATGTGAGCTTTAAAAGGAAAAAGCGTCCTGCT
* *
217767 CTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAGAAG-ATGTCCTACTCTT
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAGCA--TCCTGCTCTT
* * * *
217831 TGAGGACTAGAAGGTGTCACCAACTTGTGTGGGCTTTGAAAGGAAAATG-CCTTACTCCTTGAGG
127 TGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAACGTCC-TGCTCTTTGAGG
**
217895 ACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCC
191 ACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
* ** * * *
217944 TGCTCTTTGAGGACTAAAAGGTGCCACCAGTTTATGT-AGGCTTTAAAAGTAGAAGGCAGTCCTG
1 TGCTCTTTGAGGACT-GAAGGTGCCACCAACTTATGTGA-GCTTTAAAAGGAAAAAGC-GTCCTG
* * * * * * * *
218008 CTCTTTGAGGATTGGAAGGTGCCACCAACTTGTATGGGCTTTGAAAGGAAAACGTCCTACTTTTT
63 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGCATCCTGCTCTTT
* * *
218073 TAGGATTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCCTGCTCTTTGAGG
128 GAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAA--CGTCCTGCTCTTTGAGG
* * *
218138 ACT-GACAGATGCCACCAACTTGTGT-GGCTTTAAAACGAAAAGGCATCC
191 ACTGGA-AGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
* * * * * *
218186 TACCCTTTGAGGACTGAAAGGTGCCACCAACTTTTGTGGGCTTTAAAA-GAAGAAGGCGTCCTAC
1 TGCTCTTTGAGGACTG-AAGGTGCCACCAACTTATGTGAGCTTTAAAAGGAA-AAAGCGTCCTGC
* * * *
218250 TCTTTGAGTATTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAGGGCGTCCTGCTC
64 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGG-AAA--GCATCCTGCTC
218315 TTTGAGGACT
125 TTTGAGGACT
218325 GAAAGGATAA
Statistics
Matches: 955, Mismatches: 119, Indels: 53
0.85 0.11 0.05
Matches are distributed among these distances:
236 44 0.05
237 1 0.00
238 158 0.17
239 8 0.01
240 94 0.10
241 105 0.11
242 441 0.46
243 86 0.09
244 2 0.00
245 16 0.02
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (239 bp):
TGCTCTTTGAGGACTGAAGGTGCCACCAACTTATGTGAGCTTTAAAAGGAAAAAGCGTCCTGCTC
TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGCATCCTGCTCTTTGAG
GACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAACGTCCTGCTCTTTGAGGACTGG
AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
Found at i:219322 original size:14 final size:16
Alignment explanation
Indices: 219303--219338 Score: 58
Period size: 14 Copynumber: 2.4 Consensus size: 16
219293 TAAGCAGGTT
219303 TTTTTTCTTT-T-CTC
1 TTTTTTCTTTGTCCTC
219317 TTTTTTCTTTGTCCTC
1 TTTTTTCTTTGTCCTC
219333 TTTTTT
1 TTTTTT
219339 TTGTTGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 10 0.50
15 1 0.05
16 9 0.45
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (16 bp):
TTTTTTCTTTGTCCTC
Found at i:219337 original size:1 final size:1
Alignment explanation
Indices: 219333--219389 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
219323 CTTTGTCCTC
* * * * * * *
219333 TTTTTTTTGTTGTTTTTTTTGTTTTTTGTTGTTTTTTTGTTTTTGTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
219390 GTTAAGAAAA
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (1 bp):
T
Found at i:219357 original size:19 final size:19
Alignment explanation
Indices: 219335--219387 Score: 85
Period size: 17 Copynumber: 2.9 Consensus size: 19
219325 TTGTCCTCTT
219335 TTTTTTGTTGTTTTTTTTG
1 TTTTTTGTTGTTTTTTTTG
219354 TTTTTTGTTG-TTTTTTTG
1 TTTTTTGTTGTTTTTTTTG
219372 -TTTTTGTT-TTTTTTTT
1 TTTTTTGTTGTTTTTTTT
219388 TTGTTAAGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.45
18 8 0.24
19 10 0.30
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (19 bp):
TTTTTTGTTGTTTTTTTTG
Found at i:219361 original size:33 final size:32
Alignment explanation
Indices: 219317--219389 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 32
219307 TTCTTTTCTC
*
219317 TTTTTTCTTTGTCCTCTTTTTT-TTGTTGTTTT
1 TTTTTTTTTTGTCCT-TTTTTTGTTGTTGTTTT
** *
219349 TTTTGTTTTTTGTTGTTTTTTTGTTTTTGTTTT
1 TTTT-TTTTTTGTCCTTTTTTTGTTGTTGTTTT
219382 TTTTTTTT
1 TTTTTTTT
219390 GTTAAGAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
32 14 0.40
33 21 0.60
ACGTcount: A:0.00, C:0.05, G:0.11, T:0.84
Consensus pattern (32 bp):
TTTTTTTTTTGTCCTTTTTTTGTTGTTGTTTT
Found at i:219367 original size:27 final size:27
Alignment explanation
Indices: 219337--219392 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
219327 GTCCTCTTTT
219337 TTTTGTTGTTTTT-TTTGTTTTTTGTTG
1 TTTTGTTGTTTTTGTTT-TTTTTTGTTG
* *
219364 TTTTTTTGTTTTTGTTTTTTTTTTTTG
1 TTTTGTTGTTTTTGTTTTTTTTTGTTG
219391 TT
1 TT
219393 AAGAAAAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 23 0.88
28 3 0.12
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (27 bp):
TTTTGTTGTTTTTGTTTTTTTTTGTTG
Found at i:219368 original size:30 final size:30
Alignment explanation
Indices: 219334--219392 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
219324 TTTGTCCTCT
219334 TTTTTTTGTTGTTT-TTTTTGTTTTTTGTTG
1 TTTTTTTGTT-TTTGTTTTTGTTTTTTGTTG
*
219364 TTTTTTTGTTTTTGTTTTTTTTTTTTGTT
1 TTTTTTTGTTTTTGTTTTTGTTTTTTGTT
219393 AAGAAAAAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 3 0.11
30 24 0.89
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (30 bp):
TTTTTTTGTTTTTGTTTTTGTTTTTTGTTG
Found at i:219388 original size:19 final size:19
Alignment explanation
Indices: 219336--219392 Score: 73
Period size: 18 Copynumber: 3.1 Consensus size: 19
219326 TGTCCTCTTT
*
219336 TTTTTG-TTGTTTTTTTTG
1 TTTTTGTTTTTTTTTTTTG
* *
219354 TTTTT-TGTTGTTTTTTTG
1 TTTTTGTTTTTTTTTTTTG
219372 TTTTTGTTTTTTTTTTTTG
1 TTTTTGTTTTTTTTTTTTG
219391 TT
1 TT
219393 AAGAAAAAGG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
18 19 0.59
19 13 0.41
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (19 bp):
TTTTTGTTTTTTTTTTTTG
Found at i:230405 original size:79 final size:76
Alignment explanation
Indices: 230268--230773 Score: 480
Period size: 79 Copynumber: 6.4 Consensus size: 76
230258 AAATTTAATA
* * ** * *
230268 TTTTGAAGATAAAGACTAGGGTTGGAGTATCCTTTCAAAAATAACGGGGCTGGAGTATCCCCGAT
1 TTTTGAAAATAAA-A-TCGGGTTGGAGTATCCCCTC-AAAATAA-AGGGTTGGAGTATCCCCGAT
*
230333 TAT-AGAAATTTGGTG
62 TATGA-AAAATTGGTG
* *
230348 TTTTGAAAATAAAATCGGGATTGGAGTATCCCCTCAAAAGTAATAGGGTTGGGGTATCTCCGATT
1 TTTTGAAAATAAAATCGGG-TTGGAGTATCCCCTCAAAA-TAA-AGGGTTGGAGTATCCCCGATT
* * *
230413 GTGAAAAATCGGTA
63 ATGAAAAATTGGTG
* * * * ** *
230427 TTTT-AGAAATAAAATCGGAGTTAGAGTATCTCCTTAGAAATAACGGGATTAAAGTATCCTCGAT
1 TTTTGA-AAATAAAATCGG-GTTGGAGTATCCCCTCA-AAATAAAGGG-TTGGAGTATCCCCGAT
** * *
230491 GGTAAAAAATTGATG
62 TATGAAAAATTGGTG
* * *
230506 TTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAATAGGGTTGGAGTATCCCCGATT
1 TTTTGAAAATAAAATC-GGGTTGGAGTATCCCCTC-AAAATAA-AGGGTTGGAGTATCCCCGATT
* * *
230571 GTAAAAAATTGGTA
63 ATGAAAAATTGGTG
*
230585 TTTT-AGAAATAAAATCGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATT
1 TTTTGA-AAATAAAATCGGGTTGGAGTATCCCCTC-AAAATAA-AGGGTTGGAGTATCCCCGATT
230649 ATGAAAAATTGGTG
63 ATGAAAAATTGGTG
* *
230663 TTTTGAAAATAAAATCGAGGTTGGAGTATCCCCTCAGAAATAACGAGGTTGAAGTATCCCCGATT
1 TTTTGAAAATAAAATCG-GGTTGGAGTATCCCCTCA-AAATAAAG-GGTTGGAGTATCCCCGATT
*
230728 ATGAAAAATTAGTG
63 ATGAAAAATTGGTG
*
230742 TTTTGGAAATAAAA-CTGGGTTGGAGTATCCCC
1 TTTTGAAAATAAAATC-GGGTTGGAGTATCCCC
230774 AATTGTGAAA
Statistics
Matches: 356, Mismatches: 53, Indels: 36
0.80 0.12 0.08
Matches are distributed among these distances:
78 100 0.28
79 234 0.66
80 22 0.06
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (76 bp):
TTTTGAAAATAAAATCGGGTTGGAGTATCCCCTCAAAATAAAGGGTTGGAGTATCCCCGATTATG
AAAAATTGGTG
Found at i:230703 original size:157 final size:155
Alignment explanation
Indices: 230286--230773 Score: 615
Period size: 157 Copynumber: 3.1 Consensus size: 155
230276 ATAAAGACTA
** * *
230286 GGGTTGGAGTATCCTTTCAAAAATAACGGGGCTGGAGTATCCCCGATTATAGAAATTTGGTGTTT
1 GGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATA-AAAATTGGTGTTT
* *
230351 TGAAAATAAAATCGGGATTGGAGTATCCCCTCA-AAAGTAATAGGGTTGGGGTATCTCCGATTGT
65 TGAAAATAAAATCGGG-TTGGAGTATCCCCTCAGAAA-TAATAGGGTTGGAGTATCCCCGATTGT
*
230415 GAAAAATCGGTATTTTAGAAATAAAATC
128 GAAAAATTGGTATTTTAGAAATAAAATC
* * * * * ** * *
230443 GGAGTTAGAGTATCTCCTTAGAAATAACGGGATTAAAGTATCCTCGATGGTA-AAAAATTGATGT
1 GG-GTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGAT--TATAAAAATTGGTGT
* * *
230507 TTTGGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAATAGGGTTGGAGTATCCCCGATTG
63 TTTGAAAATAAAATC-GGGTTGGAGTATCCCCTCAGAAATAATAGGGTTGGAGTATCCCCGATTG
*
230572 TAAAAAATTGGTATTTTAGAAATAAAATC
127 TGAAAAATTGGTATTTTAGAAATAAAATC
230601 GGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTT
1 GGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTAT-AAAAATTGGTGTTT
* * *
230666 TGAAAATAAAATCGAGGTTGGAGTATCCCCTCAGAAATAA-CGAGGTTGAAGTATCCCCGATTAT
65 TGAAAATAAAATCG-GGTTGGAGTATCCCCTCAGAAATAATAG-GGTTGGAGTATCCCCGATTGT
* * *
