Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1193
Parameters: 2 7 7 80 10 50 1000
Length:  82000

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2585--2641
23
2.4
24
83
13
66
54
0
0
45
0.99
2601--2641
11
3.4
12
86
10
57
53
0
0
46
1.00
2582--2645
26
2.4
27
75
15
71
57
0
0
42
0.98
3264--3309
18
2.5
18
86
10
58
65
2
2
30
1.16
3383--3455
2
36.5
2
94
0
128
50
2
0
46
1.15
3597--3627
14
2.2
14
94
0
53
70
0
3
25
1.02
4270--4305
17
2.1
17
89
0
54
41
25
5
27
1.77
11529--11563
2
17.5
2
100
0
70
51
48
0
0
1.00
13139--13183
19
2.4
19
85
7
56
57
0
0
42
0.98
14014--14068
26
2.1
26
86
6
76
43
1
1
52
1.22
15355--15382
6
4.7
6
100
0
56
64
0
0
35
0.94
16256--16286
2
15.5
2
100
0
62
51
0
0
48
1.00
16480--16531
21
2.4
21
83
6
59
46
0
0
53
1.00
16483--16538
29
1.9
28
82
13
69
46
0
0
53
1.00
18228--18300
16
4.7
16
70
14
55
39
1
0
58
1.06
19024--19049
2
13.0
2
100
0
52
50
0
0
50
1.00
20414--20455
20
2.0
22
86
9
61
59
2
2
35
1.23
21545--21631
44
2.0
43
82
13
106
49
0
0
50
1.00
22113--22157
2
22.5
2
100
0
90
51
0
48
0
1.00
23332--23397
23
2.9
22
80
13
71
71
0
1
27
0.95
23351--23461
34
3.4
33
75
14
99
61
0
0
38
0.96
23360--23448
16
5.4
16
70
16
65
59
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23358--23480
33
3.5
34
77
20
121
60
0
0
38
1.02
23433--23480
19
2.4
20
80
16
55
62
0
2
35
1.07
23369--23479
10
11.1
10
71
21
74
59
0
0
39
1.04
24576--24642
20
3.3
19
82
14
73
56
0
0
43
0.99
24656--24726
30
2.3
31
80
7
81
46
0
0
53
1.00
24587--24717
51
2.6
47
78
15
127
48
0
0
51
1.00
24664--24726
30
2.1
31
84
3
83
44
0
0
55
0.99
26423--26461
2
19.5
2
100
0
78
51
0
0
48
1.00
28739--28800
30
2.1
30
88
5
92
46
0
0
53
1.00
29007--29067
18
3.3
18
84
6
77
55
0
0
44
0.99
29007--29065
19
3.1
19
79
13
68
54
0
0
45
0.99
32172--32248
20
4.3
18
77
15
79
57
1
0
41
1.07
32165--32232
20
3.7
20
81
13
67
58
1
0
39
1.07
32180--32248
16
4.0
16
76
12
57
57
1
0
40
1.07
32775--32811
3
12.7
3
88
5
58
70
0
0
29
0.88
34023--34056
10
3.4
10
84
15
52
17
2
0
79
0.86
35296--35375
24
3.2
24
74
10
81
63
1
0
35
1.02
35296--35370
13
6.7
11
73
21
59
65
0
0
34
0.93
35297--35367
20
3.7
19
76
12
74
64
0
0
35
0.94
35287--35381
43
2.3
42
80
10
106
60
3
0
36
1.13
41213--41249
16
2.2
18
85
9
51
40
10
5
43
1.63
43910--43950
19
2.2
19
95
0
73
39
7
9
43
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43915--43956
19
2.2
19
86
0
57
38
11
11
38
1.79
51739--51788
25
2.0
25
96
0
91
42
20
10
28
1.84
56208--56285
39
2.0
39
82
12
97
41
1
0
57
1.07
56565--56609
18
2.6
18
83
13
58
51
0
2
46
1.13
57015--57045
13
2.4
13
94
0
53
41
3
0
54
1.16
59725--59804
41
1.9
42
90
7
128
65
2
2
30
1.19
59725--59789
20
3.3
19
71
23
53
66
3
1
29
1.16
59743--59808
19
3.3
19
68
24
55
63
3
3
30
1.24
61015--61067
15
3.5
16
80
14
51
39
5
3
50
1.44
62825--62881
29
2.0
29
83
13
73
54
10
3
31
1.51
64215--64244
3
10.0
3
100
0
60
66
0
0
33
0.92
64527--64819
148
2.0
148
93
1
507
40
13
12
33
1.82
70286--70324
17
2.3
17
90
0
60
48
0
0
51
1.00
70366--70407
16
2.6
17
81
11
52
71
0
0
28
0.86
71247--71271
13
1.9
13
100
0
50
44
0
0
56
0.99
72457--72508
27
1.9
27
84
7
70
26
23
9
40
1.85
77780--77821
2
21.0
2
100
0
84
50
0
0
50
1.00
81145--81180
17
2.2
17
95
5
65
38
11
11
38
1.76

Tables:   1

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