Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold119
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3173904
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 20
Found at i:860447 original size:33 final size:33
Alignment explanation
Indices: 860405--860471 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
860395 GCCAAGGAAA
***
860405 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
860438 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
860471 T
1 T
860472 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:862999 original size:28 final size:27
Alignment explanation
Indices: 862932--863000 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
862922 CTTCACAATC
**
862932 GGGGATACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCAGA
* *
862959 GGGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTA-ATCAGA
862987 GGGGATACTCCAAC
1 GGGGATACTCCAAC
863001 TCCGATTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.22
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCAGA
Found at i:863072 original size:52 final size:53
Alignment explanation
Indices: 862987--863156 Score: 172
Period size: 52 Copynumber: 3.3 Consensus size: 53
862977 TTATTTCCGA
* * *
862987 GGGGATACTCCAACTCCGATT-T-TATCGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACTCCGATTGTATTTC-CAAAAACACCAATTTTTCCACAATC
* * * **
863039 GGGGATACTCCAA-TCCTGGTTGTATTTTC-AAAACGCCAA-TTTTCCTTTAATC
1 GGGGATACTCCAACTCC-GATTGTATTTCCAAAAACACCAATTTTTCC-ACAATC
* *
863091 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT-CACAATC
1 GGGGATACTCCAACTCCGATTGTATTTCCAAAAACACCAATTTTTCCACAATC
*
863143 GAGGATACTCCAAC
1 GGGGATACTCCAAC
863157 CTCGTTATTT
Statistics
Matches: 96, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
51 9 0.09
52 67 0.70
53 14 0.15
54 6 0.06
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (53 bp):
GGGGATACTCCAACTCCGATTGTATTTCCAAAAACACCAATTTTTCCACAATC
Found at i:863140 original size:104 final size:102
Alignment explanation
Indices: 862820--863155 Score: 295
Period size: 104 Copynumber: 3.2 Consensus size: 102
862810 ATTAATTCTC
* * * * *
862820 CACAATCGCGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTT-CTATAATCGGGGAT
1 CACAATCGGGGATACTCCAA-TCCG-GTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
*
862884 ACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTT
64 ACTCCAACTCCGATTTTATTTCC-AAAAACACCAATTT-TT
* * * ** * * * ** * *
862925 CACAATCGGGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAA--CCCCGTTATTTCCGAG
1 CACAATCGGGGATACTCCAATCCGGTTTATTTTC---AAAACACCAATTTTCCTTTA-AT-C--G
* *
862988 GGGATACTCCAACTCCGATTTTA--TCGCTAAAACACTAATTTTT
59 GGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAATTTTT
*
863031 CCACAATCGGGGATACTCCAATCCTGGTTGTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGA
1 -CACAATCGGGGATACTCCAATCC-GGTT-TATTTTCAAAACACCAATTTTCCTTTAATCGGGGA
*
863096 TACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
63 TACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
*
863136 CACAATCGAGGATACTCCAA
1 CACAATCGGGGATACTCCAA
863156 CCTCGTTATT
Statistics
Matches: 179, Mismatches: 36, Indels: 33
0.72 0.15 0.13
Matches are distributed among these distances:
103 6 0.03
104 45 0.25
105 35 0.20
106 19 0.11
107 38 0.21
108 9 0.05
109 27 0.15
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.31
Consensus pattern (102 bp):
CACAATCGGGGATACTCCAATCCGGTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATAC
TCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
Found at i:863176 original size:28 final size:28
Alignment explanation
Indices: 863140--863216 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
863130 ATTTTTCACA
* * *
863140 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
863168 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
*
863196 -TGAGGGGATACTCCAACCCCG
1 AT-CGGGGATACTCCAACCCCG
863217 ACTTTATTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.98
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:863185 original size:212 final size:212
Alignment explanation
Indices: 862818--863223 Score: 620
Period size: 212 Copynumber: 1.9 Consensus size: 212
862808 TTATTAATTC
* * *
862818 TCCACAATCGCGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGCGGATACTCCAACTCCGATTGTATTTTCAAAACACCAATTTTCTATAATCGGGGA
* *
862883 TACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
* * *
862948 CGTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTCCGATTTTATC
131 CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATC
863013 GCTAAAACACTAATTTT
196 GCTAAAACACTAATTTT
* * * *
863030 TCCACAATCGGGGATACTCCAA-TCCTGGTTGTATTTTCAAAACGCCAATTTTCCTTTAATCGGG
1 TCCACAATCGCGGATACTCCAACTCC-GATTGTATTTTCAAAACACCAATTTT-CTATAATCGGG
*
863094 GATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
* * *
863157 CTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCTGAGGGGATACTCCAACCCCGACTTT
129 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTT
863222 AT
193 AT
863224 TCCCAAAATA
Statistics
Matches: 175, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
211 31 0.18
212 109 0.62
213 35 0.20
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.31
Consensus pattern (212 bp):
TCCACAATCGCGGATACTCCAACTCCGATTGTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATC
GCTAAAACACTAATTTT
Found at i:863283 original size:107 final size:107
Alignment explanation
Indices: 862878--863290 Score: 310
Period size: 107 Copynumber: 3.9 Consensus size: 107
862868 TTCTATAATC
* * * * *
862878 GGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCC
1 GGGGATACTCCAACCCCGACTTTATTTCC-AAAAATACCAATTTC-TCACAATCGAGGATACTCC
* * * *
862943 AACCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGA
64 AACCCCGTTATTTATCGGGGATACTCCAACCCCGTTACTTCTGA
* * * * * * *
862987 GGGGATACTCCAACTCCGA-TTT-TATCGCTAAAACACTAATTTTTCCACAATCGGGGATACTCC
1 GGGGATACTCCAACCCCGACTTTATTTC-CAAAAATACCAATTTCT-CACAATCGAGGATACTCC
** * * * ** * *
863050 AATCCTGGTTGTATTT-TC---AAAACGCCAA---TTTTCCTT-TAA
64 AA-CCCCG-T-TATTTATCGGGGATACTCCAACCCCGTTACTTCTGA
* * *
863089 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACTCC
1 --GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCC
*
863154 AACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCTGA
64 AACCCCGTTATTT-ATCGGGGATACTCCAACCCCGTTACTTCTGA
* *** * * *
863199 GGGGATACTCCAACCCCGACTTTA-TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
863263 CCCCGTTATTT-TCGAAGGGATACTCCAA
66 CCCCGTTATTTATCG--GGGATACTCCAA
863291 TCCTGATTTT
Statistics
Matches: 242, Mismatches: 42, Indels: 42
0.74 0.13 0.13
Matches are distributed among these distances:
101 5 0.02
102 2 0.01
103 10 0.04
104 38 0.16
105 20 0.08
106 18 0.07
107 89 0.37
108 29 0.12
109 26 0.11
110 5 0.02
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
CCCCGTTATTTATCGGGGATACTCCAACCCCGTTACTTCTGA
Found at i:866460 original size:51 final size:52
Alignment explanation
Indices: 866360--866471 Score: 129
Period size: 51 Copynumber: 2.2 Consensus size: 52
866350 ACGGGGCTAG
* * *
866360 AGTATCCCCGATTATGGAAAAACGGTGTTCTAAAAAATAAAATCGGGGTTAA
1 AGTATCCCCGATTATGGAAAAACGATGTTCTAAAAAATAAAACCAGGGTTAA
* * * **
866412 AGTATCCCCGATTAT-GAAAAATTGATGTT-TTAGAAATAAAACCAGGGTTGG
1 AGTATCCCCGATTATGGAAAAA-CGATGTTCTAAAAAATAAAACCAGGGTTAA
866463 AGTATCCCC
1 AGTATCCCC
866472 TCGGAAATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
51 31 0.61
52 20 0.39
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.27
Consensus pattern (52 bp):
AGTATCCCCGATTATGGAAAAACGATGTTCTAAAAAATAAAACCAGGGTTAA
Found at i:866539 original size:79 final size:79
Alignment explanation
Indices: 866403--866785 Score: 604
Period size: 79 Copynumber: 4.8 Consensus size: 79
866393 AAAATAAAAT
** *
866403 CGGGGTTAAAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCAGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
866468 CCCCTCGGAAATAA
66 CCCCTCGGAAATAA
* * *
866482 CGGGGTTGGAGTATCCCCAATTATGAAAAATTGGTGTTTTAGAAATAAAATCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
866547 CCCCTCGGAAATAA
66 CCCCTCGGAAATAA
* * * * * *
866561 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTAATATTTTAGAAATAAAACTGGGGTTTGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
866626 CCCCTCGAAAATAA
66 CCCCTCGGAAATAA
* * * *
866640 CGGGGTTGGAGTATCCCCAATTATGAAAAATTGATGTTTTAGAGATAAAACCAGGATTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
866705 CCCCTCGGAAATAA
66 CCCCTCGGAAATAA
*
866719 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
866784 CC
66 CC
866786 TCGATTAAAG
Statistics
Matches: 272, Mismatches: 32, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
79 272 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
CCCCTCGGAAATAA
Found at i:866785 original size:51 final size:51
Alignment explanation
Indices: 866719--866993 Score: 268
Period size: 51 Copynumber: 5.4 Consensus size: 51
866709 TCGGAAATAA
* *
866719 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTAGAAATAAAAC
* * *
866770 CGGGGTTGGAGTATCCTCGATTAA-AGGAAATTGGTGTTTT-GAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTAAGA-AAAATTGATGTTTTAG-AAATAAAAC
* * * * *
866821 CGGGGTTGGAGTATCCCCGATTAAAGGAAATTTGGTATTTTGAAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATT-AAGAAAAATTGATGTTTT-AGAAATAAAAC
* * * * * * *
866874 AGGGTTTAGAGTATCCCCGATTATGGAAAGTT-AGTGTTTTAGAAATGAAAC
1 CGGGGTTGGAGTATCCCCGATTAAGAAAAATTGA-TGTTTTAGAAATAAAAC
* * ** * * *
866925 CGGGGTTGGAGTATCCCCCATTAAGAGAAATCAATATTTTGGAAATAAAGC
1 CGGGGTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTAGAAATAAAAC
866976 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
866994 TCGGAGATAA
Statistics
Matches: 183, Mismatches: 33, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
50 2 0.01
51 126 0.69
52 27 0.15
53 28 0.15
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTAGAAATAAAAC
Found at i:866912 original size:104 final size:103
Alignment explanation
Indices: 866719--866993 Score: 290
Period size: 104 Copynumber: 2.7 Consensus size: 103
866709 TCGGAAATAA
* * * *