230730 GAAAAATTAGTGTTTTGGAAATAAAA-C
128 GAAAAATTGGTATTTTAGAAATAAAATC
230757 TGGGTTGGAGTATCCCC
1 -GGGTTGGAGTATCCCC
230774 AATTGTGAAA
Statistics
Matches: 282, Mismatches: 39, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
155 2 0.01
156 3 0.01
157 144 0.51
158 124 0.44
159 7 0.02
160 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (155 bp):
GGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATAAAAATTGGTGTTTT
GAAAATAAAATCGGGTTGGAGTATCCCCTCAGAAATAATAGGGTTGGAGTATCCCCGATTGTGAA
AAATTGGTATTTTAGAAATAAAATC
Found at i:230772 original size:50 final size:50
Alignment explanation
Indices: 230709--230807 Score: 153
Period size: 50 Copynumber: 2.0 Consensus size: 50
230699 GAAATAACGA
* *
230709 GGTTGAAGTATCCCCGATTATGAAAAATTAGTGTTTTGGAAATAAAACTG
1 GGTTGAAGTATCCCCAATTATGAAAAATTAGTGTTTTGAAAATAAAACTG
* * *
230759 GGTTGGAGTATCCCCAATTGTGAAAAATTGGTGTTTTGAAAATAAAACT
1 GGTTGAAGTATCCCCAATTATGAAAAATTAGTGTTTTGAAAATAAAACT
230808 AAGGTCGGAG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.32
Consensus pattern (50 bp):
GGTTGAAGTATCCCCAATTATGAAAAATTAGTGTTTTGAAAATAAAACTG
Found at i:230788 original size:129 final size:130
Alignment explanation
Indices: 230627--230903 Score: 425
Period size: 129 Copynumber: 2.1 Consensus size: 130
230617 TCAAAAATAA
* * * *
230627 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTGAAAATAAAA-TCGAGGTTGGAGTA
1 CGGGGTTGGAGTATCCCCAATTATGAAAAATTGGTGTTTTGAAAATAAAACT-AAGGTCGGAGCA
* *
230691 TCCCCTC-AGAAATAACGAGGTTGAAGTATCCCCGATTATGAAAAATTAGTGTTTTGGAAATAAA
65 TCCCATCGA-AAATAACGAGGTTGAAGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAA
230755 A-
129 AC
* *
230756 CTGGGTTGGAGTATCCCCAATTGTGAAAAATTGGTGTTTTGAAAATAAAACTAAGGTCGGAGCAT
1 CGGGGTTGGAGTATCCCCAATTATGAAAAATTGGTGTTTTGAAAATAAAACTAAGGTCGGAGCAT
* *
230821 CCCATCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAAAC
66 CCCATCGAAAATAACGAGGTTGAAGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAAAC
230886 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
230904 TCGGAAATAA
Statistics
Matches: 134, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
129 115 0.86
130 19 0.14
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.28
Consensus pattern (130 bp):
CGGGGTTGGAGTATCCCCAATTATGAAAAATTGGTGTTTTGAAAATAAAACTAAGGTCGGAGCAT
CCCATCGAAAATAACGAGGTTGAAGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAAAC
Found at i:230902 original size:79 final size:79
Alignment explanation
Indices: 230758--230913 Score: 222
Period size: 79 Copynumber: 2.0 Consensus size: 79
230748 AAATAAAACT
* * *
230758 GGGTTGGAGTATCCCCAATTGTGAAAAATTGGTGTTTTGAAAATAAAACTAAGGTCGGAGCATCC
1 GGGTTGGAGTATCCCCAATTATGAAAAATTAGTGTTTTGAAAATAAAACCAAGGTCGGAGCATCC
230823 CATCGAAAATAACG
66 CATCGAAAATAACG
* ** * *
230837 GGGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCAATTATGAAAAATTAGTGTTTTGAAAATAAAACCAAGGTCGGAGCATCC
* *
230902 CCTCGGAAATAA
66 CATCGAAAATAA
230914 AATATGAATG
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
79 67 1.00
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCAATTATGAAAAATTAGTGTTTTGAAAATAAAACCAAGGTCGGAGCATCC
CATCGAAAATAACG
Found at i:234490 original size:3 final size:3
Alignment explanation
Indices: 234482--234522 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
234472 GTCAACTTTT
*
234482 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCT TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
234523 TTTGATGGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.29, C:0.34, G:0.00, T:0.37
Consensus pattern (3 bp):
TCA
Found at i:237920 original size:33 final size:33
Alignment explanation
Indices: 237856--237918 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
237846 TTTTGATATT
* *
237856 TTTTTTATTATTTGAATGATTTTATATAAAATA
1 TTTTTTATTATTTGAATAATTTTATAAAAAATA
*
237889 TTTTTTATTATTTGACTAATTTT-TAAAAAA
1 TTTTTTATTATTTGAATAATTTTATAAAAAA
237919 ATCTATATGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 6 0.22
33 21 0.78
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.57
Consensus pattern (33 bp):
TTTTTTATTATTTGAATAATTTTATAAAAAATA
Found at i:238380 original size:20 final size:22
Alignment explanation
Indices: 238331--238381 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 22
238321 ATAGATTCAC
238331 TTTAGATTAAATTTAAAATATAA
1 TTTA-ATTAAATTTAAAATATAA
238354 TTT--TTAAATTT-AAAT-TAA
1 TTTAATTAAATTTAAAATATAA
238372 TTTAATTAAA
1 TTTAATTAAA
238382 ATTATTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
18 6 0.23
19 4 0.15
20 13 0.50
23 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
TTTAATTAAATTTAAAATATAA
Found at i:238388 original size:18 final size:19
Alignment explanation
Indices: 238367--238442 Score: 59
Period size: 22 Copynumber: 3.9 Consensus size: 19
238357 TTAAATTTAA
238367 ATTAATTTAAT-TAAAATT
1 ATTAATTTAATATAAAATT
* *
238385 ATT-ATTTTATAAAAAATT
1 ATTAATTTAATATAAAATT
238403 ATTTAAATTTAATTATAAAATAT
1 A-TT-AATTTAA-TATAAAAT-T
*
238426 ATAAATATTAAT-TAAAA
1 ATTAAT-TTAATATAAAA
238443 ATAAAATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
17 6 0.13
18 10 0.22
19 2 0.04
20 5 0.11
21 9 0.20
22 12 0.26
23 2 0.04
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATTAATTTAATATAAAATT
Found at i:238436 original size:22 final size:20
Alignment explanation
Indices: 238370--238445 Score: 68
Period size: 21 Copynumber: 3.8 Consensus size: 20
238360 AATTTAAATT
238370 AATTTAATT-AAAAT-TAT-
1 AATTTAATTAAAAATATATA
* * * *
238387 TATTTTATAAAAAATTATTTA
1 AATTTAATTAAAAA-TATATA
238408 AATTTAATTATAAAATATATA
1 AATTTAATTA-AAAATATATA
238429 AATATTAATTAAAAATA
1 AAT-TTAATTAAAAATA
238446 AAATTTTATT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
17 6 0.13
18 4 0.09
19 1 0.02
20 2 0.04
21 21 0.47
22 11 0.24
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AATTTAATTAAAAATATATA
Found at i:238679 original size:13 final size:13
Alignment explanation
Indices: 238661--238685 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
238651 TTGTAGTTCT
238661 TATATTTTTATTA
1 TATATTTTTATTA
238674 TATATTTTTATT
1 TATATTTTTATT
238686 TTATTATACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TATATTTTTATTA
Found at i:238808 original size:17 final size:17
Alignment explanation
Indices: 238770--238805 Score: 51
Period size: 14 Copynumber: 2.3 Consensus size: 17
238760 AAATTTTTAA
238770 ATATTCATATATATTTT
1 ATATTCATATATATTTT
238787 ATATTC-TAT-TA-TTT
1 ATATTCATATATATTTT
238801 ATATT
1 ATATT
238806 ATTTTTTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 8 0.42
15 2 0.11
16 3 0.16
17 6 0.32
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (17 bp):
ATATTCATATATATTTT
Found at i:239959 original size:30 final size:30
Alignment explanation
Indices: 239900--239959 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
239890 ACAAAAACAA
* **
239900 TATATACATATAGCATAATTATATATACAT
1 TATATACATATAGCAAAAAAATATATACAT
* *
239930 TATATACATATAGGAAAAAAATATGTACAT
1 TATATACATATAGCAAAAAAATATATACAT
239960 ATTGCTAAAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.50, C:0.08, G:0.07, T:0.35
Consensus pattern (30 bp):
TATATACATATAGCAAAAAAATATATACAT
Found at i:240049 original size:22 final size:22
Alignment explanation
Indices: 240024--240085 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
240014 GGTTTTTTTA
*
240024 AAAAATAATATGTATATATAGT
1 AAAAATAATATATATATATAGT
240046 AAAAATAATATATATATATA-T
1 AAAAATAATATATATATATAGT
*
240067 -AACATAACTATATATATAT
1 AAAAATAA-TATATATATAT
240086 TATGTACCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 6 0.16
21 12 0.32
22 19 0.51
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.37
Consensus pattern (22 bp):
AAAAATAATATATATATATAGT
Found at i:241193 original size:54 final size:58
Alignment explanation
Indices: 241068--241194 Score: 136
Period size: 62 Copynumber: 2.2 Consensus size: 58
241058 TTTAAAAATT
*
241068 TAAAATATAAATTATTTATATTATTATATAAAAATAATTAAATGTTATATAACATATAATA
1 TAAAATATAAATTATTTAAATTATTATATAAAAATAATTAAATGTTATAT---ATATAATA
* * **
241129 TAATATATATATATT-TTTAAATTATTATATAAATATAATTTTAT-TTATAT-TAT-ATA
1 TAA-A-ATATAAATTATTTAAATTATTATATAAAAATAATTAAATGTTATATATATAATA
241185 TAAAATATAA
1 TAAAATATAA
241195 TTAAAAATAA
Statistics
Matches: 58, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
54 5 0.09
55 1 0.02
56 6 0.10
57 3 0.05
61 9 0.16
62 26 0.45
63 8 0.14
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (58 bp):
TAAAATATAAATTATTTAAATTATTATATAAAAATAATTAAATGTTATATATATAATA
Found at i:246883 original size:2 final size:2
Alignment explanation
Indices: 246876--246908 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
246866 TCATTGTTCC
