genome.fa.s1194.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1194
Parameters: 2 7 7 80 10 50 1000
Length:  52611

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128--158	2	15.5	2	100	0	62	48	0	0	51	1.00
77--144	26	2.6	26	77	13	77	36	5	10	47	1.62
1861--1889	2	14.5	2	100	0	58	48	0	0	51	1.00
2070--2286	34	6.4	34	87	1	285	24	7	26	40	1.82
2070--2288	67	3.3	67	87	1	312	24	7	26	40	1.82
6697--6914	34	6.5	34	87	1	287	25	7	26	40	1.82
6697--6916	67	3.3	67	87	1	314	25	7	26	40	1.82
9497--9535	20	2.0	20	89	0	60	35	5	46	12	1.65
9648--9705	26	2.3	25	91	5	91	25	15	25	32	1.95
14159--14206	24	1.9	26	84	16	66	47	22	8	20	1.77
14218--14275	26	2.3	25	88	5	82	27	15	24	32	1.95
15737--15761	1	25.0	1	100	0	50	0	0	0	100	0.00
15992--16044	26	2.0	27	96	3	99	37	3	11	47	1.58
20439--20469	3	10.3	3	100	0	62	0	32	0	67	0.91
21837--22010	67	2.7	67	81	15	215	45	2	0	50	1.20
25854--25918	21	3.1	21	80	10	64	67	0	1	30	1.00
25848--25907	31	2.0	30	83	9	77	65	0	1	33	1.03
25886--25919	10	3.3	11	92	8	54	76	0	0	23	0.79
26340--26373	2	17.0	2	87	0	50	50	0	2	47	1.16
26933--27001	21	3.3	20	74	15	61	46	0	0	53	1.00
29678--29746	32	2.2	32	82	10	79	47	7	2	42	1.46
31603--31629	13	2.1	13	100	0	54	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32899--32947	15	3.2	15	79	2	53	51	0	0	48	1.00
33918--33967	16	3.3	15	78	18	50	52	0	0	48	1.00
33922--33969	15	3.2	14	78	21	53	50	0	0	50	1.00
34692--34718	3	9.0	3	100	0	54	66	0	0	33	0.92
37940--37995	25	2.2	24	84	12	69	44	1	0	53	1.11
39617--39832	34	6.4	34	86	1	274	24	6	27	41	1.80
39617--39834	67	3.2	67	86	1	301	24	6	27	41	1.80
44247--44464	34	6.5	34	87	1	287	24	7	27	40	1.81
44247--44466	67	3.3	66	87	2	305	24	7	27	40	1.81
44247--44466	101	2.2	101	90	4	345	24	7	27	40	1.81
47191--47253	32	2.0	30	84	6	81	55	3	0	41	1.16
51620--51654	17	2.1	17	89	10	54	34	0	65	0	0.93
51620--51656	18	2.1	18	94	0	65	37	0	62	0	0.96
51622--51663	18	2.3	18	87	4	57	38	0	61	0	0.96

Tables:   1

The End!