866719 CGGGGTTGGAGTATCCCCGATT-ATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTAAAGAAAAATTGATATTTTAAAAATAAAATCGGGGTTAGAGTA
* *
866783 TCCTCGATTAAAGGAAATTGGTGTTTT-GAAAATAAAAC
66 TCCCCGATTAAAGGAAATTAGTGTTTTAG-AAATAAAAC
* * * *
866821 CGGGGTTGGAGTATCCCCGATTAAAGGAAATTTGGTATTTTGAAAAATAAAA-CAGGGTTTAGAG
1 CGGGGTTGGAGTATCCCCGATTAAAGAAAAATTGATATTTT-AAAAATAAAATC-GGGGTTAGAG
* *
866885 TATCCCCGATT-ATGGAAAGTTAGTGTTTTAGAAATGAAAC
64 TATCCCCGATTAAAGGAAA-TTAGTGTTTTAGAAATAAAAC
* * ** ** ** *
866925 CGGGGTTGGAGTATCCCCCATT-AAGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTAAAGAAAAATTGATATTTTAAAAATAAAATCGGGGTTAGAGTA
866989 TCCCC
66 TCCCC
866994 TCGGAGATAA
Statistics
Matches: 143, Mismatches: 24, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
102 44 0.31
103 33 0.23
104 65 0.45
105 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (103 bp):
CGGGGTTGGAGTATCCCCGATTAAAGAAAAATTGATATTTTAAAAATAAAATCGGGGTTAGAGTA
TCCCCGATTAAAGGAAATTAGTGTTTTAGAAATAAAAC
Found at i:867071 original size:129 final size:130
Alignment explanation
Indices: 866882--867122 Score: 308
Period size: 129 Copynumber: 1.9 Consensus size: 130
866872 ACAGGGTTTA
* * *
866882 GAGTATCCCCGATTATGGAAAGTTAGTGTTTTAGAAATGAAACCGGGGTTGGAGTATCCCCCATT
1 GAGTATCCCCGATTATGGAAAATTAGTGTTTTAGAAATAAAACCGGAGTTGGAGTATCCCCCATT
* * *
866947 -AAGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCCCCTCGGAGATAACGAGGTT
66 AAAG-GAAATCAATATTTTGAAAATAAAACCGAGGTTGGAGTATCCCCTCGGAGATAACGAGGTT
867011 G
130 G
* * * * *
867012 GAGTATCCTCGA-T-TGGAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGAT
1 GAGTATCCCCGATTATGGAAAATTAGTG-TTTTAGAAATAAAACCGGAGTTGGAGTATCCCCCAT
*** *
867075 TAAAGGAAATTGGTGTTTTGAAAATAAAACCGAGGTTGGAGTATCCCC
65 TAAAGGAAATCAATATTTTGAAAATAAAACCGAGGTTGGAGTATCCCC
867123 GATTATGAGC
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
128 11 0.12
129 69 0.73
130 14 0.15
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (130 bp):
GAGTATCCCCGATTATGGAAAATTAGTGTTTTAGAAATAAAACCGGAGTTGGAGTATCCCCCATT
AAAGGAAATCAATATTTTGAAAATAAAACCGAGGTTGGAGTATCCCCTCGGAGATAACGAGGTTG
Found at i:867137 original size:51 final size:51
Alignment explanation
Indices: 867004--867137 Score: 166
Period size: 51 Copynumber: 2.6 Consensus size: 51
866994 TCGGAGATAA
* * * *
867004 CGAGGTTGGAGTATCCTCGATTGGA-AAATTGGTGTTTTTGGAAATAAAAT
1 CGAGGTTGGAGTATCCCCGATTAGAGAAATTGGTGTTTTTGAAAATAAAAC
*
867054 CG-GAGTTGGAGTATCCCCGATTAAAGGAAATTGGTG-TTTTGAAAATAAAAC
1 CGAG-GTTGGAGTATCCCCGATTAGA-GAAATTGGTGTTTTTGAAAATAAAAC
*
867105 CGAGGTTGGAGTATCCCCGATTATGAGCAATTG
1 CGAGGTTGGAGTATCCCCGATTA-GAGAAATTG
867138 AAAAGCTTAA
Statistics
Matches: 72, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
49 1 0.01
50 20 0.28
51 40 0.56
52 11 0.15
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.30
Consensus pattern (51 bp):
CGAGGTTGGAGTATCCCCGATTAGAGAAATTGGTGTTTTTGAAAATAAAAC
Found at i:868061 original size:18 final size:18
Alignment explanation
Indices: 868037--868107 Score: 72
Period size: 18 Copynumber: 3.9 Consensus size: 18
868027 AATTGCTACC
*
868037 TGCTGGAGTTGCTGCTCT
1 TGCTGGAGCTGCTGCTCT
* *
868055 CGCTGGAGCTGCTGTTGCT
1 TGCTGGAGCTGCTGCT-CT
*
868074 TGCTGGAGCTGCAG-TCGT
1 TGCTGGAGCTGCTGCTC-T
*
868092 TGCTGGAGTTGCTGCT
1 TGCTGGAGCTGCTGCT
868108 GTTGTTGCGT
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
17 1 0.02
18 27 0.63
19 15 0.35
ACGTcount: A:0.07, C:0.23, G:0.37, T:0.34
Consensus pattern (18 bp):
TGCTGGAGCTGCTGCTCT
Found at i:868121 original size:43 final size:43
Alignment explanation
Indices: 868062--868163 Score: 177
Period size: 43 Copynumber: 2.4 Consensus size: 43
868052 TCTCGCTGGA
* *
868062 GCTGCTGTTGCTTGCTGGAGCTGCAGTCGTTGCTGGAGTTGCT
1 GCTGCTGTTGCGTGCTGGAGCTACAGTCGTTGCTGGAGTTGCT
*
868105 GCTGTTGTTGCGTGCTGGAGCTACAGTCGTTGCTGGAGTTGCT
1 GCTGCTGTTGCGTGCTGGAGCTACAGTCGTTGCTGGAGTTGCT
868148 GCTGCTGTTGCGTGCT
1 GCTGCTGTTGCGTGCT
868164 AGAACTGTTG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.07, C:0.21, G:0.37, T:0.35
Consensus pattern (43 bp):
GCTGCTGTTGCGTGCTGGAGCTACAGTCGTTGCTGGAGTTGCT
Found at i:868183 original size:43 final size:43
Alignment explanation
Indices: 868093--868194 Score: 105
Period size: 43 Copynumber: 2.4 Consensus size: 43
868083 TGCAGTCGTT
* * * * **
868093 GCTGGAGTTGCTGCTGTTGTTGCGTGCTGGAGCTACAGTCGTT
1 GCTGGAGTTGCTGCTGCTGTTGCGTGCTAGAACTACAGCCGCC
***
868136 GCTGGAGTTGCTGCTGCTGTTGCGTGCTAGAACTGTTGCCGCC
1 GCTGGAGTTGCTGCTGCTGTTGCGTGCTAGAACTACAGCCGCC
* *
868179 GCTGGAGCTGGTGCTG
1 GCTGGAGTTGCTGCTG
868195 TTGCTAGAGC
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.09, C:0.22, G:0.38, T:0.31
Consensus pattern (43 bp):
GCTGGAGTTGCTGCTGCTGTTGCGTGCTAGAACTACAGCCGCC
Found at i:868548 original size:50 final size:50
Alignment explanation
Indices: 868494--868646 Score: 270
Period size: 50 Copynumber: 3.1 Consensus size: 50
868484 TCCATTCTCT
*
868494 TGCATGCCTCTGCATGTTTTGTCTCCAATTGCAATTTTTATGCTTTCCCA
1 TGCATGCCTCTGTATGTTTTGTCTCCAATTGCAATTTTTATGCTTTCCCA
* *
868544 TGCATGCCTTTGTATGTTTTGTCTCCAATTGCAATTTTGATGCTTTCCCA
1 TGCATGCCTCTGTATGTTTTGTCTCCAATTGCAATTTTTATGCTTTCCCA
*
868594 TGCATGCCTCTATATGTTTTGTCTCCAATTGCAATTTTTATGCTTTCCCA
1 TGCATGCCTCTGTATGTTTTGTCTCCAATTGCAATTTTTATGCTTTCCCA
868644 TGC
1 TGC
868647 TGCATTTTCT
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 97 1.00
ACGTcount: A:0.16, C:0.24, G:0.14, T:0.45
Consensus pattern (50 bp):
TGCATGCCTCTGTATGTTTTGTCTCCAATTGCAATTTTTATGCTTTCCCA
Found at i:868727 original size:26 final size:26
Alignment explanation
Indices: 868636--868726 Score: 164
Period size: 26 Copynumber: 3.5 Consensus size: 26
868626 AATTTTTATG
868636 CTTTCCCATGCTGCATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
*
868662 CTTTCCCATGCTACATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
*
868688 CTTTCCCATGCTGTATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
868714 CTTTCCCATGCTG
1 CTTTCCCATGCTG
868727 TTTGTGTTTT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 62 1.00
ACGTcount: A:0.12, C:0.31, G:0.08, T:0.49
Consensus pattern (26 bp):
CTTTCCCATGCTGCATTTTCTATTTC
Found at i:868865 original size:6 final size:6
Alignment explanation
Indices: 868831--868857 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
868821 ATTATAATTT
868831 TTTGAA TTTGAA TTTGAA TTTGAA TTT
1 TTTGAA TTTGAA TTTGAA TTTGAA TTT
868858 TTAATTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (6 bp):
TTTGAA
Found at i:869670 original size:117 final size:116
Alignment explanation
Indices: 869479--870085 Score: 679
Period size: 117 Copynumber: 5.2 Consensus size: 116
869469 ATAAAGTGTA
* * * *
869479 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGGGGGCTTTGAAAGGCGTCCTACTCTT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
*
869544 TGAGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
66 TGAGAACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCG
*
869595 TTCTGCTCTTTGAGGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
*
869660 TTGAGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
65 TTGAGAACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCG
869712 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAAGCATCC
1 TCCTGCTCTTTGAGGACTG-AAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGC----G--TCC
* * *
869777 TTCTCTTTGA-AGACT-AAAGGTGCCACCAGCTTGTGTAGGCTTT-AAAAGGAAAAGGCG
59 TGCTCTTTGAGA-ACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA-GAAAAGGCG
** * * * *
869834 TCCTATTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCGACCTGCTCT
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* * ** *
869899 TTGAGGACTAAAAAATTGCCACCAACTTATGTGGGCTTTG-AAAG---A--CG
65 TTGAGAACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCG
* * *
869946 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCT
* ** *
870011 GCTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGG-TTT-----TAAAAGGCG
60 GCTCTTTGAGAACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCG
870063 TCCTGCTCTTTGAGGACT-AAAAG
1 TCCTGCTCTTTGAGGACTGAAAAG
870086 GGTGAAAGGA
Statistics
Matches: 429, Mismatches: 36, Indels: 52
0.83 0.07 0.10
Matches are distributed among these distances:
111 26 0.06
112 19 0.04
114 1 0.00
115 1 0.00
116 39 0.09
117 212 0.49
118 27 0.06
121 5 0.01
122 83 0.19
123 16 0.04
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (116 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
TGAGAACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCG
Found at i:869825 original size:60 final size:61
Alignment explanation
Indices: 869479--870060 Score: 477
Period size: 62 Copynumber: 9.9 Consensus size: 61
869469 ATAAAGTGTA
* * * **
869479 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGGGGGCTTT-----G-AAAGGCG
1 TCCTGCTCTTTGAAGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGAAAAGGCG
* * * *
869534 TCCTACTCTTTG-AGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCG
1 TCCTGCTCTTTGAAG-ACTGAAAAGTGCCACCAACTTGTGTAGGCTTT-AAAAGGAAAAGGCG
* * *
869595 TTCTGCTCTTTGAGGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
1 TCCTGCTCTTTGAAGACT-GAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGAAAAGGCG
* * *
869651 TCCTGCTCTTTG-AGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCG
1 TCCTGCTCTTTGAAG-ACTGAAAAGTGCCACCAACTTGTGTAGGCTTT-AAAAGGAAAAGGCG
* * * * *
869712 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAA-GCA
1 TCCTGCTCTTTGAAGACTG-AAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGG-AAAAGGCG
* * *
869774 TCCTTCTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTAGGCTTTAAAAGGAAAAGGCG
1 TCCTGCTCTTTGAAGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGAAAAGGCG
** * *
869834 TCCTATTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTAGGCTTT------AAAAGGCG
1 TCCTGCTCTTTGAAGACT-GAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGAAAAGGCG
* * * * * * *
869890 ACCTGCTCTTTGAGGACTAAAAAATTGCCACCAACTTATGTGGGCTTT-----G-AAAGACG
1 TCCTGCTCTTTGAAGACT-GAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGAAAAGGCG
* * * * *
869946 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTG
1 TCCTGCTCTTTGAAGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGAAAAGGCG
* * * *