246876 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
246909 TGAACTAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:247848 original size:2 final size:2
Alignment explanation
Indices: 247843--247881 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
247833 ATGCGTGTGT
247843 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
247882 CTTCTGGATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:252402 original size:20 final size:20
Alignment explanation
Indices: 252379--252416 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
252369 CGATCTATAA
*
252379 GTATTTGTATCGACACATAG
1 GTATTTATATCGACACATAG
*
252399 GTATTTATATCGATACAT
1 GTATTTATATCGACACAT
252417 TATGGTTGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (20 bp):
GTATTTATATCGACACATAG
Found at i:252510 original size:13 final size:13
Alignment explanation
Indices: 252489--252520 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
252479 TCGATACATA
*
252489 ATACTTTGTATCG
1 ATACATTGTATCG
252502 ATACATTGTATCG
1 ATACATTGTATCG
252515 ATACAT
1 ATACAT
252521 GTTTGTTGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (13 bp):
ATACATTGTATCG
Found at i:254218 original size:3 final size:3
Alignment explanation
Indices: 254203--254254 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
254193 AACCATCAAA
*
254203 GAT GAT GAA GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
254251 GAT G
1 GAT G
254255 TTGACTCGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:259843 original size:20 final size:22
Alignment explanation
Indices: 259818--259865 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
259808 TCTCGTTAAA
*
259818 AAAAAAATTT-TC-CCTTTGAT
1 AAAAAAATTTCTCTCCCTTGAT
259838 AAAAAAATTTCTCTCCCTTGAT
1 AAAAAAATTTCTCTCCCTTGAT
259860 AAAAAA
1 AAAAAA
259866 TTTATTTTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 10 0.40
21 2 0.08
22 13 0.52
ACGTcount: A:0.46, C:0.17, G:0.04, T:0.33
Consensus pattern (22 bp):
AAAAAAATTTCTCTCCCTTGAT
Found at i:259844 original size:22 final size:24
Alignment explanation
Indices: 259816--259865 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 24
259806 GCTCTCGTTA
*
259816 AAAAAAAAATTT-TC-CCTTTGAT
1 AAAAAAAAATTTCTCTCCCTTGAT
259838 --AAAAAAATTTCTCTCCCTTGAT
1 AAAAAAAAATTTCTCTCCCTTGAT
259860 AAAAAA
1 AAAAAA
259866 TTTATTTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
20 10 0.43
21 2 0.09
22 7 0.30
24 4 0.17
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (24 bp):
AAAAAAAAATTTCTCTCCCTTGAT
Found at i:261611 original size:21 final size:22
Alignment explanation
Indices: 261571--261613 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
261561 GATGATTTTG
* *
261571 ATGAAAAATGAAGTATTTTGAA
1 ATGAAAAATGAAGAAATTTGAA
261593 ATGAAAAAT-AAGAAATTTGAA
1 ATGAAAAATGAAGAAATTTGAA
261614 GAAGATTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.28
Consensus pattern (22 bp):
ATGAAAAATGAAGAAATTTGAA
Found at i:267959 original size:13 final size:13
Alignment explanation
Indices: 267941--267967 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
267931 TACCAGTTTC
267941 ATGTATCGATACA
1 ATGTATCGATACA
267954 ATGTATCGATACA
1 ATGTATCGATACA
267967 A
1 A
267968 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:271167 original size:20 final size:20
Alignment explanation
Indices: 271142--271179 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
271132 TATTTCAAAT
*
271142 TATCGATCCATAGGTATTTG
1 TATCGATACATAGGTATTTG
271162 TATCGATACATAGGTATT
1 TATCGATACATAGGTATT
271180 AATATTGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.39
Consensus pattern (20 bp):
TATCGATACATAGGTATTTG
Found at i:271189 original size:20 final size:20
Alignment explanation
Indices: 271142--271192 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
271132 TATTTCAAAT
* **
271142 TATCGATCCATAGGTATTTG
1 TATCGATACATAGGTATTAA
271162 TATCGATACATAGGTATTAA
1 TATCGATACATAGGTATTAA
*
271182 TATTGATACAT
1 TATCGATACAT
271193 TATGGTTGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (20 bp):
TATCGATACATAGGTATTAA
Found at i:271290 original size:13 final size:13
Alignment explanation
Indices: 271272--271298 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
271262 ACATTATGCT
271272 TTGTATCGATACA
1 TTGTATCGATACA
271285 TTGTATCGATACA
1 TTGTATCGATACA
271298 T
1 T
271299 GAAACTGGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:271353 original size:20 final size:20
Alignment explanation
Indices: 271328--271380 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
271318 CTACCATTGT
271328 TTGTATCGATACATGAAATA
1 TTGTATCGATACATGAAATA
271348 TTGTATCGATACATGAAATA
1 TTGTATCGATACATGAAATA
*
271368 TTGAATCGATACA
1 TTGTATCGATACA
271381 ATGTATCAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34
Consensus pattern (20 bp):
TTGTATCGATACATGAAATA
Found at i:274156 original size:100 final size:100
Alignment explanation
Indices: 273978--274177 Score: 319
Period size: 100 Copynumber: 2.0 Consensus size: 100
273968 TCAAACAAAG
** *
273978 TGATAATCAACTTCAATATGCTTTATACAAGCATGAACCCCTGGATTAGCTGCCATATGTGTTGT
1 TGATAATCAACTTCAATATGCTTTATACAAGCATGAACCCCTGGATTAGCTGCCATATCAGTTCT
* * **
274043 GCTAAGATTATCACAATAAACAAGGATTGGAATTA
66 ACTAAGATCATCACAATAAACAACCATTGGAATTA
**
274078 TGATAATCAACTTCAATATGCTTTATACAAGCATGATGCCCTGGATTAGCTGCCATATCAGTTCT
1 TGATAATCAACTTCAATATGCTTTATACAAGCATGAACCCCTGGATTAGCTGCCATATCAGTTCT
274143 ACTAAGATCATCACAATAAACAACCATTGGAATTA
66 ACTAAGATCATCACAATAAACAACCATTGGAATTA
274178 AAATTTGGAG
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 91 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30
Consensus pattern (100 bp):
TGATAATCAACTTCAATATGCTTTATACAAGCATGAACCCCTGGATTAGCTGCCATATCAGTTCT
ACTAAGATCATCACAATAAACAACCATTGGAATTA
Found at i:275713 original size:49 final size:50
Alignment explanation
Indices: 275511--275713 Score: 170
Period size: 49 Copynumber: 4.1 Consensus size: 50
275501 ACAAGTGTAA
* *
275511 TTTTTATTTTAAAAATTATTTTTCATAAACAAC-TTTGTATCAAGTGAAG
1 TTTTTATTTTAAAAATTATTTTTCATAAACAACTTTTGTATAAAGTGCAG
* * *
275560 TTTTTATTTTAAAAACTGTTTTTCATAAACAA-TTTTGTATTAAGTGCA-
1 TTTTTATTTTAAAAATTATTTTTCATAAACAACTTTTGTATAAAGTGCAG
* * * * *
275608 ATTTT-TTTT-ATAATTTTTTATTC-TAAA-AACTGTTTTTTCATAAAAAGTGCAC
1 TTTTTATTTTAAAAATTATTT-TTCATAAACAAC--TTTTGT-AT--AAAGTGCAG
* * * *
275660 TTTTTATTTTAAAAGTTACTTTTCATAAATAA-TATTGTATAAAGTGCAG
1 TTTTTATTTTAAAAATTATTTTTCATAAACAACTTTTGTATAAAGTGCAG
275709 TTTTT
1 TTTTT
275714 GAGATTCAAA
Statistics
Matches: 123, Mismatches: 18, Indels: 26
0.74 0.11 0.16
Matches are distributed among these distances:
45 2 0.02
46 11 0.09
47 7 0.06
48 9 0.07
49 58 0.47
51 9 0.07
52 8 0.07
53 7 0.06
54 10 0.08
55 2 0.02
ACGTcount: A:0.34, C:0.08, G:0.08, T:0.50
Consensus pattern (50 bp):
TTTTTATTTTAAAAATTATTTTTCATAAACAACTTTTGTATAAAGTGCAG
Found at i:276030 original size:32 final size:32
Alignment explanation
Indices: 275958--276035 Score: 95
Period size: 32 Copynumber: 2.4 Consensus size: 32
275948 GAAAAACCTA
* * *
275958 TTTACATTTTAGGCCACATAGGAGTAAATGAT
1 TTTACATTTTAGCCCACATAGGAGCAAAAGAT
*
275990 TTTACATTTTATCCCACATAGGA-CAAAAGAGT
1 TTTACATTTTAGCCCACATAGGAGCAAAAGA-T
*
276022 TTTGCATTTTAGCC
1 TTTACATTTTAGCC
276036 TATAGACAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 5 0.13
32 34 0.87
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (32 bp):
TTTACATTTTAGCCCACATAGGAGCAAAAGAT
Found at i:277655 original size:21 final size:20
Alignment explanation
Indices: 277631--277679 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
277621 TTAAAATATA
*
277631 TATCGATACAACAACTTAATG
1 TATCGATAC-ACAACTAAATG
* *
277652 TATCGATACATAAGTAAATG
1 TATCGATACACAACTAAATG
277672 TATCGATA
1 TATCGATA
277680 TTGGACCCCG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (20 bp):
TATCGATACACAACTAAATG
Found at i:279534 original size:11 final size:10
Alignment explanation
Indices: 279509--279534 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
279499 CTGAAAAGCA
279509 ATTTTTCAAG
1 ATTTTTCAAG
279519 ATTTTTCAAG
1 ATTTTTCAAG
279529 ATTTTT
1 ATTTTT
279535 GAAATATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.58
Consensus pattern (10 bp):
ATTTTTCAAG
Found at i:280087 original size:97 final size:97
Alignment explanation
Indices: 279889--280074 Score: 212
Period size: 97 Copynumber: 1.9 Consensus size: 97
279879 GAGGGGATTG
** * ** * *
279889 TTTTTAAACTTGTCAAGATATAAATTTTATTTTTGCTTAAATTGTCATCATCAGGGATACTCTAA
1 TTTTTAAACTTGTCAAGATATAAATCCTATTTTTGCCTAAATTACCATCATCAGGGATAATCCAA
* * ** *
279954 CCCCATTTTTCTGAGGGGGTACTCCAACGCTA
66 CCCCATATCTCCAAGGGGATACTCCAACGCTA
* * *
279986 TTTTTAAACTTGTCAAGATTTAACTCCTATTTTTGCCTAAATTACCATCGTC-GAGGATAATCCA
