genome.fa.s1199.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1199
Parameters: 2 7 7 80 10 50 1000
Length:  59776

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1460--1522	19	3.3	19	90	0	90	34	19	17	28	1.94
1827--2010	34	5.4	34	87	3	255	40	26	7	25	1.82
8274--8313	20	2.0	20	85	0	53	42	2	37	17	1.63
8366--8435	24	2.8	25	89	6	99	44	25	8	21	1.80
8420--8490	27	2.6	27	88	6	99	46	23	7	22	1.76
8368--8493	24	4.9	24	77	12	92	46	25	7	21	1.77
12960--13029	24	2.8	25	89	6	99	44	25	8	21	1.80
13014--13084	27	2.6	27	88	6	99	46	23	7	22	1.76
12962--13087	24	4.9	24	77	12	92	46	25	7	21	1.77
18253--18304	26	2.0	26	85	14	72	44	0	0	55	0.99
18261--18383	19	6.9	19	67	25	72	38	0	0	60	1.02
18242--18377	24	5.4	26	70	20	85	38	0	1	59	1.06
18268--18361	11	8.8	11	71	16	56	40	0	1	58	1.05
18273--18379	19	5.7	19	70	22	75	37	0	0	61	1.02
24965--25000	18	2.0	18	100	0	72	44	16	11	27	1.82
26101--26175	20	3.8	20	80	3	80	40	12	13	34	1.81
26098--26175	40	2.0	39	87	2	111	39	12	12	34	1.82
26704--27337	32	19.8	32	95	0	1081	14	18	35	31	1.91
27320--27859	27	19.7	27	88	4	726	27	14	35	23	1.93
27320--27867	82	6.7	81	90	3	819	27	14	34	23	1.94
27305--27867	219	2.6	218	90	5	866	27	14	34	23	1.94
35200--35235	18	2.0	18	100	0	72	44	16	11	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36337--36411	20	3.8	20	80	3	80	40	12	13	34	1.81
36334--36411	40	2.0	39	87	2	111	39	12	12	34	1.82
38872--38922	12	4.2	12	82	7	68	31	0	0	68	0.90
38797--38912	23	4.9	23	69	19	69	35	2	0	62	1.09
38876--38920	23	2.0	23	95	0	81	31	0	0	68	0.89
39910--39946	17	2.1	18	95	5	67	67	8	24	0	1.17
40123--40182	23	2.6	22	82	15	68	36	0	1	61	1.06
41213--41256	22	1.9	24	86	9	65	34	4	2	59	1.30
41430--41466	18	2.1	18	90	10	58	35	0	27	37	1.57
42157--42187	2	15.5	2	93	0	53	48	0	3	48	1.17
42223--42266	20	2.2	20	80	11	56	45	2	0	52	1.13
42263--42304	22	1.9	22	90	9	68	54	9	0	35	1.33
42691--42724	13	2.6	13	82	17	52	50	0	0	50	1.00
42707--42771	22	3.0	22	78	10	71	52	0	0	47	1.00
42756--42785	5	6.0	5	92	0	51	56	0	0	43	0.99
43657--43696	12	3.3	13	80	13	50	77	0	20	2	0.88
43729--43771	16	2.6	17	85	7	61	44	0	0	55	0.99
43754--43813	8	7.9	8	75	17	65	36	0	0	63	0.95
44713--44745	10	3.4	10	83	8	50	33	0	0	66	0.92
44714--44768	17	3.1	18	82	15	62	32	0	1	65	1.03
44712--44781	21	3.4	22	79	11	62	31	0	1	67	1.00
44769--44828	24	2.4	26	75	13	63	50	3	1	45	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44786--44843	25	2.3	25	80	11	66	62	3	1	32	1.22
45170--45411	109	2.2	110	81	6	269	38	16	13	31	1.88
52141--52187	18	2.7	18	78	21	55	74	2	19	4	1.09
53164--53384	58	3.8	58	81	1	275	27	11	16	45	1.81
53204--53415	116	1.8	116	82	4	275	30	10	13	45	1.78
55846--55905	31	1.9	31	86	6	86	51	0	0	48	1.00
58256--58450	98	2.0	99	88	5	297	38	3	6	51	1.42
59104--59182	24	3.3	24	70	16	65	70	2	0	26	0.99
59118--59163	15	3.4	14	82	11	60	76	2	0	21	0.90
59110--59177	19	3.7	19	76	17	65	79	2	0	17	0.86
59258--59294	3	12.3	3	100	0	74	32	0	0	67	0.91

Tables:   1

The End!