870007 TCCTGCTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGTTTTAAAAGG
1 TCCTGCTCTTTGAAGACT-GAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGG
870061 CGTCCTGCTC
Statistics
Matches: 442, Mismatches: 54, Indels: 55
0.80 0.10 0.10
Matches are distributed among these distances:
54 1 0.00
55 93 0.21
56 92 0.21
57 1 0.00
59 3 0.01
60 50 0.11
61 68 0.15
62 131 0.30
63 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (61 bp):
TCCTGCTCTTTGAAGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGAAAAGGCG
Found at i:870014 original size:295 final size:295
Alignment explanation
Indices: 869527--870062 Score: 808
Period size: 295 Copynumber: 1.8 Consensus size: 295
869517 GGGGGCTTTG
** *
869527 AAAGGCGTCCTACTCTTTGAGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAG
1 AAAGGCGTCCTACTCTTTGAGAACTGAAAAATGCCACCAACTCGTGTAGGCTTT----A-AAAAG
** ** * * *
869592 GCGTTCTGCTCTTTGAGGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGC
61 GCGACCTGCTCTTTGAGGACTAAAAAAGTGCCACCAACTTATGTGGGCTTTGAAAGACGTCCTAC
869657 TCTTTGAGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTCTT
126 TCTTTGAGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTCTT
*
869722 TGAGGACT-GAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAAGCATCCTTCTCTTTG
191 TGAGGACTAGAAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGCGAAAGCATCCTTCTCTTTG
869786 AAGACTAAAGGTGCCACCAGCTTGTGTAGGCTTTAAAAGGA
255 AAGACTAAAGGTGCCACCAGCTTGTGTAGGCTTTAAAAGGA
* * *
869827 AAAGGCGTCCTATTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTAGGCTTT-AAAAGGCGA
1 AAAGGCGTCCTACTCTTTGAGAACT-GAAAAATGCCACCAACTCGTGTAGGCTTTAAAAAGGCGA
*
869891 CCTGCTCTTTGAGGACTAAAAAATTGCCACCAACTTATGTGGGCTTTGAAAGACGTCCTACTCTT
65 CCTGCTCTTTGAGGACTAAAAAAGTGCCACCAACTTATGTGGGCTTTGAAAGACGTCCTACTCTT
* * *
869956 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGTGTCCTGCTCTTTGA
130 TGAGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCGTCCTGCTCTTTGA
*
870020 GGACTAGAAAAATGCCACCAACTTGTGTGGGTTTTAAAAGGCG
194 GGACTAGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCG
870063 TCCTGCTCTT
Statistics
Matches: 214, Mismatches: 19, Indels: 11
0.88 0.08 0.05
Matches are distributed among these distances:
294 4 0.02
295 156 0.73
296 6 0.03
300 23 0.11
301 25 0.12
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (295 bp):
AAAGGCGTCCTACTCTTTGAGAACTGAAAAATGCCACCAACTCGTGTAGGCTTTAAAAAGGCGAC
CTGCTCTTTGAGGACTAAAAAAGTGCCACCAACTTATGTGGGCTTTGAAAGACGTCCTACTCTTT
GAGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTCTTTGAGG
ACTAGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGAAAGCATCCTTCTCTTTGAAGACT
AAAGGTGCCACCAGCTTGTGTAGGCTTTAAAAGGA
Found at i:883623 original size:51 final size:51
Alignment explanation
Indices: 883488--883634 Score: 145
Period size: 51 Copynumber: 2.8 Consensus size: 51
883478 CCCTGACGAA
* *
883488 AAAAATTAGTATTTTAGAGATAACAACGGGGCTAGAGTATCCCCGATTATGG
1 AAAAATTAGTATTTTAGAAATAA-AACGGGGTTAGAGTATCCCCGATTATGG
** * * * * *
883540 AAAAA-CGGTGTTCTAAAAAATAAAATCAGGGTTAGAGTATCCCCGATTGT-G
1 AAAAATTAGTATT-TTAGAAATAAAA-CGGGGTTAGAGTATCCCCGATTATGG
* *
883591 AAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
1 AAAAATTAGTATTTTAGAAATAAAA-CGGGGTTAGAGTATCCCC
883635 TCGAAAATAA
Statistics
Matches: 74, Mismatches: 18, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
51 38 0.51
52 36 0.49
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.27
Consensus pattern (51 bp):
AAAAATTAGTATTTTAGAAATAAAACGGGGTTAGAGTATCCCCGATTATGG
Found at i:883658 original size:79 final size:79
Alignment explanation
Indices: 883568--883950 Score: 685
Period size: 79 Copynumber: 4.8 Consensus size: 79
883558 AATAAAATCA
* * * *
883568 GGGTTAGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
883633 CCTCGAAAATAACG
66 CCTCGAAAATAACG
*
883647 GGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
*
883712 CCTCGGAAATAACG
66 CCTCGAAAATAACG
*
883726 GGGTTGGAGTATCCCCGATTATGAAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
883791 CCTCGAAAATAACG
66 CCTCGAAAATAACG
*
883805 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
883870 CCTCGAAAATAACG
66 CCTCGAAAATAACG
*
883884 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
883949 CC
66 CC
883951 GATTAAAGGA
Statistics
Matches: 291, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 291 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
CCTCGAAAATAACG
Found at i:884058 original size:104 final size:102
Alignment explanation
Indices: 883882--884118 Score: 271
Period size: 104 Copynumber: 2.3 Consensus size: 102
883872 TCGAAAATAA
** * * * * *
883882 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCAAATTAAGAAAAATTGATGTTTTAAAAATAAAATCGAGGTTAGACTAT
*
883947 CCCCGATTAAAGGAAA-TTGGTGTTTT-GAAAATAAAAC
66 CCCCGATT-AAGGAAAGTTAGTGTTTTAG-AAATAAAAC
* * * *
883984 CGGGGTTGGAGTATCCCAAATTAAAGGAAATTTGGTGTTTTGAAAAATAAAATCGAGTTTAGACT
1 CGGGGTTGGAGTATCCCAAATT-AAGAAAAATTGATGTTTT-AAAAATAAAATCGAGGTTAGACT
* *
884049 ATCCCCGATTATGGAAAGTTAGTGTTTTAGAAATGAAAC
64 ATCCCCGATTAAGGAAAGTTAGTGTTTTAGAAATAAAAC
** *
884088 CGGGGTTGGAGTATCCCCCATTAAGAGAAAT
1 CGGGGTTGGAGTATCCCAAATTAAGAAAAAT
884119 CAATATTTTG
Statistics
Matches: 112, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
102 20 0.18
103 26 0.23
104 65 0.58
105 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (102 bp):
CGGGGTTGGAGTATCCCAAATTAAGAAAAATTGATGTTTTAAAAATAAAATCGAGGTTAGACTAT
CCCCGATTAAGGAAAGTTAGTGTTTTAGAAATAAAAC
Found at i:884065 original size:52 final size:52
Alignment explanation
Indices: 883882--884156 Score: 260
Period size: 51 Copynumber: 5.3 Consensus size: 52
883872 TCGAAAATAA
* *
883882 CGGGGTTGGAGTATCCCCGATTATGAA--AAATTGATGTTTT-AGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTA--AAGGAAATTGGTGTTTTGAAAAATAAAAT
*
883933 CGGGGTTGGAGTATCCCCGATTAAAGGAAATTGGTGTTTTG-AAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTAAAGGAAATTGGTGTTTTGAAAAATAAAAT
**
883984 CGGGGTTGGAGTATCCCAAATTAAAGGAAATTTGGTGTTTTGAAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTAAAGGAAA-TTGGTGTTTTGAAAAATAAAAT
* * * * * * * * *
884037 CGAGTTTAGACTATCCCCGATT-ATGGAAAGTTAGTGTTTT-AGAAATGAAAC
1 CGGGGTTGGAGTATCCCCGATTAAAGGAAA-TTGGTGTTTTGAAAAATAAAAT
* *** * * *
884088 CGGGGTTGGAGTATCCCCCATT-AAGAGAAATCAATATTTTG-GAAATAAAGT
1 CGGGGTTGGAGTATCCCCGATTAAAG-GAAATTGGTGTTTTGAAAAATAAAAT
884139 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
884157 TCAGAGATAA
Statistics
Matches: 187, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
49 2 0.01
51 130 0.70
52 30 0.16
53 25 0.13
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.29
Consensus pattern (52 bp):
CGGGGTTGGAGTATCCCCGATTAAAGGAAATTGGTGTTTTGAAAAATAAAAT
Found at i:884300 original size:51 final size:52
Alignment explanation
Indices: 884192--884290 Score: 146
Period size: 51 Copynumber: 1.9 Consensus size: 52
884182 CTGGATTGGA
* * *
884192 AAATTGGTGTTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATTAAAGG
1 AAATTGGTGTTTTTGAAAATAAAACCAGAGTTGGAGTATCCCCAATTAAAGG
* *
884244 AAATTGGTG-TTTTGAAAATAAAACCGGGGTTGGAGTATCCCCAATTA
1 AAATTGGTGTTTTTGAAAATAAAACCAGAGTTGGAGTATCCCCAATTA
884291 TGAGCAATTG
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
51 33 0.79
52 9 0.21
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.30
Consensus pattern (52 bp):
AAATTGGTGTTTTTGAAAATAAAACCAGAGTTGGAGTATCCCCAATTAAAGG
Found at i:885301 original size:43 final size:43
Alignment explanation
Indices: 885247--885345 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 43
885237 CGCTGGAGCT
* *
885247 GCTGTTACGTGCTGGAGCTACAATCGCTGCTGGAGTTGCTGCC
1 GCTGTTGCGTGCTGGAGCTACAATCACTGCTGGAGTTGCTGCC
* * * * *
885290 GTTGTTGCGTGCTGGAGCTGCAGTCATTGCTGGAGTTGCTGCT
1 GCTGTTGCGTGCTGGAGCTACAATCACTGCTGGAGTTGCTGCC
885333 GCTGTTGCGTGCT
1 GCTGTTGCGTGCT
885346 AGAACTGTTG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.10, C:0.22, G:0.35, T:0.32
Consensus pattern (43 bp):
GCTGTTGCGTGCTGGAGCTACAATCACTGCTGGAGTTGCTGCC
Found at i:885365 original size:43 final size:43
Alignment explanation
Indices: 885275--885376 Score: 105
Period size: 43 Copynumber: 2.4 Consensus size: 43
885265 TACAATCGCT
* * * * * **
885275 GCTGGAGTTGCTGCCGTTGTTGCGTGCTGGAGCTGCAGTCATT
1 GCTGGAGTTGCTGCTGCTGTTGCGTGCTAGAACTGCAGCCACC
**
885318 GCTGGAGTTGCTGCTGCTGTTGCGTGCTAGAACTGTTGCCACC
1 GCTGGAGTTGCTGCTGCTGTTGCGTGCTAGAACTGCAGCCACC
* *
885361 GCTGGAGCTGCAGCTG
1 GCTGGAGTTGCTGCTG
885377 TTGCTGGAGC
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.11, C:0.24, G:0.36, T:0.29
Consensus pattern (43 bp):
GCTGGAGTTGCTGCTGCTGTTGCGTGCTAGAACTGCAGCCACC
Found at i:885730 original size:50 final size:50
Alignment explanation
Indices: 885676--885828 Score: 297
Period size: 50 Copynumber: 3.1 Consensus size: 50
885666 TCCATTCTCT
*
885676 TGCATGCCTCTGCATGTTTTGTCTCCAATTGCAATTTTTATGCTTTCCCA
1 TGCATGCCTCTGTATGTTTTGTCTCCAATTGCAATTTTTATGCTTTCCCA
885726 TGCATGCCTCTGTATGTTTTGTCTCCAATTGCAATTTTTATGCTTTCCCA
1 TGCATGCCTCTGTATGTTTTGTCTCCAATTGCAATTTTTATGCTTTCCCA
885776 TGCATGCCTCTGTATGTTTTGTCTCCAATTGCAATTTTTATGCTTTCCCA
1 TGCATGCCTCTGTATGTTTTGTCTCCAATTGCAATTTTTATGCTTTCCCA
885826 TGC
1 TGC
885829 TGCATTTTCT
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 102 1.00
ACGTcount: A:0.16, C:0.25, G:0.14, T:0.45
Consensus pattern (50 bp):
TGCATGCCTCTGTATGTTTTGTCTCCAATTGCAATTTTTATGCTTTCCCA
Found at i:885909 original size:26 final size:26
Alignment explanation
Indices: 885818--885908 Score: 164
Period size: 26 Copynumber: 3.5 Consensus size: 26
885808 AATTTTTATG
885818 CTTTCCCATGCTGCATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
*
885844 CTTTCCCATGCTACATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
*
885870 CTTTCCCATGCTGTATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
885896 CTTTCCCATGCTG
1 CTTTCCCATGCTG
885909 TTCGTGTTTT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 62 1.00
ACGTcount: A:0.12, C:0.31, G:0.08, T:0.49
Consensus pattern (26 bp):
CTTTCCCATGCTGCATTTTCTATTTC
Found at i:886047 original size:12 final size:12
Alignment explanation
Indices: 886013--886054 Score: 57
Period size: 13 Copynumber: 3.3 Consensus size: 12
886003 TATTATAATT
*