1 TTTTTAAACTTGTCAAGATATAAATCCTATTTTTGCCTAAATTACCATCATCAG-GGATAATCCA
*
280050 ACCCTATATCTCCAAGGGGATACTC
65 ACCCCATATCTCCAAGGGGATACTC
280075 TAGCTCTATT
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
96 1 0.01
97 71 0.99
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.37
Consensus pattern (97 bp):
TTTTTAAACTTGTCAAGATATAAATCCTATTTTTGCCTAAATTACCATCATCAGGGATAATCCAA
CCCCATATCTCCAAGGGGATACTCCAACGCTA
Found at i:289076 original size:93 final size:93
Alignment explanation
Indices: 288963--289160 Score: 261
Period size: 93 Copynumber: 2.1 Consensus size: 93
288953 TGCCTACATG
* * * * * *
288963 TATTGATAAATTGAAAAATGTATCGATACATTTGGATTAAAAACCCATAATGTATTGATACTATA
1 TATTGATACATTGAAAAATGTATCAATACATTTGGATCAAAAACCCAAAATGTATCGATACAATA
* *
289028 AGAAATGTATCAATACATTGTAAGCATA
66 AGAAATGTATCAAGACATTGCAAGCATA
* * *
289056 TATTGATACATTGAAGAATGTATCAATACATTTGGGTCAAAAACCTAAAATGTATCGATACAATA
1 TATTGATACATTGAAAAATGTATCAATACATTTGGATCAAAAACCCAAAATGTATCGATACAATA
** *
289121 AGAAATGTATTGAGACATTGCAAGCATG
66 AGAAATGTATCAAGACATTGCAAGCATA
*
289149 TATCGATACATT
1 TATTGATACATT
289161 CACTTATGTA
Statistics
Matches: 90, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 90 1.00
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32
Consensus pattern (93 bp):
TATTGATACATTGAAAAATGTATCAATACATTTGGATCAAAAACCCAAAATGTATCGATACAATA
AGAAATGTATCAAGACATTGCAAGCATA
Found at i:289086 original size:20 final size:21
Alignment explanation
Indices: 289026--289087 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 21
289016 ATTGATACTA
289026 TAAGAAATGTATCAATACATTG
1 TAAG-AATGTATCAATACATTG
* * **
289048 TAAGCATATATTGATACATTG
1 TAAGAATGTATCAATACATTG
289069 -AAGAATGTATCAATACATT
1 TAAGAATGTATCAATACATT
289088 TGGGTCAAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
20 15 0.47
21 13 0.41
22 4 0.12
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.34
Consensus pattern (21 bp):
TAAGAATGTATCAATACATTG
Found at i:289244 original size:20 final size:20
Alignment explanation
Indices: 289219--289289 Score: 99
Period size: 20 Copynumber: 3.5 Consensus size: 20
289209 CATGGTCCAA
289219 TATCGATACAATT-ACTTATG
1 TATCGATAC-ATTAACTTATG
*
289239 TATCGATACATTCACTTATG
1 TATCGATACATTAACTTATG
*
289259 TATCGATACATTAACTTGTTG
1 TATCGATACATTAACTT-ATG
289280 TATCGATACA
1 TATCGATACA
289290 AATAGTAGAA
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
19 3 0.06
20 32 0.68
21 12 0.26
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.39
Consensus pattern (20 bp):
TATCGATACATTAACTTATG
Found at i:301878 original size:20 final size:20
Alignment explanation
Indices: 301853--301939 Score: 75
Period size: 20 Copynumber: 4.7 Consensus size: 20
301843 GTTTGAAGCA
301853 ATGTATCGATACAAT-T-CATC
1 ATGTATCGATACAATGTGC--C
301873 ATGTATCGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
301893 ATGTATCGATAC-A-----C
1 ATGTATCGATACAATGTGCC
*
301907 -TGTATGGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
*
301926 ATGTATCAATACAA
1 ATGTATCGATACAA
301940 ACAGTGGCAA
Statistics
Matches: 55, Mismatches: 3, Indels: 18
0.72 0.04 0.24
Matches are distributed among these distances:
13 10 0.18
14 2 0.04
19 2 0.04
20 39 0.71
21 1 0.02
22 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTGCC
Found at i:301911 original size:33 final size:33
Alignment explanation
Indices: 301874--301938 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
301864 CAATTCATCA
*
301874 TGTATCGATACAATGTGCCATGTATCGATACAC
1 TGTATCGATACAATGTGCCATGTATCAATACAC
*
301907 TGTATGGATACAATGTGCCATGTATCAATACA
1 TGTATCGATACAATGTGCCATGTATCAATACA
301939 AACAGTGGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Consensus pattern (33 bp):
TGTATCGATACAATGTGCCATGTATCAATACAC
Found at i:302896 original size:33 final size:33
Alignment explanation
Indices: 302854--302916 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
302844 AGAAGCAATG
*
302854 TATCGATACAAT-TCATCATGTATCGATACATTA
1 TATCGATACAATGT-ACCATGTATCGATACATTA
302887 TATCGATACAATGTACCATGTATCGATACA
1 TATCGATACAATGTACCATGTATCGATACA
302917 AACAGTGGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (33 bp):
TATCGATACAATGTACCATGTATCGATACATTA
Found at i:302985 original size:13 final size:13
Alignment explanation
Indices: 302967--302993 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
302957 ACAATTGTCC
302967 ATGTATCGATACA
1 ATGTATCGATACA
302980 ATGTATCGATACA
1 ATGTATCGATACA
302993 A
1 A
302994 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:305282 original size:22 final size:22
Alignment explanation
Indices: 305257--305326 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
305247 AAAGGTGACG
305257 GAAAACGATTTTTGATGATTTT
1 GAAAACGATTTTTGATGATTTT
** *
305279 GAAAGAC-AAATTTGATGAATTT
1 GAAA-ACGATTTTTGATGATTTT
*
305301 -AAAACCGTTTTTGTTGATGATTTT
1 GAAAA-CG-ATTT-TTGATGATTTT
305325 GA
1 GA
305327 TGAAAAAATA
Statistics
Matches: 35, Mismatches: 7, Indels: 9
0.69 0.14 0.18
Matches are distributed among these distances:
20 1 0.03
21 4 0.11
22 16 0.46
23 3 0.09
24 10 0.29
25 1 0.03
ACGTcount: A:0.34, C:0.06, G:0.19, T:0.41
Consensus pattern (22 bp):
GAAAACGATTTTTGATGATTTT
Found at i:311682 original size:13 final size:13
Alignment explanation
Indices: 311664--311690 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
311654 ATAATTGTCC
311664 ATGTATCGATACA
1 ATGTATCGATACA
311677 ATGTATCGATACA
1 ATGTATCGATACA
311690 A
1 A
311691 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:312163 original size:223 final size:224
Alignment explanation
Indices: 311774--312215 Score: 753
Period size: 223 Copynumber: 2.0 Consensus size: 224
311764 ATAATGTATC
311774 GATACAAATACCTATGTATCGATACTTTGAAGTATTTTTTACTTAAAAACATTTGAATTAAGATT
1 GATACAAATACCTATGTATCGATACTTTGAAGTATTTTTTACTTAAAAACATTTGAATTAAGATT
311839 CAAAAACATTTGTTTATAACTCTAAAACTTTCATTGATATAGAAAATTACTTAGAACATGTTTTT
66 CAAAAACATTTGTTTATAACTCTAAAACTTTCATTGATATAGAAAATTACTTAGAACATGTTTTT
* * *
311904 AGAGTATTTTTGAGCGAATAAAACTTGTTTACGATTTTACAAATATTTTTTGATTTTATTCAATC
131 AGAGTATTTTTGAGCGAACAAAACTTGTTTACGATTTTACAAATATTTTTCGATTTTATTCAATA
* * *
311969 TTTTTTATATTAAAACCTAGATCCTAACA
196 TTTATTATATCAAAACCAAGATCCTAACA
* *
311998 GATACAAATACCTATGTATCGATACTTTGAAGTA-TTTTTACTTAAAAACATTTGAATTATGGTT
1 GATACAAATACCTATGTATCGATACTTTGAAGTATTTTTTACTTAAAAACATTTGAATTAAGATT
*
312062 CAAAAACATTTG-TTATAAGTCTAAAACTTTCATTGATATAGAAAATTACTTAGAACATGTTTTT
66 CAAAAACATTTGTTTATAACTCTAAAACTTTCATTGATATAGAAAATTACTTAGAACATGTTTTT
* **
312126 AGAGTGTTTTTTGAGCGAACAAAACTTGTTTACGATTTTTTAAATATTTTTCGATTTTATTCAAT
131 AGAGT-ATTTTTGAGCGAACAAAACTTGTTTACGATTTTACAAATATTTTTCGATTTTATTCAAT
312191 ATTTATTATATCAAAACCAAGATCC
195 ATTTATTATATCAAAACCAAGATCC
312216 AGACAATCTT
Statistics
Matches: 205, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
222 56 0.27
223 115 0.56
224 34 0.17
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.42
Consensus pattern (224 bp):
GATACAAATACCTATGTATCGATACTTTGAAGTATTTTTTACTTAAAAACATTTGAATTAAGATT
CAAAAACATTTGTTTATAACTCTAAAACTTTCATTGATATAGAAAATTACTTAGAACATGTTTTT
AGAGTATTTTTGAGCGAACAAAACTTGTTTACGATTTTACAAATATTTTTCGATTTTATTCAATA
TTTATTATATCAAAACCAAGATCCTAACA
Found at i:312529 original size:21 final size:20
Alignment explanation
Indices: 312496--312536 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
312486 AAAAAAAAAG
*
312496 AAAAATTTTCCCCTTAATAA
1 AAAAATTTCCCCCTTAATAA
*
312516 AAAAATTCTCCCCCTTGATAA
1 AAAAATT-TCCCCCTTAATAA
312537 TCAGTTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.41, C:0.24, G:0.02, T:0.32
Consensus pattern (20 bp):
AAAAATTTCCCCCTTAATAA
Found at i:314303 original size:22 final size:21
Alignment explanation
Indices: 314268--314317 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
314258 TTTATTGATG
*
314268 ATTTTG-A-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
314288 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
314309 AATTTGAAG
1 ATTTTGAAG
314318 AAGATTTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 12 0.46
22 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:314314 original size:21 final size:22
Alignment explanation
Indices: 314275--314317 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
314265 ATGATTTTGA
* *
314275 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
314297 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
314318 AAGATTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:316698 original size:17 final size:17
Alignment explanation
Indices: 316676--316714 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
316666 CATGGATTGA
316676 TTCTTCAACAACTAAAG
1 TTCTTCAACAACTAAAG
*
316693 TTCTTCAACAACTAATG
1 TTCTTCAACAACTAAAG
316710 TTCTT
1 TTCTT
316715 TTGTTAAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.38
Consensus pattern (17 bp):
TTCTTCAACAACTAAAG
Found at i:320003 original size:20 final size:20
Alignment explanation
Indices: 319978--320035 Score: 75
Period size: 19 Copynumber: 3.0 Consensus size: 20
319968 CTGCTAGTTT
* *
319978 CATGTATCAATACAATTGTC
1 CATGTATCGATACAATTGTA
*
319998 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGTA
320017 CATGTATCGATAC-ATTGTA
1 CATGTATCGATACAATTGTA
320036 TCGATACAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 1 0.03
19 18 0.55
20 14 0.42
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGTA
Found at i:320037 original size:13 final size:13
Alignment explanation
Indices: 320019--320043 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
320009 ACAATGAACA
320019 TGTATCGATACAT
1 TGTATCGATACAT
320032 TGTATCGATACA
1 TGTATCGATACA
320044 AAACATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:320513 original size:2 final size:2
Alignment explanation
Indices: 320506--320539 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
320496 GACCCAAGAA
*
320506 AG AG AG AG AG AG AG AG AG A- AG AG AG AG AA AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
320540 AACTTGATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (2 bp):
AG
Found at i:325332 original size:293 final size:292
Alignment explanation
Indices: 324664--325526 Score: 1078
Period size: 293 Copynumber: 3.0 Consensus size: 292
324654 TTTTATTTTA
*
324664 TACCTTGAAAAGTGATATGTTTTCATGGATGTTTCCAATTGTAAAGTAATTGTTGGTTACAAATC
1 TACCTTGAAAAGTAATATGTTTTCATGGATGTTTCCAATTGTAAAGTAATTGTTGGTTACAAATC
* * *
324729 TTATTTTGCACTTACATAAAATGGATTGATTCTTGTGTTTGTCATTTATAGCCTCATAATTCTTT
66 TTATTTTGCACTTACATAAAATGGGTTGATTCTTATGTTTGTCATTTATAGCCTAATAATTCTTT
* *
324794 TATATTTTTAGGCTATTTGAAAATGGTTTGAAAGTATTATGTTGTTTTTTTACAAGCATAGGCTA
131 TATATTTTTAGGCTATTTGAAAATGGTTTGAAAGTATTATGTT-ATTTTTGACAAGCATAGGCTA
* *** * * * **
324859 GACATTTATGATACATAAAATGAAGCTATACT-T-CATGTTTGGGTTATTTTGGAGCCTGTCTTA
195 GAAATTTATGATAC-TTGGATGAAGCTAAACTATAAAT-TTTGGGTTATTTTAGAGCCTGTCACA
* * *
324922 AGATGTA-AA-GATCGAAAGGATGTCGAAACATAT
258 AGATGTATAAGGATCGAAGGGATGCCAAAACATAT
* * * * * * *
324955 TACCTTAAAAAGAAATATGCTTTACAT--ATGTTTCTAATTGTAAAGTCATTGTTAGCTACAAAT
1 TACCTTGAAAAGTAATATG-TTTTCATGGATGTTTCCAATTGTAAAGTAATTGTTGGTTACAAAT
* * * *
325018 CTTATTTTGCACTTACATAAAATGGGTTGATTCTTACGTTTATCATTTATAAGCCTAACATTTCT
65 CTTATTTTGCACTTACATAAAATGGGTTGATTCTTATGTTTGTCATTTAT-AGCCTAATAATTCT
* * * * *
325083 TCTATATTTTTAGGCTATTTGAAAATAGTTTGAAAATATTATGTTATTTTTGACAAGCGTAAGCT
129 TTTATATTTTTAGGCTATTTGAAAATGGTTTGAAAGTATTATGTTATTTTTGACAAGCATAGGCT
* * *
325148 -GAAATTAATAATACTTTGGATGAAGCTAAATTATAAATTTTGGGTTATTTTAGAG-CTCGTCAC
194 AGAAATTTATGATAC-TTGGATGAAGCTAAACTATAAATTTTGGGTTATTTTAGAGCCT-GTCAC
*
325211 AAGACGTATAAGGATCGAAGGGATGCCAAAACATAT
257 AAGATGTATAAGGATCGAAGGGATGCCAAAACATAT
* *
325247 TACCTTGAAAAGTAATATGTTTTCATGGATGTTTCCAATTGTAAATTAATTATTGGTTACAAATC
1 TACCTTGAAAAGTAATATGTTTTCATGGATGTTTCCAATTGTAAAGTAATTGTTGGTTACAAATC
* * * ** *
325312 TTATTTTCCACTTACATAAAATGGGTTTATTCTTATATTTGTCATTTATAGGTTGGATAATTCTT
66 TTATTTTGCACTTACATAAAATGGGTTGATTCTTATGTTTGTCATTTATAGCCT-AATAATTCTT
* * *
325377 TTATATTTTTAAGCTATTTGAAAATGGTTTGAAAGTTTTATGTTATTTTTG-CTAGGCATAGGCT
130 TTATATTTTTAGGCTATTTGAAAATGGTTTGAAAGTATTATGTTATTTTTGAC-AAGCATAGGCT
* * * * * *
325441 AGATATTTATGATACTTGAGATTAAGTTAAACTATAAGTTTTGGGTTATTCTAGAGCCTGTTACA
194 AGAAATTTATGATACTTG-GATGAAGCTAAACTATAAATTTTGGGTTATTTTAGAGCCTGTCACA
325506 AGATGTATAAGGATCGAAGGG
258 AGATGTATAAGGATCGAAGGG
325527 GTGCTGAAAT
Statistics
Matches: 482, Mismatches: 76, Indels: 25
0.83 0.13 0.04
Matches are distributed among these distances:
289 25 0.05
290 121 0.25
291 79 0.16
292 48 0.10
293 139 0.29
294 68 0.14
295 2 0.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.41
Consensus pattern (292 bp):
TACCTTGAAAAGTAATATGTTTTCATGGATGTTTCCAATTGTAAAGTAATTGTTGGTTACAAATC
TTATTTTGCACTTACATAAAATGGGTTGATTCTTATGTTTGTCATTTATAGCCTAATAATTCTTT
TATATTTTTAGGCTATTTGAAAATGGTTTGAAAGTATTATGTTATTTTTGACAAGCATAGGCTAG
AAATTTATGATACTTGGATGAAGCTAAACTATAAATTTTGGGTTATTTTAGAGCCTGTCACAAGA
TGTATAAGGATCGAAGGGATGCCAAAACATAT
Found at i:329033 original size:52 final size:52
Alignment explanation
Indices: 328971--329076 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
328961 AATAAATTAC
* *
328971 ATGATTCAAATTCAAATAATTAAAAGTTAAATTCAAATTATTTGAATTTAAT
1 ATGATTCAAATTCAAAAAATTAAAAGTTAAATTCAAATTATTTAAATTTAAT
*
329023 ATGATTCAAATTTAAAAAATTAAAAGTTAAATTCAAATTATTTAAATTTAAT
1 ATGATTCAAATTCAAAAAATTAAAAGTTAAATTCAAATTATTTAAATTTAAT
329075 AT
1 AT
329077 AACTCGAATA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.41
Consensus pattern (52 bp):
ATGATTCAAATTCAAAAAATTAAAAGTTAAATTCAAATTATTTAAATTTAAT
Found at i:334292 original size:3 final size:3
Alignment explanation
Indices: 334286--334327 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
334276 AGATAGAAAC
334286 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
334328 TGTAGACACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:334709 original size:20 final size:20
Alignment explanation
Indices: 334680--334733 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
334670 TTTACCCAGA
*
334680 TGTATCGATACATTGTTCAT
1 TGTATCGATACATTATTCAT
*
334700 TGTATTGATACATTATTCAT
1 TGTATCGATACATTATTCAT
334720 TGTATCGATACATT
1 TGTATCGATACATT
334734 CTGGGTTTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (20 bp):
TGTATCGATACATTATTCAT
Found at i:334781 original size:69 final size:70
Alignment explanation
Indices: 334629--334782 Score: 249
Period size: 70 Copynumber: 2.2 Consensus size: 70
334619 TTTTCATAAT
* *
334629 TTGTATCAATACATTATTTATTGTATCGATACATTCTGGGCTTTACCCAGATGTATCGATACATT
1 TTGTATCGATACATTATTCATTGTATCGATACATTCTGGGCTTTACCCAGATGTATCGATACATT
334694 GTTCA
66 GTTCA
*
334699 TTGTATTGATACATTATTCATTGTATCGATACATTCTGGG-TTTACCCAGATGTATCGATACATT
1 TTGTATCGATACATTATTCATTGTATCGATACATTCTGGGCTTTACCCAGATGTATCGATACATT
*
334763 TTTCAA
66 GTTC-A
334769 TT-TATCGATACATT
1 TTGTATCGATACATT
334783 TAGGCATTTT
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
69 38 0.49
70 40 0.51
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (70 bp):
TTGTATCGATACATTATTCATTGTATCGATACATTCTGGGCTTTACCCAGATGTATCGATACATT
GTTCA
Found at i:337192 original size:78 final size:77
Alignment explanation
Indices: 337063--337208 Score: 188
Period size: 78 Copynumber: 1.9 Consensus size: 77
337053 TTTTCATCTC
* *
337063 GGGGATACTCCAACCCCGATTTTATTTTCAAAACATCAATTTTTCATAATC-GAGGATACTCCAA
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAACATCAATTTCTCACAATCGGA-GATACTCCAA
337127 TCCCCTTATTTTCG
65 -CCCCTTATTTTCG
* * * **
337141 GGGGATACTCCAACCCTGGTTTTA-TTTCTAAAATATTGATTTCTCACAATCGGAGATACTCCAA
1 GGGGATACTCCAACCCCGATTTTATTTTC-AAAACATCAATTTCTCACAATCGGAGATACTCCAA
337205 CCCC
65 CCCC
337209 AATTTTATTT
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
77 8 0.14
78 49 0.83
79 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (77 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAACATCAATTTCTCACAATCGGAGATACTCCAAC
CCCTTATTTTCG
Found at i:337313 original size:131 final size:129
Alignment explanation
Indices: 337061--337339 Score: 341
Period size: 131 Copynumber: 2.1 Consensus size: 129
337051 ATTTTTCATC
* * * * *
337061 TCGGGGATACTCCAACCCCGATTTTATTTTCAAAACATCAATTTTTCATAATCGAGGATACTCCA
1 TCGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTTCACAATCGAGAACACTCCA
* * ** *
337126 ATCCCCTTATTTTCGGGGGATACTCCAACCCTGGTTTTATTTCTAAAATATTGA-TTTCTCACAA
66 ATCCCATTATTTTCGGGGGATACTCCAACCCCGGCCTTATTTCTAAAATATCGATTTTC-CACAA
*
337190 TCGGAGATACTCCAACCCCAATTTTA-TTTCTAAAACACCAATCTTTTCACAATCGAGAACACTC
1 TCGGGGATACTCCAACCCCAATTTTATTTTC-AAAACACCAAT-TTTTCACAATCGAGAACACTC
* * *
337254 CGA-CCCTATTATTTTGGCGGGGATACTCCAACCCCGGCCTTATTTCTAAAGCT-TCGATTTTCC
64 CAATCCC-ATTATTTTCG-GGGGATACTCCAACCCCGGCCTTATTTCTAAA-ATATCGATTTTCC
337317 ACAA
126 ACAA
*
337321 TCGGGGATACTCTAACCCC
1 TCGGGGATACTCCAACCCC
337340 GTTATCTTCG
Statistics
Matches: 128, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
128 4 0.03
129 37 0.29
130 28 0.22
131 54 0.42
132 5 0.04
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.32
Consensus pattern (129 bp):
TCGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTTCACAATCGAGAACACTCCA
ATCCCATTATTTTCGGGGGATACTCCAACCCCGGCCTTATTTCTAAAATATCGATTTTCCACAA
Found at i:337376 original size:79 final size:78
Alignment explanation
Indices: 337195--337493 Score: 260
Period size: 79 Copynumber: 3.8 Consensus size: 78