886013 TTTTGAATTTCAA
1 TTTT-AATTTTAA
886026 TTTTAATTTTAA
1 TTTTAATTTTAA
886038 TTTTAATTTTTAA
1 TTTTAA-TTTTAA
886051 TTTT
1 TTTT
886055 TACTTATTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 13 0.48
13 14 0.52
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (12 bp):
TTTTAATTTTAA
Found at i:886056 original size:7 final size:6
Alignment explanation
Indices: 886013--886054 Score: 57
Period size: 6 Copynumber: 6.7 Consensus size: 6
886003 TATTATAATT
*
886013 TTTTGAA TTTCAA TTTTAA TTTTAA TTTTAA TTTTTAA TTTT
1 TTTT-AA TTTTAA TTTTAA TTTTAA TTTTAA -TTTTAA TTTT
886055 TACTTATTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
6 23 0.72
7 9 0.28
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (6 bp):
TTTTAA
Found at i:894495 original size:13 final size:13
Alignment explanation
Indices: 894477--894504 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
894467 GTTGAATATC
894477 TAAATCTATTAAA
1 TAAATCTATTAAA
894490 TAAATCTATTAAA
1 TAAATCTATTAAA
894503 TA
1 TA
894505 TTCAAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (13 bp):
TAAATCTATTAAA
Found at i:895332 original size:18 final size:19
Alignment explanation
Indices: 895280--895332 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
895270 TGTATTTTTG
*
895280 TGTTTGTATTATATTTTTTA
1 TGTTTGTATTAT-TTTTATA
*
895300 T-TTTATATATATTTTTATA
1 TGTTTGTAT-TATTTTTATA
895319 TGTTTGTATT-TTTT
1 TGTTTGTATTATTTT
895333 AATTATATTC
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
18 4 0.14
19 14 0.50
20 10 0.36
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (19 bp):
TGTTTGTATTATTTTTATA
Found at i:896723 original size:15 final size:15
Alignment explanation
Indices: 896705--896733 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
896695 ATTTTTTATA
896705 TTTTT-TAATTTAAT
1 TTTTTGTAATTTAAT
896719 TTTTTGTAATTTAAT
1 TTTTTGTAATTTAAT
896734 AATATTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTTTGTAATTTAAT
Found at i:896837 original size:21 final size:22
Alignment explanation
Indices: 896801--896841 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
896791 CTATAATATT
896801 ATATATTTATTTTTTATATAGC
1 ATATATTTATTTTTTATATAGC
896823 ATATATTTA-TTTTTATATA
1 ATATATTTATTTTTTATATA
896842 ATAAAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
ATATATTTATTTTTTATATAGC
Found at i:896875 original size:28 final size:26
Alignment explanation
Indices: 896839--896904 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 26
896829 TTATTTTTAT
896839 ATAATAAAAATTATATAATATATATAAAA
1 ATAA-AAAAATTATAT-ATAT-TATAAAA
* * *
896868 ATAAAAAACTAATATATATTATATAA
1 ATAAAAAAATTATATATATTATAAAA
*
896894 TTAAAAAAATT
1 ATAAAAAAATT
896905 GAGTCAAGAA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
26 14 0.45
27 4 0.13
28 9 0.29
29 4 0.13
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (26 bp):
ATAAAAAAATTATATATATTATAAAA
Found at i:897041 original size:19 final size:19
Alignment explanation
Indices: 897000--897042 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
896990 TTCTACACTC
* *
897000 TTTAAATATTAAATCAATC
1 TTTAAATATTAAATAAATA
897019 TTTAAAT-TTAAATAAATAA
1 TTTAAATATTAAATAAAT-A
897038 TTTAA
1 TTTAA
897043 TGTATAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (19 bp):
TTTAAATATTAAATAAATA
Found at i:898789 original size:12 final size:12
Alignment explanation
Indices: 898772--898810 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
898762 TGAAGCTGAG
898772 AAGAAAGATAAA
1 AAGAAAGATAAA
* *
898784 AAGAAAAAGAAA
1 AAGAAAGATAAA
*
898796 AAGAACGATAAA
1 AAGAAAGATAAA
898808 AAG
1 AAG
898811 GATGACGATG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.74, C:0.03, G:0.18, T:0.05
Consensus pattern (12 bp):
AAGAAAGATAAA
Found at i:908663 original size:16 final size:17
Alignment explanation
Indices: 908642--908675 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
908632 AGCTTCTTCA
908642 TTTTC-TTCTCTGGTTC
1 TTTTCTTTCTCTGGTTC
*
908658 TTTTCTTTCTCTGTTTC
1 TTTTCTTTCTCTGGTTC
908675 T
1 T
908676 GCCACCCTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.00, C:0.24, G:0.09, T:0.68
Consensus pattern (17 bp):
TTTTCTTTCTCTGGTTC
Found at i:910630 original size:16 final size:19
Alignment explanation
Indices: 910609--910651 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 19
910599 GTAAAAATAA
910609 AAAAATT-A-TTTT-ATTT
1 AAAAATTAATTTTTAATTT
910625 AAAAATTAATTTTTAATTT
1 AAAAATTAATTTTTAATTT
910644 ATAAAATT
1 A-AAAATT
910652 TTTATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 7 0.30
17 1 0.04
18 4 0.17
19 5 0.22
20 6 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AAAAATTAATTTTTAATTT
Found at i:918187 original size:112 final size:112
Alignment explanation
Indices: 918012--918235 Score: 412
Period size: 112 Copynumber: 2.0 Consensus size: 112
918002 TCTACACTAT
*
918012 AATATTAATCATATCACCACAATACACATCACTTTATAGCACAAAATATTAATATATTTATATAA
1 AATATTAATCATATCACCACAACACACATCACTTTATAGCACAAAATATTAATATATTTATATAA
918077 GATTTAAAGCTTGGCAAGCAAAGCACGTAACTTGTCTATCACTTTGA
66 GATTTAAAGCTTGGCAAGCAAAGCACGTAACTTGTCTATCACTTTGA
* *
918124 AATATTAATCATATCATCACAACACACATCACTTTATAGCATAAAATATTAATATATTTATATAA
1 AATATTAATCATATCACCACAACACACATCACTTTATAGCACAAAATATTAATATATTTATATAA
*
918189 GATTTAAAGCTTGGCAAGCAAAGCACGTAACTTGTCTATCATTTTGA
66 GATTTAAAGCTTGGCAAGCAAAGCACGTAACTTGTCTATCACTTTGA
918236 CCTTGAACTG
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
112 108 1.00
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (112 bp):
AATATTAATCATATCACCACAACACACATCACTTTATAGCACAAAATATTAATATATTTATATAA
GATTTAAAGCTTGGCAAGCAAAGCACGTAACTTGTCTATCACTTTGA
Found at i:921183 original size:2 final size:2
Alignment explanation
Indices: 921178--921214 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
921168 TTGTGTGTGC
921178 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
921215 AGATATACAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:923757 original size:17 final size:18
Alignment explanation
Indices: 923724--923757 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
923714 TTTCAGCTTG
*
923724 TTGCTTTGCTGTTCCACA
1 TTGCTTTGCTCTTCCACA
923742 TTGCTTTG-TCTTCCAC
1 TTGCTTTGCTCTTCCAC
923758 TTTCTTCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.09, C:0.29, G:0.15, T:0.47
Consensus pattern (18 bp):
TTGCTTTGCTCTTCCACA
Found at i:927067 original size:99 final size:100
Alignment explanation
Indices: 926905--927085 Score: 292
Period size: 99 Copynumber: 1.8 Consensus size: 100
926895 AGTATTGATT
* * *
926905 ATTATGTTTTTAATTAATTAATGATATTTTTATTAAAATTAAAATATTGAATAATTTTATTATTA
1 ATTATGTTCTTAATTAATTAATGATATTTTTATTAAAATTAAAACATGGAATAATTTTATTATTA
* *
926970 ATCTTGAATTCTTTATTAACGTAGTAGTATGGACC
66 AACCTGAATTCTTTATTAACGTAGTAGTATGGACC
* *
927005 ATTATGTTCTTAATTAATTAATGAT-TTTTTATTAAGATTAAAACATGGAATAATTTTCTTATTA
1 ATTATGTTCTTAATTAATTAATGATATTTTTATTAAAATTAAAACATGGAATAATTTTATTATTA
927069 AACCTGAATTCTTTATT
66 AACCTGAATTCTTTATT
927086 CATGTAAATA
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
99 50 0.68
100 24 0.32
ACGTcount: A:0.36, C:0.06, G:0.08, T:0.49
Consensus pattern (100 bp):
ATTATGTTCTTAATTAATTAATGATATTTTTATTAAAATTAAAACATGGAATAATTTTATTATTA
AACCTGAATTCTTTATTAACGTAGTAGTATGGACC
Found at i:927518 original size:16 final size:16
Alignment explanation
Indices: 927481--927511 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
927471 AAACTTGAAA
927481 CCGAACTCGAATAAGT
1 CCGAACTCGAATAAGT
927497 CCGAACTCGAATAAG
1 CCGAACTCGAATAAG
927512 CTCGAACCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.26, G:0.19, T:0.16
Consensus pattern (16 bp):
CCGAACTCGAATAAGT
Found at i:927562 original size:16 final size:16
Alignment explanation
Indices: 927541--927572 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
927531 AAATCCGAAT
*
927541 GAGCCCGAACCTAAAC
1 GAGCCCGAACCCAAAC
927557 GAGCCCGAACCCAAAC
1 GAGCCCGAACCCAAAC
927573 CTATCCAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.41, G:0.19, T:0.03
Consensus pattern (16 bp):
GAGCCCGAACCCAAAC
Found at i:928201 original size:28 final size:24
Alignment explanation
Indices: 928142--928187 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
928132 TAAATCTTAA
928142 ATCTTATAGTAGAGTTTTTTTTAT
1 ATCTTATAGTAGAGTTTTTTTTAT
*
928166 ATCTTATAGTGGAGTTTTTTTT
1 ATCTTATAGTAGAGTTTTTTTT
928188 TATTATGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.22, C:0.04, G:0.15, T:0.59
Consensus pattern (24 bp):
ATCTTATAGTAGAGTTTTTTTTAT
Found at i:935826 original size:17 final size:18
Alignment explanation
Indices: 935804--935841 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
935794 ATACTATTTT
935804 TACTTATTT-TTATATAA
1 TACTTATTTATTATATAA
*
935821 TACTTATTTATTATATTA
1 TACTTATTTATTATATAA
935839 TAC
1 TAC
935842 AAATCTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (18 bp):
TACTTATTTATTATATAA
Found at i:936223 original size:26 final size:25
Alignment explanation
Indices: 936174--936237 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 25
936164 AAGAAAAAGG
** *
936174 AAAATGAAAAGGAAAAAAATAAATGA
1 AAAATGAAAAATAAAAAAAGAAAT-A
*
936200 AAAATGAAAAATAAAAATAGAAATA
1 AAAATGAAAAATAAAAAAAGAAATA
* *
936225 GAAATAAAAAATA
1 AAAATGAAAAATA
936238 TTTAAATTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 12 0.38
26 20 0.62
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (25 bp):
AAAATGAAAAATAAAAAAAGAAATA
Found at i:936613 original size:21 final size:21
Alignment explanation
Indices: 936587--936654 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
936577 CAATTTTTTG
936587 AAAAACTACCTAACTATTCTT
1 AAAAACTACCTAACTATTCTT
* ** *
936608 AAAAACTATCTATTTATTTTT
1 AAAAACTACCTAACTATTCTT
*
936629 AAAAACTACC-CACTCATTCTT
1 AAAAACTACCTAACT-ATTCTT
936650 AAAAA
1 AAAAA
936655 AAAAAACTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
20 1 0.03
21 36 0.97
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.35
Consensus pattern (21 bp):
AAAAACTACCTAACTATTCTT
Found at i:941350 original size:151 final size:151
Alignment explanation
Indices: 941056--941342 Score: 353
Period size: 151 Copynumber: 1.9 Consensus size: 151
941046 GCATAAAAAG
* * *