337185 CACAATCGGA
* * * * * * * * **
337195 GATACTCCAACCCCAATTTTATTTCTAAAACACCAATCTTTTCACAATCGAGAACACTCCGACCC
1 GATACTCCAAACCCGATTTTATTT-TAAAACACCGAT-TTTCCATAATCGGGGATACTCTAACCC
** *
337260 TATTATTT-TGGCGGG
64 CGTTATTTCT-GAGGG
* *** * ** *
337275 GATACTCCAACCCCGGCCTTATTTCTAAAGCTTCGATTTTCCACAATCGGGGATACTCTAACCCC
1 GATACTCCAAACCCGATTTTATTT-TAAAACACCGATTTTCCATAATCGGGGATACTCTAACCCC
337340 GTTATCTTC-GAGGG
65 GTTAT-TTCTGAGGG
* * * * * *
337354 GATACTCCAATCCCGATTTTATTTTCAAAACACCGATTTTCTATAATCAGGGATGCTCCAACCCT
1 GATACTCCAAACCCGATTTTATTTT-AAAACACCGATTTTCCATAATCGGGGATACTCTAACCCC
337419 GTTATTTCTGAGGG
65 GTTATTTCTGAGGG
*
337433 GATACTCCAAACCCGATTTTATTTATAAAACACCGATTTTTCATAATCAGGGGATACTCTA
1 GATACTCCAAACCCGATTTTATTT-TAAAACACCGATTTTCCATAATC-GGGGATACTCTA
337494 GCCCTGTTGT
Statistics
Matches: 177, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
78 4 0.02
79 132 0.75
80 41 0.23
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.31
Consensus pattern (78 bp):
GATACTCCAAACCCGATTTTATTTTAAAACACCGATTTTCCATAATCGGGGATACTCTAACCCCG
TTATTTCTGAGGG
Found at i:340374 original size:21 final size:20
Alignment explanation
Indices: 340320--340394 Score: 60
Period size: 21 Copynumber: 3.6 Consensus size: 20
340310 TTGCAAAAAT
* * *
340320 TGTATTGATATAGGCTTATAA
1 TGTATTGATACATGCTT-CAA
* *
340341 TGTATCGACACATGCTTGCAA
1 TGTATTGATACATGCTT-CAA
** *
340362 TGTATTGATACATTATTCAT
1 TGTATTGATACATGCTTCAA
340382 TGTATTGATACAT
1 TGTATTGATACAT
340395 TTGAGTTTTT
Statistics
Matches: 43, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
20 15 0.35
21 28 0.65
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (20 bp):
TGTATTGATACATGCTTCAA
Found at i:341363 original size:21 final size:20
Alignment explanation
Indices: 341328--341366 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
341318 TGTTAACAGC
341328 CCATGTCCATGCATTTTATG
1 CCATGTCCATGCATTTTATG
*
341348 CCATGTTCCGTGCATTTTA
1 CCATG-TCCATGCATTTTA
341367 ACATGTCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.18, C:0.26, G:0.15, T:0.41
Consensus pattern (20 bp):
CCATGTCCATGCATTTTATG
Found at i:367379 original size:43 final size:42
Alignment explanation
Indices: 367212--367405 Score: 174
Period size: 43 Copynumber: 4.5 Consensus size: 42
367202 AAAGTGATAC
* * *
367212 CGATAAAGTCAACTAAGGGT-AAAGAAGGTGACCAAGGCAACAC
1 CGATAAAGTCAACTAAGGGTAAAAGAA--TTACCAAGGCAAAAT
* * * *
367255 CGATAAAGTCAACTGAGGGTAAAAGAGTTAACGAGGGCAAAAT
1 CGATAAAGTCAACTAAGGGTAAAAGAATT-ACCAAGGCAAAAT
* * * * * *
367298 CGATAAAGTCAACTAAAGTTAAAGGAGTTAATCGAGGCAAAAT
1 CGATAAAGTCAACTAAGGGTAAAAGAATT-ACCAAGGCAAAAT
* *
367341 CGATAAAGTCAACTAAGGGTAGAGGAATTACTCAAGGCAAAAT
1 CGATAAAGTCAACTAAGGGTAAAAGAATTAC-CAAGGCAAAAT
* * *
367384 TGATAAAGTTAACTAAGAGTAA
1 CGATAAAGTCAACTAAGGGTAA
367406 TGGGATTGGC
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
42 2 0.02
43 116 0.94
44 5 0.04
ACGTcount: A:0.45, C:0.13, G:0.24, T:0.18
Consensus pattern (42 bp):
CGATAAAGTCAACTAAGGGTAAAAGAATTACCAAGGCAAAAT
Found at i:367380 original size:86 final size:86
Alignment explanation
Indices: 367212--367399 Score: 207
Period size: 86 Copynumber: 2.2 Consensus size: 86
367202 AAAGTGATAC
* * * *
367212 CGATAAAGTCAACTAAGGGTAAAGAAGGTGACCAAGGCAACACCGATAAAGTCAACTGAGGGTAA
1 CGATAAAGTCAACTAAAGGTAAAGAAGGTAACCAAGGCAAAACCGATAAAGTCAACTAAGGGTAA
* * *
367277 AAGAGTTAACGAGGGCAAAAT
66 AAGAATTAACCAAGGCAAAAT
* * * * * * *
367298 CGATAAAGTCAACTAAAGTTAAAGGAGTTAATCGAGGCAAAATCGATAAAGTCAACTAAGGGTAG
1 CGATAAAGTCAACTAAAGGTAAAGAAGGTAACCAAGGCAAAACCGATAAAGTCAACTAAGGGTAA
*
367363 AGGAATT-ACTCAAGGCAAAAT
66 AAGAATTAAC-CAAGGCAAAAT
* *
367384 TGATAAAGTTAACTAA
1 CGATAAAGTCAACTAA
367400 GAGTAATGGG
Statistics
Matches: 84, Mismatches: 17, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
85 2 0.02
86 82 0.98
ACGTcount: A:0.45, C:0.13, G:0.23, T:0.18
Consensus pattern (86 bp):
CGATAAAGTCAACTAAAGGTAAAGAAGGTAACCAAGGCAAAACCGATAAAGTCAACTAAGGGTAA
AAGAATTAACCAAGGCAAAAT
Found at i:367424 original size:43 final size:41
Alignment explanation
Indices: 367332--367726 Score: 182
Period size: 41 Copynumber: 9.6 Consensus size: 41
367322 GAGTTAATCG
* * *
367332 AGGCAAAA-TCGATAAAGTCAACTAAGGGTAGAGGAATT-ACTCA
1 AGGCAAAACT-GATAAAGCCAAC-AA-GGTAGAGGGATTGGCT-A
* **
367375 AGGCAAAATTGATAAAGTTAACTAAGAGTA-ATGGGATTGGCT-
1 AGGCAAAACTGATAAAGCCAAC-AAG-GTAGA-GGGATTGGCTA
*
367417 AGCGCAAAACTGATAAAGCCAACAAGTTAGAGGGATTGGCTA
1 AG-GCAAAACTGATAAAGCCAACAAGGTAGAGGGATTGGCTA
* * * *
367459 AGGCAAAACTGATAAAGCTAA-TAGGTTAAATGGG-TTGGTTA
1 AGGCAAAACTGATAAAGCCAACAAGG-TAGA-GGGATTGGCTA
* ** ** * * * *
367500 GGGTGAAACCAATAAAGTCAACAAGTTAGAGGGTTTGGCCA
1 AGGCAAAACTGATAAAGCCAACAAGGTAGAGGGATTGGCTA
* * * * * *
367541 AGGC-GAA-TGATAAAACTAACAAGTTAGAGGGGTTGGCCA
1 AGGCAAAACTGATAAAGCCAACAAGGTAGAGGGATTGGCTA
** ** * * *
367580 AGGCAAAACCAATAAAGTTAACAAGTTAAAGGGGTTGGCTA
1 AGGCAAAACTGATAAAGCCAACAAGGTAGAGGGATTGGCTA
* * * * **
367621 GGGCAAAACTGATAAAGCTAA-TAGGTTAGAGGGGTTAACTA
1 AGGCAAAACTGATAAAGCCAACAAGG-TAGAGGGATTGGCTA
* * * * *
367662 A-GCTCAAATTGATAAAGTCAACTAGTTAGAGAGG-TTGGCTA
1 AGGC-AAAACTGATAAAGCCAACAAGGTAGAG-GGATTGGCTA
* *
367703 AGGCGAAACTGATGAAGCCAACAA
1 AGGCAAAACTGATAAAGCCAACAA
367727 TTTAGAGAGG
Statistics
Matches: 272, Mismatches: 62, Indels: 38
0.73 0.17 0.10
Matches are distributed among these distances:
39 30 0.11
40 13 0.05
41 157 0.58
42 22 0.08
43 47 0.17
44 3 0.01
ACGTcount: A:0.40, C:0.12, G:0.27, T:0.21
Consensus pattern (41 bp):
AGGCAAAACTGATAAAGCCAACAAGGTAGAGGGATTGGCTA
Found at i:367465 original size:41 final size:40
Alignment explanation
Indices: 367411--368628 Score: 394
Period size: 41 Copynumber: 29.9 Consensus size: 40
367401 AGTAATGGGA
367411 TTGGCT-AGCGCAAAACTGATAAAGCCAACAAGTTAGAGGG
1 TTGGCTAAG-GCAAAACTGATAAAGCCAACAAGTTAGAGGG
* * * *
367451 ATTGGCTAAGGCAAAACTGATAAAGCTAATAGGTTAAATGGG
1 -TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGA-GGG
* * ** ** *
367493 TTGGTTAGGGTGAAACCAATAAAGTCAACAAGTTAGAGGG
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGAGGG
* * * *
367533 TTTGGCCAAGGC-GAA-TGATAAAACTAACAAGTTAGAGGGG
1 -TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGA-GGG
* ** ** *
367573 TTGGCCAAGGCAAAACCAATAAAGTTAACAAGTTAAAGGGG
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGA-GGG
* * * *
367614 TTGGCTAGGGCAAAACTGATAAAGCTAATAGGTTAGAGGGG
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGA-GGG
** * * * *
367655 TTAACTAA-GCTCAAATTGATAAAGTCAACTAGTTAGAGAGG
1 TTGGCTAAGGC-AAAACTGATAAAGCCAACAAGTTAGAG-GG
* * *
367696 TTGGCTAAGGCGAAACTGATGAAGCCAACAATTTAGAGAGG
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGAG-GG
** * ** ** * *
367737 TTAACCAAGGTGAAACCAATAAAATCAAACAA-TTAGAGAGG
1 TTGGCTAAGGCAAAACTGAT-AAAGCCAACAAGTTAGAG-GG
* * * ** * *
367778 CTGGCTAGGGCGAAACCAATAAAGCTAACAAGTTAAAGGGG
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGA-GGG
* * * * *
367819 TTGACT-AGGGAAAATTTAATAAAGTCAACCAA-TTAGAGAGG
1 TTGGCTAAGGCAAAA-CTGATAAAGCCAA-CAAGTTAGAG-GG
** * ** * *
367860 TTACCTAGGGTGAAACCGATAAAGCCAACAAGTT-GAAAGG
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAG-AGGG
* * * * * * *
367900 TTGACTAGAGTG-ACATC-AATAAAGTCAACCAGTTAGAGAGA
1 TTGGCTA-AG-GCAAAACTGATAAAGCCAACAAGTTAGAG-GG
* * ** *
367941 TTGGCCATGGTGAAACCGATAAAGCCAACAAGTTAGATGGG
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGA-GGG
* * *** *
367982 TTGACTAGGGCAAAACTGATAAAATTAACCAGTTAGAGAGG
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGAG-GG
* * * * * *
368023 TTGCCCAGGGCAAAA-TCGATAAAGCCAATAAATTAAAGAGG
1 TTGGCTAAGGCAAAACT-GATAAAGCCAACAAGTTAGAG-GG
* ** * ** * *
368064 TTGAGC-AGGGTGAAACCGATAAAGTTAACTAGATAGAGAGG
1 TTG-GCTAAGGCAAAACTGATAAAGCCAACAAGTTAGAG-GG
* * * *
368105 TTAGCCT-AGGCAAAA-TCGATAAAACCAACAACTTAAAAGGG
1 TT-GGCTAAGGCAAAACT-GATAAAGCCAACAAGTT-AGAGGG
** * ** * ** * *
368146 TTAACCAAGGTGAAATTGATAAATTCAGCCAGTTAGAGAGG
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGAG-GG
* * * *
368187 TTGGCTAGGGTAAAA-TCAATAAAACCAACAAGTTAGAGGG
1 TTGGCTAAGGCAAAACT-GATAAAGCCAACAAGTTAGAGGG
** * * * * *
368227 TTGATTAGGGAAAAACTGATAAAACCAACCACTTAGAGAGG
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGAG-GG
* **
368268 TTGGCCAAGGTGAAACTGATAAAGCCAACAAGTTAGACGGG
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGA-GGG
* * ** **
368309 TTGACTAGGGTGAAACTGATAAAATCAACAAGTTAGAGAGG
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGAG-GG
* * * *
368350 TTGCCCAGGGTAAAATCT-ATAAAGCCAAC-AGATTAGAGAGG
1 TTGGCTAAGGCAAAA-CTGATAAAGCCAACAAG-TTAGAG-GG
* * * * *
368391 TTGAGC-AGGGCGAAACTGATAAAGTCAACCAGATAGAGAGG
1 TTG-GCTAAGGCAAAACTGATAAAGCCAACAAGTTAGAG-GG
* * *
368432 TTAGCCT-AGGCAAAA-TCGATAAAACTAACAAGTTAGAGGGG
1 TT-GGCTAAGGCAAAACT-GATAAAGCCAACAAGTTAGA-GGG
** * ** *** ** *
368473 TTAACCAAGGTGAAAC-GATAAAGTTGACCTGTTAGATAGG
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGA-GGG
* *
368513 TTGGCT-AGAGCAAAA-TCAATAAAACCAACAAGTTAGAGGG
1 TTGGCTAAG-GCAAAACT-GATAAAGCCAACAAGTTAGAGGG
* * * * *
368553 TTGACTAGGGTAAAACTGATAAAACCAACCAGTTAGAGAGG
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGAG-GG
*** * *
368594 TTGGCCGGGGTAAAACTAATAAAGCCAACAAGTTA
1 TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTA
368629 AAAAGGTTGA
Statistics
Matches: 866, Mismatches: 253, Indels: 116
0.70 0.20 0.09
Matches are distributed among these distances:
39 30 0.03
40 158 0.18
41 638 0.74
42 40 0.05
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.20
Consensus pattern (40 bp):
TTGGCTAAGGCAAAACTGATAAAGCCAACAAGTTAGAGGG
Found at i:367691 original size:162 final size:165
Alignment explanation
Indices: 367437--367825 Score: 428
Period size: 162 Copynumber: 2.4 Consensus size: 165
367427 TGATAAAGCC
* * * ** *
367437 AACAAGTTAGAGGGATTGGCTAAGGCAAAACTGATAAAGCTAATAGGTTAAATGGGTTGGTTAGG
1 AACAAGTTAGAGGGGTTGGCTAGGGCAAAACTGATAAAGCTAATAGGTTAAAGGGGTTGACTAAG
* * *
367502 GTGAAACCAATAAAGTCAACAAGTTAGAG-GGTTTGGCCAAGGCG-AA-TGATAAAACTAACAAG
66 CTCAAACCAATAAAGTCAACAAGTTAGAGAGG-TTGGCCAAGGCGAAACTGATAAAACCAACAAG
* ** * *
367564 TTAGAGGGGTTGGCCAAGGCAAAACCAATAAAGT-T
130 TTAGAGAGGTTAACCAAGGCAAAACCAATAAAATCA
* * *
367599 AACAAGTTAAAGGGGTTGGCTAGGGCAAAACTGATAAAGCTAATAGGTTAGAGGGGTTAACTAAG
1 AACAAGTTAGAGGGGTTGGCTAGGGCAAAACTGATAAAGCTAATAGGTTAAAGGGGTTGACTAAG
*** * * * * *
367664 CTCAAATTGATAAAGTCAACTAGTTAGAGAGGTTGGCTAAGGCGAAACTGATGAAGCCAACAATT
66 CTCAAACCAATAAAGTCAACAAGTTAGAGAGGTTGGCCAAGGCGAAACTGATAAAACCAACAAGT
**
367729 TAGAGAGGTTAACCAAGGTGAAACCAATAAAATCA
131 TAGAGAGGTTAACCAAGGCAAAACCAATAAAATCA
* * * ** * *
367764 AACAA-TTAGAGAGGCTGGCTAGGGCGAAACCAATAAAGCTAACAAGTTAAAGGGGTTGACTA
1 AACAAGTTAGAGGGGTTGGCTAGGGCAAAACTGATAAAGCTAATAGGTTAAAGGGGTTGACTA
367826 GGGAAAATTT
Statistics
Matches: 186, Mismatches: 37, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
162 90 0.48
163 4 0.02
164 87 0.47
165 5 0.03
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.21
Consensus pattern (165 bp):
AACAAGTTAGAGGGGTTGGCTAGGGCAAAACTGATAAAGCTAATAGGTTAAAGGGGTTGACTAAG
CTCAAACCAATAAAGTCAACAAGTTAGAGAGGTTGGCCAAGGCGAAACTGATAAAACCAACAAGT
TAGAGAGGTTAACCAAGGCAAAACCAATAAAATCA
Found at i:367868 original size:82 final size:82
Alignment explanation
Indices: 367549--368628 Score: 617
Period size: 82 Copynumber: 13.2 Consensus size: 82
367539 CAAGGCGAAT
* * * * * ** * * * *
367549 GATAAAACTAACAAGTTAGAGGGGTTGGCCAAGGCAAAACCAATAAAGTTAA-CAAGTTAAAGGG
1 GATAAAGCCAACAAGTTAGAGGGGTTGACTAGGGCAAAACTGATAAAATCAACCAA-TTAGAGAG
* *
367613 GTTGGCTAGGGCAAAA-C
65 GTTGCCTAGGGTAAAATC
* * * * * * * * * *
367630 TGATAAAGCTAATAGGTTAGAGGGGTTAACTA-AGCTCAAATTGATAAAGTCAACTAGTTAGAGA
1 -GATAAAGCCAACAAGTTAGAGGGGTTGACTAGGGC-AAAACTGATAAAATCAACCAATTAGAGA
* *
367694 GGTTGGCTAAGGCG-AAACT-
64 GGTTGCCT-AGG-GTAAAATC
* * * * * * ** ** *
367713 GATGAAGCCAACAATTTAGAGAGGTTAACCAAGGTGAAACCAATAAAATCAAACAATTAGAGAGG
1 GATAAAGCCAACAAGTTAGAGGGGTTGACTAGGGCAAAACTGATAAAATCAACCAATTAGAGAGG
* * ** *
367778 CTGGCTAGGGCGAAACC
66 TTGCCTAGGGTAAAATC
* * * * * *
367795 AATAAAGCTAACAAGTTAAAGGGGTTGACTAGGG-AAAATTTAATAAAGTCAACCAATTAGAGAG
1 GATAAAGCCAACAAGTTAGAGGGGTTGACTAGGGCAAAA-CTGATAAAATCAACCAATTAGAGAG
* * *
367859 GTTACCTAGGGTGAAACC
65 GTTGCCTAGGGTAAAATC
** * * * * *
367877 GATAAAGCCAACAAGTT-GAAAGGTTGACTAGAGTG-ACATC-AATAAAGTCAACCAGTTAGAGA
1 GATAAAGCCAACAAGTTAGAGGGGTTGACTAG-G-GCAAAACTGATAAAATCAACCAATTAGAGA
* * * *
367939 GATTGGCC-ATGGTGAAACC
64 GGTT-GCCTAGGGTAAAATC
* * *
367958 GATAAAGCCAACAAGTTAGATGGGTTGACTAGGGCAAAACTGATAAAATTAACCAGTTAGAGAGG
1 GATAAAGCCAACAAGTTAGAGGGGTTGACTAGGGCAAAACTGATAAAATCAACCAATTAGAGAGG
* *
368023 TTGCCCAGGGCAAAATC
66 TTGCCTAGGGTAAAATC
* * * * ** * * * *
368040 GATAAAGCCAATAAATTAAAGAGGTTGAGC-AGGGTGAAACCGATAAAGTTAACTAGA-TAGAGA
1 GATAAAGCCAACAAGTTAGAGGGGTTGA-CTAGGGCAAAACTGATAAAATCAACCA-ATTAGAGA
*
368103 GGTTAGCCTA-GGCAAAATC
64 GGTT-GCCTAGGGTAAAATC
* * * * * * * ** * * * *
368122 GATAAAACCAACAACTTAAAAGGGTTAACCAAGGTGAAATTGATAAATTCAGCCAGTTAGAGAGG
1 GATAAAGCCAACAAGTTAGAGGGGTTGACTAGGGCAAAACTGATAAAATCAACCAATTAGAGAGG
*
368187 TTGGCTAGGGTAAAATC
66 TTGCCTAGGGTAAAATC
* * * * * *
368204 AATAAAACCAACAAGTTAGA-GGGTTGATTAGGGAAAAACTGATAAAACCAACCACTTAGAGAGG
1 GATAAAGCCAACAAGTTAGAGGGGTTGACTAGGGCAAAACTGATAAAATCAACCAATTAGAGAGG
* *
368268 TTGGCC-AAGGTGAAA-C
66 TT-GCCTAGGGTAAAATC
* **
368284 TGATAAAGCCAACAAGTTAGACGGGTTGACTAGGGTGAAACTGATAAAATCAA-CAAGTTAGAGA
1 -GATAAAGCCAACAAGTTAGAGGGGTTGACTAGGGCAAAACTGATAAAATCAACCAA-TTAGAGA
*
368348 GGTTGCCCAGGGTAAAATC
64 GGTTGCCTAGGGTAAAATC
* * * *
368367 TATAAAGCCAAC-AGATTAGAGAGGTTGAGC-AGGGCGAAACTGATAAAGTCAACCAGA-TAGAG
1 GATAAAGCCAACAAG-TTAGAGGGGTTGA-CTAGGGCAAAACTGATAAAATCAACCA-ATTAGAG
*
368429 AGGTTAGCCTA-GGCAAAATC
63 AGGTT-GCCTAGGGTAAAATC
* * * * * ** * ** ** *
368449 GATAAAACTAACAAGTTAGAGGGGTTAACCAAGGTGAAAC-GATAAAGTTGACCTGTTAGATAGG
1 GATAAAGCCAACAAGTTAGAGGGGTTGACTAGGGCAAAACTGATAAAATCAACCAATTAGAGAGG
* * *
368513 TTGGCTAGAGCAAAATC
66 TTGCCTAGGGTAAAATC
* * * * *
368530 AATAAAACCAACAAGTTAGA-GGGTTGACTAGGGTAAAACTGATAAAACCAACCAGTTAGAGAGG
1 GATAAAGCCAACAAGTTAGAGGGGTTGACTAGGGCAAAACTGATAAAATCAACCAATTAGAGAGG
*
368594 TTGGCC-GGGGTAAAA-C
66 TT-GCCTAGGGTAAAATC
*
368610 TAATAAAGCCAACAAGTTA
1 -GATAAAGCCAACAAGTTA
368629 AAAAGGTTGA
Statistics
Matches: 786, Mismatches: 172, Indels: 81
0.76 0.17 0.08
Matches are distributed among these distances:
80 23 0.03
81 241 0.31
82 494 0.63
83 26 0.03
84 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.20
Consensus pattern (82 bp):
GATAAAGCCAACAAGTTAGAGGGGTTGACTAGGGCAAAACTGATAAAATCAACCAATTAGAGAGG
TTGCCTAGGGTAAAATC
Found at i:368217 original size:327 final size:325
Alignment explanation
Indices: 367837--368664 Score: 1061
Period size: 327 Copynumber: 2.5 Consensus size: 325
367827 GGAAAATTTA
* * ** * * * * *
367837 ATAAAGTCAACCAATTAGAGAGGTTACCTAGGGTGAAACCGATAAAGCCAACAAGTT-GAAAGGT
1 ATAAATTC-ACCAGTTAGAGAGGTTGGCTAGGGTAAAATCAATAAAACCAACAAGTTAG-AGGGT
* * * ** * * *
367901 TGACTAGAGTGACATC-AATAAAGTCAACCAGTTAGAGAGATTGGCCATGGTGAAACCGATAAAG
64 TGACTAG-GTGAAAACTGATAAAACCAACCAGTTAGAGAGGTTGGCCAAGGTGAAACTGATAAAG
* *
367965 CCAACAAGTTAGATGGGTTGACTAGGGCAAAACTGATAAAATTAACCAGTTAGAGAGGTTGCCCA
128 CCAACAAGTTAGAAGGGTTGACTAGGGAAAAACTGATAAAATTAACCAGTTAGAGAGGTTGCCCA
* * * *
368030 GGGCAAAATCGATAAAGCCAATAAATTAAAGAGGTTGAGCAGGGTGAAACCGATAAAGTTAACTA
193 GGGCAAAATCGATAAAGCCAACAAATTAAAGAGGTTGAGCAGGGCGAAACCGATAAAGTCAACCA
368095 GATAGAGAGGTTAGCCTAGGCAAAATCGATAAAACCAACAACTTAAAAGGGTTAACCAAGGTGAA
258 GATAGAGAGGTTAGCCTAGGCAAAATCGATAAAACCAACAACTTAAAAGGGTTAACCAAGGTGAA
*
368160 ATTG
323 A-CG
368164 ATAAATTCAGCCAGTTAGAGAGGTTGGCTAGGGTAAAATCAATAAAACCAACAAGTTAGAGGGTT
1 ATAAATTCA-CCAGTTAGAGAGGTTGGCTAGGGTAAAATCAATAAAACCAACAAGTTAGAGGGTT
* *
368229 GATTAGG-GAAAAACTGATAAAACCAACCACTTAGAGAGGTTGGCCAAGGTGAAACTGATAAAGC
65 GACTAGGTG-AAAACTGATAAAACCAACCAGTTAGAGAGGTTGGCCAAGGTGAAACTGATAAAGC
* ** * *
368293 CAACAAGTTAGACGGGTTGACTAGGGTGAAACTGATAAAATCAACAAGTTAGAGAGGTTGCCCAG
129 CAACAAGTTAGAAGGGTTGACTAGGGAAAAACTGATAAAATTAACCAGTTAGAGAGGTTGCCCAG
* * * * *
368358 GGTAAAATCTATAAAGCCAACAGATTAGAGAGGTTGAGCAGGGCGAAACTGATAAAGTCAACCAG
194 GGCAAAATCGATAAAGCCAACAAATTAAAGAGGTTGAGCAGGGCGAAACCGATAAAGTCAACCAG
* * * *
368423 ATAGAGAGGTTAGCCTAGGCAAAATCGATAAAACTAACAAGTTAGAGGGGTTAACCAAGGTGAAA
259 ATAGAGAGGTTAGCCTAGGCAAAATCGATAAAACCAACAACTTAAAAGGGTTAACCAAGGTGAAA
368488 CG
324 CG
* * * * *
368490 ATAAAGTTGACCTGTTAGATAGGTTGGCTAGAGCAAAATCAATAAAACCAACAAGTTAGAGGGTT
1 ATAAA-TTCACCAGTTAGAGAGGTTGGCTAGGGTAAAATCAATAAAACCAACAAGTTAGAGGGTT
** * *
368555 GACTAGG-GTAAAACTGATAAAACCAACCAGTTAGAGAGGTTGGCCGGGGTAAAACTAATAAAGC
65 GACTAGGTG-AAAACTGATAAAACCAACCAGTTAGAGAGGTTGGCCAAGGTGAAACTGATAAAGC
* * * ** *
368619 CAACAAGTTAAAAAGGTTGACCAGGGAAAAACAAATAAAGTTAACC
129 CAACAAGTTAGAAGGGTTGACTAGGGAAAAACTGATAAAATTAACC
368665 CTCTAACTGG
Statistics
Matches: 435, Mismatches: 61, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
325 1 0.00
326 154 0.35
327 279 0.64
328 1 0.00
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.19
Consensus pattern (325 bp):
ATAAATTCACCAGTTAGAGAGGTTGGCTAGGGTAAAATCAATAAAACCAACAAGTTAGAGGGTTG
ACTAGGTGAAAACTGATAAAACCAACCAGTTAGAGAGGTTGGCCAAGGTGAAACTGATAAAGCCA
ACAAGTTAGAAGGGTTGACTAGGGAAAAACTGATAAAATTAACCAGTTAGAGAGGTTGCCCAGGG
CAAAATCGATAAAGCCAACAAATTAAAGAGGTTGAGCAGGGCGAAACCGATAAAGTCAACCAGAT
AGAGAGGTTAGCCTAGGCAAAATCGATAAAACCAACAACTTAAAAGGGTTAACCAAGGTGAAACG
Found at i:368753 original size:244 final size:245
Alignment explanation