941056 ACCTAGTGACTACTTAAAATTTGATTTTAATAAAATTACAAAAATGCCTTTAAGATATATCTTTG
1 ACCTAGTGACTACTTAAAACTCGATTTTAATAAAATTACAAAAATGCCATTAAGATATATCTTTG
* * * * * *
941121 ACATGAAAGTTTCCTAATAATCCTAAAAGATACAAAAATAATAAGTAAAAGGACAAACTTATCTT
66 ACATAAAAGTATCCTAATAACCCTAAAAGACACAAAAATAATAAGTAAAAAGACAAACTTATCCT
941186 AAATGCAAACATTTTAAGGCT
131 AAATGCAAACATTTTAAGGCT
* * * * *
941207 ACCTATTGACTACTTAAGACTCGATTTTAATAAAATT-CTGAAAATGCCATTAGGATATGTCTTT
1 ACCTAGTGACTACTTAAAACTCGATTTTAATAAAATTAC-AAAAATGCCATTAAGATATATCTTT
* * ** * * *
941271 GATATAAAAGTATCTTTTTAACCCTAAAAGACACGAACATGATAAGTAAAAAGACAAA-TCTATC
65 GACATAAAAGTATCCTAATAACCCTAAAAGACACAAAAATAATAAGTAAAAAGACAAACT-TATC
941335 CTAAATGC
129 CTAAATGC
941343 GCACATTTAA
Statistics
Matches: 113, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
150 2 0.02
151 111 0.98
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.31
Consensus pattern (151 bp):
ACCTAGTGACTACTTAAAACTCGATTTTAATAAAATTACAAAAATGCCATTAAGATATATCTTTG
ACATAAAAGTATCCTAATAACCCTAAAAGACACAAAAATAATAAGTAAAAAGACAAACTTATCCT
AAATGCAAACATTTTAAGGCT
Found at i:943422 original size:11 final size:11
Alignment explanation
Indices: 943388--943531 Score: 65
Period size: 11 Copynumber: 13.5 Consensus size: 11
943378 AAAACACAAA
*
943388 ATAATATAAAA
1 ATAATATAAAT
* *
943399 ATATTATAGAT
1 ATAATATAAAT
943410 ATAATAT-AA-
1 ATAATATAAAT
943419 AT-ATATAAAT
1 ATAATATAAAT
943429 AT-AT-TAAAT
1 ATAATATAAAT
*
943438 -TCATATAACAT
1 ATAATATAA-AT
* *
943449 A-AATTATCAAC
1 ATAA-TATAAAT
*
943460 ATATTA-AAATT
1 ATAATATAAA-T
943471 ATAATA-AATAT
1 ATAATATAA-AT
**
943482 ATAATAT-TTT
1 ATAATATAAAT
* *
943492 TTAATATAATT
1 ATAATATAAAT
*
943503 ATAATAATAAAA
1 ATAAT-ATAAAT
943515 ATAATATAAAT
1 ATAATATAAAT
943526 ATAATA
1 ATAATA
943532 CTTAAAGTAC
Statistics
Matches: 100, Mismatches: 20, Indels: 26
0.68 0.14 0.18
Matches are distributed among these distances:
8 5 0.05
9 11 0.11
10 17 0.17
11 52 0.52
12 15 0.15
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.39
Consensus pattern (11 bp):
ATAATATAAAT
Found at i:943470 original size:32 final size:32
Alignment explanation
Indices: 943408--943467 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
943398 AATATTATAG
* *
943408 ATATAATATAAATATATAAATATATTAAATTC
1 ATATAACATAAATATATAAACATATTAAATTC
*
943440 ATATAACATAAAT-TATCAACATATTAAA
1 ATATAACATAAATATATAAACATATTAAA
943468 ATTATAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 13 0.52
32 12 0.48
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (32 bp):
ATATAACATAAATATATAAACATATTAAATTC
Found at i:945651 original size:20 final size:20
Alignment explanation
Indices: 945626--945664 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
945616 ATTATAAAAA
*
945626 TTTAATTAATTTTAAATTAT
1 TTTAATTAATATTAAATTAT
*
945646 TTTAATTACTATTAAATTA
1 TTTAATTAATATTAAATTA
945665 AATTACATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTAATTAATATTAAATTAT
Found at i:946851 original size:2 final size:2
Alignment explanation
Indices: 946844--946874 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
946834 TTTAAGCTAA
946844 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
946875 GTATTTAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:947631 original size:14 final size:16
Alignment explanation
Indices: 947601--947632 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
947591 TAAAAAAGGG
947601 AATGATTAAAGTAATA
1 AATGATTAAAGTAATA
947617 AATGA-TAAA-TAATA
1 AATGATTAAAGTAATA
947631 AA
1 AA
947633 AAGAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 4 0.25
16 5 0.31
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.28
Consensus pattern (16 bp):
AATGATTAAAGTAATA
Found at i:950781 original size:6 final size:6
Alignment explanation
Indices: 950755--950792 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
950745 CTCTCCCTTT
*
950755 AATAAA AAGTCAA AA-AAA AATAAA AATAAA AATAAA AA
1 AATAAA AA-TAAA AATAAA AATAAA AATAAA AATAAA AA
950793 GGGGGACTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 4 0.14
6 19 0.68
7 5 0.18
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (6 bp):
AATAAA
Found at i:951875 original size:281 final size:282
Alignment explanation
Indices: 951554--952061 Score: 882
Period size: 280 Copynumber: 1.8 Consensus size: 282
951544 ATGAAATTGA
951554 AACGTTTATTTTTTTTTTCATTTTTTTAATAAAATAATTATATTTCTATTTAAAAAGTTATCAAT
1 AACGTTTA-TTTTTTTTTCATTTTTTTAATAAAATAATTATATTTCTATTTAAAAAGTTATCAAT
951619 TT-CTACATAAAACTTTATACG-TAACTTAACCTTTACTCAAAGTGTTATTTCAATATCAAACAT
65 TTCCTACAT-AAA-TTTATACGCT-ACTTAACCTTTACTCAAAGTGTTATTTCAATATCAAACAT
* *
951682 TTTATTTTGTTCACATGAA-GATGGGATGTGATGTTTTGAAATCTCTCAAAGAGGGGTATTATTT
127 TTTATTTTGTTCACAT-AAGGATCGGATGTGATGTTTTGAAATCTCTCAAAGAGGAGTATTATTT
*
951746 TAAATATTGCTTTAATTAATATCATTAATATTATTTAATATTTTTTTATTTTAATGTGGTCGGTC
191 TAAATATTACTTTAATTAATATCATTAATATTATTTAATATTTTTTTATTTTAATGTGGTCGGTC
951811 TTTTCACGAAGTTTAACTTTCGTAGCT
256 TTTTCACGAAGTTTAACTTTCGTAGCT
*
951838 AACGTTTA-TTTTTTTTCA-TTTTTTAATAAATTAATTATATTTCTATTTAAAAAGTTATCAATT
1 AACGTTTATTTTTTTTTCATTTTTTTAATAAAATAATTATATTTCTATTTAAAAAGTTATCAATT
*
951901 TCCTACATAAATTTATATGCTACTTAACCTTTACTCAAAGTGTTATTTCAATATCAAACATTTTA
66 TCCTACATAAATTTATACGCTACTTAACCTTTACTCAAAGTGTTATTTCAATATCAAACATTTTA
*
951966 TTTTGTTCATATAAGGATCGGATGTGATGTTTTGAAATCTCTCAAAGAGGAGTATTATTTTAAAT
131 TTTTGTTCACATAAGGATCGGATGTGATGTTTTGAAATCTCTCAAAGAGGAGTATTATTTTAAAT
952031 ATTACTTTAATTAATATCATTAATATTATTT
196 ATTACTTTAATTAATATCATTAATATTATTT
952062 GTCGCGACGT
Statistics
Matches: 215, Mismatches: 6, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
279 2 0.01
280 140 0.65
281 49 0.23
282 16 0.07
284 8 0.04
ACGTcount: A:0.33, C:0.10, G:0.09, T:0.47
Consensus pattern (282 bp):
AACGTTTATTTTTTTTTCATTTTTTTAATAAAATAATTATATTTCTATTTAAAAAGTTATCAATT
TCCTACATAAATTTATACGCTACTTAACCTTTACTCAAAGTGTTATTTCAATATCAAACATTTTA
TTTTGTTCACATAAGGATCGGATGTGATGTTTTGAAATCTCTCAAAGAGGAGTATTATTTTAAAT
ATTACTTTAATTAATATCATTAATATTATTTAATATTTTTTTATTTTAATGTGGTCGGTCTTTTC
ACGAAGTTTAACTTTCGTAGCT
Found at i:954394 original size:22 final size:23
Alignment explanation
Indices: 954366--954421 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 23
954356 TGGACATGTT
954366 AAAAATGCATGAAACATAAT-AA
1 AAAAATGCATGAAACATAATAAA
954388 AAAAATGCATGAAACATAATAAA
1 AAAAATGCATGAAACATAATAAA
954411 AAAAATGCATG
1 AAAAATGCATG
954422 GTCAAAGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 20 0.61
23 13 0.39
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.18
Consensus pattern (23 bp):
AAAAATGCATGAAACATAATAAA
Found at i:955379 original size:20 final size:20
Alignment explanation
Indices: 955332--955406 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
955322 AAAAAGACAT
*
955332 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
955351 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
955372 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
955392 AATGTATCGATACAT
1 AATGTATCGATACAT
955407 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:955400 original size:40 final size:39
Alignment explanation
Indices: 955329--955406 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
955319 GGTAAAAAGA
* *
955329 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
955368 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
955407 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:955980 original size:32 final size:32
Alignment explanation
Indices: 955942--956974 Score: 1897
Period size: 32 Copynumber: 32.3 Consensus size: 32
955932 TATTTGAAAA
*
955942 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
955974 GAGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
* *
956006 GGGTTGCCACCGACTTGTGTGGGTTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
* *
956038 AGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
956070 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956102 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956134 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956166 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956198 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956230 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956262 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956294 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956326 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956358 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
956390 GGGTTGCCACTGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
956422 GGGTTTCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956454 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
956486 GGGTTGCCACCTACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
956518 GGGTTTCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956550 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
956582 GGGTTGCCACTGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
956614 GGGTTGCCACCGACTTGTGTGTGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956646 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956678 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
956710 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
956742 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956774 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956806 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
956838 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956870 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
956902 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
956934 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
956966 GGG-TGCCAC
1 GGGTTGCCAC
956975 GGAGTTATGG
Statistics
Matches: 975, Mismatches: 26, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
31 6 0.01
32 969 0.99
ACGTcount: A:0.14, C:0.19, G:0.36, T:0.32
Consensus pattern (32 bp):
GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
Found at i:957007 original size:27 final size:27
Alignment explanation
Indices: 956967--957033 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
956957 CTTTGAAATG
*
956967 GGTGCCACGGAGTTATGGA-TTTAAAA
1 GGTGCCACGGAGTTATGGACTTAAAAA
*
956993 GGATGCCACGGAGTTGTGGACTTAAAAA
1 GG-TGCCACGGAGTTATGGACTTAAAAA
957021 GGTGCCACGGAGT
1 GGTGCCACGGAGT
957034 GTGCCACGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 2 0.05
27 27 0.73
28 8 0.22
ACGTcount: A:0.28, C:0.15, G:0.34, T:0.22
Consensus pattern (27 bp):
GGTGCCACGGAGTTATGGACTTAAAAA
Found at i:957050 original size:39 final size:39
Alignment explanation
Indices: 956996--957072 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
956986 TTTAAAAGGA
* *
956996 TGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTG
1 TGCCACGGAGTTGTGGACATAAAAAGGTGCCACAGAGTG
*
957035 TGCCACGGAGTTGTGGACATAAAAGGGTGCCACAGAGT
1 TGCCACGGAGTTGTGGACATAAAAAGGTGCCACAGAGT
957073 TGTGGTCTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.27, C:0.18, G:0.35, T:0.19
Consensus pattern (39 bp):
TGCCACGGAGTTGTGGACATAAAAAGGTGCCACAGAGTG
Found at i:957072 original size:27 final size:27
Alignment explanation
Indices: 957034--957990 Score: 1545
Period size: 27 Copynumber: 35.0 Consensus size: 27
957024 GCCACGGAGT
*
957034 GTGCCACGGAGTTGTGGACATAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
* *
957061 GTGCCACAGAGTTGTGGTCTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
957088 GTGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
957115 GTGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
* *
957142 GTGCCACGGAGTTGTGAACTTAAAAGA
1 GTGCCACGGAGTTGTGGACTTAAAAGG
*
957169 GTGCCACGGAGTTGTGGACTTAAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
*
957196 GTGCTACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
*
957223 GTGCCACAGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
957250 GTGCCACGGAGTTGTGGACTTAAAAGAG
1 GTGCCACGGAGTTGTGGACTTAAAAG-G
* *
957278 ATGCCACGGATTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
957305 GATGCCACGGAGTTGTGGACTTAAAAGG
1 G-TGCCACGGAGTTGTGGACTTAAAAGG
*
957333 GTGCCACGGAGTTGTGGACTTTAAAAGA
1 GTGCCACGGAGTTGTGGAC-TTAAAAGG
**
957361 GTGCCACGGAGTTGTGGACTTTGAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
957388 GTGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
*
957415 GTGCCACGGAGTTGTGGACTTTAAAAGA
1 GTGCCACGGAGTTGTGGAC-TTAAAAGG
957443 GTGCCACGGAGTTGTGGACTTTAAAAGAG
1 GTGCCACGGAGTTGTGGAC-TTAAAAG-G
*
957472 ATGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
957499 GTGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
*
957526 GTGCCACGGAGTTGTGGTCTTAAAAGAG
1 GTGCCACGGAGTTGTGGACTTAAAAG-G
*
957554 ATGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
*
957581 GATGCCACAGAGTTGTGGACTTAAAAGG
1 G-TGCCACGGAGTTGTGGACTTAAAAGG
957609 GTGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
*
957636 GTGCCACGGAGTTATGGACTTTAAAAGG
1 GTGCCACGGAGTTGTGGAC-TTAAAAGG
*
957664 GTGCCACAGAGTTGTGGACTTAAAAGAG
1 GTGCCACGGAGTTGTGGACTTAAAAG-G
* *
957692 ATGCCACGGAGTTATGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
957719 GTGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
*
957746 GTGCCACGGAGTTGTGGTCTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
957773 GATGCCACGGAGTTGTGGACTTAAAAGG
1 G-TGCCACGGAGTTGTGGACTTAAAAGG
957801 GTGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
957828 GTGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
957855 GTGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
* *
957882 GTGCCACAGAGTTGTGGACTAAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
957909 GTGCCACGGAGTTGTGGACTTTAAAAGG
1 GTGCCACGGAGTTGTGGAC-TTAAAAGG
*
957937 GTGCCACAGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
* *
957964 ATGCCACAGAGTTGTGGACTTTAAAAG
1 GTGCCACGGAGTTGTGGAC-TTAAAAG
957991 AAAATGCCAC
Statistics
Matches: 867, Mismatches: 51, Indels: 23
0.92 0.05 0.02
Matches are distributed among these distances:
27 573 0.66
28 276 0.32
29 18 0.02
ACGTcount: A:0.28, C:0.15, G:0.34, T:0.23
Consensus pattern (27 bp):
GTGCCACGGAGTTGTGGACTTAAAAGG
Found at i:957436 original size:82 final size:81
Alignment explanation
Indices: 957034--957990 Score: 1545
Period size: 82 Copynumber: 11.7 Consensus size: 81
957024 GCCACGGAGT
* * *
957034 GTGCCACGGAGTTGTGGACATAAAAGGGTGCCACAGAGTTGTGGTCTTAAAAGGGTGCCACGGAG
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
957099 TTGTGGACTTAAAAGG
66 TTGTGGACTTAAAAGG
* *
957115 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGAACTTAAAAGAGTGCCACGGAG
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
*
957180 TTGTGGACTTAAAAAG
66 TTGTGGACTTAAAAGG
* *
957196 GTGCTACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGGAG
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
957261 TTGTGGACTTAAAAGAG
66 TTGTGGACTTAAAAG-G
* *
957278 ATGCCACGGATTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGA
1 GTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGA
*
957343 GTTGTGGACTTTAAAAGA
65 GTTGTGGAC-TTAAAAGG
**
957361 GTGCCACGGAGTTGTGGACTTTGAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
*
957426 TTGTGGACTTTAAAAGA
66 TTGTGGAC-TTAAAAGG
*
957443 GTGCCACGGAGTTGTGGACTTTAAAAGAGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
1 GTGCCACGGAGTTGTGGAC-TTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
957508 AGTTGTGGACTTAAAAGG
64 AGTTGTGGACTTAAAAGG
* * *
957526 GTGCCACGGAGTTGTGGTCTTAAAAGAGATGCCACGGAGTTGTGGACTTAAAAGGGATGCCACAG
1 GTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGG
957591 AGTTGTGGACTTAAAAGG
64 AGTTGTGGACTTAAAAGG
* *
957609 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGACTTTAAAAGGGTGCCACAGA
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGA
957674 GTTGTGGACTTAAAAGAG
65 GTTGTGGACTTAAAAG-G
* *
957692 ATGCCACGGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
*
957757 TTGTGGTCTTAAAAGG
66 TTGTGGACTTAAAAGG
957773 GATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGA
1 G-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGA
957838 GTTGTGGACTTAAAAGG
65 GTTGTGGACTTAAAAGG
* *
957855 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTAAAAAGGGTGCCACGGAG
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
957920 TTGTGGACTTTAAAAGG
66 TTGTGGAC-TTAAAAGG
* * *
957937 GTGCCACAGAGTTGTGGACTTAAAAGGATGCCACAGAGTTGTGGACTTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAG
957991 AAAATGCCAC
Statistics
Matches: 823, Mismatches: 42, Indels: 20
0.93 0.05 0.02
Matches are distributed among these distances:
81 221 0.27
82 342 0.42
83 207 0.25
84 53 0.06
ACGTcount: A:0.28, C:0.15, G:0.34, T:0.23
Consensus pattern (81 bp):
GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
TTGTGGACTTAAAAGG
Found at i:965539 original size:22 final size:23
Alignment explanation
Indices: 965511--965566 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 23
965501 TGGACATGTT
965511 AAAAATGCATGAAACATAAT-AA
1 AAAAATGCATGAAACATAATAAA
965533 AAAAATGCATGAAACATAATAAA
1 AAAAATGCATGAAACATAATAAA
965556 AAAAATGCATG
1 AAAAATGCATG
965567 GTCAAAGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 20 0.61
23 13 0.39
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.18
Consensus pattern (23 bp):
AAAAATGCATGAAACATAATAAA
Found at i:966524 original size:20 final size:20
Alignment explanation
Indices: 966477--966551 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
966467 AAAAAGACAT
*
966477 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
966496 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
966517 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
966537 AATGTATCGATACAT
1 AATGTATCGATACAT
966552 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:966545 original size:40 final size:39
Alignment explanation
Indices: 966474--966551 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
966464 GGTAAAAAGA
* *
966474 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
966513 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
966552 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:967804 original size:2 final size:2
Alignment explanation
Indices: 967797--967832 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
967787 AAATAAATAA
967797 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
967833 TTGATAGGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:968808 original size:2 final size:2
Alignment explanation
Indices: 968803--968837 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
968793 ATATACCCAG
968803 AT AT AT AT -T AT AT -T AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
968838 CAAATTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 29 0.94
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:969930 original size:21 final size:21
Alignment explanation
Indices: 969903--969951 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
969893 TTAAAAATCA
*
969903 TTATTTTATTTTTAAATTTTT
1 TTATTTTATTTTTAAACTTTT
* *
969924 TTCTTTTATTTTTATACTTTT
1 TTATTTTATTTTTAAACTTTT
969945 TTATTTT
1 TTATTTT
969952 TATATATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (21 bp):
TTATTTTATTTTTAAACTTTT
Found at i:970410 original size:21 final size:19
Alignment explanation
Indices: 970385--970423 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
970375 GTTGCATATT
970385 ATATAATATATAATATAAAAG
1 ATATAATATAT--TATAAAAG
*
970406 ATATACTATATTATAAAA
1 ATATAATATATTATAAAA
970424 TTTAAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
21 10 0.59
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (19 bp):
ATATAATATATTATAAAAG
Found at i:970551 original size:9 final size:9
Alignment explanation
Indices: 970537--970660 Score: 51
Period size: 9 Copynumber: 13.8 Consensus size: 9
970527 AAATGATAAC
970537 TAATTAAAT
1 TAATTAAAT
970546 TAATTAAAT
1 TAATTAAAT
*
970555 AAATT--AT
1 TAATTAAAT
**
970562 TTTTTATAAT
1 TAATTA-AAT
970572 TAATT-AAT
1 TAATTAAAT
970580 T--TTAAAAT
1 TAATT-AAAT
* *
970588 AAAATAAAAT
1 -TAATTAAAT
* *
970598 AAAATAAAAT
1 TAATTA-AAT
*
970608 AAATTAAAT
1 TAATTAAAT
970617 TAATTAAAT
1 TAATTAAAT
**
970626 TAATTCGAT
1 TAATTAAAT
*
970635 TCATTAAAT
1 TAATTAAAT
*
970644 AAATTTAAAT
1 TAA-TTAAAT
*
970654 TGATTAA
1 TAATTAA
970661 GTAATTATTA
Statistics
Matches: 84, Mismatches: 21, Indels: 20
0.67 0.17 0.16
Matches are distributed among these distances:
6 2 0.02
7 4 0.05
8 7 0.08
9 46 0.55
10 24 0.29
11 1 0.01
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (9 bp):
TAATTAAAT
Found at i:970595 original size:10 final size:10
Alignment explanation
Indices: 970582--970615 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
970572 TAATTAATTT
970582 TAAAATAAAA
1 TAAAATAAAA
970592 TAAAATAAAA
1 TAAAATAAAA
*
970602 TAAAATAAAT
1 TAAAATAAAA
970612 TAAA
1 TAAA
970616 TTAATTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (10 bp):
TAAAATAAAA
Found at i:970602 original size:15 final size:15
Alignment explanation
Indices: 970582--970615 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
970572 TAATTAATTT
970582 TAAAATAAAATAAAA
1 TAAAATAAAATAAAA
*
970597 TAAAATAAAATAAAT
1 TAAAATAAAATAAAA
970612 TAAA
1 TAAA
970616 TTAATTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
TAAAATAAAATAAAA
Found at i:972607 original size:18 final size:19
Alignment explanation
Indices: 972566--972648 Score: 73
Period size: 19 Copynumber: 4.3 Consensus size: 19
972556 GATTTGAAAG
* *
972566 TTATT-TTTATAAAATAATT
1 TTATTATTTATTAAATTA-T
972585 TTATTATTTATT-AATTAT
1 TTATTATTTATTAAATTAT
*
972603 TTATTATTT-TTAAAAATAT
1 TTATTATTTATT-AAATTAT
*
972622 ATATTATTTTATTAATATTAT
1 TTATTA-TTTATTAA-ATTAT
972643 TTATTA
1 TTATTA
972649 AATTTAAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
17 2 0.04
18 10 0.19
19 19 0.37
20 10 0.19
21 11 0.21
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TTATTATTTATTAAATTAT
Found at i:972610 original size:40 final size:40
Alignment explanation
Indices: 972566--972658 Score: 111
Period size: 40 Copynumber: 2.3 Consensus size: 40
972556 GATTTGAAAG
*
972566 TTATTTTTATAAAATA-ATTTTATTATTTATT-A-ATTATTTA
1 TTATTTTTA-AAAATATATATTA-T-TTTATTAATATTATTTA
972606 TTATTTTTAAAAATATATATTATTTTATTAATATTATTTA
1 TTATTTTTAAAAATATATATTATTTTATTAATATTATTTA
**
972646 TTAAATTTAAAAA
1 TTATTTTTAAAAA
972659 CTCTAATATA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
38 6 0.13
39 8 0.17
40 33 0.70
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (40 bp):
TTATTTTTAAAAATATATATTATTTTATTAATATTATTTA
Found at i:972751 original size:33 final size:33
Alignment explanation
Indices: 972696--972762 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
972686 TTAAAAAAAA
*
972696 ATACATAATAAAAAATCTAATTTCACATTTAAG
1 ATACATAATAAAAAATCCAATTTCACATTTAAG
** * *
972729 ATACATAATAAAGTATCCAATTTTATATTTAAG
1 ATACATAATAAAAAATCCAATTTCACATTTAAG
972762 A
1 A
972763 ATAATCTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.36
Consensus pattern (33 bp):
ATACATAATAAAAAATCCAATTTCACATTTAAG
Found at i:973195 original size:24 final size:23
Alignment explanation
Indices: 973168--973217 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
973158 TTTTATCTTA
*
973168 TTAAGATTAAAAATTTTAATTTTT
1 TTAA-ATTAAAAATTTTAAATTTT
* *
973192 TTAATTTTAAAATTTTAAATTTT
1 TTAAATTAAAAATTTTAAATTTT
973215 TTA
1 TTA
973218 TTACTCATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (23 bp):
TTAAATTAAAAATTTTAAATTTT
Found at i:973418 original size:17 final size:18
Alignment explanation
Indices: 973396--973434 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
973386 TAATCATTTC
*
973396 AATTTAA-AAATTTTTAA
1 AATTTAATAAATTTATAA
*
973413 AATTTAATCAATTTATAA
1 AATTTAATAAATTTATAA
973431 AATT
1 AATT
973435 AATTGAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
AATTTAATAAATTTATAA
Found at i:973546 original size:22 final size:20
Alignment explanation
Indices: 973531--973567 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
973521 AAATTATTTA
973531 TATTT-TTATATAAAATAAT
1 TATTTATTATATAAAATAAT
*
973550 TATTTATTATATATAATA
1 TATTTATTATATAAAATA
973568 TAAATGATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TATTTATTATATAAAATAAT
Found at i:973572 original size:26 final size:26
Alignment explanation
Indices: 973516--973571 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 26
973506 TAATTAGTAA
* *
973516 AAAATAAATTATTTATATTTTTATAT
1 AAAATAAATTATTTATATTATAATAT
973542 AAAAT-AATTATTTATTATATATAATAT
1 AAAATAAATTATTTA-TAT-TATAATAT
973569 AAA
1 AAA
973572 TGATATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 9 0.35
26 8 0.31
27 9 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
AAAATAAATTATTTATATTATAATAT
Found at i:973857 original size:3 final size:3
Alignment explanation
Indices: 973849--973881 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
973839 CATACTTTAA
973849 AAT AAT AAT AAAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AA
973882 ATGAAAGTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:977159 original size:24 final size:23
Alignment explanation
Indices: 977122--977167 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
977112 AAAATAATAT
977122 AATTAATAAAATATTTATTATTTG
1 AATTAATAAAATATTT-TTATTTG
**
977146 AATTAATACTATATTTTTATTT
1 AATTAATAAAATATTTTTATTT
977168 TTATAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (23 bp):
AATTAATAAAATATTTTTATTTG
Found at i:977611 original size:5 final size:5
Alignment explanation
Indices: 977603--977648 Score: 51
Period size: 5 Copynumber: 9.2 Consensus size: 5
977593 AAAAATTTAA
*
977603 AATAT AATAT AATAT AA-A- AATAT AATAAA AATAT AATATT AATAT A
1 AATAT AATAT AATAT AATAT AATAT AAT-AT AATAT AATA-T AATAT A
977649 TTACTGTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 22 0.63
6 9 0.26
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (5 bp):
AATAT
Found at i:977626 original size:13 final size:13
Alignment explanation
Indices: 977608--977641 Score: 54
Period size: 11 Copynumber: 2.8 Consensus size: 13
977598 TTTAAAATAT
977608 AATATAATATAAA
1 AATATAATATAAA
977621 AATAT-A-ATAAA
1 AATATAATATAAA
977632 AATATAATAT
1 AATATAATAT
977642 TAATATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 10 0.53
12 2 0.11
13 7 0.37
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AATATAATATAAA
Found at i:977646 original size:11 final size:10
Alignment explanation
Indices: 977603--977648 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 10
977593 AAAAATTTAA
977603 AATATAATAT
1 AATATAATAT
977613 AATATAA-A-
1 AATATAATAT
*
977621 AATATAATAAA
1 AATATAAT-AT
977632 AATATAATATT
1 AATATAATA-T
977643 AATATA
1 AATATA
977649 TTACTGTATC
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
8 7 0.23
9 1 0.03
10 9 0.29
11 14 0.45
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AATATAATAT
Found at i:978425 original size:2 final size:2
Alignment explanation
Indices: 978418--978450 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
978408 TGTTTTACAT
*
978418 AG AG AG AG AG AG AG AG AG AG AG AG AG AC AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
978451 AACCCCATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.45, T:0.00
Consensus pattern (2 bp):
AG
Found at i:978651 original size:3 final size:3
Alignment explanation
Indices: 978645--978673 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
978635 CTTCGTCTTC
978645 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
978674 TCTTCTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:978870 original size:22 final size:21
Alignment explanation
Indices: 978809--978872 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 21
978799 ATTATTTAAA
978809 AATATTAAATATTATTTTTATATT
1 AATATTAAATA--A-TTTTATATT
*
978833 AATATTATATAATTTTATAATT
1 AATATTAAATAATTTTAT-ATT
*
978855 AA-ATTTAAATACTTTTAT
1 AATA-TTAAATAATTTTAT
978873 TAGATTAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
21 7 0.20
22 18 0.51
24 10 0.29
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
AATATTAAATAATTTTATATT
Found at i:980050 original size:26 final size:26
Alignment explanation
Indices: 979960--980051 Score: 82
Period size: 26 Copynumber: 3.7 Consensus size: 26
979950 TATGAAATAA
*
979960 TATTTATTATTAAAATAATAAAATAT
1 TATTTATTATTAAAATAATAATATAT
* * * *
979986 TATTTATGA-T--ATTAATAATTTGT
1 TATTTATTATTAAAATAATAATATAT
** *
980009 TAGGTATTATTGAAATAATAATATAT
1 TATTTATTATTAAAATAATAATATAT
*
980035 TATTTATCATTAAAATA
1 TATTTATTATTAAAATA
980052 TGAAGAAATG
Statistics
Matches: 48, Mismatches: 15, Indels: 6
0.70 0.22 0.09
Matches are distributed among these distances:
23 15 0.31
24 1 0.02
25 1 0.02
26 31 0.65
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.48
Consensus pattern (26 bp):
TATTTATTATTAAAATAATAATATAT
Found at i:983191 original size:40 final size:40
Alignment explanation
Indices: 983146--983222 Score: 136
Period size: 40 Copynumber: 1.9 Consensus size: 40
983136 CTGCTAAAGG
* *
983146 CAATTCTTTATTTATTTATTAAATTATAATTATGTGTGAA
1 CAATTCTTTATGTATTTATTAAATTATAATCATGTGTGAA
983186 CAATTCTTTATGTATTTATTAAATTATAATCATGTGT
1 CAATTCTTTATGTATTTATTAAATTATAATCATGTGT
983223 AATTAGTCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.34, C:0.06, G:0.08, T:0.52
Consensus pattern (40 bp):
CAATTCTTTATGTATTTATTAAATTATAATCATGTGTGAA
Found at i:983686 original size:3 final size:3
Alignment explanation
Indices: 983674--983720 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
983664 AAGCAGATAT
983674 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
983721 GTAACAATAG
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:984726 original size:17 final size:16
Alignment explanation
Indices: 984695--984729 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
984685 ATATGAAAAA
*
984695 ATAATTAAAATATAAT
1 ATAATTAAAAAATAAT
984711 ATAATATAAAAAATAAT
1 ATAAT-TAAAAAATAAT
984728 AT
1 AT
984730 GGATATGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
ATAATTAAAAAATAAT
Found at i:985035 original size:23 final size:22
Alignment explanation
Indices: 985009--985051 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
984999 AATCTCTCTA
985009 ATTTTAAGTTATATTATAATTAT
1 ATTTTAAGTTATA-TATAATTAT
*
985032 ATTTTAATTTATATATAATT
1 ATTTTAAGTTATATATAATT
985052 TTATCAACTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
ATTTTAAGTTATATATAATTAT
Found at i:987086 original size:32 final size:33
Alignment explanation
Indices: 987005--987086 Score: 94
Period size: 34 Copynumber: 2.5 Consensus size: 33
986995 TCTTTATAAT
* * *