Indices: 368286--368756 Score: 515
Period size: 244 Copynumber: 1.9 Consensus size: 245
368276 GGTGAAACTG
* * *
368286 ATAAAGCCAACAAGTTAGACGGGTTGACTAGGGTGAAACTGATAAAATCAACAAGTTAGAGAGGT
1 ATAAAACCAACAAGTTAGACGGGTTGACTAGGGTAAAACTGATAAAACCAACAAGTTAGAGAGGT
* * * ** **
368351 TGCCCAGGGTAAAATCTATAAAGCCAACAGATTAGAGAGGTTGAGCAGGGCGAAACTGATAAAGT
66 TGCCCAGGGTAAAATCTATAAAGCCAACAGATTAAAAAGGTTGACCAGGGAAAAACAAATAAAGT
* * * * *
368416 CAACCAGATAGAGAGGTTAGCCTAGGCAAAATCGATAAAACTAACAAGTTAGAGGGGTTAACCAA
131 CAACCAGATAGACAGGTTAGCCTAGGCAAAACCAATAAAACCAACAAGTTAGAGGGGTCAACCAA
*** * * *
368481 GGTGAAACGATAAAGTTGACCTGTTAGATAGGTTGGCTAGAGCAAAATCA
196 GCAAAAACAATAAAGTTCAACTGTTAGATAGGTTGGCTAGAGCAAAATCA
*
368531 ATAAAACCAACAAGTTAGA-GGGTTGACTAGGGTAAAACTGATAAAACCAACCAGTTAGAGAGGT
1 ATAAAACCAACAAGTTAGACGGGTTGACTAGGGTAAAACTGATAAAACCAACAAGTTAGAGAGGT
* *
368595 TGGCCGGGGTAAAA-CTAATAAAGCCAACA-AGTTAAAAAGGTTGACCAGGGAAAAACAAATAAA
66 TGCCCAGGGTAAAATCT-ATAAAGCCAACAGA-TTAAAAAGGTTGACCAGGGAAAAACAAATAAA
* *** * ** * * *
368658 GTTAACCCTCTA-ACTGGCTT-GGTTAGGGCGAAACCAATAAAGCCAACAAGTTAGA-GGGTCGA
129 GTCAACCAGATAGACAGG-TTAGCCTA-GGCAAAACCAATAAAACCAACAAGTTAGAGGGGTCAA
* *
368720 CTAGAGCAAAAACAATCAAG-TCAACTAGTTAGATAGG
192 CCA-AGCAAAAACAATAAAGTTCAACT-GTTAGATAGG
368757 GTTGACCAAG
Statistics
Matches: 184, Mismatches: 36, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
243 20 0.11
244 146 0.79
245 18 0.10
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.19
Consensus pattern (245 bp):
ATAAAACCAACAAGTTAGACGGGTTGACTAGGGTAAAACTGATAAAACCAACAAGTTAGAGAGGT
TGCCCAGGGTAAAATCTATAAAGCCAACAGATTAAAAAGGTTGACCAGGGAAAAACAAATAAAGT
CAACCAGATAGACAGGTTAGCCTAGGCAAAACCAATAAAACCAACAAGTTAGAGGGGTCAACCAA
GCAAAAACAATAAAGTTCAACTGTTAGATAGGTTGGCTAGAGCAAAATCA
Found at i:368794 original size:326 final size:327
Alignment explanation
Indices: 367925--368772 Score: 859
Period size: 327 Copynumber: 2.6 Consensus size: 327
367915 TCAATAAAGT
* * * * ** * ** *
367925 CAACCAGTTAGAGAGATTGGCCATGGTGAAACCGATAAAGCCAACAAGTTAGATGGGTTGACTAG
1 CAACCACTTAGAGAGGTTGGCCAAGGTAAAACTAATAAAGCCAACAAGTTAAAAAGGTTGACCAG
* ** * * * * * * * *
367990 GGCAAAACTGATAAAATTAACCAGTTAGAGAGGTTGCCCAGGGCAAAATCGATAAAGCCAATAAA
66 GGAAAAACAAATAAAATCAACAACTTAGACAGGTTGCCCAGGGCAAAACCAATAAAGCCAACAGA
* * * ** ** * * *
368055 TTAAAGAGGTTGAGCAGGGTGAAACCGATAAAGTTAACTAGATAGAGAGGTTAGCCTAGGCAAAA
131 TTAGAGAGGTCGAGCAGAGCAAAACTAATAAAGTCAACCAGATAGAGAGGTTAGCCAAGGCAAAA
* * * * *
368120 TCGATAAAACCAACAACTTAAAAGGGTTAACCAAGGTGAAATTGATAAATTCAGCCAGTTAGAGA
196 TCGATAAAACTAACAAGTTAGAGGGGTTAACCAAGGTGAAATCGATAAATTCAGCCAGTTAGAGA
* * *
368185 GGTTGGCTAGGGTAAAATCAATAAAACCAACAAGTTAGAGGGTTGATTAGGGAAAAACTGATAAA
261 GGTTGGCTAGAGCAAAATCAATAAAACCAACAAGTTAGAGGGTTGACTAGGGAAAAACTGATAAA
368250 AC
326 AC
* * * ** *
368252 CAACCACTTAGAGAGGTTGGCCAAGGTGAAACTGATAAAGCCAACAAGTTAGACGGGTTGACTAG
1 CAACCACTTAGAGAGGTTGGCCAAGGTAAAACTAATAAAGCCAACAAGTTAAAAAGGTTGACCAG
** ** * * * * *
368317 GGTGAAACTGATAAAATCAACAAGTTAGAGAGGTTGCCCAGGGTAAAATCTATAAAGCCAACAGA
66 GGAAAAACAAATAAAATCAACAACTTAGACAGGTTGCCCAGGGCAAAACCAATAAAGCCAACAGA
* * * * *
368382 TTAGAGAGGTTGAGCAGGGCGAAACTGATAAAGTCAACCAGATAGAGAGGTTAGCCTAGGCAAAA
131 TTAGAGAGGTCGAGCAGAGCAAAACTAATAAAGTCAACCAGATAGAGAGGTTAGCCAAGGCAAAA
* * *
368447 TCGATAAAACTAACAAGTTAGAGGGGTTAACCAAGGTGAAA-CGATAAAGTTGA-CCTGTTAGAT
196 TCGATAAAACTAACAAGTTAGAGGGGTTAACCAAGGTGAAATCGATAAA-TTCAGCCAGTTAGAG
*
368510 AGGTTGGCTAGAGCAAAATCAATAAAACCAACAAGTTAGAGGGTTGACTAGGGTAAAACTGATAA
260 AGGTTGGCTAGAGCAAAATCAATAAAACCAACAAGTTAGAGGGTTGACTAGGGAAAAACTGATAA
368575 AAC
325 AAC
* **
368578 CAACCAGTTAGAGAGGTTGGCCGGGGTAAAACTAATAAAGCCAACAAGTTAAAAAGGTTGACCAG
1 CAACCACTTAGAGAGGTTGGCCAAGGTAAAACTAATAAAGCCAACAAGTTAAAAAGGTTGACCAG
* * * * *** *
368643 GGAAAAACAAATAAAGTTAAC-CCTCTA-ACTGGCTTGGTTAGGGCGAAACCAATAAAGCCAACA
66 GGAAAAACAAATAAAATCAACAACT-TAGACAGG-TTGCCCAGGGCAAAACCAATAAAGCCAACA
* * * *
368706 -AGTTAGAG-GGTCGA-CTAGAGCAAAAAC-AATCAAGTCAACTAGTTAGATAGGGTT-GACCAA
129 GA-TTAGAGAGGTCGAGC-AGAGC-AAAACTAATAAAGTCAACCAGATAGAGA-GGTTAG-CCAA
368766 GGCAAAA
189 GGCAAAA
368773 CTATTAAAGT
Statistics
Matches: 448, Mismatches: 65, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
324 1 0.00
325 32 0.07
326 198 0.44
327 217 0.48
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.19
Consensus pattern (327 bp):
CAACCACTTAGAGAGGTTGGCCAAGGTAAAACTAATAAAGCCAACAAGTTAAAAAGGTTGACCAG
GGAAAAACAAATAAAATCAACAACTTAGACAGGTTGCCCAGGGCAAAACCAATAAAGCCAACAGA
TTAGAGAGGTCGAGCAGAGCAAAACTAATAAAGTCAACCAGATAGAGAGGTTAGCCAAGGCAAAA
TCGATAAAACTAACAAGTTAGAGGGGTTAACCAAGGTGAAATCGATAAATTCAGCCAGTTAGAGA
GGTTGGCTAGAGCAAAATCAATAAAACCAACAAGTTAGAGGGTTGACTAGGGAAAAACTGATAAA
AC
Found at i:368812 original size:326 final size:327
Alignment explanation
Indices: 367925--368821 Score: 835
Period size: 326 Copynumber: 2.7 Consensus size: 327
367915 TCAATAAAGT
* * * * ** * ** *
367925 CAACCAGTTAGAGAGATTGGCCATGGTGAAACCGATAAAGCCAACAAGTTAGATGGGTTGACTAG
1 CAACCACTTAGAGAGGTTGGCCAAGGTAAAACTAATAAAGCCAACAAGTTAAAAAGGTTGACCAG
* ** * * * * * * * *
367990 GGCAAAACTGATAAAATTAACCAGTTAGAGAGGTTGCCCAGGGCAAAATCGATAAAGCCAATAAA
66 GGAAAAACAAATAAAATCAACAACTTAGACAGGTTGCCCAGGGCAAAACCAATAAAGCCAACAGA
* * * ** ** * * *
368055 TTAAAGAGGTTGAGCAGGGTGAAACCGATAAAGTTAACTAGATAGAGAGGTTAGCCTAGGCAAAA
131 TTAGAGAGGTCGAGCAGAGCAAAACTAATAAAGTCAACCAGATAGAGAGGTTAGCCAAGGCAAAA
* * * * * *
368120 TCGATAAAACCAACAACTTA-AAAGGGTTAACCAAGGTGAAATTGATAAA-TTCAGCCAGTTAGA
196 TCGATAAAACTAACAAGTTAGAAA-AGTTAACCAAGGTGAAACTGATAAAGTTGA-CCTGTTAGA
* * *
368183 GAGGTTGGCTAGGGTAAAATCAATAAAACCAACAAGTTAGAGGGTTGATTAGGGAAAAACTGATA
259 GAGGTTGGCTAGAGCAAAATCAATAAAACCAACAAGTTAGAGGGTTGACTAGGGAAAAACTGATA
368248 AAAC
324 AAAC
* * * ** *
368252 CAACCACTTAGAGAGGTTGGCCAAGGTGAAACTGATAAAGCCAACAAGTTAGACGGGTTGACTAG
1 CAACCACTTAGAGAGGTTGGCCAAGGTAAAACTAATAAAGCCAACAAGTTAAAAAGGTTGACCAG
** ** * * * * *
368317 GGTGAAACTGATAAAATCAACAAGTTAGAGAGGTTGCCCAGGGTAAAATCTATAAAGCCAACAGA
66 GGAAAAACAAATAAAATCAACAACTTAGACAGGTTGCCCAGGGCAAAACCAATAAAGCCAACAGA
* * * * *
368382 TTAGAGAGGTTGAGCAGGGCGAAACTGATAAAGTCAACCAGATAGAGAGGTTAGCCTAGGCAAAA
131 TTAGAGAGGTCGAGCAGAGCAAAACTAATAAAGTCAACCAGATAGAGAGGTTAGCCAAGGCAAAA
*** *
368447 TCGATAAAACTAACAAGTTAGAGGGGTTAACCAAGGTGAAAC-GATAAAGTTGACCTGTTAGATA
196 TCGATAAAACTAACAAGTTAGAAAAGTTAACCAAGGTGAAACTGATAAAGTTGACCTGTTAGAGA
*
368511 GGTTGGCTAGAGCAAAATCAATAAAACCAACAAGTTAGAGGGTTGACTAGGGTAAAACTGATAAA
261 GGTTGGCTAGAGCAAAATCAATAAAACCAACAAGTTAGAGGGTTGACTAGGGAAAAACTGATAAA
368576 AC
326 AC
* **
368578 CAACCAGTTAGAGAGGTTGGCCGGGGTAAAACTAATAAAGCCAACAAGTTAAAAAGGTTGACCAG
1 CAACCACTTAGAGAGGTTGGCCAAGGTAAAACTAATAAAGCCAACAAGTTAAAAAGGTTGACCAG
* * * * *** *
368643 GGAAAAACAAATAAAGTTAAC-CCTCTA-ACTGGCTTGGTTAGGGCGAAACCAATAAAGCCAACA
66 GGAAAAACAAATAAAATCAACAACT-TAGACAGG-TTGCCCAGGGCAAAACCAATAAAGCCAACA
* * * *
368706 -AGTTAGAG-GGTCGA-CTAGAGCAAAAAC-AATCAAGTCAACTAGTTAGATAGGGTT-GACCAA
129 GA-TTAGAGAGGTCGAGC-AGAGC-AAAACTAATAAAGTCAACCAGATAGAGA-GGTTAG-CCAA
* * * * ** **
368766 GGCAAAA-CTATTAAAGTCAACCAGTTAGAAAAGTTCGCTGAGGTGAAACTGATAAA
189 GGCAAAATCGATAAAACT-AACAAGTTAGAAAAGTTAACCAAGGTGAAACTGATAAA
368822 ACCAACAACT
Statistics
Matches: 483, Mismatches: 76, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
324 1 0.00
325 39 0.08
326 221 0.46
327 221 0.46
328 1 0.00
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.19
Consensus pattern (327 bp):
CAACCACTTAGAGAGGTTGGCCAAGGTAAAACTAATAAAGCCAACAAGTTAAAAAGGTTGACCAG
GGAAAAACAAATAAAATCAACAACTTAGACAGGTTGCCCAGGGCAAAACCAATAAAGCCAACAGA
TTAGAGAGGTCGAGCAGAGCAAAACTAATAAAGTCAACCAGATAGAGAGGTTAGCCAAGGCAAAA
TCGATAAAACTAACAAGTTAGAAAAGTTAACCAAGGTGAAACTGATAAAGTTGACCTGTTAGAGA
GGTTGGCTAGAGCAAAATCAATAAAACCAACAAGTTAGAGGGTTGACTAGGGAAAAACTGATAAA
AC
Found at i:369188 original size:41 final size:40
Alignment explanation
Indices: 369143--369331 Score: 148
Period size: 41 Copynumber: 4.6 Consensus size: 40
369133 GGCGAAATCG
* *
369143 ATAAAGCTAACAAATTAGAGAGGATGACTAAGGCAAAACCA
1 ATAAAGCTAACAAGTTAGAGAGGTTGAC-AAGGCAAAACCA
* * * * *
369184 ATAAA-ATCAACCAGTTACAGAGGTTGCCTAAGGCAAAATCA
1 ATAAAGCT-AACAAGTTAGAGAGGTTGAC-AAGGCAAAACCA
* * * * *
369225 ATAAAGCTAATAAGTTAGAAAGGTTGACCAGGATAAAACGGA
1 ATAAAGCTAACAAGTTAGAGAGGTTGACAAGG-CAAAAC-CA
* * * *
369267 A-AAAGTTAACTAGTTAGAGAGGTTAAACATGGCAAAACCA
1 ATAAAGCTAACAAGTTAGAGAGGTT-GACAAGGCAAAACCA
* *
369307 ATAAAGCCAACAAGTTAGAGGGGTT
1 ATAAAGCTAACAAGTTAGAGAGGTT
369332 CGTTAGGGTG
Statistics
Matches: 112, Mismatches: 30, Indels: 12
0.73 0.19 0.08
Matches are distributed among these distances:
40 6 0.05
41 99 0.88
42 7 0.06
ACGTcount: A:0.47, C:0.14, G:0.21, T:0.19
Consensus pattern (40 bp):
ATAAAGCTAACAAGTTAGAGAGGTTGACAAGGCAAAACCA
Done.