987005 TAATTATTTACCTCTTTTATAGATAAAGTAAAA
1 TAATTATTTATCTCTTGTATAGATAAAATAAAA
* * *
987038 TAATCTCTTTATCTCTTGTATAGATAAAATGAAG
1 TAAT-TATTTATCTCTTGTATAGATAAAATAAAA
987072 TAATT-TTTATCTCTT
1 TAATTATTTATCTCTT
987087 ATCTCTTGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
32 10 0.24
33 5 0.12
34 27 0.64
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.46
Consensus pattern (33 bp):
TAATTATTTATCTCTTGTATAGATAAAATAAAA
Found at i:989237 original size:17 final size:18
Alignment explanation
Indices: 989215--989248 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
989205 AATTTTAATG
989215 ATTTAAATTATT-TTTAT
1 ATTTAAATTATTATTTAT
*
989232 ATTTAATTTATTATTTA
1 ATTTAAATTATTATTTA
989249 ATTAAATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTTAAATTATTATTTAT
Found at i:989320 original size:85 final size:85
Alignment explanation
Indices: 989145--989332 Score: 197
Period size: 85 Copynumber: 2.2 Consensus size: 85
989135 CATACATTTA
* * * *
989145 ATATTTAATTTATTATTTAATTAAAAAATCTGATTCAACTAATTAAATTAATAACTCCATAATTT
1 ATATTTAATTTATTATTTAATTAAAAAATATAATTCAACTAATTAAACTAATAACTCCAAAATTT
* * **
989210 TAATGATTTAAATTATTTTT
66 TAACGATATAAATTATTGAT
* * *
989230 ATATTTAATTTATTATTTAATTAAATAATATAATTCAAGTAATTAAACT-ATGA-TCCAAAAACT
1 ATATTTAATTTATTATTTAATTAAAAAATATAATTCAACTAATTAAACTAATAACTCC-AAAA-T
*
989293 TTTAACGATATAAGTT-TTGAT
64 TTTAACGATATAAATTATTGAT
989314 ATTATTT--TTTATTTATTTA
1 A-TATTTAATTTA-TTATTTA
989333 CTATAATCTC
Statistics
Matches: 87, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
83 7 0.08
84 17 0.20
85 63 0.72
ACGTcount: A:0.41, C:0.06, G:0.04, T:0.48
Consensus pattern (85 bp):
ATATTTAATTTATTATTTAATTAAAAAATATAATTCAACTAATTAAACTAATAACTCCAAAATTT
TAACGATATAAATTATTGAT
Found at i:989845 original size:17 final size:17
Alignment explanation
Indices: 989823--989889 Score: 89
Period size: 17 Copynumber: 3.8 Consensus size: 17
989813 AAGTTAAAAT
*
989823 TGTTATTTTTTTACCCA
1 TGTTATTTTTTTATCCA
989840 TGTTATTTTTTTAATCCA
1 TGTTATTTTTTT-ATCCA
*
989858 TTATTATTTTTTTATCCA
1 -TGTTATTTTTTTATCCA
*
989876 TGTTACTTTTTTAT
1 TGTTATTTTTTTAT
989890 ACCTTCGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
17 24 0.55
18 9 0.20
19 11 0.25
ACGTcount: A:0.19, C:0.12, G:0.04, T:0.64
Consensus pattern (17 bp):
TGTTATTTTTTTATCCA
Found at i:990603 original size:34 final size:34
Alignment explanation
Indices: 990565--990630 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 34
990555 AATAATCATG
990565 TTGAAAAAGAAAAAT-AATAAATGCTAATATCTCT
1 TTGAAAAA-AAAAATAAATAAATGCTAATATCTCT
*
990599 TTGAAAAAAAAAATAAATAAATGTTAATATCT
1 TTGAAAAAAAAAATAAATAAATGCTAATATCT
990631 TAATAAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 6 0.20
34 24 0.80
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.30
Consensus pattern (34 bp):
TTGAAAAAAAAAATAAATAAATGCTAATATCTCT
Found at i:992539 original size:20 final size:20
Alignment explanation
Indices: 992511--992554 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
992501 TTGTTATTAC
*
992511 TTTATAAAATTATAATTTTA
1 TTTAGAAAATTATAATTTTA
*
992531 TTTAGAAAATTATAGTTTTA
1 TTTAGAAAATTATAATTTTA
992551 TTTA
1 TTTA
992555 TTACTTATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (20 bp):
TTTAGAAAATTATAATTTTA
Found at i:995421 original size:29 final size:30
Alignment explanation
Indices: 995365--995443 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 30
995355 ATGTAATCTA
*
995365 ATATAAATAATAATTTTATTACTTATTTTT
1 ATATAAATAATAATTTTATTACTCATTTTT
**
995395 ATATAAAT-ATAATTTTAATTA-TCATTTAA
1 ATATAAATAATAATTTT-ATTACTCATTTTT
**
995424 ATA-AAATTTTAATTTTATTA
1 ATATAAATAATAATTTTATTA
995444 TTTAATATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
28 8 0.19
29 23 0.53
30 12 0.28
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (30 bp):
ATATAAATAATAATTTTATTACTCATTTTT
Found at i:995467 original size:26 final size:24
Alignment explanation
Indices: 995393--995471 Score: 81
Period size: 26 Copynumber: 3.2 Consensus size: 24
995383 TTACTTATTT
*
995393 TTATATAA-ATATAATTTTAATTA
1 TTATTTAATATATAATTTTAATTA
* *
995416 TCATTTAA-ATAAAATTTTAATTTTA
1 TTATTTAATATATAATTTTAA--TTA
995441 TTATTTAATATATAATTTTATAGTTA
1 TTATTTAATATATAATTTTA-A-TTA
995467 TTATT
1 TTATT
995472 ATTATTGAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
23 17 0.37
25 10 0.22
26 18 0.39
27 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (24 bp):
TTATTTAATATATAATTTTAATTA
Found at i:996256 original size:2 final size:2
Alignment explanation
Indices: 996249--996282 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
996239 TGCAAAATAA
*
996249 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
996283 GAATGTGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:996638 original size:18 final size:20
Alignment explanation
Indices: 996599--996638 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
996589 TTAATATAAA
996599 AAAACTTTAAATATTAATAC
1 AAAACTTTAAATATTAATAC
*
996619 AAAA-TTTAATTATT-ATAC
1 AAAACTTTAAATATTAATAC
996637 AA
1 AA
996639 TTTATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 9 0.47
20 4 0.21
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAACTTTAAATATTAATAC
Found at i:999830 original size:2 final size:2
Alignment explanation
Indices: 999818--999859 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
999808 AAGATTTTCA
* *
999818 AT AT CT AT AT AT AT AT AT AT AT AT -T AT -T GT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
999858 AT
1 AT
999860 TTTCAAAAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
1 2 0.06
2 33 0.94
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (2 bp):
AT
Found at i:1003132 original size:52 final size:52
Alignment explanation
Indices: 1003054--1003254 Score: 323
Period size: 52 Copynumber: 3.9 Consensus size: 52
1003044 CGAAATATGA
*
1003054 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
* *
1003106 AAATTTGCCTGCATATATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
* *
1003158 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
**
1003210 AAATTTGCCTGCATGTATCGATACAAAG-ATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGTAT-AGTGTATCGATACA
1003255 ATGTATCGAT
Statistics
Matches: 139, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
51 2 0.01
52 137 0.99
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
Found at i:1003261 original size:13 final size:13
Alignment explanation
Indices: 1003243--1003267 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1003233 CAAAGATCAG
1003243 TGTATCGATACAA
1 TGTATCGATACAA
1003256 TGTATCGATACA
1 TGTATCGATACA
1003268 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1003345 original size:33 final size:33
Alignment explanation
Indices: 1003308--1003374 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1003298 AGTAGCTTAA
1003308 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
1003341 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
1003374 A
1 A
1003375 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:1003348 original size:13 final size:13
Alignment explanation
Indices: 1003330--1003354 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1003320 CAAAAAAATA
1003330 TGTATCGATACAT
1 TGTATCGATACAT
1003343 TGTATCGATACA
1 TGTATCGATACA
1003355 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1003901 original size:13 final size:13
Alignment explanation
Indices: 1003880--1003910 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
1003870 CGATACATGG
*
1003880 TACAATGTATCGA
1 TACATTGTATCGA
1003893 TACATTGTATCGA
1 TACATTGTATCGA
1003906 TACAT
1 TACAT
1003911 GAAGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:1003906 original size:33 final size:32
Alignment explanation
Indices: 1003864--1003930 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 32
1003854 CTATCACTAT
1003864 TTGTATCGATACATG-GTACAATGTATCGATACA
1 TTGTATCGATACATGAG-A-AATGTATCGATACA
1003897 TTGTATCGATACATGAAGAAATGTATCGATACA
1 TTGTATCGATACATG-AGAAATGTATCGATACA
1003930 T
1 T
1003931 AGCTTGTAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 30 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (32 bp):
TTGTATCGATACATGAGAAATGTATCGATACA
Found at i:1007351 original size:20 final size:21
Alignment explanation
Indices: 1007322--1007362 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
1007312 TGTTTTTGAA
1007322 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
1007341 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
1007363 AAGAAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:1007512 original size:13 final size:13
Alignment explanation
Indices: 1007494--1007518 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1007484 ATAAGCCCCC
1007494 TGTATCGATACAT
1 TGTATCGATACAT
1007507 TGTATCGATACA
1 TGTATCGATACA
1007519 AAGAATACTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1019994 original size:13 final size:13
Alignment explanation
Indices: 1019976--1020004 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
1019966 ACAATATTCC
1019976 TTGTATCGATACA
1 TTGTATCGATACA
1019989 TTGTATCGATACA
1 TTGTATCGATACA
1020002 TTG
1 TTG
1020005 GGTACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1022522 original size:20 final size:19
Alignment explanation
Indices: 1022476--1022532 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
1022466 TTGCATCGAT
*
1022476 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
* *
1022495 TCATTGTATCGATAGATGG
1 ACATTGTATCGATACATGG
1022514 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
1022533 AAACTGGCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:1022617 original size:33 final size:33
Alignment explanation
Indices: 1022561--1022627 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 33
1022551 CTATCACTAT
*
1022561 TTGTATCGATACATGGTACAATGTATTGATACA
1 TTGTATCGATACATGGTACAATGTATCGATACA
1022594 TTGTATCGATACATGAAG-A-AATGTATCGATACA
1 TTGTATCGATACATG--GTACAATGTATCGATACA
1022627 T
1 T
1022628 AGCTTGTAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 29 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (33 bp):
TTGTATCGATACATGGTACAATGTATCGATACA
Done.